AlfalfaGEDB | Msa0837930

M. sativa cultivar zhongmu-4 / Msa0837930

KEGG: -
GO: -
PFAM: PF00643.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837930	XP_013453547.1	89.730	185	1	1	1	167	1	185	1.87e-115	337

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837930	sp\|C0SVM5\|BBX19_ARATH	57.831	166	58	4	1	165	1	155	1.26e-56	181

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837930	A0A072UCQ4	89.730	185	1	1	1	167	1	185	8.95e-116	337

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TFs/TRs:

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Gene ID	Type	Classification
Msa0837930	TF	DBB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0140630	Msa0837930	-0.806685	7.296602e-50	-8.615850e-47
Msa0350070	Msa0837930	0.805983	1.025567e-49	-8.615850e-47
Msa0355140	Msa0837930	-0.833727	4.515790e-56	-8.615850e-47
Msa0381500	Msa0837930	-0.821074	4.898452e-53	-8.615850e-47
Msa0402210	Msa0837930	-0.840831	6.859409e-58	-8.615850e-47
Msa0420790	Msa0837930	-0.836989	6.771942e-57	-8.615850e-47
Msa0423130	Msa0837930	0.814376	1.589863e-51	-8.615850e-47
Msa0435980	Msa0837930	0.823263	1.521904e-53	-8.615850e-47
Msa0438470	Msa0837930	-0.807137	5.852920e-50	-8.615850e-47
Msa0448980	Msa0837930	0.825006	5.930342e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837930	MtrunA17_Chr5g0405151	90.217	184	0	1	1	166	1	184	9.96e-119	335
Msa0837930	MtrunA17_Chr2g0314671	55.294	85	37	1	1	84	1	85	1.11e-24	99.0
Msa0837930	MtrunA17_Chr2g0329511	49.462	93	46	1	1	92	1	93	1.55e-23	94.7
Msa0837930	MtrunA17_Chr4g0033641	48.387	93	47	1	1	92	1	93	1.40e-21	89.4
Msa0837930	MtrunA17_Chr3g0145061	44.186	86	46	1	1	84	1	86	2.40e-21	88.6
Msa0837930	MtrunA17_Chr3g0142221	47.126	87	43	1	1	84	1	87	1.55e-20	86.3
Msa0837930	MtrunA17_Chr4g0035651	44.186	86	46	1	1	84	1	86	3.42e-20	85.5
Msa0837930	MtrunA17_Chr3g0136701	51.852	81	31	1	4	84	5	77	3.98e-20	86.7
Msa0837930	MtrunA17_Chr1g0155811	47.674	86	43	1	1	84	1	86	3.24e-19	83.6
Msa0837930	MtrunA17_Chr1g0150471	46.914	81	35	1	4	84	5	77	3.89e-18	81.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837930	AT4G38960.1	57.831	166	58	4	1	165	1	155	1.28e-57	181
Msa0837930	AT4G38960.6	57.831	166	58	4	1	165	1	155	1.28e-57	181
Msa0837930	AT2G21320.1	52.717	184	42	4	1	166	1	157	4.70e-54	171
Msa0837930	AT4G38960.3	45.933	209	58	5	1	165	1	198	1.21e-49	162
Msa0837930	AT4G38960.4	47.857	140	61	4	34	172	1	129	4.30e-36	125
Msa0837930	AT4G38960.5	50.376	133	54	4	34	165	1	122	2.56e-34	120
Msa0837930	AT4G38960.2	50.376	133	54	4	34	165	1	122	2.56e-34	120
Msa0837930	AT1G78600.1	55.294	85	37	1	1	84	1	85	5.06e-26	102
Msa0837930	AT1G78600.2	55.294	85	37	1	1	84	1	85	7.05e-26	102
Msa0837930	AT1G06040.2	48.387	93	47	1	1	92	1	93	1.26e-21	88.2

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Find 62 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACACTATTCATTGAAAG+GGG	0.575642	5_4:+12036176	None:intergenic
AACGTATTGGCTGTTGCTAC+TGG	0.479764	5_4:-12037036	Msa0837930:intron
AACTTTCTTACAAACCCACA+TGG	0.572929	5_4:-12038795	Msa0837930:five_prime_UTR
AAGAAGTATCCTCTATGTCA+TGG	0.518988	5_4:+12036107	None:intergenic
AAGATGGAGGTTGTTGATGA+TGG	0.460545	5_4:+12038865	None:intergenic
AAGTATCCTCTATGTCATGG+GGG	0.741548	5_4:+12036110	None:intergenic
ACAAAATCATAGGATGCCTC+CGG	0.578363	5_4:-12037284	Msa0837930:CDS
ACACACTATTCATTGAAAGG+GGG	0.688107	5_4:+12036177	None:intergenic
ACCCTTCAACCCAAACCAAA+AGG	0.499384	5_4:-12038921	Msa0837930:five_prime_UTR
ACCTAGTAATGCAGACAACC+CGG	0.558690	5_4:-12037383	Msa0837930:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAATATGAAAGAAGAGAG+AGG	+	chr5_4:12036053-12036072	None:intergenic	30.0%
TTTGAGAAGTGAAAAAGCTT+TGG	+	chr5_4:12036111-12036130	None:intergenic	30.0%
TTGAATGAGTCCATTTATGT+TGG	-	chr5_4:12036723-12036742	Msa0837930:intron	30.0%
GATTAGGTTAAAGATTGGAT+TGG	-	chr5_4:12036745-12036764	Msa0837930:intron	30.0%
CTTATAAGGTCAAACTCTTA+CGG	+	chr5_4:12036871-12036890	None:intergenic	30.0%
AAAGAAGAAACTTCTTACCA+GGG	+	chr5_4:12037142-12037161	None:intergenic	30.0%
AAAAGAAGAAACTTCTTACC+AGG	+	chr5_4:12037143-12037162	None:intergenic	30.0%
CATATCACATTGCAAACAAA+GGG	+	chr5_4:12037266-12037285	None:intergenic	30.0%
TCATATCACATTGCAAACAA+AGG	+	chr5_4:12037267-12037286	None:intergenic	30.0%
TGTGATATGATAGTTCATGT+TGG	-	chr5_4:12037277-12037296	Msa0837930:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	12036004	12039088	12036004	ID=Msa0837930;Name=Msa0837930
chr5_4	mRNA	12036004	12039088	12036004	ID=Msa0837930-mRNA-1;Parent=Msa0837930;Name=Msa0837930-mRNA-1;_AED=0.15;_eAED=0.15;_QI=323\|0.5\|0.71\|0.85\|0.66\|0.42\|7\|247\|226
chr5_4	exon	12036004	12036378	12036004	ID=Msa0837930-mRNA-1:exon:5342;Parent=Msa0837930-mRNA-1
chr5_4	exon	12037037	12037091	12037037	ID=Msa0837930-mRNA-1:exon:5341;Parent=Msa0837930-mRNA-1
chr5_4	exon	12037174	12037419	12037174	ID=Msa0837930-mRNA-1:exon:5340;Parent=Msa0837930-mRNA-1
chr5_4	exon	12037798	12037859	12037798	ID=Msa0837930-mRNA-1:exon:5339;Parent=Msa0837930-mRNA-1
chr5_4	exon	12037949	12038045	12037949	ID=Msa0837930-mRNA-1:exon:5338;Parent=Msa0837930-mRNA-1
chr5_4	exon	12038527	12038643	12038527	ID=Msa0837930-mRNA-1:exon:5337;Parent=Msa0837930-mRNA-1
chr5_4	exon	12038790	12039088	12038790	ID=Msa0837930-mRNA-1:exon:5336;Parent=Msa0837930-mRNA-1
chr5_4	five_prime_UTR	12038790	12039088	12038790	ID=Msa0837930-mRNA-1:five_prime_utr;Parent=Msa0837930-mRNA-1
chr5_4	five_prime_UTR	12038620	12038643	12038620	ID=Msa0837930-mRNA-1:five_prime_utr;Parent=Msa0837930-mRNA-1
chr5_4	CDS	12038527	12038619	12038527	ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1
chr5_4	CDS	12037949	12038045	12037949	ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1
chr5_4	CDS	12037798	12037859	12037798	ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1
chr5_4	CDS	12037174	12037419	12037174	ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1
chr5_4	CDS	12037037	12037091	12037037	ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1
chr5_4	CDS	12036251	12036378	12036251	ID=Msa0837930-mRNA-1:cds;Parent=Msa0837930-mRNA-1
chr5_4	three_prime_UTR	12036004	12036250	12036004	ID=Msa0837930-mRNA-1:three_prime_utr;Parent=Msa0837930-mRNA-1

Gene Sequence

>Msa0837930

ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCTGCCGCTATAGTTTTCTGTGCTGCTGATGAGGCTGCACTCTGTCGTGCTTGTGATGAGAAGGTTCATATGTGCAATAAGTTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCGAGTGACGTGCCGCGGTGCGACATATGTGAGAATGCCCCTGCTTTCTTCTATTGCGAAACAGATGGAAGTTCCCTTTGTTTGCAATGTGATATGATAGTTCATTTTCCAGGCGATAAACCTAGTAATGCAGACAACCCGGCTTCACAACCTCTAGATCCAGGTGATATTAAAAGAGGACAAAGTCCACTTCCTAAACAAAAAATGGGAGAGAAGCAACAAAATCATAGGATGCCTCCGGTTCCAACTTCAGAACCTAATGCTGATGGGAATTCTAAGATGGAAAATAAATTGATTGATTTGAACATGAAGCCTAACAACAGAATACATGAACATGCATCAAATAATCAGATACTGCAAAATATACTTAGAGTGAAATTGATAAACGTATTGGCTGTTGCTACTGCCATAGGTTGTGCTACAAGGCAGTCTGATTCCAACAAGATCTTACATCAGAAATCTACCATAGATCGTGCTACAAAGCAATGCGAGTCTATAGAATTTGTTCTCTCATGTAGGAATTTAGTTTTTTAG

Protein sequence

>Msa0837930

MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHFPGDKPSNADNPASQPLDPGDIKRGQSPLPKQKMGEKQQNHRMPPVPTSEPNADGNSKMENKLIDLNMKPNNRIHEHASNNQILQNILRVKLINVLAVATAIGCATRQSDSNKILHQKSTIDRATKQCESIEFVLSCRNLVF*