AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0589740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589740 MtrunA17_Chr4g0007031 97.748 222 4 1 1 222 1 221 1.29e-157 435
Msa0589740 MtrunA17_Chr5g0419971 97.748 222 4 1 1 222 1 221 1.29e-157 435
Msa0589740 MtrunA17_Chr5g0419981 97.748 222 4 1 1 222 1 221 1.29e-157 435
Msa0589740 MtrunA17_Chr4g0007051 97.297 222 5 1 1 222 1 221 3.78e-157 434
Msa0589740 MtrunA17_Chr2g0285871 95.495 222 9 1 1 222 1 221 2.12e-155 429
Msa0589740 MtrunA17_Chr4g0007041 95.946 222 8 1 1 222 1 221 2.17e-155 429
Msa0589740 MtrunA17_Chr1g0189841 79.372 223 44 2 1 222 1 222 1.25e-126 357
Msa0589740 MtrunA17_Chr6g0449771 76.682 223 48 3 1 222 1 220 9.07e-118 334
Msa0589740 MtrunA17_Chr6g0449751 76.233 223 49 3 1 222 1 220 9.69e-118 334
Msa0589740 MtrunA17_Chr6g0449731 76.577 222 48 3 1 221 1 219 2.35e-117 333
Msa0589740 MtrunA17_Chr6g0449761 74.771 218 53 1 1 218 1 216 2.43e-115 329
Msa0589740 MtrunA17_Chr6g0449781 62.162 222 81 2 1 222 1 219 3.54e-91 267
Msa0589740 MtrunA17_Chr6g0449791 60.766 209 81 1 1 209 1 208 2.07e-87 257
Msa0589740 MtrunA17_Chr1g0156131 58.716 218 78 3 1 216 1 208 2.08e-80 239
Msa0589740 MtrunA17_Chr2g0292831 59.701 201 70 4 19 216 19 211 1.10e-76 229
Msa0589740 MtrunA17_Chr2g0292901 56.818 220 83 5 1 216 1 212 1.09e-72 219
Msa0589740 MtrunA17_Chr2g0292861 63.218 174 57 4 47 216 7 177 3.51e-70 212
Msa0589740 MtrunA17_Chr2g0292841 62.644 174 58 4 47 216 7 177 3.37e-68 207
Msa0589740 MtrunA17_Chr1g0193671 46.296 216 108 3 3 216 4 213 3.68e-61 191
Msa0589740 MtrunA17_Chr1g0193421 46.269 201 100 3 18 216 20 214 2.19e-54 173
Msa0589740 MtrunA17_Chr7g0271211 47.716 197 95 3 22 216 20 210 6.85e-53 169
Msa0589740 MtrunA17_Chr5g0414971 45.455 198 99 4 22 216 27 218 1.19e-48 159
Msa0589740 MtrunA17_Chr2g0292911 64.463 121 37 3 47 164 7 124 3.69e-46 149
Msa0589740 MtrunA17_Chr1g0210761 41.500 200 102 5 19 216 20 206 3.16e-44 147
Msa0589740 MtrunA17_Chr1g0178711 36.036 222 129 5 2 216 5 220 2.12e-41 140
Msa0589740 MtrunA17_Chr2g0300561 40.845 213 108 5 4 214 7 203 1.45e-40 137
Msa0589740 MtrunA17_Chr2g0300581 38.140 215 115 5 3 215 6 204 4.88e-39 134
Msa0589740 MtrunA17_Chr2g0300591 38.318 214 114 5 3 214 6 203 5.21e-39 134
Msa0589740 MtrunA17_Chr8g0335851 40.299 201 106 4 22 220 26 214 1.45e-36 127
Msa0589740 MtrunA17_Chr8g0344021 40.404 198 97 5 1 191 1 184 3.71e-35 124
Msa0589740 MtrunA17_Chr3g0084531 39.691 194 106 5 7 198 3 187 1.45e-33 119
Msa0589740 MtrunA17_Chr8g0343911 37.788 217 118 6 1 215 1 202 2.01e-33 119
Msa0589740 MtrunA17_Chr8g0343934 39.205 176 97 4 7 180 3 170 4.32e-33 118
Msa0589740 MtrunA17_Chr2g0297231 37.379 206 116 5 7 207 3 200 1.71e-31 114
Msa0589740 MtrunA17_Chr2g0297241 37.264 212 116 6 1 207 1 200 2.75e-31 114
Msa0589740 MtrunA17_Chr8g0343954 36.269 193 111 5 26 216 22 204 5.74e-31 113
Msa0589740 MtrunA17_Chr8g0344051 41.111 180 93 4 1 177 1 170 6.33e-31 113
Msa0589740 MtrunA17_Chr2g0313961 36.792 212 117 6 1 207 1 200 1.20e-30 112
Msa0589740 MtrunA17_Chr8g0343961 34.419 215 123 6 4 216 6 204 6.28e-30 110
Msa0589740 MtrunA17_Chr3g0084511 40.000 175 94 5 26 198 21 186 8.89e-30 110
Msa0589740 MtrunA17_Chr3g0084521 37.563 197 105 6 4 198 6 186 9.68e-30 109
Msa0589740 MtrunA17_Chr3g0130241 38.333 180 104 3 3 180 70 244 1.19e-29 111
Msa0589740 MtrunA17_Chr2g0301611 36.782 174 100 4 7 178 3 168 7.44e-29 107
Msa0589740 MtrunA17_Chr2g0321601 34.404 218 116 7 2 215 7 201 9.69e-29 107
Msa0589740 MtrunA17_Chr4g0026201 36.585 205 103 6 16 215 21 203 1.10e-28 107
Msa0589740 MtrunA17_Chr2g0321581 43.182 132 68 3 85 215 77 202 1.22e-28 107
Msa0589740 MtrunA17_Chr2g0302171 41.290 155 81 4 26 178 22 168 2.82e-28 106
Msa0589740 MtrunA17_Chr4g0026191 36.098 205 104 6 16 215 21 203 2.83e-28 105
Msa0589740 MtrunA17_Chr2g0321591 42.424 132 69 3 85 215 77 202 3.80e-28 105
Msa0589740 MtrunA17_Chr2g0302541 38.503 187 102 5 26 207 22 200 1.39e-27 104
Msa0589740 MtrunA17_Chr5g0411961 34.597 211 123 5 1 207 1 200 6.27e-27 102
Msa0589740 MtrunA17_Chr8g0344041 34.826 201 117 5 13 207 12 204 6.59e-26 100
Msa0589740 MtrunA17_Chr4g0003361 35.000 220 118 7 1 216 2 200 1.36e-25 99.0
Msa0589740 MtrunA17_Chr8g0344031 33.945 218 130 6 1 216 1 206 1.55e-25 99.0
Msa0589740 MtrunA17_Chr7g0217811 37.433 187 104 5 26 207 22 200 2.28e-25 98.6
Msa0589740 MtrunA17_Chr4g0012651 37.433 187 104 5 26 207 22 200 6.10e-25 97.4
Msa0589740 MtrunA17_Chr2g0286171 32.727 220 131 7 1 216 1 207 1.88e-24 96.3
Msa0589740 MtrunA17_Chr3g0115141 34.896 192 109 6 28 216 27 205 4.40e-24 95.1
Msa0589740 MtrunA17_Chr8g0343921 33.333 216 126 7 1 214 1 200 8.00e-24 94.4
Msa0589740 MtrunA17_Chr2g0292881 64.407 59 19 1 93 151 1 57 3.94e-20 80.5
Msa0589740 MtrunA17_Chr3g0084551 33.495 206 114 9 1 203 1 186 3.25e-18 80.1
Msa0589740 MtrunA17_Chr3g0084501 37.736 106 61 3 7 110 3 105 6.63e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589740 AT3G05950.1 64.602 226 71 5 4 222 5 228 1.04e-94 276
Msa0589740 AT5G39150.1 63.679 212 73 3 7 216 9 218 5.38e-92 269
Msa0589740 AT5G39120.1 63.679 212 73 3 7 216 9 218 1.07e-91 268
Msa0589740 AT5G39180.1 63.679 212 73 3 7 216 9 218 1.23e-91 268
Msa0589740 AT5G39110.1 63.208 212 75 2 7 216 9 219 4.56e-90 264
Msa0589740 AT5G39160.1 64.762 210 70 3 9 216 11 218 4.82e-90 264
Msa0589740 AT5G39190.1 64.762 210 70 3 9 216 11 218 9.91e-90 263
Msa0589740 AT5G39130.1 63.810 210 72 3 9 216 11 218 2.86e-89 262
Msa0589740 AT4G14630.1 59.545 220 84 3 1 216 3 221 1.02e-85 253
Msa0589740 AT5G39160.3 62.381 210 71 3 9 216 11 214 3.81e-85 252
Msa0589740 AT3G04200.1 61.722 209 76 4 8 214 13 219 4.21e-82 244
Msa0589740 AT5G38910.1 59.276 221 82 4 1 216 1 218 2.65e-79 237
Msa0589740 AT5G39190.2 58.654 208 64 2 9 216 11 196 1.39e-77 232
Msa0589740 AT5G38930.1 61.307 199 73 2 20 216 24 220 1.49e-77 233
Msa0589740 AT5G38940.1 60.406 197 74 2 22 216 26 220 1.50e-77 233
Msa0589740 AT5G38940.2 60.406 197 74 2 22 216 50 244 2.33e-77 233
Msa0589740 AT5G39160.2 58.173 208 65 2 9 216 11 196 2.99e-77 231
Msa0589740 AT5G38960.1 59.406 202 77 3 18 216 22 221 3.85e-77 231
Msa0589740 AT3G04170.1 55.238 210 87 4 8 215 12 216 8.60e-73 221
Msa0589740 AT3G04190.1 55.446 202 86 3 15 214 19 218 3.06e-72 219
Msa0589740 AT3G04150.1 53.917 217 93 4 4 215 5 219 3.59e-72 219
Msa0589740 AT3G04150.2 51.092 229 94 4 4 215 5 232 3.64e-70 214
Msa0589740 AT3G04180.1 53.960 202 89 3 15 214 19 218 2.79e-69 211
Msa0589740 AT1G02335.1 43.721 215 113 3 4 216 6 214 9.98e-57 179
Msa0589740 AT5G38910.2 48.416 221 69 4 1 216 1 181 8.27e-56 176
Msa0589740 AT3G62020.1 46.262 214 105 5 6 216 8 214 1.27e-55 177
Msa0589740 AT1G09560.1 45.050 202 103 3 17 216 19 214 1.85e-53 171
Msa0589740 AT3G05930.1 47.783 203 96 4 4 203 6 201 2.62e-53 171
Msa0589740 AT5G26700.1 49.457 184 78 5 26 205 25 197 3.19e-51 165
Msa0589740 AT1G18970.1 45.274 201 100 4 18 216 25 217 7.66e-50 162
Msa0589740 AT1G18980.1 45.771 201 99 4 18 216 25 217 1.52e-48 159
Msa0589740 AT3G62020.2 46.961 181 89 3 39 216 9 185 4.40e-48 157
Msa0589740 AT1G10460.1 41.709 199 107 5 22 215 19 213 6.33e-45 149
Msa0589740 AT3G10080.1 39.409 203 113 5 18 216 22 218 1.73e-43 146
Msa0589740 AT3G10080.2 39.409 203 113 5 18 216 93 289 8.29e-43 146
Msa0589740 AT5G61750.1 41.398 186 103 2 4 187 1 182 2.01e-40 137
Msa0589740 AT5G20630.1 40.758 211 112 6 1 209 1 200 7.60e-40 136
Msa0589740 AT1G74820.1 39.175 194 108 4 25 216 39 224 8.56e-33 118
Msa0589740 AT1G72610.1 40.314 191 104 6 26 214 19 201 8.74e-33 118
Msa0589740 AT5G38950.1 54.167 72 33 0 146 217 2 73 1.28e-18 78.2

Find 63 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAACTGAATGTTGGATA+TGG 0.274546 4_2:-12991868 Msa0589740:CDS
AGTTTAATTTGGTTTAATAA+TGG 0.274594 4_2:-12991546 Msa0589740:three_prime_UTR
TATATGCATACCACCATCTT+TGG 0.276500 4_2:+12992444 None:intergenic
TAACACTCTTGGTATATCTT+TGG 0.286436 4_2:-12992082 Msa0589740:CDS
CCTTGTTAGCATCCTGGCTT+TGG 0.313379 4_2:-12992533 Msa0589740:CDS
CTTATCCACTTGAAAAGCTT+TGG 0.335788 4_2:+12991741 None:intergenic
TGAAAATGAATGAGACCAAT+TGG 0.343118 4_2:+12991886 None:intergenic
GACTGCCTTCAAGTACTATA+AGG 0.359669 4_2:+12991995 None:intergenic
ATATGCATACCACCATCTTT+GGG 0.396736 4_2:+12992445 None:intergenic
TTGAGAGCCTAGTGCGTTTG+AGG 0.397728 4_2:+12992140 None:intergenic
TTCTTCAAACATGTTGAAGC+TGG 0.402098 4_2:-12992168 Msa0589740:CDS
CTCTAGGGTGGATGTGAGGT+GGG 0.411548 4_2:+12992028 None:intergenic
TTGGAGAGGGCTAGGGTCAT+AGG 0.420416 4_2:+12992492 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 4_2:-12991901 Msa0589740:CDS
GGCAACGCGGTTGCTATCGC+TGG 0.429748 4_2:-12991847 Msa0589740:CDS
CAAAAGTCTTGGAGAGGGCT+AGG 0.434671 4_2:+12992484 None:intergenic
CATCCTGGCTTTGGCATCCT+CGG 0.435136 4_2:-12992524 Msa0589740:CDS
ATTATCTTCAAAAGCAGTCT+TGG 0.442184 4_2:-12991708 Msa0589740:CDS
TCTTCAGCTTTAACAAGTGC+GGG 0.444792 4_2:+12992192 None:intergenic
GTCACTGTAGACCAACTATT+CGG 0.446134 4_2:-12992108 Msa0589740:CDS
GAGATCCTTATAGTACTTGA+AGG 0.457154 4_2:-12992000 Msa0589740:CDS
TACTTTGCAGTATTTGTGAA+TGG 0.463825 4_2:-12992231 Msa0589740:intron
TTTGCAACTGTGATAACTCC+TGG 0.466515 4_2:+12991808 None:intergenic
ATAAGGATCTCTGTTCCTCT+AGG 0.468428 4_2:+12992012 None:intergenic
ATACTTCCTTGTTAGCATCC+TGG 0.478166 4_2:-12992539 Msa0589740:CDS
CTATTCGGACTTAACACTCT+TGG 0.480493 4_2:-12992093 Msa0589740:CDS
CTTGAAGGCAGTCTTTATGT+TGG 0.489113 4_2:-12991985 Msa0589740:CDS
TGATTGCAACACAAAAGTCT+TGG 0.490396 4_2:+12992473 None:intergenic
CCTCTAGGGTGGATGTGAGG+TGG 0.496940 4_2:+12992027 None:intergenic
TGATTGCACAAGGTGATTGA+AGG 0.500741 4_2:+12991642 None:intergenic
TCTTCAAACATGTTGAAGCT+GGG 0.501315 4_2:-12992167 Msa0589740:CDS
CAACCGAGGATGCCAAAGCC+AGG 0.505056 4_2:+12992521 None:intergenic
AGAACTTCGTCGGAAATAAG+AGG 0.511108 4_2:+12991766 None:intergenic
TTGGTATGACAACAACTAGT+TGG 0.511389 4_2:-12991689 Msa0589740:exon
GAAAATGAATGAGACCAATT+GGG 0.515333 4_2:+12991887 None:intergenic
CCAAAGCCAGGATGCTAACA+AGG 0.515624 4_2:+12992533 None:intergenic
TACAATAATAATAAGTAGAG+AGG 0.523624 4_2:+12991618 None:intergenic
TTAACATGATAATGTGGATG+AGG 0.534198 4_2:+12991484 None:intergenic
GAGTGTTAAGTCCGAATAGT+TGG 0.535207 4_2:+12992097 None:intergenic
TGAGGTGGGTTTAAACCCTT+AGG 0.537084 4_2:+12992042 None:intergenic
ATCTTCAGCTTTAACAAGTG+CGG 0.543612 4_2:+12992191 None:intergenic
CTTTACCAAGGTGCTCAACA+AGG 0.544491 4_2:-12991926 Msa0589740:CDS
GGGAATGCCTCAAACGCACT+AGG 0.554068 4_2:-12992147 Msa0589740:CDS
GCAATCAAAGACCCCAAAGA+TGG 0.554146 4_2:-12992457 Msa0589740:CDS
AGCTTTGGTAAGAACTTCGT+CGG 0.555884 4_2:+12991756 None:intergenic
AAAAGTCTTGGAGAGGGCTA+GGG 0.564154 4_2:+12992485 None:intergenic
ATCACCCTTGTTGAGCACCT+TGG 0.567836 4_2:+12991921 None:intergenic
TAAGGATCTCTGTTCCTCTA+GGG 0.571738 4_2:+12992013 None:intergenic
GGACTTAGCAGTCAAAATCC+AGG 0.578792 4_2:-12991826 Msa0589740:CDS
GGATCTCTGTTCCTCTAGGG+TGG 0.590427 4_2:+12992016 None:intergenic
AGGGCTAGGGTCATAGGCAA+AGG 0.609226 4_2:+12992498 None:intergenic
ATCAAAGACCCCAAAGATGG+TGG 0.628410 4_2:-12992454 Msa0589740:intron
TATGCATACCACCATCTTTG+GGG 0.639622 4_2:+12992446 None:intergenic
CAACACAAAAGTCTTGGAGA+GGG 0.641422 4_2:+12992479 None:intergenic
GTTCCTCTAGGGTGGATGTG+AGG 0.650118 4_2:+12992024 None:intergenic
GCAACACAAAAGTCTTGGAG+AGG 0.651085 4_2:+12992478 None:intergenic
GTCATAGGCAAAGGCAACCG+AGG 0.652490 4_2:+12992507 None:intergenic
TTTACCAAGGTGCTCAACAA+GGG 0.659466 4_2:-12991925 Msa0589740:CDS
CCACCTCACATCCACCCTAG+AGG 0.660499 4_2:-12992027 Msa0589740:CDS
CTTCAGCTTTAACAAGTGCG+GGG 0.662073 4_2:+12992193 None:intergenic
GTAGAGAGGTTGATTGCACA+AGG 0.668354 4_2:+12991632 None:intergenic
CAATAATCGTCTCTTTACCA+AGG 0.672342 4_2:-12991938 Msa0589740:CDS
GAATGTTGGATATGGCAACG+CGG 0.840401 4_2:-12991860 Msa0589740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAATTTATA+GGG + chr4_2:12991717-12991736 None:intergenic 0.0%
!! AAAAAAAAAAAAAAATTTAT+AGG + chr4_2:12991718-12991737 None:intergenic 0.0%
!!! ATAAATTTTTTTTTTTTTTT+TGG - chr4_2:12991718-12991737 Msa0589740:CDS 0.0%
!! AAAAAAAAAAAAAATTTATA+GGG + chr4_2:12991717-12991736 None:intergenic 0.0%
!! AAAAAAAAAAAAAAATTTAT+AGG + chr4_2:12991718-12991737 None:intergenic 0.0%
!!! ATAAATTTTTTTTTTTTTTT+TGG - chr4_2:12991718-12991737 Msa0589740:CDS 0.0%
!!! AGTTTAATTTGGTTTAATAA+TGG - chr4_2:12992500-12992519 Msa0589740:CDS 15.0%
!!! AGTTTAATTTGGTTTAATAA+TGG - chr4_2:12992500-12992519 Msa0589740:CDS 15.0%
!! TCTACAAATATTAGACTTAT+TGG - chr4_2:12991684-12991703 Msa0589740:exon 20.0%
!!! AGATATAGAATCTTTTGTTT+TGG - chr4_2:12991754-12991773 Msa0589740:CDS 20.0%
!! TACAATAATAATAAGTAGAG+AGG + chr4_2:12992431-12992450 None:intergenic 20.0%
!! TCTACAAATATTAGACTTAT+TGG - chr4_2:12991684-12991703 Msa0589740:exon 20.0%
!!! AGATATAGAATCTTTTGTTT+TGG - chr4_2:12991754-12991773 Msa0589740:CDS 20.0%
!! TACAATAATAATAAGTAGAG+AGG + chr4_2:12992431-12992450 None:intergenic 20.0%
! GTAATCAAGACTTAAAGTTA+AGG + chr4_2:12991630-12991649 None:intergenic 25.0%
! CAAAAGATTCTATATCTACA+TGG + chr4_2:12991751-12991770 None:intergenic 25.0%
! AATCATAGTTTAGTTAAACC+AGG + chr4_2:12991792-12991811 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+TGG - chr4_2:12992172-12992191 Msa0589740:CDS 25.0%
!!! GAATACATAGTTGTTTTGTT+TGG - chr4_2:12992477-12992496 Msa0589740:CDS 25.0%
!!! GTTTTGTTTGGAGTTTAATT+TGG - chr4_2:12992489-12992508 Msa0589740:CDS 25.0%
! GTAATCAAGACTTAAAGTTA+AGG + chr4_2:12991630-12991649 None:intergenic 25.0%
! CAAAAGATTCTATATCTACA+TGG + chr4_2:12991751-12991770 None:intergenic 25.0%
! AATCATAGTTTAGTTAAACC+AGG + chr4_2:12991792-12991811 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+TGG - chr4_2:12992172-12992191 Msa0589740:CDS 25.0%
!!! GAATACATAGTTGTTTTGTT+TGG - chr4_2:12992477-12992496 Msa0589740:CDS 25.0%
!!! GTTTTGTTTGGAGTTTAATT+TGG - chr4_2:12992489-12992508 Msa0589740:CDS 25.0%
!!! GAATCTTTTGTTTTGGTTCA+TGG - chr4_2:12991761-12991780 Msa0589740:CDS 30.0%
TACTTTGCAGTATTTGTGAA+TGG - chr4_2:12991815-12991834 Msa0589740:CDS 30.0%
TAACACTCTTGGTATATCTT+TGG - chr4_2:12991964-12991983 Msa0589740:CDS 30.0%
GAAAATGAATGAGACCAATT+GGG + chr4_2:12992162-12992181 None:intergenic 30.0%
TGAAAATGAATGAGACCAAT+TGG + chr4_2:12992163-12992182 None:intergenic 30.0%
TTTCAACTGAATGTTGGATA+TGG - chr4_2:12992178-12992197 Msa0589740:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG - chr4_2:12992338-12992357 Msa0589740:intron 30.0%
!!! GAATCTTTTGTTTTGGTTCA+TGG - chr4_2:12991761-12991780 Msa0589740:CDS 30.0%
TACTTTGCAGTATTTGTGAA+TGG - chr4_2:12991815-12991834 Msa0589740:CDS 30.0%
TAACACTCTTGGTATATCTT+TGG - chr4_2:12991964-12991983 Msa0589740:CDS 30.0%
GAAAATGAATGAGACCAATT+GGG + chr4_2:12992162-12992181 None:intergenic 30.0%
TGAAAATGAATGAGACCAAT+TGG + chr4_2:12992163-12992182 None:intergenic 30.0%
TTTCAACTGAATGTTGGATA+TGG - chr4_2:12992178-12992197 Msa0589740:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG - chr4_2:12992338-12992357 Msa0589740:intron 30.0%
TGATTGCAACACAAAAGTCT+TGG + chr4_2:12991576-12991595 None:intergenic 35.0%
ATATGCATACCACCATCTTT+GGG + chr4_2:12991604-12991623 None:intergenic 35.0%
TATATGCATACCACCATCTT+TGG + chr4_2:12991605-12991624 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG + chr4_2:12991858-12991877 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG - chr4_2:12991878-12991897 Msa0589740:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG - chr4_2:12991879-12991898 Msa0589740:CDS 35.0%
GAGATCCTTATAGTACTTGA+AGG - chr4_2:12992046-12992065 Msa0589740:CDS 35.0%
CAATAATCGTCTCTTTACCA+AGG - chr4_2:12992108-12992127 Msa0589740:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG - chr4_2:12992300-12992319 Msa0589740:intron 35.0%
CTTATCCACTTGAAAAGCTT+TGG + chr4_2:12992308-12992327 None:intergenic 35.0%
TTGGTATGACAACAACTAGT+TGG - chr4_2:12992357-12992376 Msa0589740:intron 35.0%
TGATTGCAACACAAAAGTCT+TGG + chr4_2:12991576-12991595 None:intergenic 35.0%
ATATGCATACCACCATCTTT+GGG + chr4_2:12991604-12991623 None:intergenic 35.0%
TATATGCATACCACCATCTT+TGG + chr4_2:12991605-12991624 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG + chr4_2:12991858-12991877 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG - chr4_2:12991878-12991897 Msa0589740:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG - chr4_2:12991879-12991898 Msa0589740:CDS 35.0%
GAGATCCTTATAGTACTTGA+AGG - chr4_2:12992046-12992065 Msa0589740:CDS 35.0%
CAATAATCGTCTCTTTACCA+AGG - chr4_2:12992108-12992127 Msa0589740:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG - chr4_2:12992300-12992319 Msa0589740:intron 35.0%
CTTATCCACTTGAAAAGCTT+TGG + chr4_2:12992308-12992327 None:intergenic 35.0%
TTGGTATGACAACAACTAGT+TGG - chr4_2:12992357-12992376 Msa0589740:intron 35.0%
ATACTTCCTTGTTAGCATCC+TGG - chr4_2:12991507-12991526 Msa0589740:three_prime_UTR 40.0%
CAACACAAAAGTCTTGGAGA+GGG + chr4_2:12991570-12991589 None:intergenic 40.0%
TATGCATACCACCATCTTTG+GGG + chr4_2:12991603-12991622 None:intergenic 40.0%
!!! TTTTGGTTCATGGTGTTTCC+TGG - chr4_2:12991771-12991790 Msa0589740:CDS 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG + chr4_2:12991857-12991876 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG - chr4_2:12991938-12991957 Msa0589740:CDS 40.0%
GAGTGTTAAGTCCGAATAGT+TGG + chr4_2:12991952-12991971 None:intergenic 40.0%
CTATTCGGACTTAACACTCT+TGG - chr4_2:12991953-12991972 Msa0589740:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG + chr4_2:12992036-12992055 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG + chr4_2:12992037-12992056 None:intergenic 40.0%
GACTGCCTTCAAGTACTATA+AGG + chr4_2:12992054-12992073 None:intergenic 40.0%
CTTGAAGGCAGTCTTTATGT+TGG - chr4_2:12992061-12992080 Msa0589740:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG - chr4_2:12992121-12992140 Msa0589740:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr4_2:12992145-12992164 Msa0589740:CDS 40.0%
TTTGCAACTGTGATAACTCC+TGG + chr4_2:12992241-12992260 None:intergenic 40.0%
AGAACTTCGTCGGAAATAAG+AGG + chr4_2:12992283-12992302 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG + chr4_2:12992293-12992312 None:intergenic 40.0%
TGATTGCACAAGGTGATTGA+AGG + chr4_2:12992407-12992426 None:intergenic 40.0%
ATACTTCCTTGTTAGCATCC+TGG - chr4_2:12991507-12991526 Msa0589740:three_prime_UTR 40.0%
CAACACAAAAGTCTTGGAGA+GGG + chr4_2:12991570-12991589 None:intergenic 40.0%
TATGCATACCACCATCTTTG+GGG + chr4_2:12991603-12991622 None:intergenic 40.0%
!!! TTTTGGTTCATGGTGTTTCC+TGG - chr4_2:12991771-12991790 Msa0589740:CDS 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG + chr4_2:12991857-12991876 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG - chr4_2:12991938-12991957 Msa0589740:CDS 40.0%
GAGTGTTAAGTCCGAATAGT+TGG + chr4_2:12991952-12991971 None:intergenic 40.0%
CTATTCGGACTTAACACTCT+TGG - chr4_2:12991953-12991972 Msa0589740:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG + chr4_2:12992036-12992055 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG + chr4_2:12992037-12992056 None:intergenic 40.0%
GACTGCCTTCAAGTACTATA+AGG + chr4_2:12992054-12992073 None:intergenic 40.0%
CTTGAAGGCAGTCTTTATGT+TGG - chr4_2:12992061-12992080 Msa0589740:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG - chr4_2:12992121-12992140 Msa0589740:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr4_2:12992145-12992164 Msa0589740:CDS 40.0%
TTTGCAACTGTGATAACTCC+TGG + chr4_2:12992241-12992260 None:intergenic 40.0%
AGAACTTCGTCGGAAATAAG+AGG + chr4_2:12992283-12992302 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG + chr4_2:12992293-12992312 None:intergenic 40.0%
TGATTGCACAAGGTGATTGA+AGG + chr4_2:12992407-12992426 None:intergenic 40.0%
AAAAGTCTTGGAGAGGGCTA+GGG + chr4_2:12991564-12991583 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr4_2:12991571-12991590 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr4_2:12991589-12991608 Msa0589740:three_prime_UTR 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr4_2:12991592-12991611 Msa0589740:three_prime_UTR 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG + chr4_2:12991856-12991875 None:intergenic 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr4_2:12992007-12992026 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG - chr4_2:12992120-12992139 Msa0589740:CDS 45.0%
GAATGTTGGATATGGCAACG+CGG - chr4_2:12992186-12992205 Msa0589740:CDS 45.0%
GGACTTAGCAGTCAAAATCC+AGG - chr4_2:12992220-12992239 Msa0589740:CDS 45.0%
! GTAGAGAGGTTGATTGCACA+AGG + chr4_2:12992417-12992436 None:intergenic 45.0%
AAAAGTCTTGGAGAGGGCTA+GGG + chr4_2:12991564-12991583 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr4_2:12991571-12991590 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr4_2:12991589-12991608 Msa0589740:three_prime_UTR 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr4_2:12991592-12991611 Msa0589740:three_prime_UTR 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG + chr4_2:12991856-12991875 None:intergenic 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr4_2:12992007-12992026 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG - chr4_2:12992120-12992139 Msa0589740:CDS 45.0%
GAATGTTGGATATGGCAACG+CGG - chr4_2:12992186-12992205 Msa0589740:CDS 45.0%
GGACTTAGCAGTCAAAATCC+AGG - chr4_2:12992220-12992239 Msa0589740:CDS 45.0%
! GTAGAGAGGTTGATTGCACA+AGG + chr4_2:12992417-12992436 None:intergenic 45.0%
!!! TAAAGAAAATTATTATTTTA+CGG + chr4_2:12992542-12992561 None:intergenic 5.0%
!!! TAAAGAAAATTATTATTTTA+CGG + chr4_2:12992542-12992561 None:intergenic 5.0%
CCAAAGCCAGGATGCTAACA+AGG + chr4_2:12991516-12991535 None:intergenic 50.0%
CCTTGTTAGCATCCTGGCTT+TGG - chr4_2:12991513-12991532 Msa0589740:three_prime_UTR 50.0%
CAAAAGTCTTGGAGAGGGCT+AGG + chr4_2:12991565-12991584 None:intergenic 50.0%
TTGAGAGCCTAGTGCGTTTG+AGG + chr4_2:12991909-12991928 None:intergenic 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG - chr4_2:12991988-12992007 Msa0589740:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG - chr4_2:12991989-12992008 Msa0589740:CDS 50.0%
ATCACCCTTGTTGAGCACCT+TGG + chr4_2:12992128-12992147 None:intergenic 50.0%
CCAAAGCCAGGATGCTAACA+AGG + chr4_2:12991516-12991535 None:intergenic 50.0%
CCTTGTTAGCATCCTGGCTT+TGG - chr4_2:12991513-12991532 Msa0589740:three_prime_UTR 50.0%
CAAAAGTCTTGGAGAGGGCT+AGG + chr4_2:12991565-12991584 None:intergenic 50.0%
TTGAGAGCCTAGTGCGTTTG+AGG + chr4_2:12991909-12991928 None:intergenic 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG - chr4_2:12991988-12992007 Msa0589740:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG - chr4_2:12991989-12992008 Msa0589740:CDS 50.0%
ATCACCCTTGTTGAGCACCT+TGG + chr4_2:12992128-12992147 None:intergenic 50.0%
!! CATCCTGGCTTTGGCATCCT+CGG - chr4_2:12991522-12991541 Msa0589740:three_prime_UTR 55.0%
GTCATAGGCAAAGGCAACCG+AGG + chr4_2:12991542-12991561 None:intergenic 55.0%
AGGGCTAGGGTCATAGGCAA+AGG + chr4_2:12991551-12991570 None:intergenic 55.0%
TTGGAGAGGGCTAGGGTCAT+AGG + chr4_2:12991557-12991576 None:intergenic 55.0%
GGGAATGCCTCAAACGCACT+AGG - chr4_2:12991899-12991918 Msa0589740:CDS 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG + chr4_2:12992021-12992040 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG + chr4_2:12992025-12992044 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG + chr4_2:12992033-12992052 None:intergenic 55.0%
!! CATCCTGGCTTTGGCATCCT+CGG - chr4_2:12991522-12991541 Msa0589740:three_prime_UTR 55.0%
GTCATAGGCAAAGGCAACCG+AGG + chr4_2:12991542-12991561 None:intergenic 55.0%
AGGGCTAGGGTCATAGGCAA+AGG + chr4_2:12991551-12991570 None:intergenic 55.0%
TTGGAGAGGGCTAGGGTCAT+AGG + chr4_2:12991557-12991576 None:intergenic 55.0%
GGGAATGCCTCAAACGCACT+AGG - chr4_2:12991899-12991918 Msa0589740:CDS 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG + chr4_2:12992021-12992040 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG + chr4_2:12992025-12992044 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG + chr4_2:12992033-12992052 None:intergenic 55.0%
CAACCGAGGATGCCAAAGCC+AGG + chr4_2:12991528-12991547 None:intergenic 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG + chr4_2:12992022-12992041 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG - chr4_2:12992019-12992038 Msa0589740:CDS 60.0%
CAACCGAGGATGCCAAAGCC+AGG + chr4_2:12991528-12991547 None:intergenic 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG + chr4_2:12992022-12992041 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG - chr4_2:12992019-12992038 Msa0589740:CDS 60.0%
GGCAACGCGGTTGCTATCGC+TGG - chr4_2:12992199-12992218 Msa0589740:CDS 65.0%
GGCAACGCGGTTGCTATCGC+TGG - chr4_2:12992199-12992218 Msa0589740:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 12991496 12992572 12991496 ID=Msa0589740;Name=Msa0589740
chr4_2 mRNA 12991496 12992572 12991496 ID=Msa0589740-mRNA-1;Parent=Msa0589740;Name=Msa0589740-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0.5|1|1|1|2|197|222
chr4_2 exon 12991496 12992243 12991496 ID=Msa0589740-mRNA-1:exon:3820;Parent=Msa0589740-mRNA-1
chr4_2 exon 12992455 12992572 12992455 ID=Msa0589740-mRNA-1:exon:3819;Parent=Msa0589740-mRNA-1
chr4_2 CDS 12992455 12992572 12992455 ID=Msa0589740-mRNA-1:cds;Parent=Msa0589740-mRNA-1
chr4_2 CDS 12991693 12992243 12991693 ID=Msa0589740-mRNA-1:cds;Parent=Msa0589740-mRNA-1
chr4_2 three_prime_UTR 12991496 12991692 12991496 ID=Msa0589740-mRNA-1:three_prime_utr;Parent=Msa0589740-mRNA-1
Gene Sequence

>Msa0589740

ATGAAGACTATATACTTCCTTGTTAGCATCCTGGCTTTGGCATCCTCGGTTGCCTTTGCCTATGACCCTAGCCCTCTCCAAGACTTTTGTGTTGCAATCAAAGACCCCAAAGATGGTGTATTTGTGAATGGAAAATTCTGTAAAGACCCCGCACTTGTTAAAGCTGAAGATTTCTTCAAACATGTTGAAGCTGGGAATGCCTCAAACGCACTAGGCTCTCAAGTAACTCAAGTCACTGTAGACCAACTATTCGGACTTAACACTCTTGGTATATCTTTGGCTCGCGTTGATTTTGCGCCTAAGGGTTTAAACCCACCTCACATCCACCCTAGAGGAACAGAGATCCTTATAGTACTTGAAGGCAGTCTTTATGTTGGATTTGTCACGTCAAATCAAGACAACAATAATCGTCTCTTTACCAAGGTGCTCAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTCATTCATTTTCAACTGAATGTTGGATATGGCAACGCGGTTGCTATCGCTGGACTTAGCAGTCAAAATCCAGGAGTTATCACAGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAATTGATTATCTTCAAAAGCAGTCTTGGTATGACAACAACTAG

Protein sequence

>Msa0589740

MKTIYFLVSILALASSVAFAYDPSPLQDFCVAIKDPKDGVFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTQVTVDQLFGLNTLGISLARVDFAPKGLNPPHIHPRGTEILIVLEGSLYVGFVTSNQDNNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN*