Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814670 | XP_003616059.1 | 97.215 | 395 | 11 | 0 | 1 | 395 | 1 | 395 | 0.0 | 799 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814670 | sp|Q10PP8|MTP4_ORYSJ | 71.106 | 398 | 100 | 6 | 4 | 395 | 7 | 395 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814670 | G7K0W2 | 97.215 | 395 | 11 | 0 | 1 | 395 | 1 | 395 | 0.0 | 799 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604280 | Msa0814670 | 0.812136 | 4.933639e-51 | -8.615850e-47 |
| Msa0685080 | Msa0814670 | 0.802794 | 4.737948e-49 | -8.615850e-47 |
| Msa0743380 | Msa0814670 | 0.833591 | 4.882819e-56 | -8.615850e-47 |
| Msa0814670 | Msa0855270 | 0.840315 | 9.362564e-58 | -8.615850e-47 |
| Msa0814670 | Msa0896920 | 0.819856 | 9.323539e-53 | -8.615850e-47 |
| Msa0814670 | Msa0964510 | 0.802789 | 4.749147e-49 | -8.615850e-47 |
| Msa0409490 | Msa0814670 | 0.804087 | 2.555962e-49 | -8.615850e-47 |
| Msa0554660 | Msa0814670 | 0.840668 | 7.571195e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814670 | MtrunA17_Chr5g0432881 | 97.215 | 395 | 11 | 0 | 1 | 395 | 1 | 395 | 0.0 | 799 |
| Msa0814670 | MtrunA17_Chr3g0108381 | 74.815 | 405 | 89 | 4 | 1 | 395 | 1 | 402 | 0.0 | 614 |
| Msa0814670 | MtrunA17_Chr8g0357061 | 54.985 | 331 | 142 | 4 | 65 | 389 | 64 | 393 | 5.45e-119 | 351 |
| Msa0814670 | MtrunA17_Chr7g0222641 | 55.152 | 330 | 139 | 3 | 65 | 387 | 69 | 396 | 1.57e-118 | 350 |
| Msa0814670 | MtrunA17_Chr2g0310301 | 53.179 | 346 | 150 | 5 | 53 | 387 | 46 | 390 | 8.22e-113 | 335 |
| Msa0814670 | MtrunA17_Chr3g0119281 | 50.559 | 358 | 159 | 6 | 44 | 390 | 49 | 399 | 2.10e-109 | 327 |
| Msa0814670 | MtrunA17_Chr3g0120361 | 67.442 | 43 | 14 | 0 | 142 | 184 | 1 | 43 | 1.21e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814670 | AT3G58060.2 | 65.777 | 412 | 120 | 7 | 1 | 394 | 1 | 409 | 0.0 | 530 |
| Msa0814670 | AT3G58060.1 | 65.777 | 412 | 120 | 7 | 1 | 394 | 1 | 409 | 0.0 | 530 |
| Msa0814670 | AT1G79520.3 | 55.758 | 330 | 139 | 4 | 65 | 388 | 19 | 347 | 1.26e-116 | 343 |
| Msa0814670 | AT1G79520.4 | 55.758 | 330 | 139 | 4 | 65 | 388 | 19 | 347 | 1.26e-116 | 343 |
| Msa0814670 | AT1G79520.1 | 55.758 | 330 | 139 | 4 | 65 | 388 | 72 | 400 | 5.70e-116 | 344 |
| Msa0814670 | AT1G79520.2 | 55.758 | 330 | 139 | 4 | 65 | 388 | 84 | 412 | 9.45e-116 | 343 |
| Msa0814670 | AT1G16310.1 | 52.707 | 351 | 158 | 5 | 44 | 388 | 79 | 427 | 1.87e-113 | 338 |
| Msa0814670 | AT1G16310.2 | 57.525 | 299 | 124 | 3 | 92 | 388 | 17 | 314 | 1.42e-110 | 327 |
| Msa0814670 | AT2G39450.1 | 53.030 | 330 | 146 | 3 | 65 | 387 | 63 | 390 | 1.36e-99 | 301 |
Find 68 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTCTCTGCTTGACTTCA+TGG | 0.203109 | 5_3:-46930658 | Msa0814670:CDS |
| TTCAAGTTCAAGGCCATTAT+TGG | 0.213413 | 5_3:-46932048 | Msa0814670:CDS |
| AAGAGTTCATATTATGATTC+TGG | 0.245546 | 5_3:+46932021 | None:intergenic |
| TCTAGATTTATGTGACAATT+AGG | 0.268110 | 5_3:-46930713 | Msa0814670:intron |
| AAATCTCGCTACAGGCTTTC+AGG | 0.268717 | 5_3:-46930376 | Msa0814670:intron |
| CATTGGTGAAGCTTGCTCTT+TGG | 0.286937 | 5_3:-46930254 | Msa0814670:CDS |
| AATTATCTTTGCAGCTGTTA+TGG | 0.297100 | 5_3:-46930541 | Msa0814670:CDS |
| AGGGTATTTGTACATATTTA+TGG | 0.304407 | 5_3:+46930596 | None:intergenic |
| TGATTCTGGTTGCCCAATAA+TGG | 0.316172 | 5_3:+46932035 | None:intergenic |
| GGATTAGTTGCAGCTGTTCT+TGG | 0.320542 | 5_3:-46929816 | Msa0814670:CDS |
| ACTGTTCGCGCTTACTCGTT+TGG | 0.327598 | 5_3:-46929399 | Msa0814670:CDS |
| TGTCTTATGATCAACTAGTA+TGG | 0.327802 | 5_3:-46930302 | Msa0814670:CDS |
| GAATTGGTCTGGTACTGTTA+TGG | 0.332272 | 5_3:-46929730 | Msa0814670:CDS |
| GTTAGCTTCTGCAGAAGTTC+AGG | 0.342900 | 5_3:+46929462 | None:intergenic |
| GCATTCTTAACTTTCCAATA+GGG | 0.354707 | 5_3:+46930577 | None:intergenic |
| CAATTTACACTATTTCGAAT+TGG | 0.367689 | 5_3:-46929746 | Msa0814670:CDS |
| GTACTTAAAGGCTAACTATC+TGG | 0.370380 | 5_3:+46929036 | None:intergenic |
| TCAAGTTCAAGGCCATTATT+GGG | 0.376578 | 5_3:-46932047 | Msa0814670:CDS |
| GTCAAAGAATGGACCTTATC+AGG | 0.379798 | 5_3:+46931963 | None:intergenic |
| TGCATTCTTAACTTTCCAAT+AGG | 0.383289 | 5_3:+46930576 | None:intergenic |
| GCAAGTACAATAGCACCAAT+AGG | 0.384948 | 5_3:+46929768 | None:intergenic |
| AATATGTACAAATACCCTAT+TGG | 0.393464 | 5_3:-46930591 | Msa0814670:CDS |
| ACAAACGCTCGCTCAACTTC+CGG | 0.395612 | 5_3:+46929114 | None:intergenic |
| TGCTACTCTAAAATCATTTG+AGG | 0.396619 | 5_3:-46930937 | Msa0814670:CDS |
| CTTATCCAAGCTGCCTGATA+AGG | 0.399632 | 5_3:-46931976 | Msa0814670:CDS |
| GGCTATTGCTGCTTCAACAT+TGG | 0.406643 | 5_3:-46930679 | Msa0814670:CDS |
| AATGGAATCCGACATTACTA+TGG | 0.408123 | 5_3:+46930905 | None:intergenic |
| CTACTAAGAACCGAGTGTTC+TGG | 0.411556 | 5_3:+46929063 | None:intergenic |
| CTCTATGTCTTCTATAACAA+TGG | 0.413977 | 5_3:+46930887 | None:intergenic |
| TACACTATTTCGAATTGGTC+TGG | 0.420641 | 5_3:-46929741 | Msa0814670:CDS |
| GATAAATCTTGAGAAACTTC+CGG | 0.424918 | 5_3:-46929133 | Msa0814670:CDS |
| TACTGGTGGATTGACCCTAT+TGG | 0.428785 | 5_3:-46929783 | Msa0814670:CDS |
| TCTCTGCTTGACTTCATGGC+TGG | 0.433184 | 5_3:-46930654 | Msa0814670:CDS |
| TCATGGCTGGTGGCATACTT+TGG | 0.433940 | 5_3:-46930641 | Msa0814670:CDS |
| TTAAAAGAAGCACATATCAT+TGG | 0.458006 | 5_3:-46929168 | Msa0814670:CDS |
| TATTATGATATTTGCAACAT+TGG | 0.463601 | 5_3:-46930271 | Msa0814670:CDS |
| CAAGTACAATAGCACCAATA+GGG | 0.474934 | 5_3:+46929769 | None:intergenic |
| AGAATGACCTTTGCTTAAGC+TGG | 0.479779 | 5_3:+46931890 | None:intergenic |
| TGGAGGGAAATTCAAGTTCA+AGG | 0.495857 | 5_3:-46932058 | Msa0814670:CDS |
| CAGTGTGGAGGGTCAAAGAA+TGG | 0.500698 | 5_3:+46931952 | None:intergenic |
| GACAATTAGGACTGGATCCA+TGG | 0.512333 | 5_3:-46930700 | Msa0814670:CDS |
| CTGCTTGACTTCATGGCTGG+TGG | 0.529766 | 5_3:-46930651 | Msa0814670:CDS |
| AAAGGAAGAGTCAGTGTGGA+GGG | 0.543252 | 5_3:+46931941 | None:intergenic |
| ATGGACCTTATCAGGCAGCT+TGG | 0.545275 | 5_3:+46931971 | None:intergenic |
| TCTTATGCAGTTTCACTAGT+GGG | 0.546741 | 5_3:-46929498 | Msa0814670:intron |
| GATGTTGTAACAAATGTGGT+TGG | 0.560025 | 5_3:-46929837 | Msa0814670:CDS |
| TTCTTATGCAGTTTCACTAG+TGG | 0.563653 | 5_3:-46929499 | Msa0814670:intron |
| TGGAGTTCTATACTTTGTAG+AGG | 0.564531 | 5_3:-46929379 | Msa0814670:intron |
| GAAATGAGGATCAAAGTCAA+AGG | 0.565598 | 5_3:+46931923 | None:intergenic |
| ATTTATGTGACAATTAGGAC+TGG | 0.572892 | 5_3:-46930708 | Msa0814670:CDS |
| GCAGCTGTTATGGCAACACT+TGG | 0.573374 | 5_3:-46930531 | Msa0814670:intron |
| GGTACTGTTATGGAAAATGC+AGG | 0.577276 | 5_3:-46929720 | Msa0814670:intron |
| GCAAAGATAATTATTCCCAC+TGG | 0.584065 | 5_3:+46930552 | None:intergenic |
| AGTTGACTCCATAGTAATGT+CGG | 0.594687 | 5_3:-46930913 | Msa0814670:CDS |
| CGAACACAAACCAGAACACT+CGG | 0.595875 | 5_3:-46929073 | Msa0814670:CDS |
| CTGGTAGATGTAGAGAAATG+AGG | 0.596946 | 5_3:+46931909 | None:intergenic |
| AGGCGACCATACATCTGCAT+AGG | 0.602194 | 5_3:+46930194 | None:intergenic |
| CTGTAGCAGTGATCAATGGA+GGG | 0.605241 | 5_3:-46932074 | None:intergenic |
| AAGTTAAGAATGCAGCCAGT+GGG | 0.609558 | 5_3:-46930567 | Msa0814670:CDS |
| CAAAGGAAGAGTCAGTGTGG+AGG | 0.614163 | 5_3:+46931940 | None:intergenic |
| CTTTGATGTTGTAACAAATG+TGG | 0.615388 | 5_3:-46929841 | Msa0814670:CDS |
| AGCTTCTGCAGAAGTTCAGG+AGG | 0.615943 | 5_3:+46929465 | None:intergenic |
| TTTGAGAGTGCATTATGACA+AGG | 0.619650 | 5_3:+46929436 | None:intergenic |
| TGTTGAAGCAGCAATAGCCA+TGG | 0.630348 | 5_3:+46930683 | None:intergenic |
| ACATCTACCAGCTTAAGCAA+AGG | 0.640619 | 5_3:-46931897 | Msa0814670:intron |
| AAAGTTAAGAATGCAGCCAG+TGG | 0.645123 | 5_3:-46930568 | Msa0814670:CDS |
| GGTTGACATTGAACTACCAG+AGG | 0.650826 | 5_3:-46929199 | Msa0814670:CDS |
| AGTCAAAGGAAGAGTCAGTG+TGG | 0.684363 | 5_3:+46931937 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAACAATTAAACTAACAA+TGG | - | chr5_3:46929474-46929493 | Msa0814670:CDS | 15.0% |
| !!! | TTTTATGTCTCAAAATTTAT+AGG | - | chr5_3:46930119-46930138 | Msa0814670:intron | 15.0% |
| !! | TATTGAAATAACTTATACAT+AGG | - | chr5_3:46931154-46931173 | Msa0814670:intron | 15.0% |
| !! | ACAAAACAATTAAATAAAGA+TGG | + | chr5_3:46931434-46931453 | None:intergenic | 15.0% |
| !!! | TATGTTTTACTTCATAATTT+TGG | - | chr5_3:46931869-46931888 | Msa0814670:intron | 15.0% |
| !!! | AATCTAGTAAAAAGTATGTT+TGG | + | chr5_3:46929262-46929281 | None:intergenic | 20.0% |
| !! | AAAGGAATATAAACATCTTA+AGG | + | chr5_3:46930322-46930341 | None:intergenic | 20.0% |
| !! | AATTACAACTGTCAATTAAT+CGG | - | chr5_3:46930645-46930664 | Msa0814670:CDS | 20.0% |
| !! | TATTATGATATTTGCAACAT+TGG | - | chr5_3:46930835-46930854 | Msa0814670:CDS | 20.0% |
| !!! | CTTTATAAATTGAGTTTGTT+TGG | - | chr5_3:46930952-46930971 | Msa0814670:CDS | 20.0% |
| !! | AACAATTAAATAAAGATGGA+GGG | + | chr5_3:46931430-46931449 | None:intergenic | 20.0% |
| !! | AAACAATTAAATAAAGATGG+AGG | + | chr5_3:46931431-46931450 | None:intergenic | 20.0% |
| !! | TCGAAAATGACAATTAAAAA+CGG | + | chr5_3:46931503-46931522 | None:intergenic | 20.0% |
| !! | CAAAGAAATAATAGTTAATG+CGG | + | chr5_3:46931535-46931554 | None:intergenic | 20.0% |
| !!! | TACTAAAAGTGATTTAAGTT+TGG | + | chr5_3:46931760-46931779 | None:intergenic | 20.0% |
| ! | AAGAGTTCATATTATGATTC+TGG | + | chr5_3:46929088-46929107 | None:intergenic | 25.0% |
| ! | TTCAATTACTCTATATCTCA+AGG | + | chr5_3:46929439-46929458 | None:intergenic | 25.0% |
| ! | TTGAGATATAGAGTAATTGA+AGG | - | chr5_3:46929438-46929457 | Msa0814670:CDS | 25.0% |
| ! | AACTAACAATGGATGAAATA+AGG | - | chr5_3:46929485-46929504 | Msa0814670:CDS | 25.0% |
| !! | TTTTATTCAAAATCTCCTGA+AGG | + | chr5_3:46929757-46929776 | None:intergenic | 25.0% |
| ! | GTAAATATTGGACCAAAATA+GGG | + | chr5_3:46930027-46930046 | None:intergenic | 25.0% |
| ! | AGTAAATATTGGACCAAAAT+AGG | + | chr5_3:46930028-46930047 | None:intergenic | 25.0% |
| ! | ATAAGTGGAGTAGTAAATAT+TGG | + | chr5_3:46930039-46930058 | None:intergenic | 25.0% |
| ! | TACTATTAAAGCAGTATAAG+TGG | + | chr5_3:46930054-46930073 | None:intergenic | 25.0% |
| ! | TCTAGATTTATGTGACAATT+AGG | - | chr5_3:46930393-46930412 | Msa0814670:intron | 25.0% |
| !! | AGGGTATTTGTACATATTTA+TGG | + | chr5_3:46930513-46930532 | None:intergenic | 25.0% |
| ! | AATATGTACAAATACCCTAT+TGG | - | chr5_3:46930515-46930534 | Msa0814670:intron | 25.0% |
| ! | AAGTAATAGATAAAGAGACT+TGG | + | chr5_3:46930606-46930625 | None:intergenic | 25.0% |
| ! | ATAAACAAGTGAGTCTATTT+GGG | - | chr5_3:46931003-46931022 | Msa0814670:intron | 25.0% |
| !! | AAGTTAGTATTTGTTAGAGA+CGG | + | chr5_3:46931233-46931252 | None:intergenic | 25.0% |
| !!! | TTCTTGGTGATAAATTTTAC+TGG | - | chr5_3:46931306-46931325 | Msa0814670:intron | 25.0% |
| ! | CAATTTACACTATTTCGAAT+TGG | - | chr5_3:46931360-46931379 | Msa0814670:intron | 25.0% |
| ! | CCATATCATACATAAAATTG+AGG | + | chr5_3:46931812-46931831 | None:intergenic | 25.0% |
| !! | CCTCAATTTTATGTATGATA+TGG | - | chr5_3:46931809-46931828 | Msa0814670:intron | 25.0% |
| !!! | TTTTGGTTCAAATGTAAAAC+AGG | - | chr5_3:46931886-46931905 | Msa0814670:intron | 25.0% |
| !! | ATGATATGTGCTTCTTTTAA+GGG | + | chr5_3:46931938-46931957 | None:intergenic | 25.0% |
| !! | AATGATATGTGCTTCTTTTA+AGG | + | chr5_3:46931939-46931958 | None:intergenic | 25.0% |
| !! | TTAAAAGAAGCACATATCAT+TGG | - | chr5_3:46931938-46931957 | Msa0814670:CDS | 25.0% |
| ! | TTTTGAATAAAAGCTCGTTG+AGG | - | chr5_3:46929765-46929784 | Msa0814670:CDS | 30.0% |
| AACACAAATCACAGTGTTTA+AGG | - | chr5_3:46930089-46930108 | Msa0814670:intron | 30.0% | |
| !! | TGCTACTCTAAAATCATTTG+AGG | - | chr5_3:46930169-46930188 | Msa0814670:intron | 30.0% |
| CTCTATGTCTTCTATAACAA+TGG | + | chr5_3:46930222-46930241 | None:intergenic | 30.0% | |
| !! | CTATGCAAATGCAGTTTTAT+TGG | - | chr5_3:46930280-46930299 | Msa0814670:CDS | 30.0% |
| !!! | TGCAGTTTTATTGGCATTAA+AGG | - | chr5_3:46930289-46930308 | Msa0814670:CDS | 30.0% |
| AGATAAGCAAGTATGTTCAA+AGG | + | chr5_3:46930340-46930359 | None:intergenic | 30.0% | |
| ATTTATGTGACAATTAGGAC+TGG | - | chr5_3:46930398-46930417 | Msa0814670:intron | 30.0% | |
| GCATTCTTAACTTTCCAATA+GGG | + | chr5_3:46930532-46930551 | None:intergenic | 30.0% | |
| TGCATTCTTAACTTTCCAAT+AGG | + | chr5_3:46930533-46930552 | None:intergenic | 30.0% | |
| AATTATCTTTGCAGCTGTTA+TGG | - | chr5_3:46930565-46930584 | Msa0814670:CDS | 30.0% | |
| ! | TCATAAGACATTTTCTCAGA+AGG | + | chr5_3:46930794-46930813 | None:intergenic | 30.0% |
| TGTCTTATGATCAACTAGTA+TGG | - | chr5_3:46930804-46930823 | Msa0814670:intron | 30.0% | |
| AAGCAACTTATCACAAGAAA+AGG | + | chr5_3:46930935-46930954 | None:intergenic | 30.0% | |
| CATAAACAAGTGAGTCTATT+TGG | - | chr5_3:46931002-46931021 | Msa0814670:intron | 30.0% | |
| CTTATATTCATCATCTCTCT+AGG | - | chr5_3:46931072-46931091 | Msa0814670:intron | 30.0% | |
| ! | TCTAACAAATACTAACTTGC+AGG | - | chr5_3:46931235-46931254 | Msa0814670:intron | 30.0% |
| CTTTGATGTTGTAACAAATG+TGG | - | chr5_3:46931265-46931284 | Msa0814670:intron | 30.0% | |
| !! | TTGGTGATAAATTTTACTGG+TGG | - | chr5_3:46931309-46931328 | Msa0814670:intron | 30.0% |
| TAGACTTCACTTTAAATACG+TGG | - | chr5_3:46931559-46931578 | Msa0814670:intron | 30.0% | |
| GATAAATCTTGAGAAACTTC+CGG | - | chr5_3:46931973-46931992 | Msa0814670:CDS | 30.0% | |
| ! | TTCAAGTTCAAGGCCATTAT+TGG | - | chr5_3:46929058-46929077 | Msa0814670:CDS | 35.0% |
| TCAAGTTCAAGGCCATTATT+GGG | - | chr5_3:46929059-46929078 | Msa0814670:CDS | 35.0% | |
| GAAATGAGGATCAAAGTCAA+AGG | + | chr5_3:46929186-46929205 | None:intergenic | 35.0% | |
| ! | TTATTTCTCCACATATCGCT+TGG | - | chr5_3:46929372-46929391 | Msa0814670:intron | 35.0% |
| AATGGATGAAATAAGGCAAG+TGG | - | chr5_3:46929492-46929511 | Msa0814670:intron | 35.0% | |
| GTTGTGTACTTTCATGTACT+CGG | - | chr5_3:46929638-46929657 | Msa0814670:intron | 35.0% | |
| CACACATGTATCACTCTTAT+GGG | + | chr5_3:46929870-46929889 | None:intergenic | 35.0% | |
| TCACACATGTATCACTCTTA+TGG | + | chr5_3:46929871-46929890 | None:intergenic | 35.0% | |
| ! | TATGAAGCAACACCCTATTT+TGG | - | chr5_3:46930012-46930031 | Msa0814670:intron | 35.0% |
| ! | AGTTGACTCCATAGTAATGT+CGG | - | chr5_3:46930193-46930212 | Msa0814670:intron | 35.0% |
| AATGGAATCCGACATTACTA+TGG | + | chr5_3:46930204-46930223 | None:intergenic | 35.0% | |
| GCAAAGATAATTATTCCCAC+TGG | + | chr5_3:46930557-46930576 | None:intergenic | 35.0% | |
| ATCTTAACAAATCTCGCTAC+AGG | - | chr5_3:46930722-46930741 | Msa0814670:intron | 35.0% | |
| !! | TGGTTTTACTGCAAAAACTC+AGG | - | chr5_3:46930872-46930891 | Msa0814670:CDS | 35.0% |
| ACATAGGCACTTATGTGATA+AGG | - | chr5_3:46931170-46931189 | Msa0814670:intron | 35.0% | |
| GATGTTGTAACAAATGTGGT+TGG | - | chr5_3:46931269-46931288 | Msa0814670:intron | 35.0% | |
| CAAGTACAATAGCACCAATA+GGG | + | chr5_3:46931340-46931359 | None:intergenic | 35.0% | |
| TACACTATTTCGAATTGGTC+TGG | - | chr5_3:46931365-46931384 | Msa0814670:intron | 35.0% | |
| TTCTTATGCAGTTTCACTAG+TGG | - | chr5_3:46931607-46931626 | Msa0814670:intron | 35.0% | |
| TCTTATGCAGTTTCACTAGT+GGG | - | chr5_3:46931608-46931627 | Msa0814670:intron | 35.0% | |
| ! | TTTGAGAGTGCATTATGACA+AGG | + | chr5_3:46931673-46931692 | None:intergenic | 35.0% |
| TGGAGTTCTATACTTTGTAG+AGG | - | chr5_3:46931727-46931746 | Msa0814670:intron | 35.0% | |
| !! | TCTTTTAAGGGTAAATCCTC+TGG | + | chr5_3:46931926-46931945 | None:intergenic | 35.0% |
| ! | TGGAGGGAAATTCAAGTTCA+AGG | - | chr5_3:46929048-46929067 | Msa0814670:CDS | 40.0% |
| ! | TGATTCTGGTTGCCCAATAA+TGG | + | chr5_3:46929074-46929093 | None:intergenic | 40.0% |
| GTCAAAGAATGGACCTTATC+AGG | + | chr5_3:46929146-46929165 | None:intergenic | 40.0% | |
| CTGGTAGATGTAGAGAAATG+AGG | + | chr5_3:46929200-46929219 | None:intergenic | 40.0% | |
| ACATCTACCAGCTTAAGCAA+AGG | - | chr5_3:46929209-46929228 | Msa0814670:intron | 40.0% | |
| AGAATGACCTTTGCTTAAGC+TGG | + | chr5_3:46929219-46929238 | None:intergenic | 40.0% | |
| !! | TCCTCGCAAGTATTTCTAGA+AGG | - | chr5_3:46929546-46929565 | Msa0814670:intron | 40.0% |
| AACAAGATCGCTAAGGTGTA+TGG | + | chr5_3:46929572-46929591 | None:intergenic | 40.0% | |
| ! | GATCTTGTTTGATCCGAGTT+GGG | - | chr5_3:46929583-46929602 | Msa0814670:intron | 40.0% |
| CTCAAATCAGCCAGAAAATG+AGG | - | chr5_3:46929664-46929683 | Msa0814670:intron | 40.0% | |
| ! | ATCACACTCACCTCATTTTC+TGG | + | chr5_3:46929677-46929696 | None:intergenic | 40.0% |
| GTGAGTGTGATGTAGTAAAG+TGG | - | chr5_3:46929686-46929705 | Msa0814670:intron | 40.0% | |
| TATGAGGATCTCTTACACTC+AGG | + | chr5_3:46929725-46929744 | None:intergenic | 40.0% | |
| CTGAAGGACTCTACTATATG+AGG | + | chr5_3:46929741-46929760 | None:intergenic | 40.0% | |
| CTCATATAGTAGAGTCCTTC+AGG | - | chr5_3:46929739-46929758 | Msa0814670:CDS | 40.0% | |
| GATACATGTGTGAGTGATGT+TGG | - | chr5_3:46929878-46929897 | Msa0814670:intron | 40.0% | |
| AAAGTTAAGAATGCAGCCAG+TGG | - | chr5_3:46930538-46930557 | Msa0814670:CDS | 40.0% | |
| AAGTTAAGAATGCAGCCAGT+GGG | - | chr5_3:46930539-46930558 | Msa0814670:CDS | 40.0% | |
| TTCTTGCCTATGCAGATGTA+TGG | - | chr5_3:46930906-46930925 | Msa0814670:CDS | 40.0% | |
| AGTCTATTTGGGAGAGCTTA+TGG | - | chr5_3:46931014-46931033 | Msa0814670:intron | 40.0% | |
| GCAAGTACAATAGCACCAAT+AGG | + | chr5_3:46931341-46931360 | None:intergenic | 40.0% | |
| ! | GAATTGGTCTGGTACTGTTA+TGG | - | chr5_3:46931376-46931395 | Msa0814670:intron | 40.0% |
| GGTACTGTTATGGAAAATGC+AGG | - | chr5_3:46931386-46931405 | Msa0814670:intron | 40.0% | |
| CTTATCCAAGCTGCCTGATA+AGG | - | chr5_3:46929130-46929149 | Msa0814670:CDS | 45.0% | |
| AAAGGAAGAGTCAGTGTGGA+GGG | + | chr5_3:46929168-46929187 | None:intergenic | 45.0% | |
| AGTCAAAGGAAGAGTCAGTG+TGG | + | chr5_3:46929172-46929191 | None:intergenic | 45.0% | |
| GTTGTTCTCCAAGCGATATG+TGG | + | chr5_3:46929383-46929402 | None:intergenic | 45.0% | |
| ! | GCCTTCTAGAAATACTTGCG+AGG | + | chr5_3:46929550-46929569 | None:intergenic | 45.0% |
| CGGATCAAACAAGATCGCTA+AGG | + | chr5_3:46929579-46929598 | None:intergenic | 45.0% | |
| ! | CGATCTTGTTTGATCCGAGT+TGG | - | chr5_3:46929582-46929601 | Msa0814670:intron | 45.0% |
| ACGTTGAATACTCGCATGAG+TGG | - | chr5_3:46929788-46929807 | Msa0814670:CDS | 45.0% | |
| ACCCTTTGTGATGAGAAGAC+AGG | - | chr5_3:46929817-46929836 | Msa0814670:CDS | 45.0% | |
| CCCTGTCTTCTCATCACAAA+GGG | + | chr5_3:46929821-46929840 | None:intergenic | 45.0% | |
| CCCTTTGTGATGAGAAGACA+GGG | - | chr5_3:46929818-46929837 | Msa0814670:CDS | 45.0% | |
| ACCCTGTCTTCTCATCACAA+AGG | + | chr5_3:46929822-46929841 | None:intergenic | 45.0% | |
| TACCTGGATCTCTTCGTCTA+AGG | + | chr5_3:46929905-46929924 | None:intergenic | 45.0% | |
| TAGACGAAGAGATCCAGGTA+AGG | - | chr5_3:46929905-46929924 | Msa0814670:intron | 45.0% | |
| GACAATTAGGACTGGATCCA+TGG | - | chr5_3:46930406-46930425 | Msa0814670:intron | 45.0% | |
| TGTTGAAGCAGCAATAGCCA+TGG | + | chr5_3:46930426-46930445 | None:intergenic | 45.0% | |
| ! | GGCTATTGCTGCTTCAACAT+TGG | - | chr5_3:46930427-46930446 | Msa0814670:intron | 45.0% |
| GGATTCTCTGCTTGACTTCA+TGG | - | chr5_3:46930448-46930467 | Msa0814670:intron | 45.0% | |
| AAATCTCGCTACAGGCTTTC+AGG | - | chr5_3:46930730-46930749 | Msa0814670:intron | 45.0% | |
| ! | CATTGGTGAAGCTTGCTCTT+TGG | - | chr5_3:46930852-46930871 | Msa0814670:CDS | 45.0% |
| GACGGCAACACAACTTATGT+CGG | + | chr5_3:46931215-46931234 | None:intergenic | 45.0% | |
| !! | GGATTAGTTGCAGCTGTTCT+TGG | - | chr5_3:46931290-46931309 | Msa0814670:intron | 45.0% |
| !! | TACTGGTGGATTGACCCTAT+TGG | - | chr5_3:46931323-46931342 | Msa0814670:intron | 45.0% |
| ! | GTTAGCTTCTGCAGAAGTTC+AGG | + | chr5_3:46931647-46931666 | None:intergenic | 45.0% |
| GGTTGACATTGAACTACCAG+AGG | - | chr5_3:46931907-46931926 | Msa0814670:CDS | 45.0% | |
| CGAACACAAACCAGAACACT+CGG | - | chr5_3:46932033-46932052 | Msa0814670:CDS | 45.0% | |
| CTACTAAGAACCGAGTGTTC+TGG | + | chr5_3:46932046-46932065 | None:intergenic | 45.0% | |
| ATGGACCTTATCAGGCAGCT+TGG | + | chr5_3:46929138-46929157 | None:intergenic | 50.0% | |
| CAGTGTGGAGGGTCAAAGAA+TGG | + | chr5_3:46929157-46929176 | None:intergenic | 50.0% | |
| CAAAGGAAGAGTCAGTGTGG+AGG | + | chr5_3:46929169-46929188 | None:intergenic | 50.0% | |
| ATGGCTGAGCTCTCAGACAA+GGG | - | chr5_3:46929615-46929634 | Msa0814670:intron | 50.0% | |
| TGGGAACAATCACCATGCGA+TGG | + | chr5_3:46929851-46929870 | None:intergenic | 50.0% | |
| GACCTTAGACGAAGAGATCC+AGG | - | chr5_3:46929900-46929919 | Msa0814670:intron | 50.0% | |
| ACGAAGAGATCCAGGTAAGG+CGG | - | chr5_3:46929908-46929927 | Msa0814670:intron | 50.0% | |
| TCAACAATCTCCGCCTTACC+TGG | + | chr5_3:46929921-46929940 | None:intergenic | 50.0% | |
| TCTCTGCTTGACTTCATGGC+TGG | - | chr5_3:46930452-46930471 | Msa0814670:intron | 50.0% | |
| TCATGGCTGGTGGCATACTT+TGG | - | chr5_3:46930465-46930484 | Msa0814670:intron | 50.0% | |
| GCAGCTGTTATGGCAACACT+TGG | - | chr5_3:46930575-46930594 | Msa0814670:CDS | 50.0% | |
| AGGCGACCATACATCTGCAT+AGG | + | chr5_3:46930915-46930934 | None:intergenic | 50.0% | |
| AGCTTCTGCAGAAGTTCAGG+AGG | + | chr5_3:46931644-46931663 | None:intergenic | 50.0% | |
| ACTGTTCGCGCTTACTCGTT+TGG | - | chr5_3:46931707-46931726 | Msa0814670:intron | 50.0% | |
| ACAAACGCTCGCTCAACTTC+CGG | + | chr5_3:46931995-46932014 | None:intergenic | 50.0% | |
| CCATCATTCGCGACCCAACT+CGG | + | chr5_3:46929599-46929618 | None:intergenic | 55.0% | |
| GATGGCTGAGCTCTCAGACA+AGG | - | chr5_3:46929614-46929633 | Msa0814670:intron | 55.0% | |
| TGGCTGAGCTCTCAGACAAG+GGG | - | chr5_3:46929616-46929635 | Msa0814670:intron | 55.0% | |
| CAGGGTTTGTGTCCATCGCA+TGG | - | chr5_3:46929836-46929855 | Msa0814670:CDS | 55.0% | |
| CTGCTTGACTTCATGGCTGG+TGG | - | chr5_3:46930455-46930474 | Msa0814670:intron | 55.0% | |
| ! | CCGAGTTGGGTCGCGAATGA+TGG | - | chr5_3:46929596-46929615 | Msa0814670:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 46929047 | 46932081 | 46929047 | ID=Msa0814670;Name=Msa0814670 |
| chr5_3 | mRNA | 46929047 | 46932081 | 46929047 | ID=Msa0814670-mRNA-1;Parent=Msa0814670;Name=Msa0814670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|7|0|395 |
| chr5_3 | exon | 46931898 | 46932081 | 46931898 | ID=Msa0814670-mRNA-1:exon:14253;Parent=Msa0814670-mRNA-1 |
| chr5_3 | exon | 46930818 | 46930987 | 46930818 | ID=Msa0814670-mRNA-1:exon:14252;Parent=Msa0814670-mRNA-1 |
| chr5_3 | exon | 46930532 | 46930730 | 46930532 | ID=Msa0814670-mRNA-1:exon:14251;Parent=Msa0814670-mRNA-1 |
| chr5_3 | exon | 46930206 | 46930384 | 46930206 | ID=Msa0814670-mRNA-1:exon:14250;Parent=Msa0814670-mRNA-1 |
| chr5_3 | exon | 46929721 | 46929871 | 46929721 | ID=Msa0814670-mRNA-1:exon:14249;Parent=Msa0814670-mRNA-1 |
| chr5_3 | exon | 46929380 | 46929510 | 46929380 | ID=Msa0814670-mRNA-1:exon:14248;Parent=Msa0814670-mRNA-1 |
| chr5_3 | exon | 46929047 | 46929220 | 46929047 | ID=Msa0814670-mRNA-1:exon:14247;Parent=Msa0814670-mRNA-1 |
| chr5_3 | CDS | 46931898 | 46932081 | 46931898 | ID=Msa0814670-mRNA-1:cds;Parent=Msa0814670-mRNA-1 |
| chr5_3 | CDS | 46930818 | 46930987 | 46930818 | ID=Msa0814670-mRNA-1:cds;Parent=Msa0814670-mRNA-1 |
| chr5_3 | CDS | 46930532 | 46930730 | 46930532 | ID=Msa0814670-mRNA-1:cds;Parent=Msa0814670-mRNA-1 |
| chr5_3 | CDS | 46930206 | 46930384 | 46930206 | ID=Msa0814670-mRNA-1:cds;Parent=Msa0814670-mRNA-1 |
| chr5_3 | CDS | 46929721 | 46929871 | 46929721 | ID=Msa0814670-mRNA-1:cds;Parent=Msa0814670-mRNA-1 |
| chr5_3 | CDS | 46929380 | 46929510 | 46929380 | ID=Msa0814670-mRNA-1:cds;Parent=Msa0814670-mRNA-1 |
| chr5_3 | CDS | 46929047 | 46929220 | 46929047 | ID=Msa0814670-mRNA-1:cds;Parent=Msa0814670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
