AlfalfaGEDB | Msa0747250

M. sativa cultivar zhongmu-4 / Msa0747250

KEGG: K03065
GO: GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
PFAM: PF16450.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747250	XP_003591146.1	100.000	423	0	0	1	423	1	423	0.0	863

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747250	sp\|Q9SEI2\|PS6AA_ARATH	95.283	424	19	1	1	423	1	424	0.0	830

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747250	G7I8P7	100.000	423	0	0	1	423	1	423	0.0	863

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005010	Msa0747250	0.828850	7.148466e-55	-8.615850e-47
Msa0180100	Msa0747250	-0.844808	6.008519e-59	-8.615850e-47
Msa0184510	Msa0747250	-0.804206	2.414319e-49	-8.615850e-47
Msa0187210	Msa0747250	0.949493	1.137793e-107	-8.615850e-47
Msa0653340	Msa0747250	0.814370	1.594967e-51	-8.615850e-47
Msa0695760	Msa0747250	0.804034	2.622370e-49	-8.615850e-47
Msa0747250	Msa0747730	0.828350	9.441227e-55	-8.615850e-47
Msa0747250	Msa0793230	0.975988	5.652535e-141	-8.615850e-47
Msa0747250	Msa1183740	0.803965	2.709958e-49	-8.615850e-47
Msa0747250	Msa1462050	0.973098	7.413637e-136	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747250	MtrunA17_Chr1g0192151	100.000	423	0	0	1	423	1	423	0.0	863
Msa0747250	MtrunA17_Chr4g0014731	98.815	422	5	0	2	423	3	424	0.0	852
Msa0747250	MtrunA17_Chr1g0182711	44.670	394	186	3	34	416	65	437	3.52e-113	339
Msa0747250	MtrunA17_Chr7g0262801	45.669	381	185	2	37	416	77	436	4.12e-112	336
Msa0747250	MtrunA17_Chr4g0050561	52.740	292	137	1	124	414	113	404	3.61e-106	320
Msa0747250	MtrunA17_Chr8g0345461	52.542	295	137	1	120	411	115	409	1.69e-105	318
Msa0747250	MtrunA17_Chr1g0200081	52.203	295	137	2	120	411	125	418	1.95e-102	311
Msa0747250	MtrunA17_Chr3g0145011	46.201	329	171	2	97	423	73	397	1.88e-98	300
Msa0747250	MtrunA17_Chr3g0141901	45.872	327	172	2	97	422	70	392	2.34e-97	296
Msa0747250	MtrunA17_Chr3g0108321	43.421	304	151	2	48	351	61	343	2.33e-88	273

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747250	AT3G05530.1	95.283	424	19	1	1	423	1	424	0.0	830
Msa0747250	AT1G09100.1	95.272	423	20	0	1	423	1	423	0.0	822
Msa0747250	AT4G29040.1	46.457	381	182	2	37	416	75	434	3.50e-114	342
Msa0747250	AT2G20140.1	46.457	381	182	2	37	416	75	434	1.30e-113	340
Msa0747250	AT5G19990.2	53.082	292	136	1	124	414	57	348	3.67e-107	321
Msa0747250	AT5G20000.1	53.425	292	135	1	124	414	115	406	7.39e-107	322
Msa0747250	AT5G19990.1	53.082	292	136	1	124	414	115	406	1.68e-106	321
Msa0747250	AT5G19990.3	53.082	292	136	1	124	414	115	406	1.68e-106	321
Msa0747250	AT1G53750.1	52.542	295	137	1	120	411	115	409	3.06e-105	318
Msa0747250	AT5G58290.1	40.533	375	202	2	48	422	54	407	1.81e-102	310

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Find 118 sgRNAs with CRISPR-Local

Find 667 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATTACCCTATCTTGT+TGG	0.411929	5_1:+70930911	Msa0747250:CDS
AAAGAGCGCTTCCAGAAGTT+AGG	0.468454	5_1:+70932056	Msa0747250:CDS
AAATTGAATTGAAATCGATA+TGG	0.423255	5_1:+70930578	Msa0747250:exon
AACAAACCTCAGTTGCATCA+CGG	0.628397	5_1:-70933634	None:intergenic
AACAATGTTACCAACAAGAT+AGG	0.382812	5_1:-70930921	None:intergenic
AACCACGAGGACTTTAATGA+AGG	0.588663	5_1:+70934374	Msa0747250:CDS
AACTATGTACAGATGTTCAT+AGG	0.516004	5_1:+70932610	Msa0747250:intron
AAGCGCTCTTTGTGGGTCAT+TGG	0.433595	5_1:-70932044	None:intergenic
AAGGCTGTCTGTGTTGAGGC+TGG	0.496605	5_1:+70933596	Msa0747250:CDS
AATCGATATGGCGAGCGCAA+TGG	0.565450	5_1:+70930590	Msa0747250:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAGCACAATAGCAGATTT+GGG	-	chr5_1:70930506-70930525	None:intergenic	30.0%
ATTTAGCACAATAGCAGATT+TGG	-	chr5_1:70930507-70930526	None:intergenic	30.0%
CTAATAACGTCAATCGAAAT+AGG	-	chr5_1:70930534-70930553	None:intergenic	30.0%
AAACAATTACCCTATCTTGT+TGG	+	chr5_1:70930911-70930930	Msa0747250:CDS	30.0%
ACAATGTTACCAACAAGATA+GGG	-	chr5_1:70930923-70930942	None:intergenic	30.0%
AACAATGTTACCAACAAGAT+AGG	-	chr5_1:70930924-70930943	None:intergenic	30.0%
TTGCCAAAATTATTCGATTG+TGG	-	chr5_1:70931126-70931145	None:intergenic	30.0%
TTGTGAGTCAAGATCAATAT+TGG	-	chr5_1:70931437-70931456	None:intergenic	30.0%
ATATTGATCTTGACTCACAA+AGG	+	chr5_1:70931437-70931456	Msa0747250:CDS	30.0%
ACTGAAGATAACAGAAAATC+AGG	-	chr5_1:70932346-70932365	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	70930354	70941715	70930354	ID=Msa0747250;Name=Msa0747250
chr5_1	mRNA	70930354	70941715	70930354	ID=Msa0747250-mRNA-1;Parent=Msa0747250;Name=Msa0747250-mRNA-1;_AED=0.12;_eAED=0.12;_QI=221\|1\|1\|1\|0.75\|0.61\|13\|176\|423
chr5_1	exon	70930354	70930517	70930354	ID=Msa0747250-mRNA-1:exon:20957;Parent=Msa0747250-mRNA-1
chr5_1	exon	70930540	70930713	70930540	ID=Msa0747250-mRNA-1:exon:20958;Parent=Msa0747250-mRNA-1
chr5_1	exon	70930830	70930946	70930830	ID=Msa0747250-mRNA-1:exon:20959;Parent=Msa0747250-mRNA-1
chr5_1	exon	70931391	70931498	70931391	ID=Msa0747250-mRNA-1:exon:20960;Parent=Msa0747250-mRNA-1
chr5_1	exon	70931716	70931907	70931716	ID=Msa0747250-mRNA-1:exon:20961;Parent=Msa0747250-mRNA-1
chr5_1	exon	70932014	70932205	70932014	ID=Msa0747250-mRNA-1:exon:20962;Parent=Msa0747250-mRNA-1
chr5_1	exon	70932622	70932740	70932622	ID=Msa0747250-mRNA-1:exon:20963;Parent=Msa0747250-mRNA-1
chr5_1	exon	70932904	70932991	70932904	ID=Msa0747250-mRNA-1:exon:20964;Parent=Msa0747250-mRNA-1
chr5_1	exon	70933300	70933419	70933300	ID=Msa0747250-mRNA-1:exon:20965;Parent=Msa0747250-mRNA-1
chr5_1	exon	70933509	70933649	70933509	ID=Msa0747250-mRNA-1:exon:20966;Parent=Msa0747250-mRNA-1
chr5_1	exon	70934371	70934523	70934371	ID=Msa0747250-mRNA-1:exon:20967;Parent=Msa0747250-mRNA-1
chr5_1	exon	70934550	70934582	70934550	ID=Msa0747250-mRNA-1:exon:20968;Parent=Msa0747250-mRNA-1
chr5_1	exon	70941648	70941715	70941648	ID=Msa0747250-mRNA-1:exon:20969;Parent=Msa0747250-mRNA-1
chr5_1	five_prime_UTR	70930354	70930517	70930354	ID=Msa0747250-mRNA-1:five_prime_utr;Parent=Msa0747250-mRNA-1
chr5_1	five_prime_UTR	70930540	70930596	70930540	ID=Msa0747250-mRNA-1:five_prime_utr;Parent=Msa0747250-mRNA-1
chr5_1	CDS	70930597	70930713	70930597	ID=Msa0747250-mRNA-1:cds;Parent=Msa0747250-mRNA-1
chr5_1	CDS	70930830	70930946	70930830	ID=Msa0747250-mRNA-1:cds;Parent=Msa0747250-mRNA-1
chr5_1	CDS	70931391	70931498	70931391	ID=Msa0747250-mRNA-1:cds;Parent=Msa0747250-mRNA-1
chr5_1	CDS	70931716	70931907	70931716	ID=Msa0747250-mRNA-1:cds;Parent=Msa0747250-mRNA-1
chr5_1	CDS	70932014	70932205	70932014	ID=Msa0747250-mRNA-1:cds;Parent=Msa0747250-mRNA-1
chr5_1	CDS	70932622	70932740	70932622	ID=Msa0747250-mRNA-1:cds;Parent=Msa0747250-mRNA-1
chr5_1	CDS	70932904	70932991	70932904	ID=Msa0747250-mRNA-1:cds;Parent=Msa0747250-mRNA-1
chr5_1	CDS	70933300	70933419	70933300	ID=Msa0747250-mRNA-1:cds;Parent=Msa0747250-mRNA-1
chr5_1	CDS	70933509	70933649	70933509	ID=Msa0747250-mRNA-1:cds;Parent=Msa0747250-mRNA-1
chr5_1	CDS	70934371	70934448	70934371	ID=Msa0747250-mRNA-1:cds;Parent=Msa0747250-mRNA-1
chr5_1	three_prime_UTR	70934449	70934523	70934449	ID=Msa0747250-mRNA-1:three_prime_utr;Parent=Msa0747250-mRNA-1
chr5_1	three_prime_UTR	70934550	70934582	70934550	ID=Msa0747250-mRNA-1:three_prime_utr;Parent=Msa0747250-mRNA-1
chr5_1	three_prime_UTR	70941648	70941715	70941648	ID=Msa0747250-mRNA-1:three_prime_utr;Parent=Msa0747250-mRNA-1

Gene Sequence

>Msa0747250

ATGGCGAGCGCAATGGTAGAAGATGCTAACTTTGAAGATGACCAATTAGCGAATATGAGCACGGACGATATCGTCAGAGCTTCTCGTCTTCTCGACAACGAGATTCGCATCCTCAAGGAAGAGTCGCAGAGGACGAATCTGGAGTTGGAATCGTATAAAGAGAAGATTAAAGAGAATCAAGAGAAAATTAAGCTTAATAAACAATTACCCTATCTTGTTGGTAACATTGTTGAGATATTGGAAATGAATCCAGAAGACGAGGCTGAGGAAGATGGTGCCAATATTGATCTTGACTCACAAAGGAAGGGAAAATGTGTTGTGCTAAAAACATCTACTCGACAGACAATCTTTCTTCCAGTTGTTGGACTTGTTGACCCTGACAAGCTAAAACCTGGTGATCTTGTTGGTGTAAACAAAGATAGTTACTTAATCTTGGATACTCTGCCTTCTGAGTATGATTCTAGAGTTAAGGCCATGGAAGTTGATGAAAAGCCAACAGAGGACTACAATGACATTGGTGGATTAGAGAAGCAGATCCAAGAATTGGTTGAAGCCATCGTTTTGCCAATGACCCACAAAGAGCGCTTCCAGAAGTTAGGAATTCGTCCTCCCAAGGGAGTGCTCTTATATGGTCCACCAGGGACTGGGAAAACTTTAATGGCCCGTGCCTGTGCAGCCCAGACAAATGCCACTTTTCTGAAGTTAGCAGGCCCTCAGCTGGTCCAGATGTTCATAGGAGACGGAGCAAAACTTGTCCGTGATGCTTTCCAACTCGCAAAAGAAAAGTCACCATGCATTATATTTATAGATGAAATCGATGCAATTGGTACAAAGCGTTTTGATAGTGAAGTGAGTGGGGACAGGGAGGTTCAAAGAACCATGTTAGAGTTGCTCAATCAGCTTGATGGTTTTAGCAGTGATGACCGAATTAAGGTGATAGCAGCAACAAATCGTGCAGATATTCTTGATCCTGCCCTCATGCGTTCTGGTCGATTGGACCGCAAGATTGAGTTTCCTCACCCAACTGAAGAAGCAAGAGCTAGAATTCTGCAGATCCATTCAAGGAAGATGAATGTTCACCCAGATGTAAATTTTGAAGAACTAGCTCGGTCCACAGATGATTTCAATGGAGCACAACTGAAGGCTGTCTGTGTTGAGGCTGGCATGTTGGCTCTACGCCGTGATGCAACTGAGGTGAACCACGAGGACTTTAATGAAGGTATAATTCAAGTCCAAGCAAAGAAGAAAGCAAGCCTGAACTATTATGCTTAA

Protein sequence

>Msa0747250

MASAMVEDANFEDDQLANMSTDDIVRASRLLDNEIRILKEESQRTNLELESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA*