Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837930 | XP_013453547.1 | 89.730 | 185 | 1 | 1 | 1 | 167 | 1 | 185 | 1.87e-115 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837930 | sp|C0SVM5|BBX19_ARATH | 57.831 | 166 | 58 | 4 | 1 | 165 | 1 | 155 | 1.26e-56 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837930 | A0A072UCQ4 | 89.730 | 185 | 1 | 1 | 1 | 167 | 1 | 185 | 8.95e-116 | 337 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0837930 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604010 | Msa0837930 | -0.832800 | 7.688930e-56 | -8.615850e-47 |
| Msa0605630 | Msa0837930 | -0.849001 | 4.278001e-60 | -8.615850e-47 |
| Msa0609660 | Msa0837930 | 0.802010 | 6.872844e-49 | -8.615850e-47 |
| Msa0646580 | Msa0837930 | -0.840284 | 9.536863e-58 | -8.615850e-47 |
| Msa0650500 | Msa0837930 | 0.816716 | 4.790523e-52 | -8.615850e-47 |
| Msa0652050 | Msa0837930 | -0.801492 | 8.777620e-49 | -8.615850e-47 |
| Msa0692240 | Msa0837930 | 0.814979 | 1.168846e-51 | -8.615850e-47 |
| Msa0725790 | Msa0837930 | 0.820328 | 7.268553e-53 | -8.615850e-47 |
| Msa0758300 | Msa0837930 | 0.892638 | 1.320341e-74 | -8.615850e-47 |
| Msa0764680 | Msa0837930 | 0.814209 | 1.731289e-51 | -8.615850e-47 |
| Msa0792480 | Msa0837930 | 0.846635 | 1.919069e-59 | -8.615850e-47 |
| Msa0837930 | Msa0867730 | -0.837184 | 6.038383e-57 | -8.615850e-47 |
| Msa0837930 | Msa0968610 | -0.816583 | 5.131537e-52 | -8.615850e-47 |
| Msa0837930 | Msa1130820 | 0.873058 | 1.972639e-67 | -8.615850e-47 |
| Msa0837930 | Msa1139790 | 0.813245 | 2.821763e-51 | -8.615850e-47 |
| Msa0837930 | Msa1157500 | -0.816962 | 4.219215e-52 | -8.615850e-47 |
| Msa0837930 | Msa1172610 | 0.815922 | 7.213490e-52 | -8.615850e-47 |
| Msa0837930 | Msa1212190 | -0.851458 | 8.757809e-61 | -8.615850e-47 |
| Msa0837930 | Msa1212270 | -0.855592 | 5.689378e-62 | -8.615850e-47 |
| Msa0837930 | Msa1259910 | -0.853601 | 2.145786e-61 | -8.615850e-47 |
| Msa0837930 | Msa1384360 | 0.817021 | 4.092405e-52 | -8.615850e-47 |
| Msa0837930 | Msa1406670 | 0.872228 | 3.736162e-67 | -8.615850e-47 |
| Msa0837930 | Msa1448870 | 0.872217 | 3.768777e-67 | -8.615850e-47 |
| Msa0140630 | Msa0837930 | -0.806685 | 7.296602e-50 | -8.615850e-47 |
| Msa0381500 | Msa0837930 | -0.821074 | 4.898452e-53 | -8.615850e-47 |
| Msa0402210 | Msa0837930 | -0.840831 | 6.859409e-58 | -8.615850e-47 |
| Msa0420790 | Msa0837930 | -0.836989 | 6.771942e-57 | -8.615850e-47 |
| Msa0423130 | Msa0837930 | 0.814376 | 1.589863e-51 | -8.615850e-47 |
| Msa0435980 | Msa0837930 | 0.823263 | 1.521904e-53 | -8.615850e-47 |
| Msa0438470 | Msa0837930 | -0.807137 | 5.852920e-50 | -8.615850e-47 |
| Msa0448980 | Msa0837930 | 0.825006 | 5.930342e-54 | -8.615850e-47 |
| Msa0469560 | Msa0837930 | 0.822823 | 1.927043e-53 | -8.615850e-47 |
| Msa0350070 | Msa0837930 | 0.805983 | 1.025567e-49 | -8.615850e-47 |
| Msa0355140 | Msa0837930 | -0.833727 | 4.515790e-56 | -8.615850e-47 |
| Msa0483770 | Msa0837930 | -0.843648 | 1.231713e-58 | -8.615850e-47 |
| Msa0491730 | Msa0837930 | 0.817526 | 3.150281e-52 | -8.615850e-47 |
| Msa0497160 | Msa0837930 | 0.834979 | 2.190601e-56 | -8.615850e-47 |
| Msa0512350 | Msa0837930 | -0.801986 | 6.951099e-49 | -8.615850e-47 |
| Msa0519950 | Msa0837930 | -0.808424 | 3.118439e-50 | -8.615850e-47 |
| Msa0527690 | Msa0837930 | 0.819932 | 8.958776e-53 | -8.615850e-47 |
| Msa0550120 | Msa0837930 | -0.829294 | 5.577734e-55 | -8.615850e-47 |
| Msa0550150 | Msa0837930 | -0.840948 | 6.391625e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837930 | MtrunA17_Chr5g0405151 | 90.217 | 184 | 0 | 1 | 1 | 166 | 1 | 184 | 9.96e-119 | 335 |
| Msa0837930 | MtrunA17_Chr2g0314671 | 55.294 | 85 | 37 | 1 | 1 | 84 | 1 | 85 | 1.11e-24 | 99.0 |
| Msa0837930 | MtrunA17_Chr2g0329511 | 49.462 | 93 | 46 | 1 | 1 | 92 | 1 | 93 | 1.55e-23 | 94.7 |
| Msa0837930 | MtrunA17_Chr4g0033641 | 48.387 | 93 | 47 | 1 | 1 | 92 | 1 | 93 | 1.40e-21 | 89.4 |
| Msa0837930 | MtrunA17_Chr3g0145061 | 44.186 | 86 | 46 | 1 | 1 | 84 | 1 | 86 | 2.40e-21 | 88.6 |
| Msa0837930 | MtrunA17_Chr3g0142221 | 47.126 | 87 | 43 | 1 | 1 | 84 | 1 | 87 | 1.55e-20 | 86.3 |
| Msa0837930 | MtrunA17_Chr4g0035651 | 44.186 | 86 | 46 | 1 | 1 | 84 | 1 | 86 | 3.42e-20 | 85.5 |
| Msa0837930 | MtrunA17_Chr3g0136701 | 51.852 | 81 | 31 | 1 | 4 | 84 | 5 | 77 | 3.98e-20 | 86.7 |
| Msa0837930 | MtrunA17_Chr1g0155811 | 47.674 | 86 | 43 | 1 | 1 | 84 | 1 | 86 | 3.24e-19 | 83.6 |
| Msa0837930 | MtrunA17_Chr1g0150471 | 46.914 | 81 | 35 | 1 | 4 | 84 | 5 | 77 | 3.89e-18 | 81.3 |
| Msa0837930 | MtrunA17_Chr7g0220721 | 48.750 | 80 | 33 | 1 | 5 | 84 | 26 | 97 | 1.27e-17 | 80.5 |
| Msa0837930 | MtrunA17_Chr4g0072871 | 43.210 | 81 | 38 | 1 | 4 | 84 | 21 | 93 | 7.50e-16 | 75.5 |
| Msa0837930 | MtrunA17_Chr7g0268691 | 38.750 | 80 | 41 | 1 | 5 | 84 | 20 | 91 | 6.15e-13 | 67.0 |
| Msa0837930 | MtrunA17_Chr5g0429341 | 36.559 | 93 | 49 | 2 | 1 | 93 | 1 | 83 | 7.95e-12 | 63.9 |
| Msa0837930 | MtrunA17_Chr3g0120711 | 38.095 | 84 | 44 | 1 | 1 | 84 | 1 | 76 | 1.97e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837930 | AT4G38960.1 | 57.831 | 166 | 58 | 4 | 1 | 165 | 1 | 155 | 1.28e-57 | 181 |
| Msa0837930 | AT4G38960.6 | 57.831 | 166 | 58 | 4 | 1 | 165 | 1 | 155 | 1.28e-57 | 181 |
| Msa0837930 | AT2G21320.1 | 52.717 | 184 | 42 | 4 | 1 | 166 | 1 | 157 | 4.70e-54 | 171 |
| Msa0837930 | AT4G38960.3 | 45.933 | 209 | 58 | 5 | 1 | 165 | 1 | 198 | 1.21e-49 | 162 |
| Msa0837930 | AT4G38960.4 | 47.857 | 140 | 61 | 4 | 34 | 172 | 1 | 129 | 4.30e-36 | 125 |
| Msa0837930 | AT4G38960.5 | 50.376 | 133 | 54 | 4 | 34 | 165 | 1 | 122 | 2.56e-34 | 120 |
| Msa0837930 | AT4G38960.2 | 50.376 | 133 | 54 | 4 | 34 | 165 | 1 | 122 | 2.56e-34 | 120 |
| Msa0837930 | AT1G78600.1 | 55.294 | 85 | 37 | 1 | 1 | 84 | 1 | 85 | 5.06e-26 | 102 |
| Msa0837930 | AT1G78600.2 | 55.294 | 85 | 37 | 1 | 1 | 84 | 1 | 85 | 7.05e-26 | 102 |
| Msa0837930 | AT1G06040.2 | 48.387 | 93 | 47 | 1 | 1 | 92 | 1 | 93 | 1.26e-21 | 88.2 |
| Msa0837930 | AT4G39070.1 | 47.674 | 86 | 43 | 1 | 1 | 84 | 1 | 86 | 3.40e-21 | 89.0 |
| Msa0837930 | AT1G75540.1 | 46.591 | 88 | 43 | 1 | 1 | 84 | 1 | 88 | 4.82e-21 | 90.1 |
| Msa0837930 | AT1G06040.1 | 48.387 | 93 | 47 | 1 | 1 | 92 | 1 | 93 | 5.28e-21 | 88.6 |
| Msa0837930 | AT2G24790.1 | 50.617 | 81 | 32 | 1 | 4 | 84 | 7 | 79 | 4.24e-20 | 86.7 |
| Msa0837930 | AT2G24790.2 | 50.617 | 81 | 32 | 1 | 4 | 84 | 7 | 79 | 5.44e-20 | 85.1 |
| Msa0837930 | AT2G31380.1 | 48.387 | 93 | 47 | 1 | 1 | 92 | 1 | 93 | 1.03e-19 | 84.7 |
| Msa0837930 | AT5G24930.1 | 48.148 | 81 | 34 | 1 | 4 | 84 | 5 | 77 | 5.59e-19 | 84.7 |
| Msa0837930 | AT5G15850.1 | 50.000 | 80 | 32 | 1 | 5 | 84 | 12 | 83 | 6.12e-19 | 84.3 |
| Msa0837930 | AT3G02380.1 | 48.750 | 80 | 33 | 1 | 5 | 84 | 16 | 87 | 4.99e-18 | 81.6 |
| Msa0837930 | AT5G15840.1 | 50.000 | 80 | 32 | 1 | 5 | 84 | 20 | 91 | 1.42e-17 | 80.9 |
| Msa0837930 | AT5G15840.2 | 50.000 | 80 | 32 | 1 | 5 | 84 | 20 | 91 | 1.77e-17 | 79.3 |
| Msa0837930 | AT4G10240.1 | 43.956 | 91 | 44 | 1 | 1 | 84 | 1 | 91 | 4.07e-17 | 76.3 |
| Msa0837930 | AT2G47890.1 | 44.444 | 81 | 37 | 1 | 4 | 84 | 12 | 84 | 6.58e-16 | 75.9 |
| Msa0837930 | AT2G47890.3 | 44.444 | 81 | 37 | 1 | 4 | 84 | 12 | 84 | 7.43e-16 | 75.1 |
| Msa0837930 | AT2G47890.2 | 44.444 | 81 | 37 | 1 | 4 | 84 | 12 | 84 | 1.84e-15 | 73.2 |
| Msa0837930 | AT5G57660.1 | 42.500 | 80 | 34 | 2 | 5 | 84 | 22 | 89 | 3.38e-13 | 68.2 |
| Msa0837930 | AT1G28050.1 | 42.169 | 83 | 40 | 1 | 2 | 84 | 6 | 80 | 8.98e-13 | 67.0 |
| Msa0837930 | AT2G33500.2 | 40.000 | 80 | 40 | 1 | 5 | 84 | 12 | 83 | 3.26e-11 | 62.4 |
| Msa0837930 | AT2G33500.1 | 40.000 | 80 | 40 | 1 | 5 | 84 | 12 | 83 | 3.26e-11 | 62.4 |
| Msa0837930 | AT1G68190.1 | 37.931 | 87 | 46 | 1 | 1 | 87 | 10 | 88 | 8.50e-11 | 61.2 |
| Msa0837930 | AT1G68190.3 | 37.931 | 87 | 46 | 1 | 1 | 87 | 10 | 88 | 8.50e-11 | 61.2 |
| Msa0837930 | AT1G68190.2 | 37.931 | 87 | 46 | 1 | 1 | 87 | 39 | 117 | 9.79e-11 | 61.2 |
Find 62 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGATGATGGAAAGTTAT+AGG | 0.287871 | 5_4:+12038876 | None:intergenic |
| TGTTCATGTATTCTGTTGTT+AGG | 0.314824 | 5_4:+12037190 | None:intergenic |
| CTCTTTGTTTCATAGTTTCC+AGG | 0.319859 | 5_4:-12037412 | Msa0837930:intron |
| TTCTGCCATCAATTGTAGTT+TGG | 0.326157 | 5_4:+12036050 | None:intergenic |
| AGTTAGCTAGTAGACATGTT+AGG | 0.334611 | 5_4:-12038007 | Msa0837930:CDS |
| TTGCTTTGTAGCACGATCTA+TGG | 0.342553 | 5_4:+12036299 | None:intergenic |
| TTTAGCCAAACTACAATTGA+TGG | 0.356401 | 5_4:-12036055 | Msa0837930:three_prime_UTR |
| TTAGAATTCCCATCAGCATT+AGG | 0.367971 | 5_4:+12037247 | None:intergenic |
| TGAACATGCATCAAATAATC+AGG | 0.417562 | 5_4:-12037173 | Msa0837930:intron |
| AGTGAAATTGATAAACGTAT+TGG | 0.423281 | 5_4:-12037049 | Msa0837930:CDS |
| CAACACACTATTCATTGAAA+GGG | 0.434646 | 5_4:+12036175 | None:intergenic |
| TTTCTGATGTAAGATCTTGT+TGG | 0.443715 | 5_4:+12036326 | None:intergenic |
| CTTACAAACCCACATGGATT+CGG | 0.449289 | 5_4:-12038789 | Msa0837930:intron |
| GCCGGGTTGTCTGCATTACT+AGG | 0.455216 | 5_4:+12037382 | None:intergenic |
| AAGATGGAGGTTGTTGATGA+TGG | 0.460545 | 5_4:+12038865 | None:intergenic |
| GAGAGAAGCAACAAAATCAT+AGG | 0.461871 | 5_4:-12037294 | Msa0837930:CDS |
| GGATCTAGAGGTTGTGAAGC+CGG | 0.462473 | 5_4:+12037364 | None:intergenic |
| AACGTATTGGCTGTTGCTAC+TGG | 0.479764 | 5_4:-12037036 | Msa0837930:intron |
| TCAGCATTAGGTTCTGAAGT+TGG | 0.480629 | 5_4:+12037259 | None:intergenic |
| CAGCCATAGGTTGTGCTACA+AGG | 0.481804 | 5_4:-12036359 | Msa0837930:CDS |
| GTGATGAAGTTTGATGAAGA+TGG | 0.483306 | 5_4:+12038849 | None:intergenic |
| TCAACACACTATTCATTGAA+AGG | 0.483387 | 5_4:+12036174 | None:intergenic |
| TCGCACCGCGGCACGTCACT+CGG | 0.487301 | 5_4:+12037969 | None:intergenic |
| CATATCACATTGCAAACAAA+GGG | 0.494623 | 5_4:+12037807 | None:intergenic |
| CTGCCTTGTAGCACAACCTA+TGG | 0.498589 | 5_4:+12036356 | None:intergenic |
| ACCCTTCAACCCAAACCAAA+AGG | 0.499384 | 5_4:-12038921 | Msa0837930:five_prime_UTR |
| GTTAGCTAGTAGACATGTTA+GGG | 0.499857 | 5_4:-12038006 | Msa0837930:CDS |
| TTAGGTTCTGAAGTTGGAAC+CGG | 0.500416 | 5_4:+12037265 | None:intergenic |
| GCATTACTAGGTTTATCGCC+TGG | 0.511209 | 5_4:+12037394 | None:intergenic |
| TAGAATTTGTTCTCTCATGT+AGG | 0.518227 | 5_4:-12036266 | Msa0837930:CDS |
| TGCTGATGGGAATTCTAAGA+TGG | 0.518367 | 5_4:-12037242 | Msa0837930:CDS |
| AGAAGTATCCTCTATGTCAT+GGG | 0.518462 | 5_4:+12036108 | None:intergenic |
| AAGAAGTATCCTCTATGTCA+TGG | 0.518988 | 5_4:+12036107 | None:intergenic |
| GATCCAGGTGATATTAAAAG+AGG | 0.532561 | 5_4:-12037346 | Msa0837930:CDS |
| GATCTAGAGGTTGTGAAGCC+GGG | 0.534120 | 5_4:+12037365 | None:intergenic |
| TCATATCACATTGCAAACAA+AGG | 0.534969 | 5_4:+12037806 | None:intergenic |
| TTAATATCACCTGGATCTAG+AGG | 0.539036 | 5_4:+12037352 | None:intergenic |
| GCTTCACAACCTCTAGATCC+AGG | 0.543997 | 5_4:-12037361 | Msa0837930:CDS |
| TTCTTCTATTGCGAAACAGA+TGG | 0.548785 | 5_4:-12037835 | Msa0837930:CDS |
| ACTTCAGAACCTAATGCTGA+TGG | 0.548946 | 5_4:-12037256 | Msa0837930:CDS |
| ATGAATATGAAAGAAGAGAG+AGG | 0.550001 | 5_4:+12039020 | None:intergenic |
| GCTAGTAGACATGTTAGGGT+TGG | 0.553453 | 5_4:-12038002 | Msa0837930:CDS |
| ACCTAGTAATGCAGACAACC+CGG | 0.558690 | 5_4:-12037383 | Msa0837930:CDS |
| AACTTTCTTACAAACCCACA+TGG | 0.572929 | 5_4:-12038795 | Msa0837930:five_prime_UTR |
| AACACACTATTCATTGAAAG+GGG | 0.575642 | 5_4:+12036176 | None:intergenic |
| ACAAAATCATAGGATGCCTC+CGG | 0.578363 | 5_4:-12037284 | Msa0837930:CDS |
| CACAAACAACGACAGAAACA+AGG | 0.582378 | 5_4:+12036012 | None:intergenic |
| CAAGTCCGAGTGACGTGCCG+CGG | 0.583612 | 5_4:-12037974 | Msa0837930:CDS |
| CTTCAGAACCTAATGCTGAT+GGG | 0.588602 | 5_4:-12037255 | Msa0837930:CDS |
| CTGTCGTGCTTGTGATGAGA+AGG | 0.598560 | 5_4:-12038526 | Msa0837930:intron |
| GAAGTATCCTCTATGTCATG+GGG | 0.619901 | 5_4:+12036109 | None:intergenic |
| GGTTCTGAAGTTGGAACCGG+AGG | 0.621508 | 5_4:+12037268 | None:intergenic |
| ATGAAGTTTGATGAAGATGG+AGG | 0.626151 | 5_4:+12038852 | None:intergenic |
| CAACGACAGAAACAAGGCAG+CGG | 0.644302 | 5_4:+12036018 | None:intergenic |
| GACATATGTGAGAATGCCCC+TGG | 0.645262 | 5_4:-12037948 | Msa0837930:intron |
| AGATATTCACCGAATCCATG+TGG | 0.651589 | 5_4:+12038780 | None:intergenic |
| GATATTCACCGAATCCATGT+GGG | 0.655668 | 5_4:+12038781 | None:intergenic |
| CAATTGATGGCAGAAATCAA+AGG | 0.686059 | 5_4:-12036042 | Msa0837930:three_prime_UTR |
| ACACACTATTCATTGAAAGG+GGG | 0.688107 | 5_4:+12036177 | None:intergenic |
| AGCAGCACAGAAAACTATAG+CGG | 0.689026 | 5_4:+12038563 | None:intergenic |
| AAGTATCCTCTATGTCATGG+GGG | 0.741548 | 5_4:+12036110 | None:intergenic |
| TTCTCACATATGTCGCACCG+CGG | 0.743597 | 5_4:+12037957 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATCAAAAAAACTATGTT+GGG | + | chr5_4:12036249-12036268 | None:intergenic | 15.0% |
| !!! | TTTTATCAAAAAAACTATGT+TGG | + | chr5_4:12036250-12036269 | None:intergenic | 15.0% |
| !!! | TATTTTAAAGTAGATAATTC+AGG | - | chr5_4:12036353-12036372 | Msa0837930:CDS | 15.0% |
| !!! | ATTTGATTTGATATTTTTTG+TGG | - | chr5_4:12036809-12036828 | Msa0837930:intron | 15.0% |
| !!! | TAATAATTTTGATACATTGA+GGG | + | chr5_4:12037439-12037458 | None:intergenic | 15.0% |
| !!! | ATAATAATTTTGATACATTG+AGG | + | chr5_4:12037440-12037459 | None:intergenic | 15.0% |
| !!! | TTTTACATAGAAACTTTTTA+AGG | + | chr5_4:12038478-12038497 | None:intergenic | 15.0% |
| !! | GGAAAAATAACAAAATAATA+AGG | + | chr5_4:12038528-12038547 | None:intergenic | 15.0% |
| !!! | GACCATCAATTTTTTATAAT+TGG | - | chr5_4:12036633-12036652 | Msa0837930:intron | 20.0% |
| !! | GTCCAATTATAAAAAATTGA+TGG | + | chr5_4:12036638-12036657 | None:intergenic | 20.0% |
| !! | AAACATTACACTTACAAAAA+AGG | + | chr5_4:12036660-12036679 | None:intergenic | 20.0% |
| !! | TTGTGTAAATTCAAAATCTA+AGG | - | chr5_4:12036834-12036853 | Msa0837930:intron | 20.0% |
| !! | GATTATACTTAAAACTAACT+TGG | + | chr5_4:12036947-12036966 | None:intergenic | 20.0% |
| !!! | AGTTAGTTTTAAGTATAATC+TGG | - | chr5_4:12036947-12036966 | Msa0837930:intron | 20.0% |
| !!! | TTTTAAGTATAATCTGGTAT+TGG | - | chr5_4:12036953-12036972 | Msa0837930:intron | 20.0% |
| !!! | AATTCAAGACTAATTCATTT+TGG | + | chr5_4:12037369-12037388 | None:intergenic | 20.0% |
| !!! | AAATATATCTTGAACTTTTG+CGG | - | chr5_4:12038495-12038514 | Msa0837930:intron | 20.0% |
| !!! | TAATGTTGTTTTGTTTATCT+TGG | - | chr5_4:12038688-12038707 | Msa0837930:intron | 20.0% |
| ! | TTAACCTAATCCAACATAAA+TGG | + | chr5_4:12036736-12036755 | None:intergenic | 25.0% |
| ! | TTATGAAACTAAATTGCAAG+TGG | + | chr5_4:12036772-12036791 | None:intergenic | 25.0% |
| !!! | AATGACGATTTTAGCTTATA+AGG | + | chr5_4:12036885-12036904 | None:intergenic | 25.0% |
| ! | TTCTTTAAACAAAATCGAGA+AGG | + | chr5_4:12036922-12036941 | None:intergenic | 25.0% |
| !! | GACTAATTCATTTTGGATAA+AGG | + | chr5_4:12037362-12037381 | None:intergenic | 25.0% |
| !!! | TTTGAAATTTTGATACGTTC+AGG | - | chr5_4:12037539-12037558 | Msa0837930:intron | 25.0% |
| !!! | TTGAAATTTTGATACGTTCA+GGG | - | chr5_4:12037540-12037559 | Msa0837930:intron | 25.0% |
| ! | GGTATTATACATACATTTGA+AGG | + | chr5_4:12037639-12037658 | None:intergenic | 25.0% |
| ! | AGTGAAATTGATAAACGTAT+TGG | - | chr5_4:12038021-12038040 | Msa0837930:CDS | 25.0% |
| ! | CGCTAAATATGAATAATTTC+TGG | - | chr5_4:12038070-12038089 | Msa0837930:intron | 25.0% |
| ! | ATAGCTAATGTAGTTATGAT+TGG | - | chr5_4:12038145-12038164 | Msa0837930:intron | 25.0% |
| ! | TAGCTAATGTAGTTATGATT+GGG | - | chr5_4:12038146-12038165 | Msa0837930:intron | 25.0% |
| !!! | AGTGTGTTGAAATTTGTTTT+TGG | - | chr5_4:12038909-12038928 | Msa0837930:five_prime_UTR | 25.0% |
| ATGAATATGAAAGAAGAGAG+AGG | + | chr5_4:12036053-12036072 | None:intergenic | 30.0% | |
| TTTGAGAAGTGAAAAAGCTT+TGG | + | chr5_4:12036111-12036130 | None:intergenic | 30.0% | |
| !! | ATAGGATTTTGAAGGAGTTT+GGG | + | chr5_4:12036179-12036198 | None:intergenic | 30.0% |
| !! | TATAGGATTTTGAAGGAGTT+TGG | + | chr5_4:12036180-12036199 | None:intergenic | 30.0% |
| ! | GGAAAGTTATAGGATTTTGA+AGG | + | chr5_4:12036187-12036206 | None:intergenic | 30.0% |
| !! | TGTTGATGATGGAAAGTTAT+AGG | + | chr5_4:12036197-12036216 | None:intergenic | 30.0% |
| TTGAATGAGTCCATTTATGT+TGG | - | chr5_4:12036723-12036742 | Msa0837930:intron | 30.0% | |
| ! | TGTTGGATTAGGTTAAAGAT+TGG | - | chr5_4:12036740-12036759 | Msa0837930:intron | 30.0% |
| GATTAGGTTAAAGATTGGAT+TGG | - | chr5_4:12036745-12036764 | Msa0837930:intron | 30.0% | |
| CTTATAAGGTCAAACTCTTA+CGG | + | chr5_4:12036871-12036890 | None:intergenic | 30.0% | |
| !! | TGGAATTTGATTGATTTTCC+TGG | - | chr5_4:12036973-12036992 | Msa0837930:intron | 30.0% |
| !! | TTGCAACTTTTGAAAATTGC+AGG | - | chr5_4:12037025-12037044 | Msa0837930:intron | 30.0% |
| AAAGAAGAAACTTCTTACCA+GGG | + | chr5_4:12037142-12037161 | None:intergenic | 30.0% | |
| AAAAGAAGAAACTTCTTACC+AGG | + | chr5_4:12037143-12037162 | None:intergenic | 30.0% | |
| CATATCACATTGCAAACAAA+GGG | + | chr5_4:12037266-12037285 | None:intergenic | 30.0% | |
| TCATATCACATTGCAAACAA+AGG | + | chr5_4:12037267-12037286 | None:intergenic | 30.0% | |
| TGTGATATGATAGTTCATGT+TGG | - | chr5_4:12037277-12037296 | Msa0837930:CDS | 30.0% | |
| ATGGAAGATATCTTCTCTTT+AGG | - | chr5_4:12037314-12037333 | Msa0837930:CDS | 30.0% | |
| ! | TTTTAATCCTTGAATGTGTG+AGG | - | chr5_4:12037400-12037419 | Msa0837930:CDS | 30.0% |
| GACTAATAAAAGACACATTC+AGG | + | chr5_4:12037472-12037491 | None:intergenic | 30.0% | |
| ! | GTGTCTTTTATTAGTCAGTT+TGG | - | chr5_4:12037476-12037495 | Msa0837930:intron | 30.0% |
| ACTAACAAAAGATACATCTG+AGG | + | chr5_4:12037503-12037522 | None:intergenic | 30.0% | |
| !! | ATCTTTTGTTAGTCACTTTC+AGG | - | chr5_4:12037510-12037529 | Msa0837930:intron | 30.0% |
| !! | TCTTTTGTTAGTCACTTTCA+GGG | - | chr5_4:12037511-12037530 | Msa0837930:intron | 30.0% |
| TCCACTTCCTAAACAAAAAA+TGG | - | chr5_4:12037753-12037772 | Msa0837930:intron | 30.0% | |
| CCACTTCCTAAACAAAAAAT+GGG | - | chr5_4:12037754-12037773 | Msa0837930:intron | 30.0% | |
| !!! | TTCTCTCCCATTTTTTGTTT+AGG | + | chr5_4:12037763-12037782 | None:intergenic | 30.0% |
| TGTTCATGTATTCTGTTGTT+AGG | + | chr5_4:12037883-12037902 | None:intergenic | 30.0% | |
| TGAACATGCATCAAATAATC+AGG | - | chr5_4:12037897-12037916 | Msa0837930:intron | 30.0% | |
| AATAATCAGGTTAGAGTTCA+TGG | - | chr5_4:12037910-12037929 | Msa0837930:intron | 30.0% | |
| ATAATCAGGTTAGAGTTCAT+GGG | - | chr5_4:12037911-12037930 | Msa0837930:intron | 30.0% | |
| TGTAGTTATGATTGGGATAT+AGG | - | chr5_4:12038153-12038172 | Msa0837930:intron | 30.0% | |
| ! | CATTGGACTATCTCAAATTT+TGG | + | chr5_4:12038263-12038282 | None:intergenic | 30.0% |
| GATGTATCTTTAAGTAAAGC+TGG | + | chr5_4:12038353-12038372 | None:intergenic | 30.0% | |
| TATCCATGTGTTTATGATTG+TGG | - | chr5_4:12038440-12038459 | Msa0837930:intron | 30.0% | |
| AAACCACAATCATAAACACA+TGG | + | chr5_4:12038446-12038465 | None:intergenic | 30.0% | |
| ATTGAAGACAGAAAGATGAA+TGG | + | chr5_4:12038561-12038580 | None:intergenic | 30.0% | |
| AAATCAAACACACGCTTAAA+AGG | + | chr5_4:12038614-12038633 | None:intergenic | 30.0% | |
| TTTCTGATGTAAGATCTTGT+TGG | + | chr5_4:12038747-12038766 | None:intergenic | 30.0% | |
| ! | TAGAATTTGTTCTCTCATGT+AGG | - | chr5_4:12038804-12038823 | Msa0837930:five_prime_UTR | 30.0% |
| AACACACTATTCATTGAAAG+GGG | + | chr5_4:12038897-12038916 | None:intergenic | 30.0% | |
| CAACACACTATTCATTGAAA+GGG | + | chr5_4:12038898-12038917 | None:intergenic | 30.0% | |
| TCAACACACTATTCATTGAA+AGG | + | chr5_4:12038899-12038918 | None:intergenic | 30.0% | |
| TTTAGCCAAACTACAATTGA+TGG | - | chr5_4:12039015-12039034 | Msa0837930:five_prime_UTR | 30.0% | |
| !! | TAGGATTTTGAAGGAGTTTG+GGG | + | chr5_4:12036178-12036197 | None:intergenic | 35.0% |
| ATGAAGTTTGATGAAGATGG+AGG | + | chr5_4:12036221-12036240 | None:intergenic | 35.0% | |
| GTGATGAAGTTTGATGAAGA+TGG | + | chr5_4:12036224-12036243 | None:intergenic | 35.0% | |
| AACTTTCTTACAAACCCACA+TGG | - | chr5_4:12036275-12036294 | Msa0837930:CDS | 35.0% | |
| GAGTCCATTTATGTTGGATT+AGG | - | chr5_4:12036729-12036748 | Msa0837930:intron | 35.0% | |
| TTAGTTGAAAGACATTGACC+AGG | + | chr5_4:12036994-12037013 | None:intergenic | 35.0% | |
| GGTCAATGTCTTTCAACTAA+TGG | - | chr5_4:12036994-12037013 | Msa0837930:intron | 35.0% | |
| AGTTAGCTAGTAGACATGTT+AGG | - | chr5_4:12037063-12037082 | Msa0837930:CDS | 35.0% | |
| GTTAGCTAGTAGACATGTTA+GGG | - | chr5_4:12037064-12037083 | Msa0837930:CDS | 35.0% | |
| AAGAAGAAACTTCTTACCAG+GGG | + | chr5_4:12037141-12037160 | None:intergenic | 35.0% | |
| ! | GAAGTTTCTTCTTTTGATCC+TGG | - | chr5_4:12037148-12037167 | Msa0837930:intron | 35.0% |
| TTCTTCTATTGCGAAACAGA+TGG | - | chr5_4:12037235-12037254 | Msa0837930:CDS | 35.0% | |
| GATATGATAGTTCATGTTGG+TGG | - | chr5_4:12037280-12037299 | Msa0837930:CDS | 35.0% | |
| TGACATCGTTTCACACATTT+AGG | - | chr5_4:12037570-12037589 | Msa0837930:intron | 35.0% | |
| GACATCGTTTCACACATTTA+GGG | - | chr5_4:12037571-12037590 | Msa0837930:intron | 35.0% | |
| CTGGAAACTATGAAACAAAG+AGG | + | chr5_4:12037660-12037679 | None:intergenic | 35.0% | |
| ! | CTCTTTGTTTCATAGTTTCC+AGG | - | chr5_4:12037658-12037677 | Msa0837930:intron | 35.0% |
| TTAATATCACCTGGATCTAG+AGG | + | chr5_4:12037721-12037740 | None:intergenic | 35.0% | |
| GATCCAGGTGATATTAAAAG+AGG | - | chr5_4:12037724-12037743 | Msa0837930:intron | 35.0% | |
| ! | TGTCCTCTTTTAATATCACC+TGG | + | chr5_4:12037730-12037749 | None:intergenic | 35.0% |
| !!! | CCCATTTTTTGTTTAGGAAG+TGG | + | chr5_4:12037757-12037776 | None:intergenic | 35.0% |
| GAGAGAAGCAACAAAATCAT+AGG | - | chr5_4:12037776-12037795 | Msa0837930:intron | 35.0% | |
| TTAGAATTCCCATCAGCATT+AGG | + | chr5_4:12037826-12037845 | None:intergenic | 35.0% | |
| ! | ATGAGATGAAATAGTGGAAC+TGG | + | chr5_4:12038313-12038332 | None:intergenic | 35.0% |
| CACAAGATGAGATGAAATAG+TGG | + | chr5_4:12038319-12038338 | None:intergenic | 35.0% | |
| CTACAGAAATTAACACTGCA+AGG | - | chr5_4:12038413-12038432 | Msa0837930:intron | 35.0% | |
| ! | TATCTTGAACTTTTGCGGAT+TGG | - | chr5_4:12038500-12038519 | Msa0837930:intron | 35.0% |
| ! | AAGATGAATGGTTTGTCGTT+CGG | + | chr5_4:12038549-12038568 | None:intergenic | 35.0% |
| GTTCTACTTTATCCTGTCAT+TGG | + | chr5_4:12038592-12038611 | None:intergenic | 35.0% | |
| ACACACTATTCATTGAAAGG+GGG | + | chr5_4:12038896-12038915 | None:intergenic | 35.0% | |
| !! | AGAAGTATCCTCTATGTCAT+GGG | + | chr5_4:12038965-12038984 | None:intergenic | 35.0% |
| !! | AAGAAGTATCCTCTATGTCA+TGG | + | chr5_4:12038966-12038985 | None:intergenic | 35.0% |
| TTCTGCCATCAATTGTAGTT+TGG | + | chr5_4:12039023-12039042 | None:intergenic | 35.0% | |
| ! | CAATTGATGGCAGAAATCAA+AGG | - | chr5_4:12039028-12039047 | Msa0837930:five_prime_UTR | 35.0% |
| !!! | ACCTTTTGGTTTGGGTTGAA+GGG | + | chr5_4:12036153-12036172 | None:intergenic | 40.0% |
| !! | AGGATTTTGAAGGAGTTTGG+GGG | + | chr5_4:12036177-12036196 | None:intergenic | 40.0% |
| ! | AAGATGGAGGTTGTTGATGA+TGG | + | chr5_4:12036208-12036227 | None:intergenic | 40.0% |
| CTTACAAACCCACATGGATT+CGG | - | chr5_4:12036281-12036300 | Msa0837930:CDS | 40.0% | |
| GATATTCACCGAATCCATGT+GGG | + | chr5_4:12036292-12036311 | None:intergenic | 40.0% | |
| AGATATTCACCGAATCCATG+TGG | + | chr5_4:12036293-12036312 | None:intergenic | 40.0% | |
| AGCAGCACAGAAAACTATAG+CGG | + | chr5_4:12036510-12036529 | None:intergenic | 40.0% | |
| ATCAGAAGAACAACACTACC+AGG | + | chr5_4:12037169-12037188 | None:intergenic | 40.0% | |
| TCTCTTTAGGCAAAGAGTTG+AGG | - | chr5_4:12037327-12037346 | Msa0837930:CDS | 40.0% | |
| ACAAAATCATAGGATGCCTC+CGG | - | chr5_4:12037786-12037805 | Msa0837930:intron | 40.0% | |
| !! | TTAGGTTCTGAAGTTGGAAC+CGG | + | chr5_4:12037808-12037827 | None:intergenic | 40.0% |
| !! | TCAGCATTAGGTTCTGAAGT+TGG | + | chr5_4:12037814-12037833 | None:intergenic | 40.0% |
| ACTTCAGAACCTAATGCTGA+TGG | - | chr5_4:12037814-12037833 | Msa0837930:CDS | 40.0% | |
| CTTCAGAACCTAATGCTGAT+GGG | - | chr5_4:12037815-12037834 | Msa0837930:CDS | 40.0% | |
| ! | TGCTGATGGGAATTCTAAGA+TGG | - | chr5_4:12037828-12037847 | Msa0837930:CDS | 40.0% |
| GGAAGTAAACTTTGTTCTGC+TGG | - | chr5_4:12037932-12037951 | Msa0837930:intron | 40.0% | |
| GTGGATGATTGCTCATTCAT+TGG | + | chr5_4:12038280-12038299 | None:intergenic | 40.0% | |
| TGTAGAATGCATCAGTAGAG+AGG | + | chr5_4:12038398-12038417 | None:intergenic | 40.0% | |
| CAATGCAATCATCCAATGAC+AGG | - | chr5_4:12038577-12038596 | Msa0837930:CDS | 40.0% | |
| TATGTCAATCACACGTGCTT+TGG | + | chr5_4:12038650-12038669 | None:intergenic | 40.0% | |
| TTGTTTATCTTGGCAGCCAT+AGG | - | chr5_4:12038698-12038717 | Msa0837930:intron | 40.0% | |
| TTGCTTTGTAGCACGATCTA+TGG | + | chr5_4:12038774-12038793 | None:intergenic | 40.0% | |
| AAGTATCCTCTATGTCATGG+GGG | + | chr5_4:12038963-12038982 | None:intergenic | 40.0% | |
| ! | GAAGTATCCTCTATGTCATG+GGG | + | chr5_4:12038964-12038983 | None:intergenic | 40.0% |
| CACAAACAACGACAGAAACA+AGG | + | chr5_4:12039061-12039080 | None:intergenic | 40.0% | |
| ACCCTTCAACCCAAACCAAA+AGG | - | chr5_4:12036149-12036168 | Msa0837930:three_prime_UTR | 45.0% | |
| !!! | GACCTTTTGGTTTGGGTTGA+AGG | + | chr5_4:12036154-12036173 | None:intergenic | 45.0% |
| !! | GGATTTTGAAGGAGTTTGGG+GGG | + | chr5_4:12036176-12036195 | None:intergenic | 45.0% |
| !! | AGTTTTCTGTGCTGCTGATG+AGG | - | chr5_4:12036514-12036533 | Msa0837930:intron | 45.0% |
| GCTAGTAGACATGTTAGGGT+TGG | - | chr5_4:12037068-12037087 | Msa0837930:CDS | 45.0% | |
| !! | GTTGGTGGTAAAAGAACGCA+TGG | - | chr5_4:12037295-12037314 | Msa0837930:CDS | 45.0% |
| GCATTACTAGGTTTATCGCC+TGG | + | chr5_4:12037679-12037698 | None:intergenic | 45.0% | |
| ACCTAGTAATGCAGACAACC+CGG | - | chr5_4:12037687-12037706 | Msa0837930:intron | 45.0% | |
| !! | AACGTATTGGCTGTTGCTAC+TGG | - | chr5_4:12038034-12038053 | Msa0837930:intron | 45.0% |
| TGAGCAATCATCCACCTTGA+TGG | - | chr5_4:12038285-12038304 | Msa0837930:intron | 45.0% | |
| TAGTGGAACTGGATCCATCA+AGG | + | chr5_4:12038302-12038321 | None:intergenic | 45.0% | |
| !! | ACGTGCTTTGGAACGTGTAA+TGG | + | chr5_4:12038638-12038657 | None:intergenic | 45.0% |
| ATTCATTGAAAGGGGGTCAG+AGG | + | chr5_4:12038889-12038908 | None:intergenic | 45.0% | |
| !!! | TTGGGGGGACCTTTTGGTTT+GGG | + | chr5_4:12036161-12036180 | None:intergenic | 50.0% |
| !! | TTTGGGGGGACCTTTTGGTT+TGG | + | chr5_4:12036162-12036181 | None:intergenic | 50.0% |
| CTGTCGTGCTTGTGATGAGA+AGG | - | chr5_4:12036544-12036563 | Msa0837930:intron | 50.0% | |
| TTCTCACATATGTCGCACCG+CGG | + | chr5_4:12037116-12037135 | None:intergenic | 50.0% | |
| GACATATGTGAGAATGCCCC+TGG | - | chr5_4:12037122-12037141 | Msa0837930:intron | 50.0% | |
| GTGACTGCCTCACACATTCA+AGG | + | chr5_4:12037410-12037429 | None:intergenic | 50.0% | |
| GATCTAGAGGTTGTGAAGCC+GGG | + | chr5_4:12037708-12037727 | None:intergenic | 50.0% | |
| GGATCTAGAGGTTGTGAAGC+CGG | + | chr5_4:12037709-12037728 | None:intergenic | 50.0% | |
| GCTTCACAACCTCTAGATCC+AGG | - | chr5_4:12037709-12037728 | Msa0837930:intron | 50.0% | |
| TGGAACTGGATCCATCAAGG+TGG | + | chr5_4:12038299-12038318 | None:intergenic | 50.0% | |
| CAGCCATAGGTTGTGCTACA+AGG | - | chr5_4:12038711-12038730 | Msa0837930:intron | 50.0% | |
| CTGCCTTGTAGCACAACCTA+TGG | + | chr5_4:12038717-12038736 | None:intergenic | 50.0% | |
| CAACGACAGAAACAAGGCAG+CGG | + | chr5_4:12039055-12039074 | None:intergenic | 50.0% | |
| ! | AGGAGTTTGGGGGGACCTTT+TGG | + | chr5_4:12036167-12036186 | None:intergenic | 55.0% |
| GCCGGGTTGTCTGCATTACT+AGG | + | chr5_4:12037691-12037710 | None:intergenic | 55.0% | |
| !! | GGTTCTGAAGTTGGAACCGG+AGG | + | chr5_4:12037805-12037824 | None:intergenic | 55.0% |
| TGTGCTCCCCCATGACATAG+AGG | - | chr5_4:12038954-12038973 | Msa0837930:five_prime_UTR | 55.0% | |
| CAAGTCCGAGTGACGTGCCG+CGG | - | chr5_4:12037096-12037115 | Msa0837930:intron | 65.0% | |
| TCGCACCGCGGCACGTCACT+CGG | + | chr5_4:12037104-12037123 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 12036004 | 12039088 | 12036004 | ID=Msa0837930;Name=Msa0837930 |
| chr5_4 | mRNA | 12036004 | 12039088 | 12036004 | ID=Msa0837930-mRNA-1;Parent=Msa0837930;Name=Msa0837930-mRNA-1;_AED=0.15;_eAED=0.15;_QI=323|0.5|0.71|0.85|0.66|0.42|7|247|226 |
| chr5_4 | exon | 12036004 | 12036378 | 12036004 | ID=Msa0837930-mRNA-1:exon:5342;Parent=Msa0837930-mRNA-1 |
| chr5_4 | exon | 12037037 | 12037091 | 12037037 | ID=Msa0837930-mRNA-1:exon:5341;Parent=Msa0837930-mRNA-1 |
| chr5_4 | exon | 12037174 | 12037419 | 12037174 | ID=Msa0837930-mRNA-1:exon:5340;Parent=Msa0837930-mRNA-1 |
| chr5_4 | exon | 12037798 | 12037859 | 12037798 | ID=Msa0837930-mRNA-1:exon:5339;Parent=Msa0837930-mRNA-1 |
| chr5_4 | exon | 12037949 | 12038045 | 12037949 | ID=Msa0837930-mRNA-1:exon:5338;Parent=Msa0837930-mRNA-1 |
| chr5_4 | exon | 12038527 | 12038643 | 12038527 | ID=Msa0837930-mRNA-1:exon:5337;Parent=Msa0837930-mRNA-1 |
| chr5_4 | exon | 12038790 | 12039088 | 12038790 | ID=Msa0837930-mRNA-1:exon:5336;Parent=Msa0837930-mRNA-1 |
| chr5_4 | five_prime_UTR | 12038790 | 12039088 | 12038790 | ID=Msa0837930-mRNA-1:five_prime_utr;Parent=Msa0837930-mRNA-1 |
| chr5_4 | five_prime_UTR | 12038620 | 12038643 | 12038620 | ID=Msa0837930-mRNA-1:five_prime_utr;Parent=Msa0837930-mRNA-1 |
| chr5_4 | CDS | 12038527 | 12038619 | 12038527 | ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1 |
| chr5_4 | CDS | 12037949 | 12038045 | 12037949 | ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1 |
| chr5_4 | CDS | 12037798 | 12037859 | 12037798 | ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1 |
| chr5_4 | CDS | 12037174 | 12037419 | 12037174 | ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1 |
| chr5_4 | CDS | 12037037 | 12037091 | 12037037 | ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1 |
| chr5_4 | CDS | 12036251 | 12036378 | 12036251 | ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1 |
| chr5_4 | three_prime_UTR | 12036004 | 12036250 | 12036004 | ID=Msa0837930-mRNA-1:three_prime_utr;Parent=Msa0837930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
