Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564850 | XP_003629763.2 | 98.456 | 259 | 4 | 0 | 1 | 259 | 1 | 259 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564850 | sp|Q96452|1433C_SOYBN | 89.189 | 259 | 27 | 1 | 1 | 259 | 1 | 258 | 3.12e-170 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564850 | G7LIR4 | 98.456 | 259 | 4 | 0 | 1 | 259 | 1 | 259 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0564850 | 0.835461 | 1.656107e-56 | -8.615850e-47 |
| Msa0020410 | Msa0564850 | 0.852624 | 4.084454e-61 | -8.615850e-47 |
| Msa0026910 | Msa0564850 | 0.814203 | 1.735936e-51 | -8.615850e-47 |
| Msa0037880 | Msa0564850 | 0.808364 | 3.211702e-50 | -8.615850e-47 |
| Msa0043980 | Msa0564850 | 0.882509 | 9.815858e-71 | -8.615850e-47 |
| Msa0049750 | Msa0564850 | 0.830473 | 2.879235e-55 | -8.615850e-47 |
| Msa0051630 | Msa0564850 | 0.828273 | 9.853932e-55 | -8.615850e-47 |
| Msa0051740 | Msa0564850 | 0.831864 | 1.311082e-55 | -8.615850e-47 |
| Msa0051750 | Msa0564850 | 0.854164 | 1.477436e-61 | -8.615850e-47 |
| Msa0079130 | Msa0564850 | 0.829056 | 6.371503e-55 | -8.615850e-47 |
| Msa0083280 | Msa0564850 | 0.820217 | 7.706471e-53 | -8.615850e-47 |
| Msa0086420 | Msa0564850 | 0.805135 | 1.544701e-49 | -8.615850e-47 |
| Msa0090550 | Msa0564850 | 0.826319 | 2.895085e-54 | -8.615850e-47 |
| Msa0099910 | Msa0564850 | 0.807575 | 4.727590e-50 | -8.615850e-47 |
| Msa0104230 | Msa0564850 | 0.813095 | 3.044129e-51 | -8.615850e-47 |
| Msa0117520 | Msa0564850 | 0.824618 | 7.320288e-54 | -8.615850e-47 |
| Msa0138020 | Msa0564850 | 0.846575 | 1.992458e-59 | -8.615850e-47 |
| Msa0142500 | Msa0564850 | 0.805022 | 1.631136e-49 | -8.615850e-47 |
| Msa0148080 | Msa0564850 | 0.823289 | 1.500591e-53 | -8.615850e-47 |
| Msa0160960 | Msa0564850 | 0.837889 | 3.981080e-57 | -8.615850e-47 |
| Msa0172080 | Msa0564850 | 0.824075 | 9.823079e-54 | -8.615850e-47 |
| Msa0178570 | Msa0564850 | 0.831214 | 1.895120e-55 | -8.615850e-47 |
| Msa0206010 | Msa0564850 | 0.837219 | 5.914969e-57 | -8.615850e-47 |
| Msa0207030 | Msa0564850 | 0.834637 | 2.671478e-56 | -8.615850e-47 |
| Msa0218370 | Msa0564850 | 0.815957 | 7.084796e-52 | -8.615850e-47 |
| Msa0230610 | Msa0564850 | 0.816797 | 4.595753e-52 | -8.615850e-47 |
| Msa0233370 | Msa0564850 | 0.812342 | 4.449370e-51 | -8.615850e-47 |
| Msa0376910 | Msa0564850 | 0.814673 | 1.366662e-51 | -8.615850e-47 |
| Msa0388730 | Msa0564850 | 0.822693 | 2.066051e-53 | -8.615850e-47 |
| Msa0392270 | Msa0564850 | 0.809667 | 1.689700e-50 | -8.615850e-47 |
| Msa0395750 | Msa0564850 | 0.833579 | 4.918172e-56 | -8.615850e-47 |
| Msa0397270 | Msa0564850 | 0.804044 | 2.609146e-49 | -8.615850e-47 |
| Msa0455760 | Msa0564850 | 0.812654 | 3.802148e-51 | -8.615850e-47 |
| Msa0457960 | Msa0564850 | 0.830036 | 3.681457e-55 | -8.615850e-47 |
| Msa0471900 | Msa0564850 | 0.818445 | 1.952676e-52 | -8.615850e-47 |
| Msa0481280 | Msa0564850 | 0.827943 | 1.183283e-54 | -8.615850e-47 |
| Msa0243090 | Msa0564850 | 0.810201 | 1.296764e-50 | -8.615850e-47 |
| Msa0249200 | Msa0564850 | 0.801988 | 6.942762e-49 | -8.615850e-47 |
| Msa0270960 | Msa0564850 | 0.804819 | 1.798636e-49 | -8.615850e-47 |
| Msa0278580 | Msa0564850 | 0.828580 | 8.307717e-55 | -8.615850e-47 |
| Msa0285330 | Msa0564850 | 0.849456 | 3.197147e-60 | -8.615850e-47 |
| Msa0287410 | Msa0564850 | 0.842577 | 2.375666e-58 | -8.615850e-47 |
| Msa0305410 | Msa0564850 | 0.863368 | 2.617537e-64 | -8.615850e-47 |
| Msa0308440 | Msa0564850 | 0.810679 | 1.022189e-50 | -8.615850e-47 |
| Msa0316390 | Msa0564850 | 0.859329 | 4.461183e-63 | -8.615850e-47 |
| Msa0317960 | Msa0564850 | 0.815042 | 1.132307e-51 | -8.615850e-47 |
| Msa0326110 | Msa0564850 | 0.839293 | 1.727907e-57 | -8.615850e-47 |
| Msa0335060 | Msa0564850 | 0.809284 | 2.041748e-50 | -8.615850e-47 |
| Msa0363790 | Msa0564850 | 0.824260 | 8.887195e-54 | -8.615850e-47 |
| Msa0486690 | Msa0564850 | 0.805619 | 1.223168e-49 | -8.615850e-47 |
| Msa0501450 | Msa0564850 | 0.809224 | 2.103599e-50 | -8.615850e-47 |
| Msa0518170 | Msa0564850 | 0.817502 | 3.190017e-52 | -8.615850e-47 |
| Msa0518380 | Msa0564850 | 0.803717 | 3.050873e-49 | -8.615850e-47 |
| Msa0542260 | Msa0564850 | 0.820405 | 6.978474e-53 | -8.615850e-47 |
| Msa0545050 | Msa0564850 | 0.807958 | 3.919115e-50 | -8.615850e-47 |
| Msa0548240 | Msa0564850 | 0.814162 | 1.773007e-51 | -8.615850e-47 |
| Msa0564850 | Msa0566350 | 0.813075 | 3.075268e-51 | -8.615850e-47 |
| Msa0564850 | Msa0566750 | 0.812540 | 4.028046e-51 | -8.615850e-47 |
| Msa0564850 | Msa0594560 | 0.810895 | 9.180821e-51 | -8.615850e-47 |
| Msa0564850 | Msa0604290 | 0.821083 | 4.876183e-53 | -8.615850e-47 |
| Msa0564850 | Msa0624060 | 0.820002 | 8.633091e-53 | -8.615850e-47 |
| Msa0564850 | Msa0641130 | 0.806062 | 9.870718e-50 | -8.615850e-47 |
| Msa0564850 | Msa0645530 | 0.803050 | 4.194846e-49 | -8.615850e-47 |
| Msa0564850 | Msa0657120 | 0.857259 | 1.843331e-62 | -8.615850e-47 |
| Msa0564850 | Msa0676130 | 0.817876 | 2.626751e-52 | -8.615850e-47 |
| Msa0564850 | Msa0676180 | 0.819059 | 1.417030e-52 | -8.615850e-47 |
| Msa0564850 | Msa0676280 | 0.800149 | 1.650161e-48 | -8.615850e-47 |
| Msa0564850 | Msa0685090 | 0.828770 | 7.472457e-55 | -8.615850e-47 |
| Msa0564850 | Msa0693520 | 0.806127 | 9.563563e-50 | -8.615850e-47 |
| Msa0564850 | Msa0701100 | 0.856980 | 2.229071e-62 | -8.615850e-47 |
| Msa0564850 | Msa0705990 | 0.812449 | 4.215133e-51 | -8.615850e-47 |
| Msa0564850 | Msa0724780 | 0.813688 | 2.254800e-51 | -8.615850e-47 |
| Msa0564850 | Msa0750850 | 0.803851 | 2.862212e-49 | -8.615850e-47 |
| Msa0564850 | Msa0757610 | 0.801841 | 7.444506e-49 | -8.615850e-47 |
| Msa0564850 | Msa0758260 | 0.800746 | 1.247116e-48 | -8.615850e-47 |
| Msa0564850 | Msa0765180 | 0.808352 | 3.230734e-50 | -8.615850e-47 |
| Msa0564850 | Msa0795340 | 0.807110 | 5.931463e-50 | -8.615850e-47 |
| Msa0564850 | Msa0818060 | 0.804226 | 2.391677e-49 | -8.615850e-47 |
| Msa0564850 | Msa0894930 | 0.809654 | 1.700264e-50 | -8.615850e-47 |
| Msa0564850 | Msa0905730 | 0.820328 | 7.267944e-53 | -8.615850e-47 |
| Msa0564850 | Msa1005990 | 0.802888 | 4.529343e-49 | -8.615850e-47 |
| Msa0564850 | Msa1035480 | 0.811692 | 6.165022e-51 | -8.615850e-47 |
| Msa0564850 | Msa1089460 | 0.823795 | 1.142745e-53 | -8.615850e-47 |
| Msa0564850 | Msa1107200 | 0.810674 | 1.025168e-50 | -8.615850e-47 |
| Msa0564850 | Msa1107260 | 0.844862 | 5.813020e-59 | -8.615850e-47 |
| Msa0564850 | Msa1109680 | 0.825155 | 5.469959e-54 | -8.615850e-47 |
| Msa0564850 | Msa1122150 | 0.857700 | 1.365125e-62 | -8.615850e-47 |
| Msa0564850 | Msa1135470 | 0.806876 | 6.648471e-50 | -8.615850e-47 |
| Msa0564850 | Msa1144040 | 0.824588 | 7.442709e-54 | -8.615850e-47 |
| Msa0564850 | Msa1150900 | 0.835368 | 1.747971e-56 | -8.615850e-47 |
| Msa0564850 | Msa1160560 | 0.843080 | 1.745423e-58 | -8.615850e-47 |
| Msa0564850 | Msa1162780 | 0.800003 | 1.766961e-48 | -8.615850e-47 |
| Msa0564850 | Msa1174040 | 0.808212 | 3.460205e-50 | -8.615850e-47 |
| Msa0564850 | Msa1181250 | 0.801620 | 8.262941e-49 | -8.615850e-47 |
| Msa0564850 | Msa1207310 | 0.821501 | 3.905122e-53 | -8.615850e-47 |
| Msa0564850 | Msa1208380 | 0.840218 | 9.928701e-58 | -8.615850e-47 |
| Msa0564850 | Msa1250110 | 0.808408 | 3.143093e-50 | -8.615850e-47 |
| Msa0564850 | Msa1250530 | 0.801997 | 6.914749e-49 | -8.615850e-47 |
| Msa0564850 | Msa1257750 | 0.807904 | 4.024464e-50 | -8.615850e-47 |
| Msa0564850 | Msa1270660 | 0.808949 | 2.408564e-50 | -8.615850e-47 |
| Msa0564850 | Msa1270730 | 0.811132 | 8.158581e-51 | -8.615850e-47 |
| Msa0564850 | Msa1278580 | 0.813773 | 2.160365e-51 | -8.615850e-47 |
| Msa0564850 | Msa1280320 | 0.818915 | 1.527836e-52 | -8.615850e-47 |
| Msa0564850 | Msa1291450 | 0.807637 | 4.585894e-50 | -8.615850e-47 |
| Msa0564850 | Msa1294820 | 0.800824 | 1.202318e-48 | -8.615850e-47 |
| Msa0564850 | Msa1295330 | 0.809394 | 1.934189e-50 | -8.615850e-47 |
| Msa0564850 | Msa1305660 | 0.846166 | 2.576229e-59 | -8.615850e-47 |
| Msa0564850 | Msa1307180 | 0.823876 | 1.093774e-53 | -8.615850e-47 |
| Msa0564850 | Msa1315750 | 0.805808 | 1.116389e-49 | -8.615850e-47 |
| Msa0564850 | Msa1316360 | 0.826704 | 2.344682e-54 | -8.615850e-47 |
| Msa0564850 | Msa1329200 | 0.806497 | 7.992870e-50 | -8.615850e-47 |
| Msa0564850 | Msa1331320 | 0.833822 | 4.276318e-56 | -8.615850e-47 |
| Msa0564850 | Msa1368360 | 0.800664 | 1.296394e-48 | -8.615850e-47 |
| Msa0564850 | Msa1368610 | 0.800059 | 1.721656e-48 | -8.615850e-47 |
| Msa0564850 | Msa1372240 | 0.829793 | 4.219469e-55 | -8.615850e-47 |
| Msa0564850 | Msa1378410 | 0.814780 | 1.293994e-51 | -8.615850e-47 |
| Msa0564850 | Msa1382020 | 0.842489 | 2.507019e-58 | -8.615850e-47 |
| Msa0564850 | Msa1397120 | 0.813944 | 1.980299e-51 | -8.615850e-47 |
| Msa0564850 | Msa1401990 | 0.804072 | 2.574099e-49 | -8.615850e-47 |
| Msa0564850 | Msa1403890 | 0.811714 | 6.097490e-51 | -8.615850e-47 |
| Msa0564850 | Msa1407600 | 0.814446 | 1.534728e-51 | -8.615850e-47 |
| Msa0564850 | Msa1412130 | 0.815060 | 1.121949e-51 | -8.615850e-47 |
| Msa0564850 | Msa1419840 | 0.838299 | 3.122372e-57 | -8.615850e-47 |
| Msa0564850 | Msa1425260 | 0.836117 | 1.129211e-56 | -8.615850e-47 |
| Msa0564850 | Msa1427230 | 0.810864 | 9.322587e-51 | -8.615850e-47 |
| Msa0564850 | Msa1428780 | 0.817028 | 4.077711e-52 | -8.615850e-47 |
| Msa0564850 | Msa1434420 | -0.804769 | 1.842747e-49 | -8.615850e-47 |
| Msa0564850 | Msa1437330 | 0.810917 | 9.078804e-51 | -8.615850e-47 |
| Msa0564850 | Msa1438840 | 0.808080 | 3.692062e-50 | -8.615850e-47 |
| Msa0564850 | Msa1460830 | 0.803438 | 3.485356e-49 | -8.615850e-47 |
| Msa0564850 | Msa1462290 | 0.810770 | 9.770567e-51 | -8.615850e-47 |
| Msa0564850 | Msa1466730 | 0.804356 | 2.246874e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564850 | MtrunA17_Chr8g0379011 | 98.760 | 242 | 3 | 0 | 1 | 242 | 1 | 242 | 1.19e-179 | 493 |
| Msa0564850 | MtrunA17_Chr2g0325591 | 83.594 | 256 | 42 | 0 | 1 | 256 | 1 | 256 | 8.21e-167 | 461 |
| Msa0564850 | MtrunA17_Chr2g0283791 | 82.308 | 260 | 42 | 3 | 1 | 259 | 1 | 257 | 1.58e-157 | 437 |
| Msa0564850 | MtrunA17_Chr2g0316011 | 80.709 | 254 | 48 | 1 | 2 | 255 | 3 | 255 | 1.57e-154 | 430 |
| Msa0564850 | MtrunA17_Chr5g0418971 | 77.959 | 245 | 54 | 0 | 1 | 245 | 1 | 245 | 3.38e-144 | 404 |
| Msa0564850 | MtrunA17_Chr4g0043141 | 74.576 | 236 | 41 | 1 | 26 | 242 | 1 | 236 | 1.08e-128 | 364 |
| Msa0564850 | MtrunA17_Chr5g0426551 | 72.016 | 243 | 66 | 1 | 7 | 247 | 8 | 250 | 9.43e-128 | 362 |
| Msa0564850 | MtrunA17_Chr3g0132301 | 71.774 | 248 | 68 | 2 | 2 | 247 | 3 | 250 | 4.27e-127 | 361 |
| Msa0564850 | MtrunA17_Chr3g0133161 | 65.560 | 241 | 80 | 1 | 7 | 244 | 11 | 251 | 4.36e-115 | 330 |
| Msa0564850 | MtrunA17_Chr1g0164601 | 52.500 | 240 | 108 | 3 | 1 | 237 | 5 | 241 | 2.62e-77 | 234 |
| Msa0564850 | MtrunA17_Chr3g0082111 | 51.667 | 240 | 110 | 3 | 1 | 237 | 35 | 271 | 9.59e-75 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564850 | AT2G42590.2 | 78.544 | 261 | 54 | 1 | 1 | 259 | 1 | 261 | 5.20e-154 | 429 |
| Msa0564850 | AT2G42590.1 | 78.244 | 262 | 54 | 2 | 1 | 259 | 1 | 262 | 3.39e-152 | 425 |
| Msa0564850 | AT2G42590.3 | 78.244 | 262 | 54 | 2 | 1 | 259 | 1 | 262 | 3.89e-152 | 425 |
| Msa0564850 | AT1G26480.1 | 78.279 | 244 | 53 | 0 | 2 | 245 | 5 | 248 | 1.81e-146 | 410 |
| Msa0564850 | AT1G22300.1 | 78.512 | 242 | 52 | 0 | 6 | 247 | 4 | 245 | 4.91e-138 | 389 |
| Msa0564850 | AT1G22300.2 | 78.512 | 242 | 52 | 0 | 6 | 247 | 4 | 245 | 6.25e-138 | 388 |
| Msa0564850 | AT1G34760.1 | 75.732 | 239 | 58 | 0 | 6 | 244 | 4 | 242 | 7.62e-137 | 385 |
| Msa0564850 | AT1G34760.2 | 75.732 | 239 | 58 | 0 | 6 | 244 | 4 | 242 | 1.09e-136 | 385 |
| Msa0564850 | AT1G22300.3 | 78.903 | 237 | 50 | 0 | 6 | 242 | 4 | 240 | 1.32e-135 | 382 |
| Msa0564850 | AT1G35160.1 | 70.968 | 248 | 70 | 1 | 2 | 247 | 6 | 253 | 7.39e-128 | 363 |
| Msa0564850 | AT1G78300.1 | 72.016 | 243 | 66 | 2 | 7 | 247 | 5 | 247 | 2.64e-127 | 362 |
| Msa0564850 | AT1G35160.2 | 72.803 | 239 | 63 | 2 | 2 | 238 | 6 | 244 | 3.23e-126 | 360 |
| Msa0564850 | AT5G38480.3 | 74.167 | 240 | 60 | 2 | 7 | 244 | 4 | 243 | 5.43e-126 | 358 |
| Msa0564850 | AT5G38480.2 | 74.167 | 240 | 60 | 2 | 7 | 244 | 4 | 243 | 5.43e-126 | 358 |
| Msa0564850 | AT4G09000.1 | 72.152 | 237 | 64 | 2 | 7 | 241 | 10 | 246 | 6.58e-126 | 358 |
| Msa0564850 | AT5G38480.1 | 71.542 | 253 | 69 | 3 | 7 | 257 | 4 | 255 | 1.35e-125 | 357 |
| Msa0564850 | AT3G02520.1 | 72.727 | 242 | 62 | 3 | 7 | 244 | 5 | 246 | 7.74e-124 | 353 |
| Msa0564850 | AT3G02520.2 | 72.727 | 242 | 62 | 3 | 7 | 244 | 5 | 246 | 7.74e-124 | 353 |
| Msa0564850 | AT4G09000.2 | 71.130 | 239 | 67 | 2 | 2 | 238 | 5 | 243 | 1.38e-123 | 354 |
| Msa0564850 | AT5G65430.1 | 68.826 | 247 | 74 | 1 | 1 | 244 | 1 | 247 | 5.25e-123 | 350 |
| Msa0564850 | AT5G10450.1 | 68.016 | 247 | 76 | 1 | 1 | 244 | 1 | 247 | 2.20e-122 | 349 |
| Msa0564850 | AT5G65430.2 | 68.852 | 244 | 73 | 1 | 1 | 241 | 1 | 244 | 1.08e-121 | 347 |
| Msa0564850 | AT5G10450.2 | 68.033 | 244 | 75 | 1 | 1 | 241 | 1 | 244 | 4.75e-121 | 345 |
| Msa0564850 | AT5G65430.3 | 69.295 | 241 | 71 | 1 | 1 | 238 | 1 | 241 | 1.65e-120 | 344 |
| Msa0564850 | AT5G10450.3 | 68.465 | 241 | 73 | 1 | 1 | 238 | 1 | 241 | 4.07e-120 | 343 |
| Msa0564850 | AT5G10450.4 | 68.465 | 241 | 73 | 1 | 1 | 238 | 1 | 241 | 1.14e-119 | 343 |
| Msa0564850 | AT5G16050.1 | 66.667 | 249 | 81 | 1 | 1 | 247 | 1 | 249 | 1.85e-116 | 335 |
| Msa0564850 | AT5G16050.2 | 66.667 | 249 | 81 | 1 | 1 | 247 | 1 | 249 | 1.85e-116 | 335 |
| Msa0564850 | AT1G78220.1 | 53.448 | 232 | 107 | 1 | 6 | 236 | 4 | 235 | 4.92e-85 | 254 |
| Msa0564850 | AT1G22290.2 | 50.000 | 214 | 83 | 5 | 6 | 214 | 4 | 198 | 1.69e-57 | 183 |
| Msa0564850 | AT1G22290.1 | 49.763 | 211 | 82 | 5 | 6 | 211 | 4 | 195 | 3.97e-57 | 181 |
| Msa0564850 | AT2G10450.1 | 61.702 | 47 | 17 | 1 | 204 | 249 | 16 | 62 | 3.59e-11 | 58.5 |
Find 92 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGATTATGCAGCTTCTA+AGG | 0.184591 | 4_1:-65607949 | Msa0564850:CDS |
| TTGACGTACATATCTGAAAA+AGG | 0.188396 | 4_1:-65606635 | Msa0564850:three_prime_UTR |
| AGGGGATTATTATCGGTATT+TGG | 0.213214 | 4_1:-65609349 | Msa0564850:CDS |
| ATATGCATACCCTACCTTTC+AGG | 0.217327 | 4_1:+65608128 | None:intergenic |
| TTGAATTTCGAAAATTTCTA+AGG | 0.260949 | 4_1:+65610098 | None:intergenic |
| TAATGATTACCTCCATCTTC+AGG | 0.273259 | 4_1:+65607896 | None:intergenic |
| AGATCAAGATTATATTTATA+AGG | 0.279327 | 4_1:+65606591 | None:intergenic |
| ATCTGATGATGTTCATTCTT+TGG | 0.297722 | 4_1:+65606512 | None:intergenic |
| ACTCAATCCCACGCGCTATA+TGG | 0.314375 | 4_1:+65610196 | None:intergenic |
| AGAACGTAGTGGGTGCTCAT+AGG | 0.371672 | 4_1:-65609575 | Msa0564850:CDS |
| TGGGTGCTCATAGGGCTTCA+TGG | 0.373885 | 4_1:-65609566 | Msa0564850:CDS |
| TCTAAGGTTTGAACATTGAA+TGG | 0.374769 | 4_1:+65610114 | None:intergenic |
| GCATCCCATTCGATTGGGTT+TGG | 0.375573 | 4_1:-65608192 | Msa0564850:CDS |
| GAACAAAAGGTGGAATCTTC+AGG | 0.377055 | 4_1:-65606976 | Msa0564850:CDS |
| TCATTCCATGGAAGCATATC+AGG | 0.381388 | 4_1:-65609286 | Msa0564850:intron |
| AAATGAAAGGGGATTATTAT+CGG | 0.396472 | 4_1:-65609356 | Msa0564850:CDS |
| CCCACGCATCCCATTCGATT+GGG | 0.399932 | 4_1:-65608197 | Msa0564850:CDS |
| CTTATTCCTTCGTCCTCTGC+TGG | 0.408917 | 4_1:-65609402 | Msa0564850:CDS |
| TTTAATAGATGAGGAACAAA+AGG | 0.419748 | 4_1:-65606989 | Msa0564850:intron |
| TTCAGCTTGTTCAGCGAGCT+TGG | 0.427417 | 4_1:+65610006 | None:intergenic |
| TCTATCCTCAATTGAGCATA+AGG | 0.430983 | 4_1:-65609538 | Msa0564850:CDS |
| GGCATGTCACCTTGCTAAGC+AGG | 0.441855 | 4_1:-65608032 | Msa0564850:CDS |
| TTCTTCCTTATGCTCAATTG+AGG | 0.450139 | 4_1:+65609533 | None:intergenic |
| CCCTTCTGCTGCAGTGGAAG+CGG | 0.455549 | 4_1:+65608229 | None:intergenic |
| AATGATTACCTCCATCTTCA+GGG | 0.461652 | 4_1:+65607897 | None:intergenic |
| GAACGTAGTGGGTGCTCATA+GGG | 0.465330 | 4_1:-65609574 | Msa0564850:CDS |
| CTAAGGTTTGAACATTGAAT+GGG | 0.465507 | 4_1:+65610115 | None:intergenic |
| TCCCACGCATCCCATTCGAT+TGG | 0.478060 | 4_1:-65608198 | Msa0564850:CDS |
| AGCATAAGGAAGAATCTAAA+GGG | 0.479531 | 4_1:-65609524 | Msa0564850:CDS |
| CGCTTCCACTGCAGCAGAAG+GGG | 0.482864 | 4_1:-65608228 | Msa0564850:CDS |
| TGATGAAGCAATCTCTGAGT+TGG | 0.491752 | 4_1:-65608005 | Msa0564850:CDS |
| GAGCATAAGGAAGAATCTAA+AGG | 0.492100 | 4_1:-65609525 | Msa0564850:CDS |
| GTGGAATCTTCAGGAGCTGT+TGG | 0.492385 | 4_1:-65606967 | Msa0564850:CDS |
| ACCGCTTCCACTGCAGCAGA+AGG | 0.492609 | 4_1:-65608230 | Msa0564850:CDS |
| ACGTTCCTTGGTGGAAGCCA+TGG | 0.499863 | 4_1:+65610048 | None:intergenic |
| AGATATAAGCTAGGAATTTG+TGG | 0.500000 | 4_1:-65606767 | Msa0564850:three_prime_UTR |
| TATTTGGCGGAATTTAAGAA+TGG | 0.505553 | 4_1:-65609333 | Msa0564850:CDS |
| TGTGAAAAGGGATGTATCAC+TGG | 0.505631 | 4_1:-65606480 | Msa0564850:three_prime_UTR |
| GAGAGAAATCTTCTATCAGT+TGG | 0.508695 | 4_1:-65609603 | Msa0564850:CDS |
| GAAAGTTAGCAGAATTTCCA+TGG | 0.510429 | 4_1:-65610065 | Msa0564850:exon |
| TGTGAATGTGAAGAGGATAA+AGG | 0.513152 | 4_1:-65609496 | Msa0564850:CDS |
| ACGACGGAACATGTTGGTCG+TGG | 0.514792 | 4_1:+65610167 | None:intergenic |
| ACTTCTGACATCCCTGAAGA+TGG | 0.519635 | 4_1:-65607908 | Msa0564850:CDS |
| GATAAAGGAGTATAGACAGA+AGG | 0.521706 | 4_1:-65609481 | Msa0564850:CDS |
| AAAGGAGTATAGACAGAAGG+TGG | 0.524883 | 4_1:-65609478 | Msa0564850:CDS |
| CCCAATCGAATGGGATGCGT+GGG | 0.527885 | 4_1:+65608197 | None:intergenic |
| TAACTCCCCTTCTGCTGCAG+TGG | 0.529859 | 4_1:+65608223 | None:intergenic |
| CGACGGAACATGTTGGTCGT+GGG | 0.531769 | 4_1:+65610168 | None:intergenic |
| AATAGATGAGGAACAAAAGG+TGG | 0.532799 | 4_1:-65606986 | Msa0564850:intron |
| AAAGCCAAACCCAATCGAAT+GGG | 0.542021 | 4_1:+65608188 | None:intergenic |
| GAACAAGCTGAACGTTATGA+AGG | 0.547469 | 4_1:-65609995 | Msa0564850:intron |
| CAAAGCCAAACCCAATCGAA+TGG | 0.549011 | 4_1:+65608187 | None:intergenic |
| ACCCAATCGAATGGGATGCG+TGG | 0.554168 | 4_1:+65608196 | None:intergenic |
| ATTGATTATGCAGCTTCTAA+GGG | 0.556365 | 4_1:-65607948 | Msa0564850:CDS |
| CATCAAATGCCTGCTTAGCA+AGG | 0.556866 | 4_1:+65608023 | None:intergenic |
| AAGAGAAGCAGATATAAGCT+AGG | 0.558918 | 4_1:-65606776 | Msa0564850:three_prime_UTR |
| GAATCTTCAGGAGCTGTTGG+AGG | 0.564663 | 4_1:-65606964 | Msa0564850:CDS |
| CCGCTTCCACTGCAGCAGAA+GGG | 0.566148 | 4_1:-65608229 | Msa0564850:CDS |
| GCAGACCTGATATGCTTCCA+TGG | 0.579067 | 4_1:+65609281 | None:intergenic |
| TCCACTCTCCATATAGCGCG+TGG | 0.586286 | 4_1:-65610204 | Msa0564850:five_prime_UTR |
| GGATTATTATCGGTATTTGG+CGG | 0.591213 | 4_1:-65609346 | Msa0564850:CDS |
| AATCGAATGGGATGCGTGGG+AGG | 0.592219 | 4_1:+65608200 | None:intergenic |
| GAGCATGGGTGGTAAGAATG+TGG | 0.593763 | 4_1:-65606428 | Msa0564850:three_prime_UTR |
| CCCACGCGCTATATGGAGAG+TGG | 0.594125 | 4_1:+65610203 | None:intergenic |
| AAGTTCGTTGCATGAAGTCG+AGG | 0.594539 | 4_1:-65606697 | Msa0564850:three_prime_UTR |
| AGAGGCTGCTGATCATTCCA+TGG | 0.596075 | 4_1:-65609298 | Msa0564850:CDS |
| GACACTAGATTCACCAGCAG+AGG | 0.596973 | 4_1:+65609389 | None:intergenic |
| AGGTTTGAACATTGAATGGG+AGG | 0.600004 | 4_1:+65610118 | None:intergenic |
| GACGGAACATGTTGGTCGTG+GGG | 0.603381 | 4_1:+65610169 | None:intergenic |
| GAATGGTGATGAGCGAAAAG+AGG | 0.603840 | 4_1:-65609316 | Msa0564850:CDS |
| TGCATGAAGTCGAGGTTGCA+TGG | 0.606506 | 4_1:-65606689 | Msa0564850:three_prime_UTR |
| GTTGGCTACAAGAACGTAGT+GGG | 0.620992 | 4_1:-65609585 | Msa0564850:CDS |
| ACGGAACATGTTGGTCGTGG+GGG | 0.622039 | 4_1:+65610170 | None:intergenic |
| TTTGGCATTTAGTATTAACA+AGG | 0.622105 | 4_1:+65606530 | None:intergenic |
| TGTCAGAAGTCCACAATGTG+AGG | 0.623979 | 4_1:+65607921 | None:intergenic |
| AATTTCCATGGCTTCCACCA+AGG | 0.626045 | 4_1:-65610053 | Msa0564850:exon |
| CAAGACAAAGCTACGCACGA+CGG | 0.626208 | 4_1:+65610151 | None:intergenic |
| TTGGCATTTAGTATTAACAA+GGG | 0.630956 | 4_1:+65606531 | None:intergenic |
| TGTTGGAGGTGAAAATGCAT+AGG | 0.631634 | 4_1:-65606950 | Msa0564850:intron |
| CCACTCTCCATATAGCGCGT+GGG | 0.642948 | 4_1:-65610203 | Msa0564850:five_prime_UTR |
| GGTTTGAACATTGAATGGGA+GGG | 0.644058 | 4_1:+65610119 | None:intergenic |
| GATTCACCAGCAGAGGACGA+AGG | 0.655620 | 4_1:+65609396 | None:intergenic |
| TAAGGGACAACCTCACATTG+TGG | 0.657719 | 4_1:-65607931 | Msa0564850:CDS |
| TCTGACATCCCTGAAGATGG+AGG | 0.665639 | 4_1:-65607905 | Msa0564850:intron |
| AGTTGGCTACAAGAACGTAG+TGG | 0.666503 | 4_1:-65609586 | Msa0564850:CDS |
| TGAGTTGGATACTCTGAGTG+AGG | 0.668276 | 4_1:-65607990 | Msa0564850:CDS |
| TTATGTGAAATGAGCATGGG+TGG | 0.673406 | 4_1:-65606439 | Msa0564850:three_prime_UTR |
| CTACGCACGACGGAACATGT+TGG | 0.679969 | 4_1:+65610161 | None:intergenic |
| GCTAGATGTTGAGTTGACAG+TGG | 0.686884 | 4_1:-65609628 | Msa0564850:CDS |
| GGAATGATGTGAATGTGAAG+AGG | 0.689723 | 4_1:-65609503 | Msa0564850:CDS |
| GTGCTCATAGGGCTTCATGG+AGG | 0.700802 | 4_1:-65609563 | Msa0564850:CDS |
| GGTGGAAGCAATGAAGAATG+TGG | 0.728314 | 4_1:-65609655 | Msa0564850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATCATAAAAAAAAAAAA+GGG | + | chr4_1:65606730-65606749 | None:intergenic | 10.0% |
| !! | AATCATCATAAAAAAAAAAA+AGG | + | chr4_1:65606731-65606750 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTGATAGAATTA+AGG | - | chr4_1:65608746-65608765 | Msa0564850:intron | 10.0% |
| !! | TCATCATAAAAAAAAAAAAG+GGG | + | chr4_1:65606729-65606748 | None:intergenic | 15.0% |
| !!! | TCTTTTTCTATAAAATGAAA+GGG | - | chr4_1:65607175-65607194 | Msa0564850:intron | 15.0% |
| !!! | TAAAATCAATTTTATGTGTT+TGG | + | chr4_1:65607757-65607776 | None:intergenic | 15.0% |
| !!! | AAAAATTGATTTTGGATAAA+AGG | + | chr4_1:65607900-65607919 | None:intergenic | 15.0% |
| !! | TCAAATAAAAATAAACGATT+CGG | + | chr4_1:65608738-65608757 | None:intergenic | 15.0% |
| !!! | TTTTTTAAATATTATGGAAG+AGG | - | chr4_1:65609318-65609337 | Msa0564850:CDS | 15.0% |
| !! | AGATCAAGATTATATTTATA+AGG | + | chr4_1:65609955-65609974 | None:intergenic | 15.0% |
| !!! | TTATGTCTTTTTTTTTAAGA+GGG | - | chr4_1:65610183-65610202 | Msa0564850:five_prime_UTR | 15.0% |
| !! | TTGAATTTCGAAAATTTCTA+AGG | + | chr4_1:65606448-65606467 | None:intergenic | 20.0% |
| !! | AAAATGGAAGTTAAGAAAAT+GGG | + | chr4_1:65606577-65606596 | None:intergenic | 20.0% |
| !! | AAAAATGGAAGTTAAGAAAA+TGG | + | chr4_1:65606578-65606597 | None:intergenic | 20.0% |
| !! | ACTATTAAATCTCAATACAT+AGG | + | chr4_1:65606635-65606654 | None:intergenic | 20.0% |
| !!! | TTTATTTCAATTCTGTTTCT+TGG | - | chr4_1:65606697-65606716 | Msa0564850:three_prime_UTR | 20.0% |
| !! | CATCATAAAAAAAAAAAAGG+GGG | + | chr4_1:65606728-65606747 | None:intergenic | 20.0% |
| !!! | TTGAAATTTTCATTGTGTTT+TGG | - | chr4_1:65606770-65606789 | Msa0564850:three_prime_UTR | 20.0% |
| !! | ATTGATGAAGAAATTGAAAT+TGG | - | chr4_1:65606794-65606813 | Msa0564850:three_prime_UTR | 20.0% |
| !! | TTGATGAAGAAATTGAAATT+GGG | - | chr4_1:65606795-65606814 | Msa0564850:intron | 20.0% |
| !!! | GTTGTATATTTTTACTGTTT+TGG | - | chr4_1:65606854-65606873 | Msa0564850:intron | 20.0% |
| !!! | GTCTTTTTCTATAAAATGAA+AGG | - | chr4_1:65607174-65607193 | Msa0564850:intron | 20.0% |
| !!! | CTTTTTCTATAAAATGAAAG+GGG | - | chr4_1:65607176-65607195 | Msa0564850:intron | 20.0% |
| !!! | TATATCTTTGCCATTTAAAA+TGG | - | chr4_1:65607302-65607321 | Msa0564850:intron | 20.0% |
| !!! | AGAATTGATTTTGAAATGTT+TGG | - | chr4_1:65607502-65607521 | Msa0564850:intron | 20.0% |
| !! | CAGTTATAGGATAAATATAA+AGG | + | chr4_1:65608139-65608158 | None:intergenic | 20.0% |
| !! | TTATGAATTATCAGATTAAC+AGG | + | chr4_1:65608284-65608303 | None:intergenic | 20.0% |
| !! | ATAGAATTAAGGATGAAAAT+AGG | - | chr4_1:65608757-65608776 | Msa0564850:intron | 20.0% |
| !! | TATCTGTATTTACTTTAAGT+AGG | + | chr4_1:65608934-65608953 | None:intergenic | 20.0% |
| !! | TTAAATATGTGAAAAACTGA+TGG | + | chr4_1:65609053-65609072 | None:intergenic | 20.0% |
| !!! | TCAGTTTTTCACATATTTAA+AGG | - | chr4_1:65609053-65609072 | Msa0564850:intron | 20.0% |
| !! | AAATTATAAAGAAAATAGCC+AGG | + | chr4_1:65609504-65609523 | None:intergenic | 20.0% |
| !!! | TTTTCATATCTGTTTTCTTT+TGG | - | chr4_1:65609657-65609676 | Msa0564850:CDS | 20.0% |
| !!! | AAACATAACTTTTGTTAAGT+CGG | + | chr4_1:65609702-65609721 | None:intergenic | 20.0% |
| !!! | AAACATAACTTTTGTTAAGT+CGG | + | chr4_1:65609702-65609721 | None:intergenic | 20.0% |
| !! | AAAAAAAGACATAAGAAAAG+AGG | + | chr4_1:65610177-65610196 | None:intergenic | 20.0% |
| !!! | CTTATGTCTTTTTTTTTAAG+AGG | - | chr4_1:65610182-65610201 | Msa0564850:five_prime_UTR | 20.0% |
| ! | GTGAACTTTATGAGAAAAAA+TGG | + | chr4_1:65606593-65606612 | None:intergenic | 25.0% |
| ! | AAACATTAAGCTTAGAACAT+TGG | + | chr4_1:65606660-65606679 | None:intergenic | 25.0% |
| ! | AAATGAAAGGGGATTATTAT+CGG | - | chr4_1:65607187-65607206 | Msa0564850:intron | 25.0% |
| !! | AACATCAAGTCCATTTTAAA+TGG | + | chr4_1:65607315-65607334 | None:intergenic | 25.0% |
| ! | AAGTGAATTAAAGAAGCTAA+GGG | + | chr4_1:65607428-65607447 | None:intergenic | 25.0% |
| !!! | CGAGATAAAATTGATTTTAG+AGG | - | chr4_1:65607476-65607495 | Msa0564850:intron | 25.0% |
| !! | TTGATTTTGTCTTCAGAATT+TGG | - | chr4_1:65607541-65607560 | Msa0564850:intron | 25.0% |
| ! | ATGATACATTCATGTAAAAG+TGG | + | chr4_1:65607615-65607634 | None:intergenic | 25.0% |
| ! | AGCTAAAAGCTACAAATAAT+AGG | + | chr4_1:65607840-65607859 | None:intergenic | 25.0% |
| ! | TTGAGTTAAAAAATCTCGTT+TGG | + | chr4_1:65607863-65607882 | None:intergenic | 25.0% |
| !!! | ATGATTTGTAGTTCATTTTG+TGG | - | chr4_1:65608014-65608033 | Msa0564850:CDS | 25.0% |
| ! | AATATCTTATCAGAGATCAT+AGG | + | chr4_1:65608162-65608181 | None:intergenic | 25.0% |
| ! | AAAAATATCACCAAAGTTTC+AGG | + | chr4_1:65608467-65608486 | None:intergenic | 25.0% |
| !!! | AAAAAAGTATGTTCTAGCTT+GGG | + | chr4_1:65608815-65608834 | None:intergenic | 25.0% |
| !! | AAAAAAAGTATGTTCTAGCT+TGG | + | chr4_1:65608816-65608835 | None:intergenic | 25.0% |
| ! | TGAAAAGCTTGACAAATTTA+TGG | + | chr4_1:65609008-65609027 | None:intergenic | 25.0% |
| !! | ATAAAGTCAGATTTTCTAGA+AGG | - | chr4_1:65609101-65609120 | Msa0564850:intron | 25.0% |
| !! | ATGCAATTTGTTTATGTAAC+TGG | - | chr4_1:65609193-65609212 | Msa0564850:intron | 25.0% |
| !!! | ATTTGATTTTGAACACGTTA+AGG | + | chr4_1:65609242-65609261 | None:intergenic | 25.0% |
| ! | AATAAGTACATAAGAAACTG+AGG | + | chr4_1:65609266-65609285 | None:intergenic | 25.0% |
| ! | AAAATATGAGTAAAGTTGAC+AGG | + | chr4_1:65609466-65609485 | None:intergenic | 25.0% |
| ! | TTTAATAGATGAGGAACAAA+AGG | - | chr4_1:65609554-65609573 | Msa0564850:CDS | 25.0% |
| ! | TTGGCATTTAGTATTAACAA+GGG | + | chr4_1:65610015-65610034 | None:intergenic | 25.0% |
| ! | TTTGGCATTTAGTATTAACA+AGG | + | chr4_1:65610016-65610035 | None:intergenic | 25.0% |
| !!! | AGATTCATTTTAGTGTGAAA+AGG | - | chr4_1:65610050-65610069 | Msa0564850:exon | 25.0% |
| !!! | GATTCATTTTAGTGTGAAAA+GGG | - | chr4_1:65610051-65610070 | Msa0564850:exon | 25.0% |
| !! | ATTTTATGTGAAATGAGCAT+GGG | - | chr4_1:65610101-65610120 | Msa0564850:five_prime_UTR | 25.0% |
| CTAAGGTTTGAACATTGAAT+GGG | + | chr4_1:65606431-65606450 | None:intergenic | 30.0% | |
| ! | TCTAAGGTTTGAACATTGAA+TGG | + | chr4_1:65606432-65606451 | None:intergenic | 30.0% |
| !!! | ACTGTTTTGGTTGATAGAAA+TGG | - | chr4_1:65606867-65606886 | Msa0564850:intron | 30.0% |
| AGCATAAGGAAGAATCTAAA+GGG | - | chr4_1:65607019-65607038 | Msa0564850:intron | 30.0% | |
| TATTTGGCGGAATTTAAGAA+TGG | - | chr4_1:65607210-65607229 | Msa0564850:intron | 30.0% | |
| CAAGTGAATTAAAGAAGCTA+AGG | + | chr4_1:65607429-65607448 | None:intergenic | 30.0% | |
| ATTCACTTGTCTTGTATGTT+TGG | - | chr4_1:65607440-65607459 | Msa0564850:intron | 30.0% | |
| !! | TGTATGTTTGGTTTCACTTT+TGG | - | chr4_1:65607452-65607471 | Msa0564850:intron | 30.0% |
| TGGATTGAACAATGAATTCA+AGG | + | chr4_1:65607595-65607614 | None:intergenic | 30.0% | |
| !! | TATGTGTTTGGAATCACTTT+TGG | + | chr4_1:65607745-65607764 | None:intergenic | 30.0% |
| ! | AATAGACACACTTGATTTTG+CGG | + | chr4_1:65607927-65607946 | None:intergenic | 30.0% |
| TCTCTTTAATGTGTTTCATG+TGG | - | chr4_1:65608066-65608085 | Msa0564850:intron | 30.0% | |
| ATTATCAGATTAACAGGACT+TGG | + | chr4_1:65608278-65608297 | None:intergenic | 30.0% | |
| ! | AAATTTTGAACTCTCCTGAA+AGG | - | chr4_1:65608401-65608420 | Msa0564850:intron | 30.0% |
| ATTGATTATGCAGCTTCTAA+GGG | - | chr4_1:65608595-65608614 | Msa0564850:intron | 30.0% | |
| !! | TTCTTTTCTAGTATGTTAGC+TGG | - | chr4_1:65608683-65608702 | Msa0564850:intron | 30.0% |
| !! | AAAAAGTATGTTCTAGCTTG+GGG | + | chr4_1:65608814-65608833 | None:intergenic | 30.0% |
| !! | GTCTAGTCTTTTAGCTAAAT+AGG | + | chr4_1:65608873-65608892 | None:intergenic | 30.0% |
| TGTATTTACTTTAAGTAGGC+CGG | + | chr4_1:65608930-65608949 | None:intergenic | 30.0% | |
| AATATGTGAAAAACTGATGG+AGG | + | chr4_1:65609050-65609069 | None:intergenic | 30.0% | |
| TTTGTTTATGTAACTGGTAG+TGG | - | chr4_1:65609199-65609218 | Msa0564850:intron | 30.0% | |
| TAAACAGATCGCTTAATTGT+TGG | + | chr4_1:65609416-65609435 | None:intergenic | 30.0% | |
| !! | TTTGCTGTTATTTCAAAACC+TGG | - | chr4_1:65609483-65609502 | Msa0564850:CDS | 30.0% |
| CCTCATCTATTAAAAAAACG+AGG | + | chr4_1:65609548-65609567 | None:intergenic | 30.0% | |
| !!! | CCTCGTTTTTTTAATAGATG+AGG | - | chr4_1:65609545-65609564 | Msa0564850:CDS | 30.0% |
| AACTAGATTTGATCAGAGTT+CGG | + | chr4_1:65609632-65609651 | None:intergenic | 30.0% | |
| AGATATAAGCTAGGAATTTG+TGG | - | chr4_1:65609776-65609795 | Msa0564850:intron | 30.0% | |
| TTGACGTACATATCTGAAAA+AGG | - | chr4_1:65609908-65609927 | Msa0564850:intron | 30.0% | |
| TGACGTACATATCTGAAAAA+GGG | - | chr4_1:65609909-65609928 | Msa0564850:intron | 30.0% | |
| ! | ATCTGATGATGTTCATTCTT+TGG | + | chr4_1:65610034-65610053 | None:intergenic | 30.0% |
| ! | CATTTTATGTGAAATGAGCA+TGG | - | chr4_1:65610100-65610119 | Msa0564850:five_prime_UTR | 30.0% |
| GAAAGTTAGCAGAATTTCCA+TGG | - | chr4_1:65606478-65606497 | Msa0564850:three_prime_UTR | 35.0% | |
| !!! | GTTTTGGTTGATAGAAATGG+TGG | - | chr4_1:65606870-65606889 | Msa0564850:intron | 35.0% |
| GAGAGAAATCTTCTATCAGT+TGG | - | chr4_1:65606940-65606959 | Msa0564850:intron | 35.0% | |
| TCTATCCTCAATTGAGCATA+AGG | - | chr4_1:65607005-65607024 | Msa0564850:intron | 35.0% | |
| TTCTTCCTTATGCTCAATTG+AGG | + | chr4_1:65607013-65607032 | None:intergenic | 35.0% | |
| GAGCATAAGGAAGAATCTAA+AGG | - | chr4_1:65607018-65607037 | Msa0564850:intron | 35.0% | |
| TGTGAATGTGAAGAGGATAA+AGG | - | chr4_1:65607047-65607066 | Msa0564850:intron | 35.0% | |
| ! | GATAAAGGAGTATAGACAGA+AGG | - | chr4_1:65607062-65607081 | Msa0564850:intron | 35.0% |
| AGGGGATTATTATCGGTATT+TGG | - | chr4_1:65607194-65607213 | Msa0564850:intron | 35.0% | |
| GGATTATTATCGGTATTTGG+CGG | - | chr4_1:65607197-65607216 | Msa0564850:intron | 35.0% | |
| ! | TTGATGTTTTCTGCCTATGA+TGG | - | chr4_1:65607327-65607346 | Msa0564850:intron | 35.0% |
| ACACACATGATAACCATCAT+AGG | + | chr4_1:65607343-65607362 | None:intergenic | 35.0% | |
| ATGTCTATCTTAACTGAGGA+TGG | - | chr4_1:65607385-65607404 | Msa0564850:intron | 35.0% | |
| !! | GCGGTGACAAAAATTGATTT+TGG | + | chr4_1:65607908-65607927 | None:intergenic | 35.0% |
| ATATCACCTATGACAAGTAC+CGG | + | chr4_1:65607956-65607975 | None:intergenic | 35.0% | |
| TGTTTCATGTGGAGATAAGA+GGG | - | chr4_1:65608077-65608096 | Msa0564850:intron | 35.0% | |
| TGCAACACTCATTTGAATGA+AGG | - | chr4_1:65608196-65608215 | Msa0564850:CDS | 35.0% | |
| TTTGAACTCTCCTGAAACTT+TGG | - | chr4_1:65608454-65608473 | Msa0564850:intron | 35.0% | |
| ATGACACTCCTCATATTTCA+GGG | - | chr4_1:65608490-65608509 | Msa0564850:intron | 35.0% | |
| ! | CATTGATTATGCAGCTTCTA+AGG | - | chr4_1:65608594-65608613 | Msa0564850:intron | 35.0% |
| AATGATTACCTCCATCTTCA+GGG | + | chr4_1:65608649-65608668 | None:intergenic | 35.0% | |
| TAATGATTACCTCCATCTTC+AGG | + | chr4_1:65608650-65608669 | None:intergenic | 35.0% | |
| TAGCTAAAAGACTAGACTTC+TGG | - | chr4_1:65608876-65608895 | Msa0564850:intron | 35.0% | |
| TGGCTACCAAAAAATCCATT+TGG | - | chr4_1:65608896-65608915 | Msa0564850:intron | 35.0% | |
| GGCTACCAAAAAATCCATTT+GGG | - | chr4_1:65608897-65608916 | Msa0564850:intron | 35.0% | |
| ! | TACCAGATTTTCTATGCTGT+AGG | - | chr4_1:65609158-65609177 | Msa0564850:intron | 35.0% |
| TTCCTACAGCATAGAAAATC+TGG | + | chr4_1:65609163-65609182 | None:intergenic | 35.0% | |
| !! | CAGTTTTGACATTTTCGTCA+TGG | - | chr4_1:65609437-65609456 | Msa0564850:CDS | 35.0% |
| AATAGATGAGGAACAAAAGG+TGG | - | chr4_1:65609557-65609576 | Msa0564850:CDS | 35.0% | |
| AAGAGAAGCAGATATAAGCT+AGG | - | chr4_1:65609767-65609786 | Msa0564850:intron | 35.0% | |
| GGTTTGAACATTGAATGGGA+GGG | + | chr4_1:65606427-65606446 | None:intergenic | 40.0% | |
| AGGTTTGAACATTGAATGGG+AGG | + | chr4_1:65606428-65606447 | None:intergenic | 40.0% | |
| GAACAAGCTGAACGTTATGA+AGG | - | chr4_1:65606548-65606567 | Msa0564850:three_prime_UTR | 40.0% | |
| GGAATGATGTGAATGTGAAG+AGG | - | chr4_1:65607040-65607059 | Msa0564850:intron | 40.0% | |
| ! | AAAGGAGTATAGACAGAAGG+TGG | - | chr4_1:65607065-65607084 | Msa0564850:intron | 40.0% |
| ! | TCATTCCATGGAAGCATATC+AGG | - | chr4_1:65607257-65607276 | Msa0564850:intron | 40.0% |
| GATGGTTATCATGTGTGTTG+TGG | - | chr4_1:65607345-65607364 | Msa0564850:intron | 40.0% | |
| GTTGTGGATATGTAGTTGCT+TGG | - | chr4_1:65607361-65607380 | Msa0564850:intron | 40.0% | |
| TGGCATGTCTATCTTAACTG+AGG | - | chr4_1:65607381-65607400 | Msa0564850:intron | 40.0% | |
| TTTGTCACCTCAGAACCAAA+CGG | - | chr4_1:65607708-65607727 | Msa0564850:intron | 40.0% | |
| !! | AAGTGTGTCTATTTCTGAGC+CGG | - | chr4_1:65607934-65607953 | Msa0564850:CDS | 40.0% |
| CATAGGTGATATGAGCTTTG+AGG | - | chr4_1:65607964-65607983 | Msa0564850:CDS | 40.0% | |
| !! | ATGAGCTTTGAGGACTTGTT+AGG | - | chr4_1:65607974-65607993 | Msa0564850:CDS | 40.0% |
| ! | ACTTGTTAGGTAGGAGAAAG+TGG | - | chr4_1:65607987-65608006 | Msa0564850:CDS | 40.0% |
| GTGTTTCATGTGGAGATAAG+AGG | - | chr4_1:65608076-65608095 | Msa0564850:intron | 40.0% | |
| GTTTCATGTGGAGATAAGAG+GGG | - | chr4_1:65608078-65608097 | Msa0564850:intron | 40.0% | |
| TTTCATGTGGAGATAAGAGG+GGG | - | chr4_1:65608079-65608098 | Msa0564850:intron | 40.0% | |
| CAGAGATCATAGGCAGTTAT+AGG | + | chr4_1:65608152-65608171 | None:intergenic | 40.0% | |
| AAAGCCAAACCCAATCGAAT+GGG | + | chr4_1:65608358-65608377 | None:intergenic | 40.0% | |
| TTTGAACTCTCCTGAAAGGT+AGG | - | chr4_1:65608405-65608424 | Msa0564850:intron | 40.0% | |
| TTGAACTCTCCTGAAAGGTA+GGG | - | chr4_1:65608406-65608425 | Msa0564850:intron | 40.0% | |
| ATATGCATACCCTACCTTTC+AGG | + | chr4_1:65608418-65608437 | None:intergenic | 40.0% | |
| CATGACACTCCTCATATTTC+AGG | - | chr4_1:65608489-65608508 | Msa0564850:intron | 40.0% | |
| TGATGAAGCAATCTCTGAGT+TGG | - | chr4_1:65608538-65608557 | Msa0564850:intron | 40.0% | |
| ! | GACTCGATCTGAAATGTGAA+TGG | - | chr4_1:65608705-65608724 | Msa0564850:intron | 40.0% |
| AAATAGGTCAAACCAACCGA+CGG | - | chr4_1:65608773-65608792 | Msa0564850:intron | 40.0% | |
| !!! | TGAGGCCCAAATGGATTTTT+TGG | + | chr4_1:65608905-65608924 | None:intergenic | 40.0% |
| TCAAAATCCATGAACAAGCG+AGG | - | chr4_1:65609364-65609383 | Msa0564850:CDS | 40.0% | |
| CAAAATCCATGAACAAGCGA+GGG | - | chr4_1:65609365-65609384 | Msa0564850:CDS | 40.0% | |
| AAAATCCATGAACAAGCGAG+GGG | - | chr4_1:65609366-65609385 | Msa0564850:CDS | 40.0% | |
| GAACAAAAGGTGGAATCTTC+AGG | - | chr4_1:65609567-65609586 | Msa0564850:CDS | 40.0% | |
| TGTTGGAGGTGAAAATGCAT+AGG | - | chr4_1:65609593-65609612 | Msa0564850:CDS | 40.0% | |
| TGTGAAAAGGGATGTATCAC+TGG | - | chr4_1:65610063-65610082 | Msa0564850:exon | 40.0% | |
| TTATGTGAAATGAGCATGGG+TGG | - | chr4_1:65610104-65610123 | Msa0564850:five_prime_UTR | 40.0% | |
| AATTTCCATGGCTTCCACCA+AGG | - | chr4_1:65606490-65606509 | Msa0564850:three_prime_UTR | 45.0% | |
| ! | GAAGTTTTCACGTTCCTTGG+TGG | + | chr4_1:65606507-65606526 | None:intergenic | 45.0% |
| ! | GACGAAGTTTTCACGTTCCT+TGG | + | chr4_1:65606510-65606529 | None:intergenic | 45.0% |
| GGTGGAAGCAATGAAGAATG+TGG | - | chr4_1:65606888-65606907 | Msa0564850:intron | 45.0% | |
| !! | GCTAGATGTTGAGTTGACAG+TGG | - | chr4_1:65606915-65606934 | Msa0564850:intron | 45.0% |
| AGTTGGCTACAAGAACGTAG+TGG | - | chr4_1:65606957-65606976 | Msa0564850:CDS | 45.0% | |
| GTTGGCTACAAGAACGTAGT+GGG | - | chr4_1:65606958-65606977 | Msa0564850:CDS | 45.0% | |
| ! | GAATGGTGATGAGCGAAAAG+AGG | - | chr4_1:65607227-65607246 | Msa0564850:intron | 45.0% |
| ACCTCAGAACCAAACGGTTT+AGG | - | chr4_1:65607714-65607733 | Msa0564850:intron | 45.0% | |
| !! | TCCTAAACCGTTTGGTTCTG+AGG | + | chr4_1:65607718-65607737 | None:intergenic | 45.0% |
| ! | TTGGCTCTTCCTAAACCGTT+TGG | + | chr4_1:65607726-65607745 | None:intergenic | 45.0% |
| !! | GCTTTGAGGACTTGTTAGGT+AGG | - | chr4_1:65607978-65607997 | Msa0564850:CDS | 45.0% |
| GGCATCAACCAATGTGAAGT+TGG | - | chr4_1:65608217-65608236 | Msa0564850:CDS | 45.0% | |
| CTCAACAGCCAACTTCACAT+TGG | + | chr4_1:65608228-65608247 | None:intergenic | 45.0% | |
| CAAAGCCAAACCCAATCGAA+TGG | + | chr4_1:65608359-65608378 | None:intergenic | 45.0% | |
| GTGACATGCCCTGAAATATG+AGG | + | chr4_1:65608501-65608520 | None:intergenic | 45.0% | |
| CATCAAATGCCTGCTTAGCA+AGG | + | chr4_1:65608523-65608542 | None:intergenic | 45.0% | |
| ! | TGAGTTGGATACTCTGAGTG+AGG | - | chr4_1:65608553-65608572 | Msa0564850:intron | 45.0% |
| TAAGGGACAACCTCACATTG+TGG | - | chr4_1:65608612-65608631 | Msa0564850:intron | 45.0% | |
| TGTCAGAAGTCCACAATGTG+AGG | + | chr4_1:65608625-65608644 | None:intergenic | 45.0% | |
| ACTTCTGACATCCCTGAAGA+TGG | - | chr4_1:65608635-65608654 | Msa0564850:intron | 45.0% | |
| AATAGGTCAAACCAACCGAC+GGG | - | chr4_1:65608774-65608793 | Msa0564850:intron | 45.0% | |
| !! | GTATGTTCTAGCTTGGGGTA+GGG | + | chr4_1:65608809-65608828 | None:intergenic | 45.0% |
| !! | AGTATGTTCTAGCTTGGGGT+AGG | + | chr4_1:65608810-65608829 | None:intergenic | 45.0% |
| TGTGAAAAACTGATGGAGGC+TGG | + | chr4_1:65609046-65609065 | None:intergenic | 45.0% | |
| GGAGGTGAAAATGCATAGGT+AGG | - | chr4_1:65609597-65609616 | Msa0564850:CDS | 45.0% | |
| AAGTTCGTTGCATGAAGTCG+AGG | - | chr4_1:65609846-65609865 | Msa0564850:intron | 45.0% | |
| !!! | AAAACATTTTTTAAATATTA+TGG | - | chr4_1:65609312-65609331 | Msa0564850:CDS | 5.0% |
| ACTCAATCCCACGCGCTATA+TGG | + | chr4_1:65606350-65606369 | None:intergenic | 50.0% | |
| CAAGACAAAGCTACGCACGA+CGG | + | chr4_1:65606395-65606414 | None:intergenic | 50.0% | |
| ! | TTCAGCTTGTTCAGCGAGCT+TGG | + | chr4_1:65606540-65606559 | None:intergenic | 50.0% |
| !! | AGAACGTAGTGGGTGCTCAT+AGG | - | chr4_1:65606968-65606987 | Msa0564850:CDS | 50.0% |
| !! | GAACGTAGTGGGTGCTCATA+GGG | - | chr4_1:65606969-65606988 | Msa0564850:CDS | 50.0% |
| CTTATTCCTTCGTCCTCTGC+TGG | - | chr4_1:65607141-65607160 | Msa0564850:intron | 50.0% | |
| GACACTAGATTCACCAGCAG+AGG | + | chr4_1:65607157-65607176 | None:intergenic | 50.0% | |
| AGAGGCTGCTGATCATTCCA+TGG | - | chr4_1:65607245-65607264 | Msa0564850:intron | 50.0% | |
| GCAGACCTGATATGCTTCCA+TGG | + | chr4_1:65607265-65607284 | None:intergenic | 50.0% | |
| TCTGAGCCGGTACTTGTCAT+AGG | - | chr4_1:65607947-65607966 | Msa0564850:CDS | 50.0% | |
| GCATCCCATTCGATTGGGTT+TGG | - | chr4_1:65608351-65608370 | Msa0564850:intron | 50.0% | |
| TCTGACATCCCTGAAGATGG+AGG | - | chr4_1:65608638-65608657 | Msa0564850:intron | 50.0% | |
| AATCCATTTGGGCCTCAGAC+CGG | - | chr4_1:65608908-65608927 | Msa0564850:intron | 50.0% | |
| ACTTTAAGTAGGCCGGTCTG+AGG | + | chr4_1:65608923-65608942 | None:intergenic | 50.0% | |
| GTGGAATCTTCAGGAGCTGT+TGG | - | chr4_1:65609576-65609595 | Msa0564850:CDS | 50.0% | |
| GAATCTTCAGGAGCTGTTGG+AGG | - | chr4_1:65609579-65609598 | Msa0564850:CDS | 50.0% | |
| TGCATGAAGTCGAGGTTGCA+TGG | - | chr4_1:65609854-65609873 | Msa0564850:intron | 50.0% | |
| GAGCATGGGTGGTAAGAATG+TGG | - | chr4_1:65610115-65610134 | Msa0564850:five_prime_UTR | 50.0% | |
| TCCACTCTCCATATAGCGCG+TGG | - | chr4_1:65606339-65606358 | Msa0564850:three_prime_UTR | 55.0% | |
| CCACTCTCCATATAGCGCGT+GGG | - | chr4_1:65606340-65606359 | Msa0564850:three_prime_UTR | 55.0% | |
| ACGGAACATGTTGGTCGTGG+GGG | + | chr4_1:65606376-65606395 | None:intergenic | 55.0% | |
| GACGGAACATGTTGGTCGTG+GGG | + | chr4_1:65606377-65606396 | None:intergenic | 55.0% | |
| CGACGGAACATGTTGGTCGT+GGG | + | chr4_1:65606378-65606397 | None:intergenic | 55.0% | |
| ACGACGGAACATGTTGGTCG+TGG | + | chr4_1:65606379-65606398 | None:intergenic | 55.0% | |
| CTACGCACGACGGAACATGT+TGG | + | chr4_1:65606385-65606404 | None:intergenic | 55.0% | |
| ACGTTCCTTGGTGGAAGCCA+TGG | + | chr4_1:65606498-65606517 | None:intergenic | 55.0% | |
| TGGGTGCTCATAGGGCTTCA+TGG | - | chr4_1:65606977-65606996 | Msa0564850:CDS | 55.0% | |
| GTGCTCATAGGGCTTCATGG+AGG | - | chr4_1:65606980-65606999 | Msa0564850:CDS | 55.0% | |
| GATTCACCAGCAGAGGACGA+AGG | + | chr4_1:65607150-65607169 | None:intergenic | 55.0% | |
| TAACTCCCCTTCTGCTGCAG+TGG | + | chr4_1:65608323-65608342 | None:intergenic | 55.0% | |
| AATCGAATGGGATGCGTGGG+AGG | + | chr4_1:65608346-65608365 | None:intergenic | 55.0% | |
| TCCCACGCATCCCATTCGAT+TGG | - | chr4_1:65608345-65608364 | Msa0564850:intron | 55.0% | |
| CCCAATCGAATGGGATGCGT+GGG | + | chr4_1:65608349-65608368 | None:intergenic | 55.0% | |
| CCCACGCATCCCATTCGATT+GGG | - | chr4_1:65608346-65608365 | Msa0564850:intron | 55.0% | |
| ACCCAATCGAATGGGATGCG+TGG | + | chr4_1:65608350-65608369 | None:intergenic | 55.0% | |
| GGCATGTCACCTTGCTAAGC+AGG | - | chr4_1:65608511-65608530 | Msa0564850:intron | 55.0% | |
| GAATGCCCCTCGCTTGTTCA+TGG | + | chr4_1:65609374-65609393 | None:intergenic | 55.0% | |
| CCCACGCGCTATATGGAGAG+TGG | + | chr4_1:65606343-65606362 | None:intergenic | 60.0% | |
| GAACATGTTGGTCGTGGGGG+AGG | + | chr4_1:65606373-65606392 | None:intergenic | 60.0% | |
| ACCGCTTCCACTGCAGCAGA+AGG | - | chr4_1:65608313-65608332 | Msa0564850:intron | 60.0% | |
| CCCTTCTGCTGCAGTGGAAG+CGG | + | chr4_1:65608317-65608336 | None:intergenic | 60.0% | |
| CCGCTTCCACTGCAGCAGAA+GGG | - | chr4_1:65608314-65608333 | Msa0564850:intron | 60.0% | |
| CGCTTCCACTGCAGCAGAAG+GGG | - | chr4_1:65608315-65608334 | Msa0564850:intron | 60.0% | |
| AACCAACCGACGGGAGCCAC+TGG | - | chr4_1:65608783-65608802 | Msa0564850:intron | 65.0% | |
| CTAGCTTGGGGTAGGGCCAG+TGG | + | chr4_1:65608802-65608821 | None:intergenic | 65.0% | |
| ! | AGGCCGGTCTGAGGCCCAAA+TGG | + | chr4_1:65608914-65608933 | None:intergenic | 65.0% |
| GTAGGGCCAGTGGCTCCCGT+CGG | + | chr4_1:65608792-65608811 | None:intergenic | 70.0% | |
| GGCCAGTGGCTCCCGTCGGT+TGG | + | chr4_1:65608788-65608807 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 65606325 | 65610240 | 65606325 | ID=Msa0564850;Name=Msa0564850 |
| chr4_1 | mRNA | 65606325 | 65610240 | 65606325 | ID=Msa0564850-mRNA-1;Parent=Msa0564850;Name=Msa0564850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=172|1|1|1|0.8|0.83|6|489|259 |
| chr4_1 | exon | 65606325 | 65606813 | 65606325 | ID=Msa0564850-mRNA-1:exon:21185;Parent=Msa0564850-mRNA-1 |
| chr4_1 | exon | 65606951 | 65607003 | 65606951 | ID=Msa0564850-mRNA-1:exon:21184;Parent=Msa0564850-mRNA-1 |
| chr4_1 | exon | 65607906 | 65608054 | 65607906 | ID=Msa0564850-mRNA-1:exon:21183;Parent=Msa0564850-mRNA-1 |
| chr4_1 | exon | 65608143 | 65608252 | 65608143 | ID=Msa0564850-mRNA-1:exon:21182;Parent=Msa0564850-mRNA-1 |
| chr4_1 | exon | 65609287 | 65609681 | 65609287 | ID=Msa0564850-mRNA-1:exon:21181;Parent=Msa0564850-mRNA-1 |
| chr4_1 | exon | 65609996 | 65610240 | 65609996 | ID=Msa0564850-mRNA-1:exon:21180;Parent=Msa0564850-mRNA-1 |
| chr4_1 | five_prime_UTR | 65610069 | 65610240 | 65610069 | ID=Msa0564850-mRNA-1:five_prime_utr;Parent=Msa0564850-mRNA-1 |
| chr4_1 | CDS | 65609996 | 65610068 | 65609996 | ID=Msa0564850-mRNA-1:cds;Parent=Msa0564850-mRNA-1 |
| chr4_1 | CDS | 65609287 | 65609681 | 65609287 | ID=Msa0564850-mRNA-1:cds;Parent=Msa0564850-mRNA-1 |
| chr4_1 | CDS | 65608143 | 65608252 | 65608143 | ID=Msa0564850-mRNA-1:cds;Parent=Msa0564850-mRNA-1 |
| chr4_1 | CDS | 65607906 | 65608054 | 65607906 | ID=Msa0564850-mRNA-1:cds;Parent=Msa0564850-mRNA-1 |
| chr4_1 | CDS | 65606951 | 65607003 | 65606951 | ID=Msa0564850-mRNA-1:cds;Parent=Msa0564850-mRNA-1 |
| chr4_1 | three_prime_UTR | 65606325 | 65606813 | 65606325 | ID=Msa0564850-mRNA-1:three_prime_utr;Parent=Msa0564850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
