Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743380 | XP_003616059.1 | 97.975 | 395 | 8 | 0 | 1 | 395 | 1 | 395 | 0.0 | 806 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743380 | sp|Q10PP8|MTP4_ORYSJ | 71.646 | 395 | 103 | 5 | 4 | 395 | 7 | 395 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743380 | G7K0W2 | 97.975 | 395 | 8 | 0 | 1 | 395 | 1 | 395 | 0.0 | 806 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074620 | Msa0743380 | 0.812925 | 3.316373e-51 | -8.615850e-47 |
| Msa0735130 | Msa0743380 | 0.806267 | 8.937038e-50 | -8.615850e-47 |
| Msa0743380 | Msa0814670 | 0.833591 | 4.882819e-56 | -8.615850e-47 |
| Msa0743380 | Msa0855270 | 0.959504 | 1.626925e-117 | -8.615850e-47 |
| Msa0743380 | Msa0896920 | 0.815292 | 9.960270e-52 | -8.615850e-47 |
| Msa0743380 | Msa1456600 | 0.801824 | 7.502175e-49 | -8.615850e-47 |
| Msa0170990 | Msa0743380 | 0.805333 | 1.404054e-49 | -8.615850e-47 |
| Msa0409490 | Msa0743380 | 0.813111 | 3.020442e-51 | -8.615850e-47 |
| Msa0589740 | Msa0743380 | 0.807940 | 3.953564e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743380 | MtrunA17_Chr5g0432881 | 97.975 | 395 | 8 | 0 | 1 | 395 | 1 | 395 | 0.0 | 806 |
| Msa0743380 | MtrunA17_Chr3g0108381 | 75.802 | 405 | 85 | 4 | 1 | 395 | 1 | 402 | 0.0 | 622 |
| Msa0743380 | MtrunA17_Chr7g0222641 | 56.098 | 328 | 139 | 3 | 65 | 387 | 69 | 396 | 2.19e-119 | 352 |
| Msa0743380 | MtrunA17_Chr8g0357061 | 54.381 | 331 | 144 | 4 | 65 | 389 | 64 | 393 | 5.34e-119 | 351 |
| Msa0743380 | MtrunA17_Chr2g0310301 | 52.601 | 346 | 152 | 5 | 53 | 387 | 46 | 390 | 2.00e-113 | 337 |
| Msa0743380 | MtrunA17_Chr3g0119281 | 50.559 | 358 | 159 | 6 | 44 | 390 | 49 | 399 | 3.35e-109 | 326 |
| Msa0743380 | MtrunA17_Chr3g0120361 | 67.442 | 43 | 14 | 0 | 142 | 184 | 1 | 43 | 1.19e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743380 | AT3G58060.2 | 66.019 | 412 | 119 | 7 | 1 | 394 | 1 | 409 | 0.0 | 531 |
| Msa0743380 | AT3G58060.1 | 66.019 | 412 | 119 | 7 | 1 | 394 | 1 | 409 | 0.0 | 531 |
| Msa0743380 | AT1G79520.3 | 56.061 | 330 | 138 | 4 | 65 | 388 | 19 | 347 | 3.37e-117 | 345 |
| Msa0743380 | AT1G79520.4 | 56.061 | 330 | 138 | 4 | 65 | 388 | 19 | 347 | 3.37e-117 | 345 |
| Msa0743380 | AT1G79520.1 | 56.061 | 330 | 138 | 4 | 65 | 388 | 72 | 400 | 1.92e-116 | 345 |
| Msa0743380 | AT1G79520.2 | 56.061 | 330 | 138 | 4 | 65 | 388 | 84 | 412 | 2.04e-116 | 345 |
| Msa0743380 | AT1G16310.1 | 52.991 | 351 | 157 | 5 | 44 | 388 | 79 | 427 | 3.79e-114 | 340 |
| Msa0743380 | AT1G16310.2 | 57.860 | 299 | 123 | 3 | 92 | 388 | 17 | 314 | 3.84e-111 | 328 |
| Msa0743380 | AT2G39450.1 | 53.963 | 328 | 146 | 3 | 65 | 387 | 63 | 390 | 7.00e-100 | 302 |
Find 67 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTCTCTGCTTGACTTCA+TGG | 0.203109 | 5_1:-63691507 | Msa0743380:CDS |
| TTCAAGTTCAAGGCCATTAT+TGG | 0.213413 | 5_1:-63692895 | Msa0743380:CDS |
| AAGAGTTCATATTATGATTC+TGG | 0.245546 | 5_1:+63692868 | None:intergenic |
| TCTAGATTTATGTGACAATT+AGG | 0.268110 | 5_1:-63691562 | Msa0743380:intron |
| AAATCTCGCTACAGGCTTTC+AGG | 0.268717 | 5_1:-63691225 | Msa0743380:intron |
| AATTATCTTTGCAGCTGTTA+TGG | 0.297100 | 5_1:-63691390 | Msa0743380:CDS |
| AGGGTATTTGTACATATTTA+TGG | 0.304407 | 5_1:+63691445 | None:intergenic |
| TGATTCTGGTTGCCCAATAA+TGG | 0.316172 | 5_1:+63692882 | None:intergenic |
| ACTGTTCGCGCTTACTCATT+TGG | 0.318381 | 5_1:-63690211 | Msa0743380:CDS |
| GGATTAGTTGCAGCTGTTCT+TGG | 0.320542 | 5_1:-63690628 | Msa0743380:CDS |
| GAATTGGTCTGGTACTGTTA+TGG | 0.332272 | 5_1:-63690542 | Msa0743380:CDS |
| GCAAGTAAAATAGCACCAAT+AGG | 0.355419 | 5_1:+63690580 | None:intergenic |
| TGTCTTATGATCAACTAGTA+TGG | 0.357403 | 5_1:-63691151 | Msa0743380:CDS |
| GTTAGCTTCTGCAGAAGTTC+AGG | 0.357908 | 5_1:+63690274 | None:intergenic |
| TTCTATGTCTTCTACATCAA+TGG | 0.358446 | 5_1:+63691736 | None:intergenic |
| CAATTTACACTATTTCGAAT+TGG | 0.367689 | 5_1:-63690558 | Msa0743380:CDS |
| TGCATTCTCAACTTTCCAAT+AGG | 0.373794 | 5_1:+63691425 | None:intergenic |
| TCAAGTTCAAGGCCATTATT+GGG | 0.376578 | 5_1:-63692894 | Msa0743380:CDS |
| TGTATTTAAGGCTAACTATC+TGG | 0.377124 | 5_1:+63689848 | None:intergenic |
| GTCAAAGAATGGACCTTATC+AGG | 0.379798 | 5_1:+63692810 | None:intergenic |
| AATATGTACAAATACCCTAT+TGG | 0.393464 | 5_1:-63691440 | Msa0743380:CDS |
| ACAAACGCTCGCTCAACTTC+CGG | 0.395612 | 5_1:+63689926 | None:intergenic |
| AATGGAATCCGACATTACTA+TGG | 0.395704 | 5_1:+63691754 | None:intergenic |
| TGCTACTCTAAAATCATTTG+AGG | 0.396619 | 5_1:-63691786 | Msa0743380:CDS |
| CTTATCCAAGCTGCCTGATA+AGG | 0.399632 | 5_1:-63692823 | Msa0743380:CDS |
| GCATTCTCAACTTTCCAATA+GGG | 0.402495 | 5_1:+63691426 | None:intergenic |
| GGCTATTGCTGCTTCAACAT+TGG | 0.406643 | 5_1:-63691528 | Msa0743380:CDS |
| CTACTAAGAACCGAGTGTTC+TGG | 0.411556 | 5_1:+63689875 | None:intergenic |
| TACACTATTTCGAATTGGTC+TGG | 0.420641 | 5_1:-63690553 | Msa0743380:CDS |
| GATAAATCTTGAGAAACTTC+CGG | 0.424918 | 5_1:-63689945 | Msa0743380:CDS |
| TACTGGTGGATTGACCCTAT+TGG | 0.428785 | 5_1:-63690595 | Msa0743380:CDS |
| TCTCTGCTTGACTTCATGGC+TGG | 0.433184 | 5_1:-63691503 | Msa0743380:CDS |
| TCATGGCTGGTGGCATACTT+TGG | 0.433940 | 5_1:-63691490 | Msa0743380:CDS |
| CAAGTAAAATAGCACCAATA+GGG | 0.443125 | 5_1:+63690581 | None:intergenic |
| TTAAAAGAAGCACATATCAT+TGG | 0.458006 | 5_1:-63689980 | Msa0743380:CDS |
| TATTATGATATTTGCAACAT+TGG | 0.463601 | 5_1:-63691120 | Msa0743380:CDS |
| AGAATGACCTTTGCTTAAGC+TGG | 0.479779 | 5_1:+63692737 | None:intergenic |
| GCAAAGATAATTATTCCTAC+TGG | 0.493299 | 5_1:+63691401 | None:intergenic |
| TGGAGGGAAATTCAAGTTCA+AGG | 0.495857 | 5_1:-63692905 | Msa0743380:CDS |
| CATTGGTGAAGCTTGCACTT+TGG | 0.500002 | 5_1:-63691103 | Msa0743380:CDS |
| CAGTGTGGAGGGTCAAAGAA+TGG | 0.500698 | 5_1:+63692799 | None:intergenic |
| GACAATTAGGACTGGATCCA+TGG | 0.512333 | 5_1:-63691549 | Msa0743380:CDS |
| CTGCTTGACTTCATGGCTGG+TGG | 0.529766 | 5_1:-63691500 | Msa0743380:CDS |
| TTTGCTTAAGCTGGTAGATG+TGG | 0.543988 | 5_1:+63692746 | None:intergenic |
| ATGGACCTTATCAGGCAGCT+TGG | 0.545275 | 5_1:+63692818 | None:intergenic |
| TCTTATGCAGTTTCACTAGT+GGG | 0.546741 | 5_1:-63690310 | Msa0743380:intron |
| CTGGTAGATGTGGAGAAATG+AGG | 0.559390 | 5_1:+63692756 | None:intergenic |
| GATGTTGTAACAAATGTGGT+TGG | 0.560025 | 5_1:-63690649 | Msa0743380:CDS |
| TTCTTATGCAGTTTCACTAG+TGG | 0.563653 | 5_1:-63690311 | Msa0743380:intron |
| ATTTATGTGACAATTAGGAC+TGG | 0.572892 | 5_1:-63691557 | Msa0743380:CDS |
| GCAGCTGTTATGGCAACACT+TGG | 0.573374 | 5_1:-63691380 | Msa0743380:intron |
| GGTACTGTTATGGAAAATGC+AGG | 0.577276 | 5_1:-63690532 | Msa0743380:intron |
| GAAATGAGGATCAAAGTCAA+AGG | 0.588337 | 5_1:+63692770 | None:intergenic |
| AGTTGACTCCATAGTAATGT+CGG | 0.594687 | 5_1:-63691762 | Msa0743380:CDS |
| CGAACACAAACCAGAACACT+CGG | 0.595875 | 5_1:-63689885 | Msa0743380:CDS |
| AAAGGAAGAATCAGTGTGGA+GGG | 0.602148 | 5_1:+63692788 | None:intergenic |
| AGGCGACCATACATCTGCAT+AGG | 0.602194 | 5_1:+63691043 | None:intergenic |
| CTGTAGCAGTGATCAATGGA+GGG | 0.605241 | 5_1:-63692921 | None:intergenic |
| CTTTGATGTTGTAACAAATG+TGG | 0.615388 | 5_1:-63690653 | Msa0743380:CDS |
| TGTTGAAGCAGCAATAGCCA+TGG | 0.630348 | 5_1:+63691532 | None:intergenic |
| TGGAGTTCTATACTTCGTAG+AGG | 0.633517 | 5_1:-63690191 | Msa0743380:intron |
| CAAAGGAAGAATCAGTGTGG+AGG | 0.635541 | 5_1:+63692787 | None:intergenic |
| AGCTTCTGCAGAAGTTCAGG+AGG | 0.635577 | 5_1:+63690277 | None:intergenic |
| AAGTTGAGAATGCAGCCAGT+AGG | 0.643411 | 5_1:-63691416 | Msa0743380:CDS |
| ACATCTACCAGCTTAAGCAA+AGG | 0.648954 | 5_1:-63692744 | Msa0743380:intron |
| GGTTGACATTGAACTACCAG+AGG | 0.650826 | 5_1:-63690011 | Msa0743380:CDS |
| AGTCAAAGGAAGAATCAGTG+TGG | 0.722817 | 5_1:+63692784 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAACTATTTTCATATA+CGG | + | chr5_1:63691933-63691952 | None:intergenic | 10.0% |
| !! | TAAAACAATTAAACTAACAA+TGG | - | chr5_1:63690284-63690303 | Msa0743380:CDS | 15.0% |
| !! | TTTAATGTCTCAAAATTTAT+AGG | - | chr5_1:63690929-63690948 | Msa0743380:intron | 15.0% |
| !! | TATAAGTTAAAAACAACTAA+TGG | + | chr5_1:63691872-63691891 | None:intergenic | 15.0% |
| !! | ACAAAACAATTAAATAAAGA+TGG | + | chr5_1:63692281-63692300 | None:intergenic | 15.0% |
| !!! | TATGTTTTACTTCATAATTT+TGG | - | chr5_1:63692716-63692735 | Msa0743380:intron | 15.0% |
| !!! | AATCTAGTAAAAAGTATGTT+TGG | + | chr5_1:63690074-63690093 | None:intergenic | 20.0% |
| !! | AAAGGAATATAAACATCTTA+AGG | + | chr5_1:63691132-63691151 | None:intergenic | 20.0% |
| !! | AATTACAACTGTCAATTAAT+CGG | - | chr5_1:63691455-63691474 | Msa0743380:CDS | 20.0% |
| !! | TATTATGATATTTGCAACAT+TGG | - | chr5_1:63691645-63691664 | Msa0743380:intron | 20.0% |
| !! | AACTTATATTCATAATCTCT+AGG | - | chr5_1:63691884-63691903 | Msa0743380:intron | 20.0% |
| !! | AACAATTAAATAAAGATGGA+GGG | + | chr5_1:63692277-63692296 | None:intergenic | 20.0% |
| !! | AAACAATTAAATAAAGATGG+AGG | + | chr5_1:63692278-63692297 | None:intergenic | 20.0% |
| !! | TCGAAAATGACAATTAAAAA+CGG | + | chr5_1:63692350-63692369 | None:intergenic | 20.0% |
| !!! | TACTAAAAGTGATTTAAGTT+TGG | + | chr5_1:63692607-63692626 | None:intergenic | 20.0% |
| ! | AAGAGTTCATATTATGATTC+TGG | + | chr5_1:63689900-63689919 | None:intergenic | 25.0% |
| ! | TTCAATTACTCTATATCTCA+AGG | + | chr5_1:63690249-63690268 | None:intergenic | 25.0% |
| ! | TTGAGATATAGAGTAATTGA+AGG | - | chr5_1:63690248-63690267 | Msa0743380:CDS | 25.0% |
| ! | AACTAACAATGGATGAAATA+AGG | - | chr5_1:63690295-63690314 | Msa0743380:CDS | 25.0% |
| !! | TTTTATTCAAAATCTCCTGA+AGG | + | chr5_1:63690567-63690586 | None:intergenic | 25.0% |
| ! | GTAAATATTGGACCAAAATA+GGG | + | chr5_1:63690837-63690856 | None:intergenic | 25.0% |
| ! | AGTAAATATTGGACCAAAAT+AGG | + | chr5_1:63690838-63690857 | None:intergenic | 25.0% |
| ! | ATAAGTGGAGTAGTAAATAT+TGG | + | chr5_1:63690849-63690868 | None:intergenic | 25.0% |
| ! | TACTATTAAAGCAGTATAAG+TGG | + | chr5_1:63690864-63690883 | None:intergenic | 25.0% |
| ! | TCTAGATTTATGTGACAATT+AGG | - | chr5_1:63691203-63691222 | Msa0743380:CDS | 25.0% |
| !! | AGGGTATTTGTACATATTTA+TGG | + | chr5_1:63691323-63691342 | None:intergenic | 25.0% |
| ! | AATATGTACAAATACCCTAT+TGG | - | chr5_1:63691325-63691344 | Msa0743380:intron | 25.0% |
| ! | AAGTAATAGATAAAGAGACT+TGG | + | chr5_1:63691416-63691435 | None:intergenic | 25.0% |
| ! | ATTAAACTGTTCATTCAAAC+AGG | - | chr5_1:63692035-63692054 | Msa0743380:intron | 25.0% |
| ! | TTAAACTGTTCATTCAAACA+GGG | - | chr5_1:63692036-63692055 | Msa0743380:intron | 25.0% |
| !! | AAGTTAGTATTTGTTAGAGA+CGG | + | chr5_1:63692080-63692099 | None:intergenic | 25.0% |
| !!! | TTCTTGGTGATAAATTTTAC+TGG | - | chr5_1:63692153-63692172 | Msa0743380:intron | 25.0% |
| ! | CAATTTACACTATTTCGAAT+TGG | - | chr5_1:63692207-63692226 | Msa0743380:intron | 25.0% |
| ! | CGAAGAAATAATAGTTAATG+CGG | + | chr5_1:63692382-63692401 | None:intergenic | 25.0% |
| ! | CCATATCATACATAAAATTG+AGG | + | chr5_1:63692659-63692678 | None:intergenic | 25.0% |
| !! | CCTCAATTTTATGTATGATA+TGG | - | chr5_1:63692656-63692675 | Msa0743380:intron | 25.0% |
| !!! | TTTTGGTTCAAATGTAAAAC+AGG | - | chr5_1:63692733-63692752 | Msa0743380:intron | 25.0% |
| !! | ATGATATGTGCTTCTTTTAA+GGG | + | chr5_1:63692785-63692804 | None:intergenic | 25.0% |
| !! | AATGATATGTGCTTCTTTTA+AGG | + | chr5_1:63692786-63692805 | None:intergenic | 25.0% |
| !! | TTAAAAGAAGCACATATCAT+TGG | - | chr5_1:63692785-63692804 | Msa0743380:CDS | 25.0% |
| ! | TTTTGAATAAAAGCTCGTTG+AGG | - | chr5_1:63690575-63690594 | Msa0743380:CDS | 30.0% |
| AACACAAATCACAGTGTTTA+AGG | - | chr5_1:63690899-63690918 | Msa0743380:intron | 30.0% | |
| !! | TGCTACTCTAAAATCATTTG+AGG | - | chr5_1:63690979-63690998 | Msa0743380:intron | 30.0% |
| TTCTATGTCTTCTACATCAA+TGG | + | chr5_1:63691032-63691051 | None:intergenic | 30.0% | |
| TGTAGAAGACATAGAAAAAC+AGG | - | chr5_1:63691036-63691055 | Msa0743380:intron | 30.0% | |
| !! | CTATGCAAATGCAGTTTTAT+TGG | - | chr5_1:63691090-63691109 | Msa0743380:CDS | 30.0% |
| !!! | TGCAGTTTTATTGGCATTAA+AGG | - | chr5_1:63691099-63691118 | Msa0743380:CDS | 30.0% |
| AGATAAGCAAGTATGTTCAA+AGG | + | chr5_1:63691150-63691169 | None:intergenic | 30.0% | |
| ATTTATGTGACAATTAGGAC+TGG | - | chr5_1:63691208-63691227 | Msa0743380:CDS | 30.0% | |
| GCAAAGATAATTATTCCTAC+TGG | + | chr5_1:63691367-63691386 | None:intergenic | 30.0% | |
| AATTATCTTTGCAGCTGTTA+TGG | - | chr5_1:63691375-63691394 | Msa0743380:intron | 30.0% | |
| ! | TCATAAGACATTTTCTCAGA+AGG | + | chr5_1:63691604-63691623 | None:intergenic | 30.0% |
| TGTCTTATGATCAACTAGTA+TGG | - | chr5_1:63691614-63691633 | Msa0743380:intron | 30.0% | |
| AAGCAACTTATCACAAGAAA+AGG | + | chr5_1:63691745-63691764 | None:intergenic | 30.0% | |
| ACATAAGCACTTATGTGATT+AGG | - | chr5_1:63691984-63692003 | Msa0743380:intron | 30.0% | |
| CATAAGCACTTATGTGATTA+GGG | - | chr5_1:63691985-63692004 | Msa0743380:intron | 30.0% | |
| ! | TCTAACAAATACTAACTTGC+AGG | - | chr5_1:63692082-63692101 | Msa0743380:intron | 30.0% |
| CTTTGATGTTGTAACAAATG+TGG | - | chr5_1:63692112-63692131 | Msa0743380:intron | 30.0% | |
| !! | TTGGTGATAAATTTTACTGG+TGG | - | chr5_1:63692156-63692175 | Msa0743380:intron | 30.0% |
| CAAGTAAAATAGCACCAATA+GGG | + | chr5_1:63692187-63692206 | None:intergenic | 30.0% | |
| TAGACTTCACTTTAAATACG+TGG | - | chr5_1:63692406-63692425 | Msa0743380:intron | 30.0% | |
| GATAAATCTTGAGAAACTTC+CGG | - | chr5_1:63692820-63692839 | Msa0743380:CDS | 30.0% | |
| ! | TTCAAGTTCAAGGCCATTAT+TGG | - | chr5_1:63689870-63689889 | Msa0743380:CDS | 35.0% |
| TCAAGTTCAAGGCCATTATT+GGG | - | chr5_1:63689871-63689890 | Msa0743380:CDS | 35.0% | |
| GAAATGAGGATCAAAGTCAA+AGG | + | chr5_1:63689998-63690017 | None:intergenic | 35.0% | |
| ! | TTATTTCTCCACATATCGCT+TGG | - | chr5_1:63690182-63690201 | Msa0743380:intron | 35.0% |
| AATGGATGAAATAAGGCAAG+TGG | - | chr5_1:63690302-63690321 | Msa0743380:CDS | 35.0% | |
| GTTGTGTACTTTCATGTACT+CGG | - | chr5_1:63690448-63690467 | Msa0743380:intron | 35.0% | |
| CACACATGTATCACTCTTAT+GGG | + | chr5_1:63690680-63690699 | None:intergenic | 35.0% | |
| TCACACATGTATCACTCTTA+TGG | + | chr5_1:63690681-63690700 | None:intergenic | 35.0% | |
| ! | AGTTGACTCCATAGTAATGT+CGG | - | chr5_1:63691003-63691022 | Msa0743380:intron | 35.0% |
| AATGGAATCCGACATTACTA+TGG | + | chr5_1:63691014-63691033 | None:intergenic | 35.0% | |
| GCATTCTCAACTTTCCAATA+GGG | + | chr5_1:63691342-63691361 | None:intergenic | 35.0% | |
| TGCATTCTCAACTTTCCAAT+AGG | + | chr5_1:63691343-63691362 | None:intergenic | 35.0% | |
| ATCTTAACAAATCTCGCTAC+AGG | - | chr5_1:63691532-63691551 | Msa0743380:CDS | 35.0% | |
| !! | TGGTTTTACTGCAAAAACTC+AGG | - | chr5_1:63691682-63691701 | Msa0743380:CDS | 35.0% |
| CATAAACACGTGAGACTATT+TGG | - | chr5_1:63691816-63691835 | Msa0743380:CDS | 35.0% | |
| GATGTTGTAACAAATGTGGT+TGG | - | chr5_1:63692116-63692135 | Msa0743380:intron | 35.0% | |
| GCAAGTAAAATAGCACCAAT+AGG | + | chr5_1:63692188-63692207 | None:intergenic | 35.0% | |
| TACACTATTTCGAATTGGTC+TGG | - | chr5_1:63692212-63692231 | Msa0743380:intron | 35.0% | |
| TTCTTATGCAGTTTCACTAG+TGG | - | chr5_1:63692454-63692473 | Msa0743380:intron | 35.0% | |
| TCTTATGCAGTTTCACTAGT+GGG | - | chr5_1:63692455-63692474 | Msa0743380:intron | 35.0% | |
| !! | TCTTTTAAGGGTAAATCCTC+TGG | + | chr5_1:63692773-63692792 | None:intergenic | 35.0% |
| ! | TGGAGGGAAATTCAAGTTCA+AGG | - | chr5_1:63689860-63689879 | Msa0743380:CDS | 40.0% |
| ! | TGATTCTGGTTGCCCAATAA+TGG | + | chr5_1:63689886-63689905 | None:intergenic | 40.0% |
| GTCAAAGAATGGACCTTATC+AGG | + | chr5_1:63689958-63689977 | None:intergenic | 40.0% | |
| AAAGGAAGAATCAGTGTGGA+GGG | + | chr5_1:63689980-63689999 | None:intergenic | 40.0% | |
| AGTCAAAGGAAGAATCAGTG+TGG | + | chr5_1:63689984-63690003 | None:intergenic | 40.0% | |
| TTTGCTTAAGCTGGTAGATG+TGG | + | chr5_1:63690022-63690041 | None:intergenic | 40.0% | |
| ACATCTACCAGCTTAAGCAA+AGG | - | chr5_1:63690021-63690040 | Msa0743380:intron | 40.0% | |
| AGAATGACCTTTGCTTAAGC+TGG | + | chr5_1:63690031-63690050 | None:intergenic | 40.0% | |
| !! | TCCTCGCAAGTATTTCTAGA+AGG | - | chr5_1:63690356-63690375 | Msa0743380:intron | 40.0% |
| AACAAGATCGCTAAGGTGTA+TGG | + | chr5_1:63690382-63690401 | None:intergenic | 40.0% | |
| ! | GATCTTGTTTGATCCGAGTT+GGG | - | chr5_1:63690393-63690412 | Msa0743380:intron | 40.0% |
| CTCAAATCAGCCAGAAAATG+AGG | - | chr5_1:63690474-63690493 | Msa0743380:intron | 40.0% | |
| ! | ATCACACTCACCTCATTTTC+TGG | + | chr5_1:63690487-63690506 | None:intergenic | 40.0% |
| GTGAGTGTGATGTAGTAAAG+TGG | - | chr5_1:63690496-63690515 | Msa0743380:intron | 40.0% | |
| TATGAGGATCTCTTACACTC+AGG | + | chr5_1:63690535-63690554 | None:intergenic | 40.0% | |
| CTGAAGGACTCTACTATATG+AGG | + | chr5_1:63690551-63690570 | None:intergenic | 40.0% | |
| CTCATATAGTAGAGTCCTTC+AGG | - | chr5_1:63690549-63690568 | Msa0743380:CDS | 40.0% | |
| GATACATGTGTGAGTGATGT+TGG | - | chr5_1:63690688-63690707 | Msa0743380:intron | 40.0% | |
| ! | TGTGAAGCAACACCCTATTT+TGG | - | chr5_1:63690822-63690841 | Msa0743380:intron | 40.0% |
| TTCTTGCCTATGCAGATGTA+TGG | - | chr5_1:63691716-63691735 | Msa0743380:CDS | 40.0% | |
| ! | GAATTGGTCTGGTACTGTTA+TGG | - | chr5_1:63692223-63692242 | Msa0743380:intron | 40.0% |
| GGTACTGTTATGGAAAATGC+AGG | - | chr5_1:63692233-63692252 | Msa0743380:intron | 40.0% | |
| TGGAGTTCTATACTTCGTAG+AGG | - | chr5_1:63692574-63692593 | Msa0743380:intron | 40.0% | |
| CTTATCCAAGCTGCCTGATA+AGG | - | chr5_1:63689942-63689961 | Msa0743380:CDS | 45.0% | |
| CAAAGGAAGAATCAGTGTGG+AGG | + | chr5_1:63689981-63690000 | None:intergenic | 45.0% | |
| CTGGTAGATGTGGAGAAATG+AGG | + | chr5_1:63690012-63690031 | None:intergenic | 45.0% | |
| GTTGTTCTCCAAGCGATATG+TGG | + | chr5_1:63690193-63690212 | None:intergenic | 45.0% | |
| ! | GCCTTCTAGAAATACTTGCG+AGG | + | chr5_1:63690360-63690379 | None:intergenic | 45.0% |
| CGGATCAAACAAGATCGCTA+AGG | + | chr5_1:63690389-63690408 | None:intergenic | 45.0% | |
| ! | CGATCTTGTTTGATCCGAGT+TGG | - | chr5_1:63690392-63690411 | Msa0743380:intron | 45.0% |
| ACGTTGAATACTCGCATGAG+TGG | - | chr5_1:63690598-63690617 | Msa0743380:CDS | 45.0% | |
| ACCCTTTGTGATGAGAAGAC+AGG | - | chr5_1:63690627-63690646 | Msa0743380:CDS | 45.0% | |
| CCCTGTCTTCTCATCACAAA+GGG | + | chr5_1:63690631-63690650 | None:intergenic | 45.0% | |
| CCCTTTGTGATGAGAAGACA+GGG | - | chr5_1:63690628-63690647 | Msa0743380:CDS | 45.0% | |
| ACCCTGTCTTCTCATCACAA+AGG | + | chr5_1:63690632-63690651 | None:intergenic | 45.0% | |
| TGGGAACAATCACCATGTGA+TGG | + | chr5_1:63690661-63690680 | None:intergenic | 45.0% | |
| ATGTTGGACCTTAGACGAAG+AGG | - | chr5_1:63690704-63690723 | Msa0743380:intron | 45.0% | |
| GACAATTAGGACTGGATCCA+TGG | - | chr5_1:63691216-63691235 | Msa0743380:intron | 45.0% | |
| TGTTGAAGCAGCAATAGCCA+TGG | + | chr5_1:63691236-63691255 | None:intergenic | 45.0% | |
| ! | GGCTATTGCTGCTTCAACAT+TGG | - | chr5_1:63691237-63691256 | Msa0743380:intron | 45.0% |
| GGATTCTCTGCTTGACTTCA+TGG | - | chr5_1:63691258-63691277 | Msa0743380:intron | 45.0% | |
| AAGTTGAGAATGCAGCCAGT+AGG | - | chr5_1:63691349-63691368 | Msa0743380:intron | 45.0% | |
| AAATCTCGCTACAGGCTTTC+AGG | - | chr5_1:63691540-63691559 | Msa0743380:CDS | 45.0% | |
| CATTGGTGAAGCTTGCACTT+TGG | - | chr5_1:63691662-63691681 | Msa0743380:intron | 45.0% | |
| GACGGCAACACAACTTATGT+TGG | + | chr5_1:63692062-63692081 | None:intergenic | 45.0% | |
| !! | GGATTAGTTGCAGCTGTTCT+TGG | - | chr5_1:63692137-63692156 | Msa0743380:intron | 45.0% |
| !! | TACTGGTGGATTGACCCTAT+TGG | - | chr5_1:63692170-63692189 | Msa0743380:intron | 45.0% |
| ! | GTTAGCTTCTGCAGAAGTTC+AGG | + | chr5_1:63692494-63692513 | None:intergenic | 45.0% |
| ACTGTTCGCGCTTACTCATT+TGG | - | chr5_1:63692554-63692573 | Msa0743380:intron | 45.0% | |
| GGTTGACATTGAACTACCAG+AGG | - | chr5_1:63692754-63692773 | Msa0743380:CDS | 45.0% | |
| CGAACACAAACCAGAACACT+CGG | - | chr5_1:63692880-63692899 | Msa0743380:CDS | 45.0% | |
| CTACTAAGAACCGAGTGTTC+TGG | + | chr5_1:63692893-63692912 | None:intergenic | 45.0% | |
| ATGGACCTTATCAGGCAGCT+TGG | + | chr5_1:63689950-63689969 | None:intergenic | 50.0% | |
| CAGTGTGGAGGGTCAAAGAA+TGG | + | chr5_1:63689969-63689988 | None:intergenic | 50.0% | |
| ATGGCTGAGCTCTCAGACAA+GGG | - | chr5_1:63690425-63690444 | Msa0743380:intron | 50.0% | |
| CAGGGTTTGTGTCCATCACA+TGG | - | chr5_1:63690646-63690665 | Msa0743380:CDS | 50.0% | |
| TACCTGGACCTCTTCGTCTA+AGG | + | chr5_1:63690715-63690734 | None:intergenic | 50.0% | |
| TAGACGAAGAGGTCCAGGTA+AGG | - | chr5_1:63690715-63690734 | Msa0743380:intron | 50.0% | |
| TCAACAATCTCCGCCTTACC+TGG | + | chr5_1:63690731-63690750 | None:intergenic | 50.0% | |
| TCTCTGCTTGACTTCATGGC+TGG | - | chr5_1:63691262-63691281 | Msa0743380:intron | 50.0% | |
| TCATGGCTGGTGGCATACTT+TGG | - | chr5_1:63691275-63691294 | Msa0743380:intron | 50.0% | |
| GCAGCTGTTATGGCAACACT+TGG | - | chr5_1:63691385-63691404 | Msa0743380:CDS | 50.0% | |
| AGGCGACCATACATCTGCAT+AGG | + | chr5_1:63691725-63691744 | None:intergenic | 50.0% | |
| AGCTTCTGCAGAAGTTCAGG+AGG | + | chr5_1:63692491-63692510 | None:intergenic | 50.0% | |
| ACAAACGCTCGCTCAACTTC+CGG | + | chr5_1:63692842-63692861 | None:intergenic | 50.0% | |
| CCATCATTCGCGACCCAACT+CGG | + | chr5_1:63690409-63690428 | None:intergenic | 55.0% | |
| GATGGCTGAGCTCTCAGACA+AGG | - | chr5_1:63690424-63690443 | Msa0743380:intron | 55.0% | |
| TGGCTGAGCTCTCAGACAAG+GGG | - | chr5_1:63690426-63690445 | Msa0743380:intron | 55.0% | |
| GACCTTAGACGAAGAGGTCC+AGG | - | chr5_1:63690710-63690729 | Msa0743380:intron | 55.0% | |
| ACGAAGAGGTCCAGGTAAGG+CGG | - | chr5_1:63690718-63690737 | Msa0743380:intron | 55.0% | |
| CTGCTTGACTTCATGGCTGG+TGG | - | chr5_1:63691265-63691284 | Msa0743380:intron | 55.0% | |
| ! | CCGAGTTGGGTCGCGAATGA+TGG | - | chr5_1:63690406-63690425 | Msa0743380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 63689859 | 63692928 | 63689859 | ID=Msa0743380;Name=Msa0743380 |
| chr5_1 | mRNA | 63689859 | 63692928 | 63689859 | ID=Msa0743380-mRNA-1;Parent=Msa0743380;Name=Msa0743380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|7|0|395 |
| chr5_1 | exon | 63692745 | 63692928 | 63692745 | ID=Msa0743380-mRNA-1:exon:18840;Parent=Msa0743380-mRNA-1 |
| chr5_1 | exon | 63691667 | 63691836 | 63691667 | ID=Msa0743380-mRNA-1:exon:18839;Parent=Msa0743380-mRNA-1 |
| chr5_1 | exon | 63691381 | 63691579 | 63691381 | ID=Msa0743380-mRNA-1:exon:18838;Parent=Msa0743380-mRNA-1 |
| chr5_1 | exon | 63691055 | 63691233 | 63691055 | ID=Msa0743380-mRNA-1:exon:18837;Parent=Msa0743380-mRNA-1 |
| chr5_1 | exon | 63690533 | 63690683 | 63690533 | ID=Msa0743380-mRNA-1:exon:18836;Parent=Msa0743380-mRNA-1 |
| chr5_1 | exon | 63690192 | 63690322 | 63690192 | ID=Msa0743380-mRNA-1:exon:18835;Parent=Msa0743380-mRNA-1 |
| chr5_1 | exon | 63689859 | 63690032 | 63689859 | ID=Msa0743380-mRNA-1:exon:18834;Parent=Msa0743380-mRNA-1 |
| chr5_1 | CDS | 63692745 | 63692928 | 63692745 | ID=Msa0743380-mRNA-1:cds;Parent=Msa0743380-mRNA-1 |
| chr5_1 | CDS | 63691667 | 63691836 | 63691667 | ID=Msa0743380-mRNA-1:cds;Parent=Msa0743380-mRNA-1 |
| chr5_1 | CDS | 63691381 | 63691579 | 63691381 | ID=Msa0743380-mRNA-1:cds;Parent=Msa0743380-mRNA-1 |
| chr5_1 | CDS | 63691055 | 63691233 | 63691055 | ID=Msa0743380-mRNA-1:cds;Parent=Msa0743380-mRNA-1 |
| chr5_1 | CDS | 63690533 | 63690683 | 63690533 | ID=Msa0743380-mRNA-1:cds;Parent=Msa0743380-mRNA-1 |
| chr5_1 | CDS | 63690192 | 63690322 | 63690192 | ID=Msa0743380-mRNA-1:cds;Parent=Msa0743380-mRNA-1 |
| chr5_1 | CDS | 63689859 | 63690032 | 63689859 | ID=Msa0743380-mRNA-1:cds;Parent=Msa0743380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
