Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855270 | XP_003616059.1 | 97.975 | 395 | 8 | 0 | 1 | 395 | 1 | 395 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855270 | sp|Q10PP8|MTP4_ORYSJ | 71.392 | 395 | 104 | 5 | 4 | 395 | 7 | 395 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855270 | G7K0W2 | 97.975 | 395 | 8 | 0 | 1 | 395 | 1 | 395 | 0.0 | 805 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074620 | Msa0855270 | 0.818485 | 1.912624e-52 | -8.615850e-47 |
| Msa0604280 | Msa0855270 | 0.806653 | 7.408196e-50 | -8.615850e-47 |
| Msa0711230 | Msa0855270 | 0.803805 | 2.925035e-49 | -8.615850e-47 |
| Msa0735130 | Msa0855270 | 0.833887 | 4.119023e-56 | -8.615850e-47 |
| Msa0743380 | Msa0855270 | 0.959504 | 1.626925e-117 | -8.615850e-47 |
| Msa0814670 | Msa0855270 | 0.840315 | 9.362564e-58 | -8.615850e-47 |
| Msa0170990 | Msa0855270 | 0.809654 | 1.700138e-50 | -8.615850e-47 |
| Msa0364550 | Msa0855270 | 0.814647 | 1.385097e-51 | -8.615850e-47 |
| Msa0409490 | Msa0855270 | 0.841936 | 3.511236e-58 | -8.615850e-47 |
| Msa0414480 | Msa0855270 | 0.807273 | 5.477396e-50 | -8.615850e-47 |
| Msa0444250 | Msa0855270 | 0.812391 | 4.341827e-51 | -8.615850e-47 |
| Msa0464300 | Msa0855270 | 0.803673 | 3.115894e-49 | -8.615850e-47 |
| Msa0241220 | Msa0855270 | 0.818403 | 1.996296e-52 | -8.615850e-47 |
| Msa0245660 | Msa0855270 | 0.802931 | 4.438723e-49 | -8.615850e-47 |
| Msa0322460 | Msa0855270 | 0.808712 | 2.707000e-50 | -8.615850e-47 |
| Msa0554660 | Msa0855270 | 0.824475 | 7.911263e-54 | -8.615850e-47 |
| Msa0589740 | Msa0855270 | 0.836479 | 9.134579e-57 | -8.615850e-47 |
| Msa0855270 | Msa0896920 | 0.839723 | 1.336165e-57 | -8.615850e-47 |
| Msa0855270 | Msa0941120 | 0.808743 | 2.665448e-50 | -8.615850e-47 |
| Msa0855270 | Msa0996980 | 0.807998 | 3.842615e-50 | -8.615850e-47 |
| Msa0855270 | Msa1061670 | 0.817956 | 2.519661e-52 | -8.615850e-47 |
| Msa0855270 | Msa1064940 | 0.811249 | 7.692620e-51 | -8.615850e-47 |
| Msa0855270 | Msa1100330 | 0.813579 | 2.383084e-51 | -8.615850e-47 |
| Msa0855270 | Msa1106960 | 0.817295 | 3.550694e-52 | -8.615850e-47 |
| Msa0855270 | Msa1319030 | 0.800293 | 1.542408e-48 | -8.615850e-47 |
| Msa0855270 | Msa1357840 | 0.802209 | 6.253567e-49 | -8.615850e-47 |
| Msa0855270 | Msa1456600 | 0.821337 | 4.261225e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855270 | MtrunA17_Chr5g0432881 | 97.975 | 395 | 8 | 0 | 1 | 395 | 1 | 395 | 0.0 | 805 |
| Msa0855270 | MtrunA17_Chr3g0108381 | 75.802 | 405 | 85 | 4 | 1 | 395 | 1 | 402 | 0.0 | 622 |
| Msa0855270 | MtrunA17_Chr7g0222641 | 56.098 | 328 | 139 | 3 | 65 | 387 | 69 | 396 | 2.21e-119 | 352 |
| Msa0855270 | MtrunA17_Chr8g0357061 | 54.381 | 331 | 144 | 4 | 65 | 389 | 64 | 393 | 4.63e-119 | 351 |
| Msa0855270 | MtrunA17_Chr2g0310301 | 53.799 | 329 | 145 | 4 | 65 | 387 | 63 | 390 | 2.99e-113 | 336 |
| Msa0855270 | MtrunA17_Chr3g0119281 | 50.279 | 358 | 160 | 6 | 44 | 390 | 49 | 399 | 2.91e-109 | 326 |
| Msa0855270 | MtrunA17_Chr3g0120361 | 67.442 | 43 | 14 | 0 | 142 | 184 | 1 | 43 | 1.16e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855270 | AT3G58060.2 | 66.019 | 412 | 119 | 7 | 1 | 394 | 1 | 409 | 0.0 | 530 |
| Msa0855270 | AT3G58060.1 | 66.019 | 412 | 119 | 7 | 1 | 394 | 1 | 409 | 0.0 | 530 |
| Msa0855270 | AT1G79520.3 | 56.061 | 330 | 138 | 4 | 65 | 388 | 19 | 347 | 3.92e-117 | 345 |
| Msa0855270 | AT1G79520.4 | 56.061 | 330 | 138 | 4 | 65 | 388 | 19 | 347 | 3.92e-117 | 345 |
| Msa0855270 | AT1G79520.2 | 56.061 | 330 | 138 | 4 | 65 | 388 | 84 | 412 | 2.09e-116 | 345 |
| Msa0855270 | AT1G79520.1 | 56.061 | 330 | 138 | 4 | 65 | 388 | 72 | 400 | 2.29e-116 | 345 |
| Msa0855270 | AT1G16310.1 | 53.468 | 346 | 153 | 5 | 49 | 388 | 84 | 427 | 1.42e-113 | 338 |
| Msa0855270 | AT1G16310.2 | 57.860 | 299 | 123 | 3 | 92 | 388 | 17 | 314 | 3.30e-111 | 328 |
| Msa0855270 | AT2G39450.1 | 53.963 | 328 | 146 | 3 | 65 | 387 | 63 | 390 | 6.71e-100 | 302 |
Find 66 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTCTCTGCTTGACTTCA+TGG | 0.203109 | 5_4:-48453264 | Msa0855270:CDS |
| TTCAAGTTCAAGGCCATTAT+TGG | 0.213413 | 5_4:-48454670 | Msa0855270:CDS |
| AAGAGTTCATATTATGATTC+TGG | 0.245546 | 5_4:+48454643 | None:intergenic |
| TCTAGATTTATGTGACAATT+AGG | 0.268110 | 5_4:-48453319 | Msa0855270:intron |
| AAATCTCGCTACAGGCTTTC+AGG | 0.268717 | 5_4:-48452982 | Msa0855270:intron |
| AATTATCTTTGCAGCTGTTA+TGG | 0.297100 | 5_4:-48453147 | Msa0855270:CDS |
| AGGGTATTTGTACATATTTA+TGG | 0.304407 | 5_4:+48453202 | None:intergenic |
| TGATTCTGGTTGCCCAATAA+TGG | 0.316172 | 5_4:+48454657 | None:intergenic |
| ACTGTTCGCGCTTACTCATT+TGG | 0.318381 | 5_4:-48451968 | Msa0855270:CDS |
| GGATTAGTTGCAGCTGTTCT+TGG | 0.320542 | 5_4:-48452385 | Msa0855270:CDS |
| GAATTGGTCTGGTACTGTTA+TGG | 0.332272 | 5_4:-48452299 | Msa0855270:CDS |
| GCAAGTAAAATAGCACCAAT+AGG | 0.355419 | 5_4:+48452337 | None:intergenic |
| TGTCTTATGATCAACTAGTA+TGG | 0.357403 | 5_4:-48452908 | Msa0855270:CDS |
| GTTAGCTTCTGCAGAAGTTC+AGG | 0.357908 | 5_4:+48452031 | None:intergenic |
| TTCTATGTCTTCTACATCAA+TGG | 0.358446 | 5_4:+48453493 | None:intergenic |
| CAATTTACACTATTTCGAAT+TGG | 0.367689 | 5_4:-48452315 | Msa0855270:CDS |
| TGCATTCTCAACTTTCCAAT+AGG | 0.373794 | 5_4:+48453182 | None:intergenic |
| TCAAGTTCAAGGCCATTATT+GGG | 0.376578 | 5_4:-48454669 | Msa0855270:CDS |
| GTCAAAGAATGGACCTTATC+AGG | 0.379798 | 5_4:+48454585 | None:intergenic |
| AATATGTACAAATACCCTAT+TGG | 0.393464 | 5_4:-48453197 | Msa0855270:CDS |
| ACAAACGCTCGCTCAACTTC+CGG | 0.395612 | 5_4:+48451683 | None:intergenic |
| AATGGAATCCGACATTACTA+TGG | 0.395704 | 5_4:+48453511 | None:intergenic |
| TGCTACTCTAAAATCATTTG+AGG | 0.396619 | 5_4:-48453543 | Msa0855270:CDS |
| CTTATCCAAGCTGCCTGATA+AGG | 0.399632 | 5_4:-48454598 | Msa0855270:CDS |
| GCATTCTCAACTTTCCAATA+GGG | 0.402495 | 5_4:+48453183 | None:intergenic |
| GGCTATTGCTGCTTCAACAT+TGG | 0.406643 | 5_4:-48453285 | Msa0855270:CDS |
| CTACTAAGAACCGAGTGTTC+TGG | 0.411556 | 5_4:+48451632 | None:intergenic |
| TACACTATTTCGAATTGGTC+TGG | 0.420641 | 5_4:-48452310 | Msa0855270:CDS |
| GATAAATCTTGAGAAACTTC+CGG | 0.424918 | 5_4:-48451702 | Msa0855270:CDS |
| TACTGGTGGATTGACCCTAT+TGG | 0.428785 | 5_4:-48452352 | Msa0855270:CDS |
| TCTCTGCTTGACTTCATGGC+TGG | 0.433184 | 5_4:-48453260 | Msa0855270:CDS |
| TCATGGCTGGTGGCATACTT+TGG | 0.433940 | 5_4:-48453247 | Msa0855270:CDS |
| CAAGTAAAATAGCACCAATA+GGG | 0.443125 | 5_4:+48452338 | None:intergenic |
| TTAAAAGAAGCACATATCAT+TGG | 0.458006 | 5_4:-48451737 | Msa0855270:CDS |
| TATTATGATATTTGCAACAT+TGG | 0.463601 | 5_4:-48452877 | Msa0855270:CDS |
| GCAAAGATAATTATTCCTAC+TGG | 0.493299 | 5_4:+48453158 | None:intergenic |
| TGGAGGGAAATTCAAGTTCA+AGG | 0.495857 | 5_4:-48454680 | Msa0855270:CDS |
| CAGTGTGGAGGGTCAAAGAA+TGG | 0.498745 | 5_4:+48454574 | None:intergenic |
| CATTGGTGAAGCTTGCACTT+TGG | 0.500002 | 5_4:-48452860 | Msa0855270:CDS |
| GTACTTAAAGGCTAACTATC+CGG | 0.500684 | 5_4:+48451605 | None:intergenic |
| GACAATTAGGACTGGATCCA+TGG | 0.512333 | 5_4:-48453306 | Msa0855270:CDS |
| CTGCTTGACTTCATGGCTGG+TGG | 0.529766 | 5_4:-48453257 | Msa0855270:CDS |
| CTCGGTTCTTAGTAGACTAC+CGG | 0.535397 | 5_4:-48451624 | Msa0855270:CDS |
| ATGGACCTTATCAGGCAGCT+TGG | 0.545275 | 5_4:+48454593 | None:intergenic |
| TCTTATGCAGTTTCACTAGT+GGG | 0.546741 | 5_4:-48452067 | Msa0855270:intron |
| GATGTTGTAACAAATGTGGT+TGG | 0.560025 | 5_4:-48452406 | Msa0855270:CDS |
| CTTGTAGATGTAGAGAAATG+AGG | 0.563048 | 5_4:+48454531 | None:intergenic |
| TTCTTATGCAGTTTCACTAG+TGG | 0.563653 | 5_4:-48452068 | Msa0855270:intron |
| GAAATGAGGATCAAAGTCAA+AGG | 0.565598 | 5_4:+48454545 | None:intergenic |
| ATTTATGTGACAATTAGGAC+TGG | 0.572892 | 5_4:-48453314 | Msa0855270:CDS |
| GCAGCTGTTATGGCAACACT+TGG | 0.573374 | 5_4:-48453137 | Msa0855270:intron |
| GGTACTGTTATGGAAAATGC+AGG | 0.577276 | 5_4:-48452289 | Msa0855270:intron |
| AAAGGAAGATTCAGTGTGGA+GGG | 0.594033 | 5_4:+48454563 | None:intergenic |
| AGTTGACTCCATAGTAATGT+CGG | 0.594687 | 5_4:-48453519 | Msa0855270:CDS |
| CGAACACAAACCAGAACACT+CGG | 0.595875 | 5_4:-48451642 | Msa0855270:CDS |
| AGGCGACCATACATCTGCAT+AGG | 0.602194 | 5_4:+48452800 | None:intergenic |
| CTGTAGCAGTGATCAATGGA+GGG | 0.605241 | 5_4:-48454696 | None:intergenic |
| CAAAGGAAGATTCAGTGTGG+AGG | 0.613554 | 5_4:+48454562 | None:intergenic |
| CTTTGATGTTGTAACAAATG+TGG | 0.615388 | 5_4:-48452410 | Msa0855270:CDS |
| TGTTGAAGCAGCAATAGCCA+TGG | 0.630348 | 5_4:+48453289 | None:intergenic |
| TGGAGTTCTATACTTCGTAG+AGG | 0.633517 | 5_4:-48451948 | Msa0855270:intron |
| ACATCTACAAGCTTAAGCAA+AGG | 0.634230 | 5_4:-48454519 | Msa0855270:intron |
| AGCTTCTGCAGAAGTTCAGG+AGG | 0.635577 | 5_4:+48452034 | None:intergenic |
| AAGTTGAGAATGCAGCCAGT+AGG | 0.643411 | 5_4:-48453173 | Msa0855270:CDS |
| GGTTGACATTGAACTACCAG+AGG | 0.650826 | 5_4:-48451768 | Msa0855270:CDS |
| AGTCAAAGGAAGATTCAGTG+TGG | 0.722817 | 5_4:+48454559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAACTATTTTCATATA+CGG | + | chr5_4:48453708-48453727 | None:intergenic | 10.0% |
| !! | TAAAACAATTAAACTAACAA+TGG | - | chr5_4:48452043-48452062 | Msa0855270:CDS | 15.0% |
| !! | GATAAAATAAATTGAATTTG+AGG | - | chr5_4:48452563-48452582 | Msa0855270:intron | 15.0% |
| !! | TTATGTTGTCAAAAAAAAAA+AGG | - | chr5_4:48452674-48452693 | Msa0855270:intron | 15.0% |
| !!! | TTTTATGTCTCAAAATTTAT+AGG | - | chr5_4:48452704-48452723 | Msa0855270:intron | 15.0% |
| !! | TATAAGTTAAAAACAACTAA+TGG | + | chr5_4:48453647-48453666 | None:intergenic | 15.0% |
| !! | ACAAAACAATTAAATAAAGA+TGG | + | chr5_4:48454056-48454075 | None:intergenic | 15.0% |
| !!! | TATGTTTTACTTCATAATTT+TGG | - | chr5_4:48454491-48454510 | Msa0855270:intron | 15.0% |
| !!! | AATCTAGTAAAAAGTATGTT+TGG | + | chr5_4:48451831-48451850 | None:intergenic | 20.0% |
| !!! | TTTTATTAAAAATCTCCTGA+AGG | + | chr5_4:48452328-48452347 | None:intergenic | 20.0% |
| !! | GTAAATATTGGATCAAAATA+GGG | + | chr5_4:48452594-48452613 | None:intergenic | 20.0% |
| !! | AGTAAATATTGGATCAAAAT+AGG | + | chr5_4:48452595-48452614 | None:intergenic | 20.0% |
| !! | AAAGGAATATAAACATCTTA+AGG | + | chr5_4:48452907-48452926 | None:intergenic | 20.0% |
| !! | AATTACAACTGTCAATTAAT+CGG | - | chr5_4:48453230-48453249 | Msa0855270:CDS | 20.0% |
| !! | TATTATGATATTTGCAACAT+TGG | - | chr5_4:48453420-48453439 | Msa0855270:intron | 20.0% |
| !! | AACTTATATTCATAATCTCT+AGG | - | chr5_4:48453659-48453678 | Msa0855270:intron | 20.0% |
| !! | AACAATTAAATAAAGATGGA+GGG | + | chr5_4:48454052-48454071 | None:intergenic | 20.0% |
| !! | AAACAATTAAATAAAGATGG+AGG | + | chr5_4:48454053-48454072 | None:intergenic | 20.0% |
| !! | TCGAAAATGACAATTAAAAA+CGG | + | chr5_4:48454125-48454144 | None:intergenic | 20.0% |
| !!! | TACTAAAAGTGATTTAAGTT+TGG | + | chr5_4:48454382-48454401 | None:intergenic | 20.0% |
| ! | AAGAGTTCATATTATGATTC+TGG | + | chr5_4:48451657-48451676 | None:intergenic | 25.0% |
| ! | TATGTTTGGTACATGATTAA+AGG | + | chr5_4:48451817-48451836 | None:intergenic | 25.0% |
| ! | TTCAATTACTCTATATCTCA+AGG | + | chr5_4:48452008-48452027 | None:intergenic | 25.0% |
| ! | TTGAGATATAGAGTAATTGA+AGG | - | chr5_4:48452007-48452026 | Msa0855270:CDS | 25.0% |
| ! | AACTAACAATGGATGAAATA+AGG | - | chr5_4:48452054-48452073 | Msa0855270:CDS | 25.0% |
| !! | TTTTTAATAAAAGCTCGTTG+AGG | - | chr5_4:48452336-48452355 | Msa0855270:CDS | 25.0% |
| ! | TCTAGATTTATGTGACAATT+AGG | - | chr5_4:48452978-48452997 | Msa0855270:intron | 25.0% |
| !! | AGGGTATTTGTACATATTTA+TGG | + | chr5_4:48453098-48453117 | None:intergenic | 25.0% |
| ! | AATATGTACAAATACCCTAT+TGG | - | chr5_4:48453100-48453119 | Msa0855270:intron | 25.0% |
| ! | AAGTAATAGATAAAGAGACT+TGG | + | chr5_4:48453191-48453210 | None:intergenic | 25.0% |
| ! | ATTAAACTGTTCATTCAAAC+AGG | - | chr5_4:48453810-48453829 | Msa0855270:intron | 25.0% |
| ! | TTAAACTGTTCATTCAAACA+GGG | - | chr5_4:48453811-48453830 | Msa0855270:intron | 25.0% |
| !! | AAGTTAGTATTTGTTAGAGA+CGG | + | chr5_4:48453855-48453874 | None:intergenic | 25.0% |
| !!! | TTCTTGGTGATAAATTTTAC+TGG | - | chr5_4:48453928-48453947 | Msa0855270:intron | 25.0% |
| ! | CAATTTACACTATTTCGAAT+TGG | - | chr5_4:48453982-48454001 | Msa0855270:intron | 25.0% |
| ! | CGAAGAAATAATAGTTAATG+CGG | + | chr5_4:48454157-48454176 | None:intergenic | 25.0% |
| ! | CCATATCATACATAAAATTG+AGG | + | chr5_4:48454434-48454453 | None:intergenic | 25.0% |
| !! | CCTCAATTTTATGTATGATA+TGG | - | chr5_4:48454431-48454450 | Msa0855270:intron | 25.0% |
| !!! | TTTTGGTTCAAATGTAAAAC+AGG | - | chr5_4:48454508-48454527 | Msa0855270:intron | 25.0% |
| !! | ATGATATGTGCTTCTTTTAA+GGG | + | chr5_4:48454560-48454579 | None:intergenic | 25.0% |
| !! | AATGATATGTGCTTCTTTTA+AGG | + | chr5_4:48454561-48454580 | None:intergenic | 25.0% |
| !! | TTAAAAGAAGCACATATCAT+TGG | - | chr5_4:48454560-48454579 | Msa0855270:CDS | 25.0% |
| !! | CACACATGTATCACTTTTAT+GGG | + | chr5_4:48452441-48452460 | None:intergenic | 30.0% |
| !! | TCACACATGTATCACTTTTA+TGG | + | chr5_4:48452442-48452461 | None:intergenic | 30.0% |
| ACTAGTGGAGTAGTAAATAT+TGG | + | chr5_4:48452606-48452625 | None:intergenic | 30.0% | |
| TATGACAGAGAATATACTAG+TGG | + | chr5_4:48452621-48452640 | None:intergenic | 30.0% | |
| AACACAAATCACAGTGTTTA+AGG | - | chr5_4:48452642-48452661 | Msa0855270:intron | 30.0% | |
| TGTCTCAAAATTTATAGGAG+AGG | - | chr5_4:48452709-48452728 | Msa0855270:intron | 30.0% | |
| !! | TGCTACTCTAAAATCATTTG+AGG | - | chr5_4:48452754-48452773 | Msa0855270:intron | 30.0% |
| TTCTATGTCTTCTACATCAA+TGG | + | chr5_4:48452807-48452826 | None:intergenic | 30.0% | |
| TGTAGAAGACATAGAAAAAC+AGG | - | chr5_4:48452811-48452830 | Msa0855270:intron | 30.0% | |
| !! | CTATGCAAATGCAGTTTTAT+TGG | - | chr5_4:48452865-48452884 | Msa0855270:CDS | 30.0% |
| !!! | TGCAGTTTTATTGGCATTAA+AGG | - | chr5_4:48452874-48452893 | Msa0855270:CDS | 30.0% |
| AGATAAGCAAGTATGTTCAA+AGG | + | chr5_4:48452925-48452944 | None:intergenic | 30.0% | |
| ATTTATGTGACAATTAGGAC+TGG | - | chr5_4:48452983-48453002 | Msa0855270:intron | 30.0% | |
| GCAAAGATAATTATTCCTAC+TGG | + | chr5_4:48453142-48453161 | None:intergenic | 30.0% | |
| AATTATCTTTGCAGCTGTTA+TGG | - | chr5_4:48453150-48453169 | Msa0855270:CDS | 30.0% | |
| ! | TCATAAGACATTTTCTCAGA+AGG | + | chr5_4:48453379-48453398 | None:intergenic | 30.0% |
| TGTCTTATGATCAACTAGTA+TGG | - | chr5_4:48453389-48453408 | Msa0855270:intron | 30.0% | |
| AAGCAACTTATCACAAGAAA+AGG | + | chr5_4:48453520-48453539 | None:intergenic | 30.0% | |
| ACATAAGCACTTATGTGATT+AGG | - | chr5_4:48453759-48453778 | Msa0855270:intron | 30.0% | |
| CATAAGCACTTATGTGATTA+GGG | - | chr5_4:48453760-48453779 | Msa0855270:intron | 30.0% | |
| ! | TCTAACAAATACTAACTTGC+AGG | - | chr5_4:48453857-48453876 | Msa0855270:intron | 30.0% |
| CTTTGATGTTGTAACAAATG+TGG | - | chr5_4:48453887-48453906 | Msa0855270:intron | 30.0% | |
| !! | TTGGTGATAAATTTTACTGG+TGG | - | chr5_4:48453931-48453950 | Msa0855270:intron | 30.0% |
| CAAGTAAAATAGCACCAATA+GGG | + | chr5_4:48453962-48453981 | None:intergenic | 30.0% | |
| TAGACTTCACTTTAAATACG+TGG | - | chr5_4:48454181-48454200 | Msa0855270:intron | 30.0% | |
| GATAAATCTTGAGAAACTTC+CGG | - | chr5_4:48454595-48454614 | Msa0855270:CDS | 30.0% | |
| ! | TTCAAGTTCAAGGCCATTAT+TGG | - | chr5_4:48451627-48451646 | Msa0855270:CDS | 35.0% |
| TCAAGTTCAAGGCCATTATT+GGG | - | chr5_4:48451628-48451647 | Msa0855270:CDS | 35.0% | |
| GAAATGAGGATCAAAGTCAA+AGG | + | chr5_4:48451755-48451774 | None:intergenic | 35.0% | |
| CTTGTAGATGTAGAGAAATG+AGG | + | chr5_4:48451769-48451788 | None:intergenic | 35.0% | |
| ACATCTACAAGCTTAAGCAA+AGG | - | chr5_4:48451778-48451797 | Msa0855270:intron | 35.0% | |
| ! | TTATTTCTCCACATATCGCT+TGG | - | chr5_4:48451941-48451960 | Msa0855270:intron | 35.0% |
| AATGGATGAAATAAGGCAAG+TGG | - | chr5_4:48452061-48452080 | Msa0855270:intron | 35.0% | |
| GTTGTGTACTTTCATGTACT+CGG | - | chr5_4:48452207-48452226 | Msa0855270:intron | 35.0% | |
| GAAGGACTCTACTATATATG+AGG | + | chr5_4:48452310-48452329 | None:intergenic | 35.0% | |
| CATATATAGTAGAGTCCTTC+AGG | - | chr5_4:48452310-48452329 | Msa0855270:CDS | 35.0% | |
| ATGTTAGACCTTAGATGAAG+AGG | - | chr5_4:48452461-48452480 | Msa0855270:intron | 35.0% | |
| ! | AGTTGACTCCATAGTAATGT+CGG | - | chr5_4:48452778-48452797 | Msa0855270:intron | 35.0% |
| AATGGAATCCGACATTACTA+TGG | + | chr5_4:48452789-48452808 | None:intergenic | 35.0% | |
| GCATTCTCAACTTTCCAATA+GGG | + | chr5_4:48453117-48453136 | None:intergenic | 35.0% | |
| TGCATTCTCAACTTTCCAAT+AGG | + | chr5_4:48453118-48453137 | None:intergenic | 35.0% | |
| ATCTTAACAAATCTCGCTAC+AGG | - | chr5_4:48453307-48453326 | Msa0855270:CDS | 35.0% | |
| !! | TGGTTTTACTGCAAAAACTC+AGG | - | chr5_4:48453457-48453476 | Msa0855270:CDS | 35.0% |
| CATAAACACGTGAGACTATT+TGG | - | chr5_4:48453591-48453610 | Msa0855270:intron | 35.0% | |
| GATGTTGTAACAAATGTGGT+TGG | - | chr5_4:48453891-48453910 | Msa0855270:intron | 35.0% | |
| GCAAGTAAAATAGCACCAAT+AGG | + | chr5_4:48453963-48453982 | None:intergenic | 35.0% | |
| TACACTATTTCGAATTGGTC+TGG | - | chr5_4:48453987-48454006 | Msa0855270:intron | 35.0% | |
| TTCTTATGCAGTTTCACTAG+TGG | - | chr5_4:48454229-48454248 | Msa0855270:intron | 35.0% | |
| TCTTATGCAGTTTCACTAGT+GGG | - | chr5_4:48454230-48454249 | Msa0855270:intron | 35.0% | |
| !! | TCTTTTAAGGGTAAATCCTC+TGG | + | chr5_4:48454548-48454567 | None:intergenic | 35.0% |
| ! | TGGAGGGAAATTCAAGTTCA+AGG | - | chr5_4:48451617-48451636 | Msa0855270:CDS | 40.0% |
| ! | TGATTCTGGTTGCCCAATAA+TGG | + | chr5_4:48451643-48451662 | None:intergenic | 40.0% |
| GTCAAAGAATGGACCTTATC+AGG | + | chr5_4:48451715-48451734 | None:intergenic | 40.0% | |
| AAAGGAAGATTCAGTGTGGA+GGG | + | chr5_4:48451737-48451756 | None:intergenic | 40.0% | |
| AGTCAAAGGAAGATTCAGTG+TGG | + | chr5_4:48451741-48451760 | None:intergenic | 40.0% | |
| !! | TCCTCGCAAGTATTTCTAGA+AGG | - | chr5_4:48452115-48452134 | Msa0855270:intron | 40.0% |
| AACAAGATCGCTAAGGTGTA+TGG | + | chr5_4:48452141-48452160 | None:intergenic | 40.0% | |
| ! | GATCTTGTTTGATCCGAGTT+GGG | - | chr5_4:48452152-48452171 | Msa0855270:intron | 40.0% |
| CTCAAATCAGCCAGAAAATG+AGG | - | chr5_4:48452233-48452252 | Msa0855270:intron | 40.0% | |
| ! | ATCACACTCACCTCATTTTC+TGG | + | chr5_4:48452246-48452265 | None:intergenic | 40.0% |
| TATGAGGATCTCTTACACTC+AGG | + | chr5_4:48452294-48452313 | None:intergenic | 40.0% | |
| TTCTTGCCTATGCAGATGTA+TGG | - | chr5_4:48453491-48453510 | Msa0855270:CDS | 40.0% | |
| ! | GAATTGGTCTGGTACTGTTA+TGG | - | chr5_4:48453998-48454017 | Msa0855270:intron | 40.0% |
| GGTACTGTTATGGAAAATGC+AGG | - | chr5_4:48454008-48454027 | Msa0855270:intron | 40.0% | |
| TGGAGTTCTATACTTCGTAG+AGG | - | chr5_4:48454349-48454368 | Msa0855270:intron | 40.0% | |
| CTTATCCAAGCTGCCTGATA+AGG | - | chr5_4:48451699-48451718 | Msa0855270:CDS | 45.0% | |
| CAAAGGAAGATTCAGTGTGG+AGG | + | chr5_4:48451738-48451757 | None:intergenic | 45.0% | |
| GTTGTTCTCCAAGCGATATG+TGG | + | chr5_4:48451952-48451971 | None:intergenic | 45.0% | |
| ! | GCCTTCTAGAAATACTTGCG+AGG | + | chr5_4:48452119-48452138 | None:intergenic | 45.0% |
| CGGATCAAACAAGATCGCTA+AGG | + | chr5_4:48452148-48452167 | None:intergenic | 45.0% | |
| ! | CGATCTTGTTTGATCCGAGT+TGG | - | chr5_4:48452151-48452170 | Msa0855270:intron | 45.0% |
| TACCTGGACCTCTTCATCTA+AGG | + | chr5_4:48452472-48452491 | None:intergenic | 45.0% | |
| TAGATGAAGAGGTCCAGGTA+AGG | - | chr5_4:48452472-48452491 | Msa0855270:intron | 45.0% | |
| GACAATTAGGACTGGATCCA+TGG | - | chr5_4:48452991-48453010 | Msa0855270:intron | 45.0% | |
| TGTTGAAGCAGCAATAGCCA+TGG | + | chr5_4:48453011-48453030 | None:intergenic | 45.0% | |
| ! | GGCTATTGCTGCTTCAACAT+TGG | - | chr5_4:48453012-48453031 | Msa0855270:intron | 45.0% |
| GGATTCTCTGCTTGACTTCA+TGG | - | chr5_4:48453033-48453052 | Msa0855270:intron | 45.0% | |
| AAGTTGAGAATGCAGCCAGT+AGG | - | chr5_4:48453124-48453143 | Msa0855270:intron | 45.0% | |
| AAATCTCGCTACAGGCTTTC+AGG | - | chr5_4:48453315-48453334 | Msa0855270:CDS | 45.0% | |
| CATTGGTGAAGCTTGCACTT+TGG | - | chr5_4:48453437-48453456 | Msa0855270:CDS | 45.0% | |
| GACGGCAACACAACTTATGT+TGG | + | chr5_4:48453837-48453856 | None:intergenic | 45.0% | |
| !! | GGATTAGTTGCAGCTGTTCT+TGG | - | chr5_4:48453912-48453931 | Msa0855270:intron | 45.0% |
| !! | TACTGGTGGATTGACCCTAT+TGG | - | chr5_4:48453945-48453964 | Msa0855270:intron | 45.0% |
| ! | GTTAGCTTCTGCAGAAGTTC+AGG | + | chr5_4:48454269-48454288 | None:intergenic | 45.0% |
| ACTGTTCGCGCTTACTCATT+TGG | - | chr5_4:48454329-48454348 | Msa0855270:intron | 45.0% | |
| GGTTGACATTGAACTACCAG+AGG | - | chr5_4:48454529-48454548 | Msa0855270:CDS | 45.0% | |
| CGAACACAAACCAGAACACT+CGG | - | chr5_4:48454655-48454674 | Msa0855270:CDS | 45.0% | |
| CTACTAAGAACCGAGTGTTC+TGG | + | chr5_4:48454668-48454687 | None:intergenic | 45.0% | |
| CTCGGTTCTTAGTAGACTAC+CGG | - | chr5_4:48454673-48454692 | Msa0855270:CDS | 45.0% | |
| ATGGACCTTATCAGGCAGCT+TGG | + | chr5_4:48451707-48451726 | None:intergenic | 50.0% | |
| CAGTGTGGAGGGTCAAAGAA+TGG | + | chr5_4:48451726-48451745 | None:intergenic | 50.0% | |
| ATGGCTGAGCTCTCAGACAA+GGG | - | chr5_4:48452184-48452203 | Msa0855270:intron | 50.0% | |
| ACGTTGAATACTCGCGTGAG+TGG | - | chr5_4:48452359-48452378 | Msa0855270:CDS | 50.0% | |
| ACCCTTCGTGATGAGAAGAC+AGG | - | chr5_4:48452388-48452407 | Msa0855270:CDS | 50.0% | |
| CCCTGTCTTCTCATCACGAA+GGG | + | chr5_4:48452392-48452411 | None:intergenic | 50.0% | |
| CCCTTCGTGATGAGAAGACA+GGG | - | chr5_4:48452389-48452408 | Msa0855270:CDS | 50.0% | |
| ACCCTGTCTTCTCATCACGA+AGG | + | chr5_4:48452393-48452412 | None:intergenic | 50.0% | |
| CAGGGTTTGTGTCCATCACA+TGG | - | chr5_4:48452407-48452426 | Msa0855270:CDS | 50.0% | |
| TGGGAACGATCACCATGTGA+TGG | + | chr5_4:48452422-48452441 | None:intergenic | 50.0% | |
| GACCTTAGATGAAGAGGTCC+AGG | - | chr5_4:48452467-48452486 | Msa0855270:intron | 50.0% | |
| ATGAAGAGGTCCAGGTAAGG+CGG | - | chr5_4:48452475-48452494 | Msa0855270:intron | 50.0% | |
| TCAACAATCTCCGCCTTACC+TGG | + | chr5_4:48452488-48452507 | None:intergenic | 50.0% | |
| TCTCTGCTTGACTTCATGGC+TGG | - | chr5_4:48453037-48453056 | Msa0855270:intron | 50.0% | |
| TCATGGCTGGTGGCATACTT+TGG | - | chr5_4:48453050-48453069 | Msa0855270:intron | 50.0% | |
| GCAGCTGTTATGGCAACACT+TGG | - | chr5_4:48453160-48453179 | Msa0855270:CDS | 50.0% | |
| AGGCGACCATACATCTGCAT+AGG | + | chr5_4:48453500-48453519 | None:intergenic | 50.0% | |
| AGCTTCTGCAGAAGTTCAGG+AGG | + | chr5_4:48454266-48454285 | None:intergenic | 50.0% | |
| ACAAACGCTCGCTCAACTTC+CGG | + | chr5_4:48454617-48454636 | None:intergenic | 50.0% | |
| CCATCATTCGCGACCCAACT+CGG | + | chr5_4:48452168-48452187 | None:intergenic | 55.0% | |
| GATGGCTGAGCTCTCAGACA+AGG | - | chr5_4:48452183-48452202 | Msa0855270:intron | 55.0% | |
| TGGCTGAGCTCTCAGACAAG+GGG | - | chr5_4:48452185-48452204 | Msa0855270:intron | 55.0% | |
| CTGCTTGACTTCATGGCTGG+TGG | - | chr5_4:48453040-48453059 | Msa0855270:intron | 55.0% | |
| ! | CCGAGTTGGGTCGCGAATGA+TGG | - | chr5_4:48452165-48452184 | Msa0855270:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 48451616 | 48454703 | 48451616 | ID=Msa0855270;Name=Msa0855270 |
| chr5_4 | mRNA | 48451616 | 48454703 | 48451616 | ID=Msa0855270-mRNA-1;Parent=Msa0855270;Name=Msa0855270-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|7|0|395 |
| chr5_4 | exon | 48454520 | 48454703 | 48454520 | ID=Msa0855270-mRNA-1:exon:15276;Parent=Msa0855270-mRNA-1 |
| chr5_4 | exon | 48453424 | 48453593 | 48453424 | ID=Msa0855270-mRNA-1:exon:15275;Parent=Msa0855270-mRNA-1 |
| chr5_4 | exon | 48453138 | 48453336 | 48453138 | ID=Msa0855270-mRNA-1:exon:15274;Parent=Msa0855270-mRNA-1 |
| chr5_4 | exon | 48452812 | 48452990 | 48452812 | ID=Msa0855270-mRNA-1:exon:15273;Parent=Msa0855270-mRNA-1 |
| chr5_4 | exon | 48452290 | 48452440 | 48452290 | ID=Msa0855270-mRNA-1:exon:15272;Parent=Msa0855270-mRNA-1 |
| chr5_4 | exon | 48451949 | 48452079 | 48451949 | ID=Msa0855270-mRNA-1:exon:15271;Parent=Msa0855270-mRNA-1 |
| chr5_4 | exon | 48451616 | 48451789 | 48451616 | ID=Msa0855270-mRNA-1:exon:15270;Parent=Msa0855270-mRNA-1 |
| chr5_4 | CDS | 48454520 | 48454703 | 48454520 | ID=Msa0855270-mRNA-1:cds;Parent=Msa0855270-mRNA-1 |
| chr5_4 | CDS | 48453424 | 48453593 | 48453424 | ID=Msa0855270-mRNA-1:cds;Parent=Msa0855270-mRNA-1 |
| chr5_4 | CDS | 48453138 | 48453336 | 48453138 | ID=Msa0855270-mRNA-1:cds;Parent=Msa0855270-mRNA-1 |
| chr5_4 | CDS | 48452812 | 48452990 | 48452812 | ID=Msa0855270-mRNA-1:cds;Parent=Msa0855270-mRNA-1 |
| chr5_4 | CDS | 48452290 | 48452440 | 48452290 | ID=Msa0855270-mRNA-1:cds;Parent=Msa0855270-mRNA-1 |
| chr5_4 | CDS | 48451949 | 48452079 | 48451949 | ID=Msa0855270-mRNA-1:cds;Parent=Msa0855270-mRNA-1 |
| chr5_4 | CDS | 48451616 | 48451789 | 48451616 | ID=Msa0855270-mRNA-1:cds;Parent=Msa0855270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
