Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497160 | ACJ85660.1 | 91.489 | 470 | 35 | 3 | 1 | 470 | 1 | 465 | 0.0 | 851 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497160 | sp|Q8LFV3|CDF3_ARATH | 47.106 | 501 | 176 | 21 | 1 | 468 | 2 | 446 | 5.21e-109 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497160 | B7FLM6 | 91.489 | 470 | 35 | 3 | 1 | 470 | 1 | 465 | 0.0 | 851 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0497160 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026280 | Msa0497160 | 0.824557 | 7.568885e-54 | -8.615850e-47 |
| Msa0074140 | Msa0497160 | 0.857522 | 1.541088e-62 | -8.615850e-47 |
| Msa0074180 | Msa0497160 | 0.853434 | 2.395728e-61 | -8.615850e-47 |
| Msa0116590 | Msa0497160 | 0.838627 | 2.569990e-57 | -8.615850e-47 |
| Msa0223780 | Msa0497160 | 0.845117 | 4.959150e-59 | -8.615850e-47 |
| Msa0396640 | Msa0497160 | 0.849944 | 2.336284e-60 | -8.615850e-47 |
| Msa0402510 | Msa0497160 | 0.890360 | 1.057142e-73 | -8.615850e-47 |
| Msa0415950 | Msa0497160 | 0.834964 | 2.210702e-56 | -8.615850e-47 |
| Msa0444170 | Msa0497160 | 0.855174 | 7.529529e-62 | -8.615850e-47 |
| Msa0448980 | Msa0497160 | 0.832821 | 7.594453e-56 | -8.615850e-47 |
| Msa0480250 | Msa0497160 | 0.827388 | 1.608317e-54 | -8.615850e-47 |
| Msa0264960 | Msa0497160 | 0.820911 | 5.341874e-53 | -8.615850e-47 |
| Msa0303010 | Msa0497160 | 0.820512 | 6.595453e-53 | -8.615850e-47 |
| Msa0350070 | Msa0497160 | 0.854695 | 1.037217e-61 | -8.615850e-47 |
| Msa0491730 | Msa0497160 | 0.864981 | 8.221535e-65 | -8.615850e-47 |
| Msa0497160 | Msa0508080 | 0.824788 | 6.676010e-54 | -8.615850e-47 |
| Msa0497160 | Msa0689940 | 0.833277 | 5.850998e-56 | -8.615850e-47 |
| Msa0497160 | Msa0725790 | 0.801314 | 9.547302e-49 | -8.615850e-47 |
| Msa0497160 | Msa0758300 | 0.843221 | 1.600859e-58 | -8.615850e-47 |
| Msa0497160 | Msa0792480 | 0.882144 | 1.332547e-70 | -8.615850e-47 |
| Msa0497160 | Msa0837930 | 0.834979 | 2.190601e-56 | -8.615850e-47 |
| Msa0497160 | Msa1009970 | 0.846758 | 1.775699e-59 | -8.615850e-47 |
| Msa0497160 | Msa1009990 | 0.800018 | 1.754612e-48 | -8.615850e-47 |
| Msa0497160 | Msa1051480 | 0.802488 | 5.477419e-49 | -8.615850e-47 |
| Msa0497160 | Msa1097710 | 0.830913 | 2.246440e-55 | -8.615850e-47 |
| Msa0497160 | Msa1130820 | 0.854748 | 1.001244e-61 | -8.615850e-47 |
| Msa0497160 | Msa1139800 | 0.808111 | 3.636864e-50 | -8.615850e-47 |
| Msa0497160 | Msa1186960 | 0.843073 | 1.752741e-58 | -8.615850e-47 |
| Msa0497160 | Msa1241140 | 0.817584 | 3.056480e-52 | -8.615850e-47 |
| Msa0497160 | Msa1406670 | 0.852024 | 6.053786e-61 | -8.615850e-47 |
| Msa0497160 | Msa1448870 | 0.852298 | 5.059868e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497160 | MtrunA17_Chr3g0092111 | 89.362 | 470 | 45 | 3 | 1 | 470 | 1 | 465 | 0.0 | 844 |
| Msa0497160 | MtrunA17_Chr4g0042481 | 42.169 | 498 | 223 | 20 | 1 | 468 | 1 | 463 | 1.36e-103 | 317 |
| Msa0497160 | MtrunA17_Chr7g0217581 | 41.954 | 522 | 215 | 16 | 1 | 470 | 98 | 583 | 1.65e-100 | 312 |
| Msa0497160 | MtrunA17_Chr6g0453321 | 41.731 | 520 | 228 | 19 | 1 | 470 | 1 | 495 | 1.37e-98 | 305 |
| Msa0497160 | MtrunA17_Chr5g0417561 | 39.459 | 370 | 114 | 14 | 111 | 468 | 90 | 361 | 1.71e-60 | 202 |
| Msa0497160 | MtrunA17_Chr8g0355261 | 34.082 | 490 | 236 | 18 | 5 | 469 | 11 | 438 | 3.25e-59 | 201 |
| Msa0497160 | MtrunA17_Chr5g0417551 | 32.636 | 478 | 199 | 15 | 4 | 468 | 2 | 369 | 7.65e-58 | 195 |
| Msa0497160 | MtrunA17_Chr7g0254161 | 34.545 | 385 | 189 | 14 | 71 | 424 | 38 | 390 | 8.56e-51 | 178 |
| Msa0497160 | MtrunA17_Chr5g0417571 | 39.706 | 204 | 112 | 5 | 9 | 204 | 7 | 207 | 8.84e-39 | 143 |
| Msa0497160 | MtrunA17_Chr6g0460721 | 36.177 | 293 | 136 | 11 | 109 | 361 | 48 | 329 | 4.66e-38 | 141 |
| Msa0497160 | MtrunA17_Chr6g0460731 | 36.538 | 260 | 111 | 9 | 107 | 344 | 53 | 280 | 8.09e-38 | 141 |
| Msa0497160 | MtrunA17_Chr5g0417601 | 45.890 | 146 | 75 | 2 | 62 | 205 | 62 | 205 | 2.40e-34 | 132 |
| Msa0497160 | MtrunA17_Chr5g0417601 | 41.848 | 184 | 69 | 9 | 289 | 468 | 230 | 379 | 2.46e-24 | 104 |
| Msa0497160 | MtrunA17_Chr2g0283811 | 78.333 | 60 | 13 | 0 | 134 | 193 | 41 | 100 | 6.20e-31 | 117 |
| Msa0497160 | MtrunA17_Chr8g0374111 | 61.644 | 73 | 28 | 0 | 140 | 212 | 29 | 101 | 8.14e-28 | 110 |
| Msa0497160 | MtrunA17_Chr3g0127201 | 61.333 | 75 | 29 | 0 | 119 | 193 | 6 | 80 | 4.97e-27 | 110 |
| Msa0497160 | MtrunA17_Chr2g0326001 | 72.881 | 59 | 16 | 0 | 135 | 193 | 35 | 93 | 4.75e-26 | 107 |
| Msa0497160 | MtrunA17_Chr8g0346551 | 69.492 | 59 | 18 | 0 | 135 | 193 | 19 | 77 | 6.18e-26 | 106 |
| Msa0497160 | MtrunA17_Chr1g0188851 | 72.222 | 54 | 15 | 0 | 142 | 195 | 45 | 98 | 2.26e-24 | 102 |
| Msa0497160 | MtrunA17_Chr8g0374251 | 67.797 | 59 | 19 | 0 | 140 | 198 | 68 | 126 | 2.92e-24 | 103 |
| Msa0497160 | MtrunA17_Chr4g0047001 | 76.923 | 52 | 12 | 0 | 142 | 193 | 57 | 108 | 3.74e-24 | 103 |
| Msa0497160 | MtrunA17_Chr4g0010151 | 59.091 | 66 | 27 | 0 | 128 | 193 | 70 | 135 | 5.77e-24 | 102 |
| Msa0497160 | MtrunA17_Chr1g0177251 | 66.129 | 62 | 20 | 1 | 142 | 202 | 14 | 75 | 5.78e-24 | 101 |
| Msa0497160 | MtrunA17_Chr4g0030051 | 67.692 | 65 | 20 | 1 | 129 | 192 | 29 | 93 | 6.56e-24 | 101 |
| Msa0497160 | MtrunA17_Chr3g0126201 | 73.077 | 52 | 14 | 0 | 142 | 193 | 53 | 104 | 8.12e-24 | 102 |
| Msa0497160 | MtrunA17_Chr3g0117601 | 66.129 | 62 | 20 | 1 | 130 | 190 | 50 | 111 | 1.15e-23 | 101 |
| Msa0497160 | MtrunA17_Chr2g0328021 | 70.370 | 54 | 16 | 0 | 140 | 193 | 62 | 115 | 1.84e-23 | 100 |
| Msa0497160 | MtrunA17_Chr4g0031411 | 59.722 | 72 | 28 | 1 | 128 | 198 | 63 | 134 | 2.82e-23 | 100 |
| Msa0497160 | MtrunA17_Chr8g0367161 | 51.807 | 83 | 34 | 1 | 111 | 193 | 9 | 85 | 4.73e-23 | 99.8 |
| Msa0497160 | MtrunA17_Chr2g0308011 | 75.510 | 49 | 12 | 0 | 140 | 188 | 37 | 85 | 5.21e-23 | 97.1 |
| Msa0497160 | MtrunA17_Chr8g0341671 | 64.516 | 62 | 22 | 0 | 140 | 201 | 20 | 81 | 6.65e-23 | 96.7 |
| Msa0497160 | MtrunA17_Chr2g0282511 | 75.510 | 49 | 12 | 0 | 140 | 188 | 45 | 93 | 1.14e-22 | 98.2 |
| Msa0497160 | MtrunA17_Chr2g0282051 | 75.000 | 52 | 12 | 1 | 142 | 193 | 48 | 98 | 2.46e-22 | 96.7 |
| Msa0497160 | MtrunA17_Chr2g0282441 | 72.000 | 50 | 14 | 0 | 142 | 191 | 27 | 76 | 2.60e-22 | 97.8 |
| Msa0497160 | MtrunA17_Chr4g0047761 | 68.519 | 54 | 17 | 0 | 140 | 193 | 72 | 125 | 2.75e-22 | 97.4 |
| Msa0497160 | MtrunA17_Chr4g0061761 | 67.925 | 53 | 17 | 0 | 138 | 190 | 38 | 90 | 3.43e-22 | 97.1 |
| Msa0497160 | MtrunA17_Chr7g0237921 | 57.576 | 66 | 28 | 0 | 128 | 193 | 64 | 129 | 3.71e-22 | 97.4 |
| Msa0497160 | MtrunA17_Chr7g0223311 | 72.549 | 51 | 14 | 0 | 142 | 192 | 79 | 129 | 3.94e-22 | 97.8 |
| Msa0497160 | MtrunA17_Chr5g0411951 | 63.636 | 55 | 20 | 0 | 136 | 190 | 39 | 93 | 1.04e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497160 | AT3G47500.1 | 47.106 | 501 | 176 | 21 | 1 | 468 | 2 | 446 | 5.30e-110 | 333 |
| Msa0497160 | AT5G39660.3 | 40.198 | 505 | 212 | 22 | 6 | 470 | 3 | 457 | 1.07e-83 | 265 |
| Msa0497160 | AT5G39660.1 | 40.198 | 505 | 212 | 22 | 6 | 470 | 3 | 457 | 1.07e-83 | 265 |
| Msa0497160 | AT5G39660.2 | 40.198 | 505 | 212 | 22 | 6 | 470 | 3 | 457 | 1.07e-83 | 265 |
| Msa0497160 | AT5G62430.1 | 44.180 | 378 | 112 | 13 | 97 | 468 | 12 | 296 | 3.45e-82 | 256 |
| Msa0497160 | AT1G69570.1 | 33.402 | 488 | 214 | 20 | 1 | 469 | 1 | 396 | 7.73e-53 | 183 |
| Msa0497160 | AT1G26790.1 | 33.065 | 372 | 158 | 15 | 109 | 468 | 78 | 370 | 4.79e-43 | 156 |
| Msa0497160 | AT2G34140.1 | 56.989 | 93 | 40 | 0 | 101 | 193 | 19 | 111 | 3.93e-33 | 124 |
| Msa0497160 | AT1G29160.1 | 80.000 | 60 | 12 | 0 | 134 | 193 | 56 | 115 | 2.45e-32 | 121 |
| Msa0497160 | AT5G60200.1 | 50.000 | 110 | 50 | 2 | 136 | 240 | 51 | 160 | 7.89e-28 | 112 |
| Msa0497160 | AT3G61850.2 | 65.079 | 63 | 22 | 0 | 135 | 197 | 57 | 119 | 3.05e-25 | 105 |
| Msa0497160 | AT3G61850.3 | 65.079 | 63 | 22 | 0 | 135 | 197 | 57 | 119 | 3.05e-25 | 105 |
| Msa0497160 | AT3G50410.1 | 71.930 | 57 | 16 | 0 | 140 | 196 | 30 | 86 | 3.11e-25 | 104 |
| Msa0497160 | AT3G61850.1 | 65.079 | 63 | 22 | 0 | 135 | 197 | 69 | 131 | 3.11e-25 | 105 |
| Msa0497160 | AT2G28510.1 | 71.186 | 59 | 17 | 0 | 142 | 200 | 50 | 108 | 3.53e-25 | 105 |
| Msa0497160 | AT4G24060.1 | 62.121 | 66 | 25 | 0 | 128 | 193 | 41 | 106 | 3.83e-25 | 106 |
| Msa0497160 | AT3G61850.5 | 65.079 | 63 | 22 | 0 | 135 | 197 | 57 | 119 | 4.15e-25 | 105 |
| Msa0497160 | AT3G61850.4 | 65.079 | 63 | 22 | 0 | 135 | 197 | 69 | 131 | 4.80e-25 | 105 |
| Msa0497160 | AT3G45610.1 | 61.905 | 63 | 24 | 0 | 136 | 198 | 36 | 98 | 5.18e-25 | 103 |
| Msa0497160 | AT2G28810.2 | 65.574 | 61 | 21 | 0 | 131 | 191 | 68 | 128 | 2.07e-24 | 103 |
| Msa0497160 | AT2G28810.1 | 65.574 | 61 | 21 | 0 | 131 | 191 | 85 | 145 | 2.92e-24 | 103 |
| Msa0497160 | AT1G51700.1 | 57.333 | 75 | 28 | 1 | 140 | 210 | 33 | 107 | 3.13e-24 | 100 |
| Msa0497160 | AT1G28310.1 | 74.074 | 54 | 14 | 0 | 140 | 193 | 27 | 80 | 3.72e-24 | 102 |
| Msa0497160 | AT1G28310.2 | 74.074 | 54 | 14 | 0 | 140 | 193 | 51 | 104 | 5.74e-24 | 102 |
| Msa0497160 | AT2G37590.1 | 38.519 | 135 | 49 | 3 | 128 | 229 | 77 | 210 | 6.03e-24 | 102 |
| Msa0497160 | AT5G60850.1 | 62.121 | 66 | 25 | 0 | 128 | 193 | 39 | 104 | 1.02e-23 | 101 |
| Msa0497160 | AT4G00940.1 | 67.797 | 59 | 19 | 0 | 135 | 193 | 63 | 121 | 1.05e-23 | 101 |
| Msa0497160 | AT4G00940.3 | 67.797 | 59 | 19 | 0 | 135 | 193 | 63 | 121 | 1.05e-23 | 101 |
| Msa0497160 | AT4G00940.2 | 67.797 | 59 | 19 | 0 | 135 | 193 | 63 | 121 | 1.05e-23 | 101 |
| Msa0497160 | AT1G21340.1 | 62.295 | 61 | 22 | 1 | 142 | 201 | 40 | 100 | 1.07e-23 | 100 |
| Msa0497160 | AT3G21270.1 | 73.585 | 53 | 14 | 0 | 140 | 192 | 29 | 81 | 1.16e-23 | 99.0 |
| Msa0497160 | AT3G55370.1 | 55.714 | 70 | 31 | 0 | 136 | 205 | 72 | 141 | 1.21e-23 | 101 |
| Msa0497160 | AT3G55370.2 | 55.714 | 70 | 31 | 0 | 136 | 205 | 72 | 141 | 1.39e-23 | 102 |
| Msa0497160 | AT1G47655.1 | 77.551 | 49 | 11 | 0 | 140 | 188 | 29 | 77 | 1.59e-23 | 98.6 |
| Msa0497160 | AT1G07640.1 | 71.698 | 53 | 15 | 0 | 140 | 192 | 21 | 73 | 1.82e-23 | 100 |
| Msa0497160 | AT3G55370.3 | 55.714 | 70 | 31 | 0 | 136 | 205 | 117 | 186 | 1.95e-23 | 102 |
| Msa0497160 | AT1G07640.2 | 71.698 | 53 | 15 | 0 | 140 | 192 | 77 | 129 | 1.99e-23 | 101 |
| Msa0497160 | AT3G52440.1 | 68.421 | 57 | 18 | 0 | 142 | 198 | 27 | 83 | 2.19e-23 | 99.4 |
| Msa0497160 | AT5G66940.1 | 48.315 | 89 | 43 | 1 | 114 | 199 | 3 | 91 | 2.43e-23 | 98.6 |
| Msa0497160 | AT3G52440.2 | 68.421 | 57 | 18 | 0 | 142 | 198 | 46 | 102 | 2.51e-23 | 99.8 |
| Msa0497160 | AT1G07640.3 | 71.698 | 53 | 15 | 0 | 140 | 192 | 85 | 137 | 2.56e-23 | 100 |
| Msa0497160 | AT1G64620.1 | 63.934 | 61 | 22 | 0 | 128 | 188 | 37 | 97 | 3.73e-23 | 100 |
| Msa0497160 | AT2G46590.1 | 69.811 | 53 | 16 | 0 | 135 | 187 | 63 | 115 | 5.01e-23 | 100 |
| Msa0497160 | AT2G46590.2 | 69.811 | 53 | 16 | 0 | 135 | 187 | 75 | 127 | 5.63e-23 | 100 |
| Msa0497160 | AT5G65590.1 | 70.370 | 54 | 16 | 0 | 140 | 193 | 41 | 94 | 5.96e-23 | 99.8 |
| Msa0497160 | AT5G02460.1 | 59.091 | 66 | 27 | 0 | 128 | 193 | 83 | 148 | 1.64e-22 | 99.8 |
| Msa0497160 | AT5G62940.1 | 73.469 | 49 | 13 | 0 | 142 | 190 | 75 | 123 | 1.58e-21 | 96.3 |
| Msa0497160 | AT4G21050.1 | 57.971 | 69 | 29 | 0 | 125 | 193 | 9 | 77 | 2.11e-21 | 92.8 |
| Msa0497160 | AT4G38000.1 | 64.286 | 56 | 19 | 1 | 139 | 194 | 40 | 94 | 6.43e-21 | 92.0 |
| Msa0497160 | AT4G21040.1 | 63.462 | 52 | 19 | 0 | 142 | 193 | 27 | 78 | 1.49e-18 | 85.1 |
| Msa0497160 | AT4G21080.1 | 61.538 | 52 | 20 | 0 | 142 | 193 | 27 | 78 | 9.25e-18 | 83.2 |
| Msa0497160 | AT4G21030.1 | 59.091 | 44 | 18 | 0 | 142 | 185 | 23 | 66 | 1.15e-11 | 64.3 |
Find 120 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAATGTTCCTTGGTTTC+CGG | 0.171508 | 3_4:-29409588 | Msa0497160:CDS |
| GACCCTGAAATTAAGCTCTT+TGG | 0.245711 | 3_4:-29411844 | Msa0497160:CDS |
| ACACATCCATTTCTTTGTTT+TGG | 0.252620 | 3_4:+29409437 | None:intergenic |
| GAATAGGGGTGGTATGATTA+AGG | 0.274373 | 3_4:-29409324 | Msa0497160:CDS |
| TCAGCATCTTTATCTGCTTC+AGG | 0.276517 | 3_4:+29410415 | None:intergenic |
| GCAAGGCGTGTCAAAGATAT+TGG | 0.279470 | 3_4:-29410108 | Msa0497160:CDS |
| TGTCACAGTTTCAAAGTCTA+TGG | 0.284931 | 3_4:-29409789 | Msa0497160:CDS |
| ACAAAGAAATGGATGTGTTT+TGG | 0.286668 | 3_4:-29409432 | Msa0497160:CDS |
| TTCCCAAAGAGCTTAATTTC+AGG | 0.291841 | 3_4:+29411841 | None:intergenic |
| AAGCTGCAAAGAGTTCAATT+TGG | 0.294104 | 3_4:-29409376 | Msa0497160:CDS |
| GAACTCTTTGCAGCTTCATT+TGG | 0.306321 | 3_4:+29409383 | None:intergenic |
| TCTCAATCCTGCGGAGAAAA+AGG | 0.308287 | 3_4:-29409861 | Msa0497160:CDS |
| CTCACCAATGTGCATTTGAT+TGG | 0.310026 | 3_4:-29409117 | Msa0497160:three_prime_UTR |
| TTCCCAAGCGTTGGAGATTT+CGG | 0.313791 | 3_4:+29409533 | None:intergenic |
| GCAAGAATTATTTCTCCTAA+TGG | 0.319242 | 3_4:-29409974 | Msa0497160:CDS |
| TAAGAATGAAGGTTTGAATA+GGG | 0.329266 | 3_4:-29409339 | Msa0497160:CDS |
| ACCCTGAAATTAAGCTCTTT+GGG | 0.333537 | 3_4:-29411843 | Msa0497160:CDS |
| TTCTCAAACACAATACAAAA+AGG | 0.333946 | 3_4:+29409182 | None:intergenic |
| GCGCCGGAATTCCATGTATA+AGG | 0.337826 | 3_4:+29409674 | None:intergenic |
| TTTGTTTCGTTGTGTATGTT+TGG | 0.346763 | 3_4:-29411895 | Msa0497160:five_prime_UTR |
| CGCGAGACAGTTATTAGTTA+AGG | 0.358255 | 3_4:+29411942 | None:intergenic |
| AATGGTAGAGTTCTCAGCTT+TGG | 0.361480 | 3_4:-29409923 | Msa0497160:CDS |
| CTCAACGACACTCGAAATAA+TGG | 0.366706 | 3_4:-29409836 | Msa0497160:CDS |
| AGCTGCAAAGAGTTCAATTT+GGG | 0.368742 | 3_4:-29409375 | Msa0497160:CDS |
| TTAAGAATGAAGGTTTGAAT+AGG | 0.377391 | 3_4:-29409340 | Msa0497160:CDS |
| TTATTACCACAGCAAAATAA+TGG | 0.378604 | 3_4:-29409737 | Msa0497160:CDS |
| GTGATTCTTCTGTTTGCAAA+TGG | 0.382048 | 3_4:+29409459 | None:intergenic |
| TTCTTGATCTCTGCGGCATC+TGG | 0.383443 | 3_4:+29410367 | None:intergenic |
| TGGCCTTATACATGGAATTC+CGG | 0.391224 | 3_4:-29409677 | Msa0497160:CDS |
| TGAAGATGATTAGTTCCATT+AGG | 0.393074 | 3_4:+29409959 | None:intergenic |
| CTAGACCTTGGAGTTGTTGC+GGG | 0.395105 | 3_4:+29409557 | None:intergenic |
| ATGGTAGAGTTCTCAGCTTT+GGG | 0.396367 | 3_4:-29409922 | Msa0497160:CDS |
| AACCAAGGAACATTCCAAAA+AGG | 0.400329 | 3_4:+29409593 | None:intergenic |
| TCTTGAGCGTTGTTGTTGTT+TGG | 0.409763 | 3_4:+29410241 | None:intergenic |
| GCGCTGTTGCAGCGTGGACA+CGG | 0.414640 | 3_4:+29410187 | None:intergenic |
| AGAAATGTTCCGGTCGGTGC+AGG | 0.415448 | 3_4:-29410067 | Msa0497160:CDS |
| TCAAACCTCTCCAATGTTGA+TGG | 0.423970 | 3_4:-29409267 | Msa0497160:CDS |
| GAATCACCAAAACAAAGAAA+TGG | 0.432133 | 3_4:-29409443 | Msa0497160:CDS |
| TCCCAAAGAGCTTAATTTCA+GGG | 0.435590 | 3_4:+29411842 | None:intergenic |
| GCCACAAACTTTGTGTCCCC+CGG | 0.437597 | 3_4:-29409642 | Msa0497160:CDS |
| TTCTTATTTAAGAGTTCTCA+TGG | 0.441058 | 3_4:+29409210 | None:intergenic |
| CATGCATGACTAGTGCTCCT+TGG | 0.446252 | 3_4:-29409697 | Msa0497160:CDS |
| TGTTTCGCCGGTGGCGGCGA+TGG | 0.453817 | 3_4:-29411764 | Msa0497160:CDS |
| ATCTCTGCGGCATCTGGTGG+AGG | 0.457276 | 3_4:+29410373 | None:intergenic |
| CGGAACCATGAGAAATGTTC+CGG | 0.463308 | 3_4:-29410077 | Msa0497160:CDS |
| ACACTTGGAATTAAGAATGA+AGG | 0.464706 | 3_4:-29409350 | Msa0497160:CDS |
| TAGAGTTCTCAGCTTTGGGT+TGG | 0.472520 | 3_4:-29409918 | Msa0497160:CDS |
| TGTATTGTGTTTGAGAATTG+AGG | 0.475993 | 3_4:-29409176 | Msa0497160:three_prime_UTR |
| TAAAATGACATGGGAAATCC+CGG | 0.477882 | 3_4:+29409623 | None:intergenic |
| AGTGATCTAGCTAAAGCTGC+AGG | 0.482293 | 3_4:+29409239 | None:intergenic |
| GTCCGAAATCTCCAACGCTT+GGG | 0.485579 | 3_4:-29409535 | Msa0497160:CDS |
| AGTCCGAAATCTCCAACGCT+TGG | 0.486148 | 3_4:-29409536 | Msa0497160:CDS |
| AACAATTCAGCAGCAACATT+GGG | 0.489579 | 3_4:-29410337 | Msa0497160:CDS |
| CTCGAGTGTTTCCCAAGCGT+TGG | 0.495617 | 3_4:+29409524 | None:intergenic |
| GTGCTCCTTGGCCTTATACA+TGG | 0.498856 | 3_4:-29409685 | Msa0497160:CDS |
| TGGTAGTCTCAGCACAAGAA+AGG | 0.501369 | 3_4:-29409078 | Msa0497160:three_prime_UTR |
| GGAAAATGTTTCGCCGGTGG+CGG | 0.507124 | 3_4:-29411770 | Msa0497160:CDS |
| TTTCTTCTCCCTGCACCGAC+CGG | 0.507717 | 3_4:+29410058 | None:intergenic |
| AGTTCAATTTGGGAAACACT+TGG | 0.509045 | 3_4:-29409365 | Msa0497160:CDS |
| TTGATCTCTGCGGCATCTGG+TGG | 0.510926 | 3_4:+29410370 | None:intergenic |
| GGTAGTCTCAGCACAAGAAA+GGG | 0.511396 | 3_4:-29409077 | Msa0497160:three_prime_UTR |
| TTGATTGGACTTGTTGACCT+TGG | 0.511589 | 3_4:-29409102 | Msa0497160:three_prime_UTR |
| GGTGAAGCTCTTATCACTGC+TGG | 0.511617 | 3_4:-29411796 | Msa0497160:CDS |
| CGCTGTTGCAGCGTGGACAC+GGG | 0.514091 | 3_4:+29410188 | None:intergenic |
| TGTCAAAGATATTGGACTGC+AGG | 0.515747 | 3_4:-29410100 | Msa0497160:CDS |
| GGACACGGGAGTAATTTGTC+TGG | 0.517983 | 3_4:+29410202 | None:intergenic |
| CAACAATTCAGCAGCAACAT+TGG | 0.525068 | 3_4:-29410338 | Msa0497160:CDS |
| GGACACAAAGTTTGTGGCGA+GGG | 0.530054 | 3_4:+29409647 | None:intergenic |
| CTTCAAAATTTGAAAACCAA+TGG | 0.530626 | 3_4:-29409941 | Msa0497160:CDS |
| TCTACATCCATCGCCGCCAC+CGG | 0.533306 | 3_4:+29411757 | None:intergenic |
| GAAGAATCAATGCATGCTCT+AGG | 0.534082 | 3_4:-29408883 | Msa0497160:three_prime_UTR |
| ACTAGACCTTGGAGTTGTTG+CGG | 0.535379 | 3_4:+29409556 | None:intergenic |
| GAAGTTTCTTCATCTATGGA+AGG | 0.537934 | 3_4:+29410295 | None:intergenic |
| AAGAATGAAGGTTTGAATAG+GGG | 0.550009 | 3_4:-29409338 | Msa0497160:CDS |
| GGAGATTTCGGACTAGACCT+TGG | 0.555458 | 3_4:+29409545 | None:intergenic |
| TTGGACTTGTTGACCTTGGT+TGG | 0.558722 | 3_4:-29409098 | Msa0497160:three_prime_UTR |
| ATGCACATTGGTGAGAAAGA+TGG | 0.558817 | 3_4:+29409125 | None:intergenic |
| TTGTGGCGAGGGAATTGCGC+CGG | 0.571745 | 3_4:+29409658 | None:intergenic |
| CAACGCTTGGGAAACACTCG+AGG | 0.576028 | 3_4:-29409523 | Msa0497160:CDS |
| GAATTCCATGTATAAGGCCA+AGG | 0.578932 | 3_4:+29409680 | None:intergenic |
| TCAAAGTCTATGGAGGAAAG+TGG | 0.579037 | 3_4:-29409779 | Msa0497160:CDS |
| AAAATGACATGGGAAATCCC+GGG | 0.581434 | 3_4:+29409624 | None:intergenic |
| GTTGTTGCGGGAGTATGAGC+CGG | 0.587005 | 3_4:+29409569 | None:intergenic |
| GCAGGGTTAGCCATCAACAT+TGG | 0.587131 | 3_4:+29409257 | None:intergenic |
| AAAGCTGAGAACTCTACCAT+TGG | 0.588853 | 3_4:+29409925 | None:intergenic |
| GACAATGAATCATAGATATG+TGG | 0.589586 | 3_4:+29409890 | None:intergenic |
| CTAGTCATGCATGGAACTTG+AGG | 0.591487 | 3_4:+29409707 | None:intergenic |
| AGGAGCAGGGTAAAATGACA+TGG | 0.595195 | 3_4:+29409613 | None:intergenic |
| ATAAGAGCTTCACCTTCCCC+AGG | 0.600696 | 3_4:+29411805 | None:intergenic |
| TGAAGAAGAAGAAATCGAGA+AGG | 0.603186 | 3_4:-29411692 | Msa0497160:intron |
| ACCGACCGGAACATTTCTCA+TGG | 0.607090 | 3_4:+29410072 | None:intergenic |
| CAAAGATATTGGACTGCAGG+CGG | 0.608252 | 3_4:-29410097 | Msa0497160:CDS |
| AATGAAGGTTTGAATAGGGG+TGG | 0.610382 | 3_4:-29409335 | Msa0497160:CDS |
| GAAATGTTCCGGTCGGTGCA+GGG | 0.612559 | 3_4:-29410066 | Msa0497160:CDS |
| GGAGTATGAGCCGGAAACCA+AGG | 0.616307 | 3_4:+29409578 | None:intergenic |
| CACAGTTTCAAAGTCTATGG+AGG | 0.616952 | 3_4:-29409786 | Msa0497160:CDS |
| ATACTCCCGCAACAACTCCA+AGG | 0.620702 | 3_4:-29409562 | Msa0497160:CDS |
| TGAGGAAAATGTTTCGCCGG+TGG | 0.625717 | 3_4:-29411773 | Msa0497160:CDS |
| TGCATCAAGAGCCTCAGAGA+TGG | 0.626336 | 3_4:+29409997 | None:intergenic |
| GTTAGCCATCAACATTGGAG+AGG | 0.627108 | 3_4:+29409262 | None:intergenic |
| TGGTGAGGAAAATGTTTCGC+CGG | 0.632349 | 3_4:-29411776 | Msa0497160:CDS |
| AGCTCTTATCACTGCTGGTG+AGG | 0.635032 | 3_4:-29411791 | Msa0497160:CDS |
| GTGATCTAGCTAAAGCTGCA+GGG | 0.636623 | 3_4:+29409240 | None:intergenic |
| ACATTGGAGAGGTTTGAACA+TGG | 0.639471 | 3_4:+29409273 | None:intergenic |
| GGGACACAAAGTTTGTGGCG+AGG | 0.645797 | 3_4:+29409646 | None:intergenic |
| CAAGGAGCACTAGTCATGCA+TGG | 0.646293 | 3_4:+29409698 | None:intergenic |
| GTCAAATGATCTCAATCCTG+CGG | 0.646844 | 3_4:-29409870 | Msa0497160:CDS |
| ACCATGAGAAATGTTCCGGT+CGG | 0.654901 | 3_4:-29410073 | Msa0497160:CDS |
| GAGCCTCAGAGATGGTGATG+TGG | 0.657067 | 3_4:+29410005 | None:intergenic |
| GTAGTCTCAGCACAAGAAAG+GGG | 0.675006 | 3_4:-29409076 | Msa0497160:three_prime_UTR |
| AAATGACATGGGAAATCCCG+GGG | 0.675311 | 3_4:+29409625 | None:intergenic |
| AACGCTTGGGAAACACTCGA+GGG | 0.675892 | 3_4:-29409522 | Msa0497160:CDS |
| GTTGTCGTTCTTGATCTCTG+CGG | 0.679992 | 3_4:+29410360 | None:intergenic |
| GGAGCAGGGTAAAATGACAT+GGG | 0.680900 | 3_4:+29409614 | None:intergenic |
| AAGTCCAATCAAATGCACAT+TGG | 0.697342 | 3_4:+29409113 | None:intergenic |
| TCGCCACATCACCATCTCTG+AGG | 0.699550 | 3_4:-29410008 | Msa0497160:CDS |
| GTGTCCGCGCTGTTGCAGCG+TGG | 0.703298 | 3_4:+29410181 | None:intergenic |
| TGTGCTGAGACTACCAACCA+AGG | 0.710792 | 3_4:+29409085 | None:intergenic |
| GTGTCCACGCTGCAACAGCG+CGG | 0.758797 | 3_4:-29410185 | Msa0497160:CDS |
| AATGACATGGGAAATCCCGG+GGG | 0.785488 | 3_4:+29409626 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGAAAAAATTGTAAAAA+AGG | + | chr3_4:29409568-29409587 | None:intergenic | 10.0% |
| !!! | TTTTTACAATTTTTTCTATA+TGG | - | chr3_4:29409568-29409587 | Msa0497160:CDS | 10.0% |
| !! | AATTAAATAAATTTGAGCAT+AGG | - | chr3_4:29409520-29409539 | Msa0497160:CDS | 15.0% |
| !! | ATTAAATAAATTTGAGCATA+GGG | - | chr3_4:29409521-29409540 | Msa0497160:CDS | 15.0% |
| !!! | TTTTAATTTTTACATGAAGT+TGG | - | chr3_4:29409747-29409766 | Msa0497160:CDS | 15.0% |
| !!! | TTGATTTATTTTTGATGTTT+TGG | - | chr3_4:29409791-29409810 | Msa0497160:CDS | 15.0% |
| !! | AGAAAAAATGATTGAAACTA+AGG | - | chr3_4:29409001-29409020 | Msa0497160:three_prime_UTR | 20.0% |
| !!! | ACTAAAGATTTTTATGAGTA+AGG | - | chr3_4:29409251-29409270 | Msa0497160:CDS | 20.0% |
| !! | TGTTTGTATGATCTTATTAT+AGG | - | chr3_4:29409457-29409476 | Msa0497160:CDS | 20.0% |
| !! | AAAAATTGAAAATTCCCTAA+GGG | + | chr3_4:29409624-29409643 | None:intergenic | 20.0% |
| !! | TAAAAATTGAAAATTCCCTA+AGG | + | chr3_4:29409625-29409644 | None:intergenic | 20.0% |
| !! | AATATATATTGCATCAATTG+AGG | + | chr3_4:29410034-29410053 | None:intergenic | 20.0% |
| !! | ATATTGTCTCAAATAATTAG+CGG | - | chr3_4:29410349-29410368 | Msa0497160:CDS | 20.0% |
| !! | AAACATTGTGTCAAATTAAT+AGG | - | chr3_4:29410427-29410446 | Msa0497160:intron | 20.0% |
| !!! | TGAAAAAACTTTCTAGTTAT+GGG | - | chr3_4:29411912-29411931 | Msa0497160:five_prime_UTR | 20.0% |
| !!! | TGTTTTGAAGAAAGATGTTT+CGG | + | chr3_4:29408897-29408916 | None:intergenic | 25.0% |
| ! | ACAACGAAACAAAAAACAAA+GGG | + | chr3_4:29408965-29408984 | None:intergenic | 25.0% |
| ! | AAAATTGAAAATTCCCTAAG+GGG | + | chr3_4:29409623-29409642 | None:intergenic | 25.0% |
| !!! | ATTTTTACATGAAGTTGGTA+AGG | - | chr3_4:29409752-29409771 | Msa0497160:CDS | 25.0% |
| ! | TTTAGTAACTCATATGAGTT+AGG | + | chr3_4:29410093-29410112 | None:intergenic | 25.0% |
| ! | TTCAGATTTGGAAAAATGTT+TGG | - | chr3_4:29410274-29410293 | Msa0497160:CDS | 25.0% |
| !!! | TTTTGAAGTTTCTTCATCTA+TGG | + | chr3_4:29410579-29410598 | None:intergenic | 25.0% |
| ! | CTTCAAAATTTGAAAACCAA+TGG | - | chr3_4:29410926-29410945 | Msa0497160:intron | 25.0% |
| ! | TTATTACCACAGCAAAATAA+TGG | - | chr3_4:29411130-29411149 | Msa0497160:intron | 25.0% |
| !! | TCATCAATTCTCAATGTTTT+AGG | + | chr3_4:29411463-29411482 | None:intergenic | 25.0% |
| ! | TTAAGAATGAAGGTTTGAAT+AGG | - | chr3_4:29411527-29411546 | Msa0497160:intron | 25.0% |
| ! | TAAGAATGAAGGTTTGAATA+GGG | - | chr3_4:29411528-29411547 | Msa0497160:intron | 25.0% |
| !! | TTCTTATTTAAGAGTTCTCA+TGG | + | chr3_4:29411660-29411679 | None:intergenic | 25.0% |
| ! | TTCTCAAACACAATACAAAA+AGG | + | chr3_4:29411688-29411707 | None:intergenic | 25.0% |
| !! | TTTTGTGTAACACTATGAAT+AGG | - | chr3_4:29411830-29411849 | Msa0497160:CDS | 25.0% |
| !!! | ATTTTATGTGTTTAGCTTGT+TGG | - | chr3_4:29411860-29411879 | Msa0497160:CDS | 25.0% |
| !!! | TTTTATGTGTTTAGCTTGTT+GGG | - | chr3_4:29411861-29411880 | Msa0497160:CDS | 25.0% |
| !!! | GTGAAAAAACTTTCTAGTTA+TGG | - | chr3_4:29411911-29411930 | Msa0497160:five_prime_UTR | 25.0% |
| CACAACGAAACAAAAAACAA+AGG | + | chr3_4:29408966-29408985 | None:intergenic | 30.0% | |
| TTTGTTTCGTTGTGTATGTT+TGG | - | chr3_4:29408972-29408991 | Msa0497160:three_prime_UTR | 30.0% | |
| ! | GGAAAAAGATTCTTTTTCCT+GGG | - | chr3_4:29409045-29409064 | Msa0497160:three_prime_UTR | 30.0% |
| ! | GAAAAAGATTCTTTTTCCTG+GGG | - | chr3_4:29409046-29409065 | Msa0497160:three_prime_UTR | 30.0% |
| ATCGTGCATATTTGATATCA+CGG | - | chr3_4:29409294-29409313 | Msa0497160:CDS | 30.0% | |
| ACACAACAAATAGATACTCA+TGG | + | chr3_4:29409373-29409392 | None:intergenic | 30.0% | |
| TAAATTTGAGCATAGGGTAA+TGG | - | chr3_4:29409527-29409546 | Msa0497160:CDS | 30.0% | |
| ! | CTTTTTCCAAAACTCTGTTT+CGG | + | chr3_4:29409709-29409728 | None:intergenic | 30.0% |
| !!! | GTTTGTTGTGTGGTTTTAAT+CGG | + | chr3_4:29409841-29409860 | None:intergenic | 30.0% |
| AAATTATGCACTTATGCTCT+TGG | - | chr3_4:29410234-29410253 | Msa0497160:CDS | 30.0% | |
| AACTATTGTATGTGTAACTG+TGG | + | chr3_4:29410315-29410334 | None:intergenic | 30.0% | |
| ! | TGAATCACTTTGTTCGTTTT+CGG | + | chr3_4:29410603-29410622 | None:intergenic | 30.0% |
| ! | GCAAGAATTATTTCTCCTAA+TGG | - | chr3_4:29410893-29410912 | Msa0497160:intron | 30.0% |
| ! | TGAAGATGATTAGTTCCATT+AGG | + | chr3_4:29410911-29410930 | None:intergenic | 30.0% |
| GACAATGAATCATAGATATG+TGG | + | chr3_4:29410980-29410999 | None:intergenic | 30.0% | |
| !! | ATGAAACCATTATTTTGCTG+TGG | + | chr3_4:29411139-29411158 | None:intergenic | 30.0% |
| GAATCACCAAAACAAAGAAA+TGG | - | chr3_4:29411424-29411443 | Msa0497160:intron | 30.0% | |
| !! | ACACATCCATTTCTTTGTTT+TGG | + | chr3_4:29411433-29411452 | None:intergenic | 30.0% |
| ! | ACAAAGAAATGGATGTGTTT+TGG | - | chr3_4:29411435-29411454 | Msa0497160:intron | 30.0% |
| ACACTTGGAATTAAGAATGA+AGG | - | chr3_4:29411517-29411536 | Msa0497160:intron | 30.0% | |
| AAGAATGAAGGTTTGAATAG+GGG | - | chr3_4:29411529-29411548 | Msa0497160:intron | 30.0% | |
| ! | GCTTTTCAATCAAAGAAAGA+TGG | - | chr3_4:29411565-29411584 | Msa0497160:intron | 30.0% |
| TGTATTGTGTTTGAGAATTG+AGG | - | chr3_4:29411691-29411710 | Msa0497160:intron | 30.0% | |
| !!! | AAGATGTTTCGGTTTTTTCG+AGG | + | chr3_4:29408886-29408905 | None:intergenic | 35.0% |
| ACCCTGAAATTAAGCTCTTT+GGG | - | chr3_4:29409024-29409043 | Msa0497160:three_prime_UTR | 35.0% | |
| TCCCAAAGAGCTTAATTTCA+GGG | + | chr3_4:29409028-29409047 | None:intergenic | 35.0% | |
| TTCCCAAAGAGCTTAATTTC+AGG | + | chr3_4:29409029-29409048 | None:intergenic | 35.0% | |
| ! | GGGAAAAAGATTCTTTTTCC+TGG | - | chr3_4:29409044-29409063 | Msa0497160:three_prime_UTR | 35.0% |
| TGAAGAAGAAGAAATCGAGA+AGG | - | chr3_4:29409175-29409194 | Msa0497160:three_prime_UTR | 35.0% | |
| !! | TGTTCTGAAATTTACCCCTT+AGG | - | chr3_4:29409606-29409625 | Msa0497160:CDS | 35.0% |
| !! | GTTCTGAAATTTACCCCTTA+GGG | - | chr3_4:29409607-29409626 | Msa0497160:CDS | 35.0% |
| ! | TTACTTCCGAAACAGAGTTT+TGG | - | chr3_4:29409700-29409719 | Msa0497160:CDS | 35.0% |
| !! | GACTGAAATTGTTTGTTGTG+TGG | + | chr3_4:29409851-29409870 | None:intergenic | 35.0% |
| TTCTACTGTATAGTGCTCAT+AGG | + | chr3_4:29409930-29409949 | None:intergenic | 35.0% | |
| ! | ACCTTTTCTTGATGTTCTTC+TGG | - | chr3_4:29410175-29410194 | Msa0497160:CDS | 35.0% |
| ACCAGAAGAACATCAAGAAA+AGG | + | chr3_4:29410179-29410198 | None:intergenic | 35.0% | |
| CAGGACTAATACTTCAGATT+TGG | - | chr3_4:29410262-29410281 | Msa0497160:CDS | 35.0% | |
| AACAATTCAGCAGCAACATT+GGG | - | chr3_4:29410530-29410549 | Msa0497160:intron | 35.0% | |
| !!! | TCATCTATGGAAGGTGTTTT+CGG | + | chr3_4:29410566-29410585 | None:intergenic | 35.0% |
| GAAGTTTCTTCATCTATGGA+AGG | + | chr3_4:29410575-29410594 | None:intergenic | 35.0% | |
| TGTCACAGTTTCAAAGTCTA+TGG | - | chr3_4:29411078-29411097 | Msa0497160:intron | 35.0% | |
| TAAAATGACATGGGAAATCC+CGG | + | chr3_4:29411247-29411266 | None:intergenic | 35.0% | |
| AACCAAGGAACATTCCAAAA+AGG | + | chr3_4:29411277-29411296 | None:intergenic | 35.0% | |
| GTGATTCTTCTGTTTGCAAA+TGG | + | chr3_4:29411411-29411430 | None:intergenic | 35.0% | |
| AAGCTGCAAAGAGTTCAATT+TGG | - | chr3_4:29411491-29411510 | Msa0497160:intron | 35.0% | |
| AGCTGCAAAGAGTTCAATTT+GGG | - | chr3_4:29411492-29411511 | Msa0497160:intron | 35.0% | |
| AGTTCAATTTGGGAAACACT+TGG | - | chr3_4:29411502-29411521 | Msa0497160:intron | 35.0% | |
| AAGTCCAATCAAATGCACAT+TGG | + | chr3_4:29411757-29411776 | None:intergenic | 35.0% | |
| CGCGAGACAGTTATTAGTTA+AGG | + | chr3_4:29408928-29408947 | None:intergenic | 40.0% | |
| GACCCTGAAATTAAGCTCTT+TGG | - | chr3_4:29409023-29409042 | Msa0497160:three_prime_UTR | 40.0% | |
| ! | AAGATTCTTTTTCCTGGGGA+AGG | - | chr3_4:29409050-29409069 | Msa0497160:three_prime_UTR | 40.0% |
| GTGCATATTTGATATCACGG+TGG | - | chr3_4:29409297-29409316 | Msa0497160:CDS | 40.0% | |
| !! | TTGAGCATAGGGTAATGGAT+TGG | - | chr3_4:29409532-29409551 | Msa0497160:CDS | 40.0% |
| GTCAAATATACTGAGACAGC+AGG | - | chr3_4:29409868-29409887 | Msa0497160:CDS | 40.0% | |
| ACTGTATAGTGCTCATAGGA+AGG | + | chr3_4:29409926-29409945 | None:intergenic | 40.0% | |
| ACTTATGCTCTTGGATATGC+AGG | - | chr3_4:29410243-29410262 | Msa0497160:CDS | 40.0% | |
| TCAGCATCTTTATCTGCTTC+AGG | + | chr3_4:29410455-29410474 | None:intergenic | 40.0% | |
| CAACAATTCAGCAGCAACAT+TGG | - | chr3_4:29410529-29410548 | Msa0497160:intron | 40.0% | |
| !!! | CATCTATGGAAGGTGTTTTC+GGG | + | chr3_4:29410565-29410584 | None:intergenic | 40.0% |
| ! | TCTTGAGCGTTGTTGTTGTT+TGG | + | chr3_4:29410629-29410648 | None:intergenic | 40.0% |
| TGTCAAAGATATTGGACTGC+AGG | - | chr3_4:29410767-29410786 | Msa0497160:intron | 40.0% | |
| AAAGCTGAGAACTCTACCAT+TGG | + | chr3_4:29410945-29410964 | None:intergenic | 40.0% | |
| AATGGTAGAGTTCTCAGCTT+TGG | - | chr3_4:29410944-29410963 | Msa0497160:intron | 40.0% | |
| ATGGTAGAGTTCTCAGCTTT+GGG | - | chr3_4:29410945-29410964 | Msa0497160:intron | 40.0% | |
| GTCAAATGATCTCAATCCTG+CGG | - | chr3_4:29410997-29411016 | Msa0497160:intron | 40.0% | |
| CTCAACGACACTCGAAATAA+TGG | - | chr3_4:29411031-29411050 | Msa0497160:intron | 40.0% | |
| CACAGTTTCAAAGTCTATGG+AGG | - | chr3_4:29411081-29411100 | Msa0497160:intron | 40.0% | |
| TCAAAGTCTATGGAGGAAAG+TGG | - | chr3_4:29411088-29411107 | Msa0497160:intron | 40.0% | |
| GAATTCCATGTATAAGGCCA+AGG | + | chr3_4:29411190-29411209 | None:intergenic | 40.0% | |
| !! | TGGCCTTATACATGGAATTC+CGG | - | chr3_4:29411190-29411209 | Msa0497160:intron | 40.0% |
| AAAATGACATGGGAAATCCC+GGG | + | chr3_4:29411246-29411265 | None:intergenic | 40.0% | |
| ! | CATTTTACCCTGCTCCTTTT+TGG | - | chr3_4:29411260-29411279 | Msa0497160:intron | 40.0% |
| GAACATTCCAAAAAGGAGCA+GGG | + | chr3_4:29411270-29411289 | None:intergenic | 40.0% | |
| !!! | CTCCTTTTTGGAATGTTCCT+TGG | - | chr3_4:29411272-29411291 | Msa0497160:intron | 40.0% |
| TTGGAATGTTCCTTGGTTTC+CGG | - | chr3_4:29411279-29411298 | Msa0497160:intron | 40.0% | |
| GAACTCTTTGCAGCTTCATT+TGG | + | chr3_4:29411487-29411506 | None:intergenic | 40.0% | |
| AATGAAGGTTTGAATAGGGG+TGG | - | chr3_4:29411532-29411551 | Msa0497160:intron | 40.0% | |
| GAATAGGGGTGGTATGATTA+AGG | - | chr3_4:29411543-29411562 | Msa0497160:intron | 40.0% | |
| ACATTGGAGAGGTTTGAACA+TGG | + | chr3_4:29411597-29411616 | None:intergenic | 40.0% | |
| TCAAACCTCTCCAATGTTGA+TGG | - | chr3_4:29411600-29411619 | Msa0497160:intron | 40.0% | |
| ATGCACATTGGTGAGAAAGA+TGG | + | chr3_4:29411745-29411764 | None:intergenic | 40.0% | |
| CTCACCAATGTGCATTTGAT+TGG | - | chr3_4:29411750-29411769 | Msa0497160:CDS | 40.0% | |
| !! | TTGATTGGACTTGTTGACCT+TGG | - | chr3_4:29411765-29411784 | Msa0497160:CDS | 40.0% |
| GAAGAATCAATGCATGCTCT+AGG | - | chr3_4:29411984-29412003 | Msa0497160:five_prime_UTR | 40.0% | |
| TGGTGAGGAAAATGTTTCGC+CGG | - | chr3_4:29409091-29409110 | Msa0497160:three_prime_UTR | 45.0% | |
| GTTGTCGTTCTTGATCTCTG+CGG | + | chr3_4:29410510-29410529 | None:intergenic | 45.0% | |
| GCAAGGCGTGTCAAAGATAT+TGG | - | chr3_4:29410759-29410778 | Msa0497160:intron | 45.0% | |
| CAAAGATATTGGACTGCAGG+CGG | - | chr3_4:29410770-29410789 | Msa0497160:intron | 45.0% | |
| CGGAACCATGAGAAATGTTC+CGG | - | chr3_4:29410790-29410809 | Msa0497160:intron | 45.0% | |
| ACCATGAGAAATGTTCCGGT+CGG | - | chr3_4:29410794-29410813 | Msa0497160:intron | 45.0% | |
| !! | TAGAGTTCTCAGCTTTGGGT+TGG | - | chr3_4:29410949-29410968 | Msa0497160:intron | 45.0% |
| TCTCAATCCTGCGGAGAAAA+AGG | - | chr3_4:29411006-29411025 | Msa0497160:intron | 45.0% | |
| ! | TTGAGAACCTTTTTCTCCGC+AGG | + | chr3_4:29411016-29411035 | None:intergenic | 45.0% |
| CTAGTCATGCATGGAACTTG+AGG | + | chr3_4:29411163-29411182 | None:intergenic | 45.0% | |
| AAATGACATGGGAAATCCCG+GGG | + | chr3_4:29411245-29411264 | None:intergenic | 45.0% | |
| GGAGCAGGGTAAAATGACAT+GGG | + | chr3_4:29411256-29411275 | None:intergenic | 45.0% | |
| AGGAGCAGGGTAAAATGACA+TGG | + | chr3_4:29411257-29411276 | None:intergenic | 45.0% | |
| GGAACATTCCAAAAAGGAGC+AGG | + | chr3_4:29411271-29411290 | None:intergenic | 45.0% | |
| ACTAGACCTTGGAGTTGTTG+CGG | + | chr3_4:29411314-29411333 | None:intergenic | 45.0% | |
| !! | TTCCCAAGCGTTGGAGATTT+CGG | + | chr3_4:29411337-29411356 | None:intergenic | 45.0% |
| GTTAGCCATCAACATTGGAG+AGG | + | chr3_4:29411608-29411627 | None:intergenic | 45.0% | |
| GTGATCTAGCTAAAGCTGCA+GGG | + | chr3_4:29411630-29411649 | None:intergenic | 45.0% | |
| AGTGATCTAGCTAAAGCTGC+AGG | + | chr3_4:29411631-29411650 | None:intergenic | 45.0% | |
| !! | TTGGACTTGTTGACCTTGGT+TGG | - | chr3_4:29411769-29411788 | Msa0497160:CDS | 45.0% |
| TGGTAGTCTCAGCACAAGAA+AGG | - | chr3_4:29411789-29411808 | Msa0497160:CDS | 45.0% | |
| GGTAGTCTCAGCACAAGAAA+GGG | - | chr3_4:29411790-29411809 | Msa0497160:CDS | 45.0% | |
| GTAGTCTCAGCACAAGAAAG+GGG | - | chr3_4:29411791-29411810 | Msa0497160:CDS | 45.0% | |
| !!! | TTTTTTGATTAAAAAAATTT+AGG | - | chr3_4:29409649-29409668 | Msa0497160:CDS | 5.0% |
| ATAAGAGCTTCACCTTCCCC+AGG | + | chr3_4:29409065-29409084 | None:intergenic | 50.0% | |
| GGTGAAGCTCTTATCACTGC+TGG | - | chr3_4:29409071-29409090 | Msa0497160:three_prime_UTR | 50.0% | |
| AGCTCTTATCACTGCTGGTG+AGG | - | chr3_4:29409076-29409095 | Msa0497160:three_prime_UTR | 50.0% | |
| TGAGGAAAATGTTTCGCCGG+TGG | - | chr3_4:29409094-29409113 | Msa0497160:three_prime_UTR | 50.0% | |
| TTCTTGATCTCTGCGGCATC+TGG | + | chr3_4:29410503-29410522 | None:intergenic | 50.0% | |
| ! | GGACACGGGAGTAATTTGTC+TGG | + | chr3_4:29410668-29410687 | None:intergenic | 50.0% |
| !!! | TCAGCCGCGCTATTTTTGCA+AGG | - | chr3_4:29410742-29410761 | Msa0497160:intron | 50.0% |
| CACGCCTTGCAAAAATAGCG+CGG | + | chr3_4:29410749-29410768 | None:intergenic | 50.0% | |
| ACCGACCGGAACATTTCTCA+TGG | + | chr3_4:29410798-29410817 | None:intergenic | 50.0% | |
| TGCATCAAGAGCCTCAGAGA+TGG | + | chr3_4:29410873-29410892 | None:intergenic | 50.0% | |
| !! | CAAGGAGCACTAGTCATGCA+TGG | + | chr3_4:29411172-29411191 | None:intergenic | 50.0% |
| CATGCATGACTAGTGCTCCT+TGG | - | chr3_4:29411170-29411189 | Msa0497160:intron | 50.0% | |
| !! | GTGCTCCTTGGCCTTATACA+TGG | - | chr3_4:29411182-29411201 | Msa0497160:intron | 50.0% |
| GCGCCGGAATTCCATGTATA+AGG | + | chr3_4:29411196-29411215 | None:intergenic | 50.0% | |
| GGACACAAAGTTTGTGGCGA+GGG | + | chr3_4:29411223-29411242 | None:intergenic | 50.0% | |
| AATGACATGGGAAATCCCGG+GGG | + | chr3_4:29411244-29411263 | None:intergenic | 50.0% | |
| ATACTCCCGCAACAACTCCA+AGG | - | chr3_4:29411305-29411324 | Msa0497160:intron | 50.0% | |
| CTAGACCTTGGAGTTGTTGC+GGG | + | chr3_4:29411313-29411332 | None:intergenic | 50.0% | |
| ! | GGAGATTTCGGACTAGACCT+TGG | + | chr3_4:29411325-29411344 | None:intergenic | 50.0% |
| AGTCCGAAATCTCCAACGCT+TGG | - | chr3_4:29411331-29411350 | Msa0497160:intron | 50.0% | |
| GTCCGAAATCTCCAACGCTT+GGG | - | chr3_4:29411332-29411351 | Msa0497160:intron | 50.0% | |
| AACGCTTGGGAAACACTCGA+GGG | - | chr3_4:29411345-29411364 | Msa0497160:intron | 50.0% | |
| !! | GCAGGGTTAGCCATCAACAT+TGG | + | chr3_4:29411613-29411632 | None:intergenic | 50.0% |
| TGTGCTGAGACTACCAACCA+AGG | + | chr3_4:29411785-29411804 | None:intergenic | 50.0% | |
| GGAAAATGTTTCGCCGGTGG+CGG | - | chr3_4:29409097-29409116 | Msa0497160:three_prime_UTR | 55.0% | |
| TTGATCTCTGCGGCATCTGG+TGG | + | chr3_4:29410500-29410519 | None:intergenic | 55.0% | |
| AGAAATGTTCCGGTCGGTGC+AGG | - | chr3_4:29410800-29410819 | Msa0497160:intron | 55.0% | |
| GAAATGTTCCGGTCGGTGCA+GGG | - | chr3_4:29410801-29410820 | Msa0497160:intron | 55.0% | |
| ! | TTTCTTCTCCCTGCACCGAC+CGG | + | chr3_4:29410812-29410831 | None:intergenic | 55.0% |
| TCGCCACATCACCATCTCTG+AGG | - | chr3_4:29410859-29410878 | Msa0497160:intron | 55.0% | |
| ! | GAGCCTCAGAGATGGTGATG+TGG | + | chr3_4:29410865-29410884 | None:intergenic | 55.0% |
| GGGACACAAAGTTTGTGGCG+AGG | + | chr3_4:29411224-29411243 | None:intergenic | 55.0% | |
| GCCACAAACTTTGTGTCCCC+CGG | - | chr3_4:29411225-29411244 | Msa0497160:intron | 55.0% | |
| CCACAAACTTTGTGTCCCCC+GGG | - | chr3_4:29411226-29411245 | Msa0497160:intron | 55.0% | |
| GGAGTATGAGCCGGAAACCA+AGG | + | chr3_4:29411292-29411311 | None:intergenic | 55.0% | |
| ! | GTTGTTGCGGGAGTATGAGC+CGG | + | chr3_4:29411301-29411320 | None:intergenic | 55.0% |
| CTCGAGTGTTTCCCAAGCGT+TGG | + | chr3_4:29411346-29411365 | None:intergenic | 55.0% | |
| CAACGCTTGGGAAACACTCG+AGG | - | chr3_4:29411344-29411363 | Msa0497160:intron | 55.0% | |
| TCTACATCCATCGCCGCCAC+CGG | + | chr3_4:29409113-29409132 | None:intergenic | 60.0% | |
| ATCTCTGCGGCATCTGGTGG+AGG | + | chr3_4:29410497-29410516 | None:intergenic | 60.0% | |
| TTGTGGCGAGGGAATTGCGC+CGG | + | chr3_4:29411212-29411231 | None:intergenic | 60.0% | |
| CCCGGGGGACACAAAGTTTG+TGG | + | chr3_4:29411229-29411248 | None:intergenic | 60.0% | |
| CGCTGTTGCAGCGTGGACAC+GGG | + | chr3_4:29410682-29410701 | None:intergenic | 65.0% | |
| GCGCTGTTGCAGCGTGGACA+CGG | + | chr3_4:29410683-29410702 | None:intergenic | 65.0% | |
| GTGTCCACGCTGCAACAGCG+CGG | - | chr3_4:29410682-29410701 | Msa0497160:intron | 65.0% | |
| ! | TGTTTCGCCGGTGGCGGCGA+TGG | - | chr3_4:29409103-29409122 | Msa0497160:three_prime_UTR | 70.0% |
| GTGTCCGCGCTGTTGCAGCG+TGG | + | chr3_4:29410689-29410708 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 29408855 | 29412034 | 29408855 | ID=Msa0497160;Name=Msa0497160 |
| chr3_4 | mRNA | 29408855 | 29412034 | 29408855 | ID=Msa0497160-mRNA-1;Parent=Msa0497160;Name=Msa0497160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=153|1|1|1|1|1|2|362|470 |
| chr3_4 | exon | 29408855 | 29410440 | 29408855 | ID=Msa0497160-mRNA-1:exon:6754;Parent=Msa0497160-mRNA-1 |
| chr3_4 | exon | 29411693 | 29412034 | 29411693 | ID=Msa0497160-mRNA-1:exon:6753;Parent=Msa0497160-mRNA-1 |
| chr3_4 | five_prime_UTR | 29411882 | 29412034 | 29411882 | ID=Msa0497160-mRNA-1:five_prime_utr;Parent=Msa0497160-mRNA-1 |
| chr3_4 | CDS | 29411693 | 29411881 | 29411693 | ID=Msa0497160-mRNA-1:cds;Parent=Msa0497160-mRNA-1 |
| chr3_4 | CDS | 29409217 | 29410440 | 29409217 | ID=Msa0497160-mRNA-1:cds;Parent=Msa0497160-mRNA-1 |
| chr3_4 | three_prime_UTR | 29408855 | 29409216 | 29408855 | ID=Msa0497160-mRNA-1:three_prime_utr;Parent=Msa0497160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
