Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742650 | XP_024639599.1 | 97.297 | 148 | 4 | 0 | 1 | 148 | 1 | 148 | 5.59e-99 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742650 | A0A396HWT5 | 97.297 | 148 | 4 | 0 | 1 | 148 | 1 | 148 | 2.67e-99 | 291 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616510 | Msa0742650 | 0.858418 | 8.352297e-63 | -8.615850e-47 |
| Msa0651550 | Msa0742650 | 0.801296 | 9.628613e-49 | -8.615850e-47 |
| Msa0699840 | Msa0742650 | 0.847355 | 1.218350e-59 | -8.615850e-47 |
| Msa0734260 | Msa0742650 | 0.803542 | 3.316373e-49 | -8.615850e-47 |
| Msa0740100 | Msa0742650 | 0.807824 | 4.185637e-50 | -8.615850e-47 |
| Msa0742650 | Msa0779820 | 0.830759 | 2.450334e-55 | -8.615850e-47 |
| Msa0742650 | Msa0782750 | 0.805133 | 1.546458e-49 | -8.615850e-47 |
| Msa0742650 | Msa0820390 | 0.824683 | 7.066867e-54 | -8.615850e-47 |
| Msa0742650 | Msa0823790 | 0.851198 | 1.037463e-60 | -8.615850e-47 |
| Msa0742650 | Msa0862790 | 0.875926 | 2.095573e-68 | -8.615850e-47 |
| Msa0742650 | Msa1020630 | 0.816324 | 5.863783e-52 | -8.615850e-47 |
| Msa0742650 | Msa1113800 | 0.817787 | 2.750956e-52 | -8.615850e-47 |
| Msa0742650 | Msa1118600 | 0.809028 | 2.316652e-50 | -8.615850e-47 |
| Msa0742650 | Msa1160500 | 0.823081 | 1.678469e-53 | -8.615850e-47 |
| Msa0742650 | Msa1184330 | 0.818962 | 1.490603e-52 | -8.615850e-47 |
| Msa0742650 | Msa1227940 | 0.814020 | 1.905932e-51 | -8.615850e-47 |
| Msa0742650 | Msa1271040 | 0.816574 | 5.155234e-52 | -8.615850e-47 |
| Msa0742650 | Msa1284120 | 0.824444 | 8.046807e-54 | -8.615850e-47 |
| Msa0742650 | Msa1341890 | 0.858313 | 8.978036e-63 | -8.615850e-47 |
| Msa0164400 | Msa0742650 | 0.803084 | 4.126707e-49 | -8.615850e-47 |
| Msa0194820 | Msa0742650 | 0.809242 | 2.084822e-50 | -8.615850e-47 |
| Msa0194840 | Msa0742650 | 0.808782 | 2.614471e-50 | -8.615850e-47 |
| Msa0388770 | Msa0742650 | 0.820488 | 6.678455e-53 | -8.615850e-47 |
| Msa0393150 | Msa0742650 | 0.809393 | 1.934615e-50 | -8.615850e-47 |
| Msa0393340 | Msa0742650 | 0.813571 | 2.392938e-51 | -8.615850e-47 |
| Msa0441290 | Msa0742650 | 0.827116 | 1.868815e-54 | -8.615850e-47 |
| Msa0562620 | Msa0742650 | 0.829516 | 4.926757e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742650 | MtrunA17_Chr5g0444551 | 97.297 | 148 | 4 | 0 | 1 | 148 | 1 | 148 | 5.14e-103 | 291 |
| Msa0742650 | MtrunA17_Chr5g0444571 | 96.809 | 94 | 3 | 0 | 1 | 94 | 1 | 94 | 5.85e-60 | 180 |
| Msa0742650 | MtrunA17_Chr4g0024941 | 48.936 | 141 | 72 | 0 | 1 | 141 | 1 | 141 | 2.62e-45 | 147 |
| Msa0742650 | MtrunA17_Chr2g0288831 | 50.694 | 144 | 70 | 1 | 1 | 143 | 1 | 144 | 3.85e-44 | 144 |
| Msa0742650 | MtrunA17_Chr2g0322421 | 47.287 | 129 | 67 | 1 | 1 | 128 | 1 | 129 | 3.19e-32 | 114 |
| Msa0742650 | MtrunA17_Chr7g0235621 | 40.458 | 131 | 77 | 1 | 1 | 130 | 1 | 131 | 5.90e-30 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742650 | AT5G42570.1 | 51.064 | 141 | 69 | 0 | 1 | 141 | 1 | 141 | 1.18e-45 | 148 |
| Msa0742650 | AT1G11905.1 | 50.355 | 141 | 70 | 0 | 1 | 141 | 1 | 141 | 7.80e-44 | 144 |
| Msa0742650 | AT3G20450.1 | 46.512 | 129 | 68 | 1 | 1 | 128 | 5 | 133 | 1.17e-37 | 125 |
| Msa0742650 | AT1G11905.2 | 43.972 | 141 | 78 | 1 | 1 | 141 | 1 | 140 | 7.21e-34 | 118 |
| Msa0742650 | AT5G48660.1 | 42.969 | 128 | 72 | 1 | 1 | 127 | 1 | 128 | 3.64e-30 | 108 |
| Msa0742650 | AT3G07190.1 | 44.531 | 128 | 70 | 1 | 1 | 127 | 1 | 128 | 1.33e-29 | 107 |
| Msa0742650 | AT5G48660.2 | 48.077 | 52 | 27 | 0 | 76 | 127 | 1 | 52 | 2.98e-11 | 58.2 |
Find 32 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACATCCATTGAACGTTTA+TGG | 0.094726 | 5_1:-62611008 | None:intergenic |
| ACCACTGTATTTGTTGTATT+TGG | 0.123258 | 5_1:+62610958 | Msa0742650:CDS |
| TCCTCTATCTCTCTTCTCTT+TGG | 0.214919 | 5_1:-62611601 | None:intergenic |
| ACAGGTTTCTCTCTATTCTT+TGG | 0.261214 | 5_1:+62611481 | Msa0742650:intron |
| AAATCCAATACGAAAATTAA+TGG | 0.270501 | 5_1:+62610876 | Msa0742650:CDS |
| TTCTCGATTTGGGAGTTTCT+TGG | 0.274478 | 5_1:-62611752 | None:intergenic |
| TTGATATGCAATTCTCGATT+TGG | 0.291370 | 5_1:-62611763 | None:intergenic |
| TCTCTTAGAAGCATCTCTTA+TGG | 0.322946 | 5_1:+62611071 | Msa0742650:CDS |
| AGAGGAAACTGAGAAGAAAA+AGG | 0.332303 | 5_1:+62611618 | Msa0742650:CDS |
| TACAAAATAAGAGTTTGATT+TGG | 0.335189 | 5_1:+62610729 | Msa0742650:five_prime_UTR |
| TGATATGCAATTCTCGATTT+GGG | 0.354851 | 5_1:-62611762 | None:intergenic |
| CTCTTAGAAGCATCTCTTAT+GGG | 0.365951 | 5_1:+62611072 | Msa0742650:CDS |
| GTACACATACAGACATGTTT+AGG | 0.407202 | 5_1:-62611679 | None:intergenic |
| TCTATCTCTCTTCTCTTTGG+AGG | 0.415834 | 5_1:-62611598 | None:intergenic |
| TCCAACAGAGGAGGTTCTAA+TGG | 0.420935 | 5_1:+62611041 | Msa0742650:CDS |
| AAAATAAGAGTTTGATTTGG+AGG | 0.430028 | 5_1:+62610732 | Msa0742650:five_prime_UTR |
| CAAAATCCATAAACGTTCAA+TGG | 0.441548 | 5_1:+62611002 | Msa0742650:CDS |
| TCCAAAGAGAAGAGAGATAG+AGG | 0.454256 | 5_1:+62611600 | Msa0742650:CDS |
| GACCCCTTCCACGCTTCAAA+AGG | 0.463134 | 5_1:-62610912 | None:intergenic |
| GCCATTAGAACCTCCTCTGT+TGG | 0.483298 | 5_1:-62611042 | None:intergenic |
| TACTTGAATGTTGGTTTCGA+TGG | 0.490667 | 5_1:-62610777 | None:intergenic |
| CATAAACGTTCAATGGATGT+TGG | 0.531550 | 5_1:+62611009 | Msa0742650:CDS |
| TTGTAGAACTACTTGAATGT+TGG | 0.532246 | 5_1:-62610786 | None:intergenic |
| TCTTTGGATTGATGATCGAT+AGG | 0.543666 | 5_1:+62611497 | Msa0742650:CDS |
| ACGTTCAATGGATGTTGGCA+TGG | 0.548399 | 5_1:+62611014 | Msa0742650:CDS |
| AATACGAAAATTAATGGTGA+AGG | 0.560690 | 5_1:+62610882 | Msa0742650:CDS |
| TTTGAGTATCGTATATATGG+TGG | 0.571975 | 5_1:-62610983 | None:intergenic |
| TTAAAGAGATCACTTCATTG+AGG | 0.591642 | 5_1:+62611533 | Msa0742650:CDS |
| CACTTCATTGAGGAAGAATG+TGG | 0.608657 | 5_1:+62611543 | Msa0742650:CDS |
| CATGGTTAATCCAACAGAGG+AGG | 0.638279 | 5_1:+62611032 | Msa0742650:CDS |
| GCCAAATACAACAAATACAG+TGG | 0.645246 | 5_1:-62610959 | None:intergenic |
| TGGCATGGTTAATCCAACAG+AGG | 0.731698 | 5_1:+62611029 | Msa0742650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATTATATTATCTAC+TGG | + | chr5_1:62611868-62611887 | Msa0742650:three_prime_UTR | 10.0% |
| !!! | TAATTTAGATTGTTTTTCAA+AGG | + | chr5_1:62611207-62611226 | Msa0742650:intron | 15.0% |
| !!! | TAAAAAAACGTTTGATAATA+TGG | - | chr5_1:62611799-62611818 | None:intergenic | 15.0% |
| !!! | TAATTTAGATTGTTTTTCAA+AGG | + | chr5_1:62611207-62611226 | Msa0742650:intron | 15.0% |
| !!! | TAAAAAAACGTTTGATAATA+TGG | - | chr5_1:62611799-62611818 | None:intergenic | 15.0% |
| !! | TACAAAATAAGAGTTTGATT+TGG | + | chr5_1:62610729-62610748 | Msa0742650:five_prime_UTR | 20.0% |
| !! | AAATCCAATACGAAAATTAA+TGG | + | chr5_1:62610876-62610895 | Msa0742650:CDS | 20.0% |
| !!! | GCTATTGTTTTTATGATTAA+TGG | - | chr5_1:62610937-62610956 | None:intergenic | 20.0% |
| !!! | CTAGTATTGAAAGAAAAATA+AGG | - | chr5_1:62611118-62611137 | None:intergenic | 20.0% |
| !! | ATTAAAACTAAGACATCAAA+TGG | + | chr5_1:62611361-62611380 | Msa0742650:intron | 20.0% |
| !! | TTTCCATATCCTATAAAATA+TGG | + | chr5_1:62611449-62611468 | Msa0742650:intron | 20.0% |
| !! | TTCCATATCCTATAAAATAT+GGG | + | chr5_1:62611450-62611469 | Msa0742650:intron | 20.0% |
| !! | GAAGAAAAAGGATAATTAAA+TGG | + | chr5_1:62611630-62611649 | Msa0742650:exon | 20.0% |
| !! | TACAAAATAAGAGTTTGATT+TGG | + | chr5_1:62610729-62610748 | Msa0742650:five_prime_UTR | 20.0% |
| !! | AAATCCAATACGAAAATTAA+TGG | + | chr5_1:62610876-62610895 | Msa0742650:CDS | 20.0% |
| !!! | GCTATTGTTTTTATGATTAA+TGG | - | chr5_1:62610937-62610956 | None:intergenic | 20.0% |
| !!! | CTAGTATTGAAAGAAAAATA+AGG | - | chr5_1:62611118-62611137 | None:intergenic | 20.0% |
| !! | ATTAAAACTAAGACATCAAA+TGG | + | chr5_1:62611361-62611380 | Msa0742650:intron | 20.0% |
| !! | TTTCCATATCCTATAAAATA+TGG | + | chr5_1:62611449-62611468 | Msa0742650:intron | 20.0% |
| !! | TTCCATATCCTATAAAATAT+GGG | + | chr5_1:62611450-62611469 | Msa0742650:intron | 20.0% |
| !! | GAAGAAAAAGGATAATTAAA+TGG | + | chr5_1:62611630-62611649 | Msa0742650:exon | 20.0% |
| !!! | AAAATAAGAGTTTGATTTGG+AGG | + | chr5_1:62610732-62610751 | Msa0742650:five_prime_UTR | 25.0% |
| !! | TTCACCATTAATTTTCGTAT+TGG | - | chr5_1:62610883-62610902 | None:intergenic | 25.0% |
| ! | AATACGAAAATTAATGGTGA+AGG | + | chr5_1:62610882-62610901 | Msa0742650:CDS | 25.0% |
| !!! | GATTTTGAGTATCGTATATA+TGG | - | chr5_1:62610989-62611008 | None:intergenic | 25.0% |
| !!! | TTGCATGAATATGTCATTTT+AGG | - | chr5_1:62611332-62611351 | None:intergenic | 25.0% |
| !! | TTCCCATATTTTATAGGATA+TGG | - | chr5_1:62611455-62611474 | None:intergenic | 25.0% |
| !! | GCAATATTCCCATATTTTAT+AGG | - | chr5_1:62611461-62611480 | None:intergenic | 25.0% |
| !!! | AAAATAAGAGTTTGATTTGG+AGG | + | chr5_1:62610732-62610751 | Msa0742650:five_prime_UTR | 25.0% |
| !! | TTCACCATTAATTTTCGTAT+TGG | - | chr5_1:62610883-62610902 | None:intergenic | 25.0% |
| ! | AATACGAAAATTAATGGTGA+AGG | + | chr5_1:62610882-62610901 | Msa0742650:CDS | 25.0% |
| !!! | GATTTTGAGTATCGTATATA+TGG | - | chr5_1:62610989-62611008 | None:intergenic | 25.0% |
| !!! | TTGCATGAATATGTCATTTT+AGG | - | chr5_1:62611332-62611351 | None:intergenic | 25.0% |
| !! | TTCCCATATTTTATAGGATA+TGG | - | chr5_1:62611455-62611474 | None:intergenic | 25.0% |
| !! | GCAATATTCCCATATTTTAT+AGG | - | chr5_1:62611461-62611480 | None:intergenic | 25.0% |
| TTGTAGAACTACTTGAATGT+TGG | - | chr5_1:62610789-62610808 | None:intergenic | 30.0% | |
| !! | ACCACTGTATTTGTTGTATT+TGG | + | chr5_1:62610958-62610977 | Msa0742650:CDS | 30.0% |
| ! | TTTGAGTATCGTATATATGG+TGG | - | chr5_1:62610986-62611005 | None:intergenic | 30.0% |
| CAAAATCCATAAACGTTCAA+TGG | + | chr5_1:62611002-62611021 | Msa0742650:CDS | 30.0% | |
| AAAATATGGGAATATTGCAC+AGG | + | chr5_1:62611463-62611482 | Msa0742650:intron | 30.0% | |
| TTAAAGAGATCACTTCATTG+AGG | + | chr5_1:62611533-62611552 | Msa0742650:CDS | 30.0% | |
| TGATATGCAATTCTCGATTT+GGG | - | chr5_1:62611765-62611784 | None:intergenic | 30.0% | |
| TTGATATGCAATTCTCGATT+TGG | - | chr5_1:62611766-62611785 | None:intergenic | 30.0% | |
| TTGTAGAACTACTTGAATGT+TGG | - | chr5_1:62610789-62610808 | None:intergenic | 30.0% | |
| !! | ACCACTGTATTTGTTGTATT+TGG | + | chr5_1:62610958-62610977 | Msa0742650:CDS | 30.0% |
| ! | TTTGAGTATCGTATATATGG+TGG | - | chr5_1:62610986-62611005 | None:intergenic | 30.0% |
| CAAAATCCATAAACGTTCAA+TGG | + | chr5_1:62611002-62611021 | Msa0742650:CDS | 30.0% | |
| AAAATATGGGAATATTGCAC+AGG | + | chr5_1:62611463-62611482 | Msa0742650:intron | 30.0% | |
| TTAAAGAGATCACTTCATTG+AGG | + | chr5_1:62611533-62611552 | Msa0742650:CDS | 30.0% | |
| TGATATGCAATTCTCGATTT+GGG | - | chr5_1:62611765-62611784 | None:intergenic | 30.0% | |
| TTGATATGCAATTCTCGATT+TGG | - | chr5_1:62611766-62611785 | None:intergenic | 30.0% | |
| !! | TACTTGAATGTTGGTTTCGA+TGG | - | chr5_1:62610780-62610799 | None:intergenic | 35.0% |
| GCCAAATACAACAAATACAG+TGG | - | chr5_1:62610962-62610981 | None:intergenic | 35.0% | |
| CAACATCCATTGAACGTTTA+TGG | - | chr5_1:62611011-62611030 | None:intergenic | 35.0% | |
| CATAAACGTTCAATGGATGT+TGG | + | chr5_1:62611009-62611028 | Msa0742650:CDS | 35.0% | |
| !! | TCTCTTAGAAGCATCTCTTA+TGG | + | chr5_1:62611071-62611090 | Msa0742650:CDS | 35.0% |
| !! | CTCTTAGAAGCATCTCTTAT+GGG | + | chr5_1:62611072-62611091 | Msa0742650:CDS | 35.0% |
| CACAACAGATGCATTTATCA+TGG | + | chr5_1:62611154-62611173 | Msa0742650:intron | 35.0% | |
| ACAGGTTTCTCTCTATTCTT+TGG | + | chr5_1:62611481-62611500 | Msa0742650:intron | 35.0% | |
| ! | TCTTTGGATTGATGATCGAT+AGG | + | chr5_1:62611497-62611516 | Msa0742650:CDS | 35.0% |
| AGAGGAAACTGAGAAGAAAA+AGG | + | chr5_1:62611618-62611637 | Msa0742650:CDS | 35.0% | |
| GTACACATACAGACATGTTT+AGG | - | chr5_1:62611682-62611701 | None:intergenic | 35.0% | |
| !! | TACTTGAATGTTGGTTTCGA+TGG | - | chr5_1:62610780-62610799 | None:intergenic | 35.0% |
| GCCAAATACAACAAATACAG+TGG | - | chr5_1:62610962-62610981 | None:intergenic | 35.0% | |
| CAACATCCATTGAACGTTTA+TGG | - | chr5_1:62611011-62611030 | None:intergenic | 35.0% | |
| CATAAACGTTCAATGGATGT+TGG | + | chr5_1:62611009-62611028 | Msa0742650:CDS | 35.0% | |
| !! | TCTCTTAGAAGCATCTCTTA+TGG | + | chr5_1:62611071-62611090 | Msa0742650:CDS | 35.0% |
| !! | CTCTTAGAAGCATCTCTTAT+GGG | + | chr5_1:62611072-62611091 | Msa0742650:CDS | 35.0% |
| CACAACAGATGCATTTATCA+TGG | + | chr5_1:62611154-62611173 | Msa0742650:intron | 35.0% | |
| ACAGGTTTCTCTCTATTCTT+TGG | + | chr5_1:62611481-62611500 | Msa0742650:intron | 35.0% | |
| ! | TCTTTGGATTGATGATCGAT+AGG | + | chr5_1:62611497-62611516 | Msa0742650:CDS | 35.0% |
| AGAGGAAACTGAGAAGAAAA+AGG | + | chr5_1:62611618-62611637 | Msa0742650:CDS | 35.0% | |
| GTACACATACAGACATGTTT+AGG | - | chr5_1:62611682-62611701 | None:intergenic | 35.0% | |
| CACTTCATTGAGGAAGAATG+TGG | + | chr5_1:62611543-62611562 | Msa0742650:CDS | 40.0% | |
| TCTATCTCTCTTCTCTTTGG+AGG | - | chr5_1:62611601-62611620 | None:intergenic | 40.0% | |
| TCCAAAGAGAAGAGAGATAG+AGG | + | chr5_1:62611600-62611619 | Msa0742650:CDS | 40.0% | |
| TCCTCTATCTCTCTTCTCTT+TGG | - | chr5_1:62611604-62611623 | None:intergenic | 40.0% | |
| !! | TTCTCGATTTGGGAGTTTCT+TGG | - | chr5_1:62611755-62611774 | None:intergenic | 40.0% |
| CACTTCATTGAGGAAGAATG+TGG | + | chr5_1:62611543-62611562 | Msa0742650:CDS | 40.0% | |
| TCTATCTCTCTTCTCTTTGG+AGG | - | chr5_1:62611601-62611620 | None:intergenic | 40.0% | |
| TCCAAAGAGAAGAGAGATAG+AGG | + | chr5_1:62611600-62611619 | Msa0742650:CDS | 40.0% | |
| TCCTCTATCTCTCTTCTCTT+TGG | - | chr5_1:62611604-62611623 | None:intergenic | 40.0% | |
| !! | TTCTCGATTTGGGAGTTTCT+TGG | - | chr5_1:62611755-62611774 | None:intergenic | 40.0% |
| !!! | GTGTTAGACCTTTTGAAGCG+TGG | + | chr5_1:62610904-62610923 | Msa0742650:CDS | 45.0% |
| !!! | TAGACCTTTTGAAGCGTGGA+AGG | + | chr5_1:62610908-62610927 | Msa0742650:CDS | 45.0% |
| !!! | AGACCTTTTGAAGCGTGGAA+GGG | + | chr5_1:62610909-62610928 | Msa0742650:CDS | 45.0% |
| ACGTTCAATGGATGTTGGCA+TGG | + | chr5_1:62611014-62611033 | Msa0742650:CDS | 45.0% | |
| TGGCATGGTTAATCCAACAG+AGG | + | chr5_1:62611029-62611048 | Msa0742650:CDS | 45.0% | |
| CATGGTTAATCCAACAGAGG+AGG | + | chr5_1:62611032-62611051 | Msa0742650:CDS | 45.0% | |
| ! | TCCAACAGAGGAGGTTCTAA+TGG | + | chr5_1:62611041-62611060 | Msa0742650:CDS | 45.0% |
| !!! | GTGTTAGACCTTTTGAAGCG+TGG | + | chr5_1:62610904-62610923 | Msa0742650:CDS | 45.0% |
| !!! | TAGACCTTTTGAAGCGTGGA+AGG | + | chr5_1:62610908-62610927 | Msa0742650:CDS | 45.0% |
| !!! | AGACCTTTTGAAGCGTGGAA+GGG | + | chr5_1:62610909-62610928 | Msa0742650:CDS | 45.0% |
| ACGTTCAATGGATGTTGGCA+TGG | + | chr5_1:62611014-62611033 | Msa0742650:CDS | 45.0% | |
| TGGCATGGTTAATCCAACAG+AGG | + | chr5_1:62611029-62611048 | Msa0742650:CDS | 45.0% | |
| CATGGTTAATCCAACAGAGG+AGG | + | chr5_1:62611032-62611051 | Msa0742650:CDS | 45.0% | |
| ! | TCCAACAGAGGAGGTTCTAA+TGG | + | chr5_1:62611041-62611060 | Msa0742650:CDS | 45.0% |
| !!! | GACCTTTTGAAGCGTGGAAG+GGG | + | chr5_1:62610910-62610929 | Msa0742650:CDS | 50.0% |
| GCCATTAGAACCTCCTCTGT+TGG | - | chr5_1:62611045-62611064 | None:intergenic | 50.0% | |
| !!! | GACCTTTTGAAGCGTGGAAG+GGG | + | chr5_1:62610910-62610929 | Msa0742650:CDS | 50.0% |
| GCCATTAGAACCTCCTCTGT+TGG | - | chr5_1:62611045-62611064 | None:intergenic | 50.0% | |
| GACCCCTTCCACGCTTCAAA+AGG | - | chr5_1:62610915-62610934 | None:intergenic | 55.0% | |
| GACCCCTTCCACGCTTCAAA+AGG | - | chr5_1:62610915-62610934 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 62610727 | 62611888 | 62610727 | ID=Msa0742650;Name=Msa0742650 |
| chr5_1 | mRNA | 62610727 | 62611888 | 62610727 | ID=Msa0742650-mRNA-1;Parent=Msa0742650;Name=Msa0742650-mRNA-1;_AED=0.03;_eAED=0.03;_QI=84|1|1|1|0|0.5|2|240|148 |
| chr5_1 | exon | 62610727 | 62611093 | 62610727 | ID=Msa0742650-mRNA-1:exon:18413;Parent=Msa0742650-mRNA-1 |
| chr5_1 | exon | 62611485 | 62611888 | 62611485 | ID=Msa0742650-mRNA-1:exon:18414;Parent=Msa0742650-mRNA-1 |
| chr5_1 | five_prime_UTR | 62610727 | 62610810 | 62610727 | ID=Msa0742650-mRNA-1:five_prime_utr;Parent=Msa0742650-mRNA-1 |
| chr5_1 | CDS | 62610811 | 62611093 | 62610811 | ID=Msa0742650-mRNA-1:cds;Parent=Msa0742650-mRNA-1 |
| chr5_1 | CDS | 62611485 | 62611648 | 62611485 | ID=Msa0742650-mRNA-1:cds;Parent=Msa0742650-mRNA-1 |
| chr5_1 | three_prime_UTR | 62611649 | 62611888 | 62611649 | ID=Msa0742650-mRNA-1:three_prime_utr;Parent=Msa0742650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
