AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0180100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180100 MtrunA17_Chr1g0206061 99.713 349 1 0 1 349 1 349 0.0 717
Msa0180100 MtrunA17_Chr4g0041841 77.183 355 70 4 1 349 1 350 0.0 546
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180100 AT5G54770.1 79.429 350 67 3 4 349 1 349 0.0 560

Find 116 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAACATTGCTCTTATTT+TGG 0.112812 1_4:+67882459 None:intergenic
TCAAATGGGTGGTTATATTA+AGG 0.192291 1_4:+67882403 None:intergenic
TTGAATGTATGAAATTATTT+AGG 0.194191 1_4:-67882574 Msa0180100:three_prime_UTR
TCCATTGAAGAATGAGGATT+TGG 0.249214 1_4:+67884335 None:intergenic
CCAAAATAAGAGCAATGTTT+TGG 0.280850 1_4:-67882459 Msa0180100:three_prime_UTR
AAGTGAACCAGAGCTTATTT+TGG 0.293889 1_4:-67882798 Msa0180100:CDS
ATTTGTAGGGTCCAACATTT+GGG 0.296575 1_4:-67882910 Msa0180100:intron
GTTCCTGGTATGATTGTTAC+TGG 0.328065 1_4:-67883556 Msa0180100:CDS
TGTGGACATGATGGTCCTTT+TGG 0.329730 1_4:-67883694 Msa0180100:CDS
ATATCAAGTGCTTTCATTCC+AGG 0.329942 1_4:+67883622 None:intergenic
CAGTGGCCATGGATGCCATT+AGG 0.332705 1_4:+67884388 None:intergenic
TATTTGTAGGGTCCAACATT+TGG 0.333389 1_4:-67882911 Msa0180100:intron
CTATGTTTAGACAAACAAAT+TGG 0.337194 1_4:-67882618 Msa0180100:three_prime_UTR
AGTGGCCATGGATGCCATTA+GGG 0.340695 1_4:+67884389 None:intergenic
CATTTGGCATTGAAGGCATT+GGG 0.344159 1_4:-67882857 Msa0180100:CDS
TCTTCCTAAAATACCCCTAA+TGG 0.349026 1_4:-67884403 Msa0180100:exon
CGTCATCGTCGGTGCGGGTT+CGG 0.365933 1_4:-67884127 Msa0180100:CDS
ACCGAGCCATGCACCGCCAC+CGG 0.369028 1_4:+67884029 None:intergenic
ATGATGGCGATACTGATGTT+TGG 0.371853 1_4:+67884069 None:intergenic
AGCTGCACATTTGGCATTGA+AGG 0.371858 1_4:-67882864 Msa0180100:CDS
TTGCTGGTGTTGTTACAAAC+TGG 0.379842 1_4:-67883795 Msa0180100:CDS
CCGAGCCATGCACCGCCACC+GGG 0.388024 1_4:+67884030 None:intergenic
AGGACAGAAAGCTGCACATT+TGG 0.390045 1_4:-67882873 Msa0180100:CDS
GGTATGATTGATCATGTTCC+TGG 0.390693 1_4:-67883640 Msa0180100:CDS
TGTTGTTACAAACTGGGCTT+TGG 0.398106 1_4:-67883788 Msa0180100:CDS
TTGCATGGATCCTAATGTTA+TGG 0.401616 1_4:-67883740 Msa0180100:CDS
ACCTTAGCTTCCATAACATT+AGG 0.407939 1_4:+67883730 None:intergenic
CCATTGAAGAATGAGGATTT+GGG 0.411622 1_4:+67884336 None:intergenic
TGCTTAAATTTACAATTAAG+TGG 0.412014 1_4:-67882747 Msa0180100:exon
CAAATGGGTGGTTATATTAA+GGG 0.414130 1_4:+67882404 None:intergenic
AGAGACGATGGATTCTTTGA+TGG 0.420701 1_4:+67884206 None:intergenic
ACATTTGGCATTGAAGGCAT+TGG 0.420776 1_4:-67882858 Msa0180100:CDS
TTTGGGGCAATGATGATATC+AGG 0.421526 1_4:-67882893 Msa0180100:CDS
TGATGGCGATACTGATGTTT+GGG 0.421589 1_4:+67884070 None:intergenic
GGGAGGAACAATGCAATTGA+TGG 0.425697 1_4:-67882836 Msa0180100:CDS
TTGAAGGTGTTTATATCGTA+AGG 0.427759 1_4:+67884237 None:intergenic
CTTACAAGGGAAGTTGTTCC+TGG 0.428163 1_4:-67883571 Msa0180100:CDS
CATCTCTTCCTCGATGAAAT+CGG 0.434159 1_4:-67883967 Msa0180100:CDS
ATCGTCGGTGCGGGTTCGGC+CGG 0.440930 1_4:-67884123 Msa0180100:CDS
CAACCATGGCGGAGAAGAGC+TGG 0.441613 1_4:+67884004 None:intergenic
CCCGGTGGCGGTGCATGGCT+CGG 0.443680 1_4:-67884030 Msa0180100:CDS
GTTAAGAGGTTGAAGAGTAT+TGG 0.445858 1_4:-67883661 Msa0180100:CDS
ATGCTATTGTTCGTCTTACA+AGG 0.448172 1_4:-67883585 Msa0180100:CDS
CCCAAATCCTCATTCTTCAA+TGG 0.449478 1_4:-67884336 Msa0180100:CDS
GTGAAGGAAAACAGAGTTGC+TGG 0.450665 1_4:-67883811 Msa0180100:CDS
TCAGCCCCGGTGGCGGTGCA+TGG 0.454457 1_4:-67884035 Msa0180100:CDS
GGTGGATTTGATGATGGTGG+AGG 0.456715 1_4:+67884293 None:intergenic
AGAGTAGAGTGGAGTGGAAT+GGG 0.465452 1_4:+67884460 None:intergenic
ATCATCATTGCCCCAAATGT+TGG 0.477979 1_4:+67882899 None:intergenic
TTTGGCTTCTGCTGAATCAC+AGG 0.481383 1_4:-67882780 Msa0180100:CDS
GGATTTGGGAGTTGAAGAGA+GGG 0.481980 1_4:+67884350 None:intergenic
TGGTCTTCCATTGAAGAATG+AGG 0.487141 1_4:+67884329 None:intergenic
TTTCAATGCTGTTGCTGCTG+AGG 0.487900 1_4:-67883842 Msa0180100:CDS
GTGAGTTCTTGTGGACATGA+TGG 0.494717 1_4:-67883703 Msa0180100:CDS
TGGTATGATTGTTACTGGTA+TGG 0.499259 1_4:-67883551 Msa0180100:CDS
TCCTAATGTTATGGAAGCTA+AGG 0.499413 1_4:-67883731 Msa0180100:CDS
GACGTCGTCATCGTCGGTGC+GGG 0.500597 1_4:-67884132 Msa0180100:CDS
AGGATTTGGGAGTTGAAGAG+AGG 0.501201 1_4:+67884349 None:intergenic
TGCTGGTGTTGTTACAAACT+GGG 0.501512 1_4:-67883794 Msa0180100:CDS
TTGGTGCTACTGGTGTTAAG+AGG 0.502640 1_4:-67883675 Msa0180100:CDS
TGCAAGAAGCTTGCTCATGA+TGG 0.508423 1_4:+67883882 None:intergenic
GTGGAGGTGCGAGTAGCAAT+TGG 0.509453 1_4:+67884309 None:intergenic
TTCGTAAGCGCATGAAAGGC+CGG 0.510094 1_4:+67884104 None:intergenic
TTTGATGGGTGCGAATTTGA+AGG 0.512764 1_4:+67884221 None:intergenic
CAAGAGAAGAAAAGAGATGG+TGG 0.519159 1_4:-67882550 Msa0180100:three_prime_UTR
TCATCGAGGAAGAGATGAGC+TGG 0.521532 1_4:+67883973 None:intergenic
TGGCCAGCTCTTCTCCGCCA+TGG 0.524431 1_4:-67884007 Msa0180100:CDS
GAGACGATGGATTCTTTGAT+GGG 0.528361 1_4:+67884207 None:intergenic
CAATCCGTCAGCCCCGGTGG+CGG 0.528507 1_4:-67884042 Msa0180100:CDS
TGCACCGCCACCGGGGCTGA+CGG 0.530127 1_4:+67884038 None:intergenic
CCATGCAAGATTGTGTATCA+TGG 0.534946 1_4:+67883755 None:intergenic
ATGGAAGTTGCTGAAATTGA+TGG 0.535463 1_4:-67883532 Msa0180100:CDS
GAGAGTAGAGTGGAGTGGAA+TGG 0.535561 1_4:+67884459 None:intergenic
TGAAGGTGTTTATATCGTAA+GGG 0.535810 1_4:+67884238 None:intergenic
AATACCCCTAATGGCATCCA+TGG 0.539198 1_4:-67884394 Msa0180100:exon
ATTGAATTCAAACCACATGC+AGG 0.545966 1_4:+67882682 None:intergenic
CCATGATACACAATCTTGCA+TGG 0.547093 1_4:-67883755 Msa0180100:CDS
ATAATTCGTAAGCGCATGAA+AGG 0.548065 1_4:+67884100 None:intergenic
ATCGAACAATCCGTCAGCCC+CGG 0.549798 1_4:-67884048 Msa0180100:CDS
GCAGAAGCCAAAATAAGCTC+TGG 0.553231 1_4:+67882791 None:intergenic
TTAACACCAGTAGCACCAAA+AGG 0.554005 1_4:+67883679 None:intergenic
AGTGAGAGATGCAGTGGCCA+TGG 0.554618 1_4:+67884377 None:intergenic
AAGGTTGTTGTGAGTTCTTG+TGG 0.556055 1_4:-67883712 Msa0180100:CDS
GTTTAGACAAACAAATTGGA+AGG 0.559644 1_4:-67882614 Msa0180100:three_prime_UTR
GAAGGTGTTTATATCGTAAG+GGG 0.560183 1_4:+67884239 None:intergenic
GGACAAGAGAAGAAAAGAGA+TGG 0.566102 1_4:-67882553 Msa0180100:three_prime_UTR
GGTCATTTCACGAGAGACGA+TGG 0.571046 1_4:+67884194 None:intergenic
CATGTCTGTCATGTAACGAC+GGG 0.572019 1_4:+67884173 None:intergenic
GACGATGACGACGTCGGTGT+CGG 0.577296 1_4:+67884140 None:intergenic
TGCTGAGGATTTGATTGTGA+AGG 0.582701 1_4:-67883827 Msa0180100:CDS
GGAAGTAGTGAGAGATGCAG+TGG 0.583000 1_4:+67884371 None:intergenic
TTTGTGAGAGTAGAGTGGAG+TGG 0.583643 1_4:+67884454 None:intergenic
AATTGATGGTGCCCCAAGAA+TGG 0.586166 1_4:-67883518 Msa0180100:intron
TCACACAATATTTCACATAG+AGG 0.589966 1_4:-67884508 Msa0180100:five_prime_UTR
GACGACGTCGGTGTCGGCGT+AGG 0.595030 1_4:+67884146 None:intergenic
CGACGTCGTCATCGTCGGTG+CGG 0.596105 1_4:-67884133 Msa0180100:CDS
TGGCATTGAAGGCATTGGGG+AGG 0.601090 1_4:-67882853 Msa0180100:CDS
CGAGCCATGCACCGCCACCG+GGG 0.601463 1_4:+67884031 None:intergenic
AGCTGGTTTGCGAACAACCA+TGG 0.605597 1_4:+67883990 None:intergenic
GCTGACGGATTGTTCGATGA+TGG 0.605605 1_4:+67884053 None:intergenic
GACACCGACGTCGTCATCGT+CGG 0.606029 1_4:-67884138 Msa0180100:CDS
TGCTATTGTTCGTCTTACAA+GGG 0.611924 1_4:-67883584 Msa0180100:CDS
AAGGTGTTTATATCGTAAGG+GGG 0.614649 1_4:+67884240 None:intergenic
ATTTGGCATTGAAGGCATTG+GGG 0.623024 1_4:-67882856 Msa0180100:CDS
TGGTTATATTAAGGGACGGA+GGG 0.631588 1_4:+67882412 None:intergenic
GAACAATCCGTCAGCCCCGG+TGG 0.648251 1_4:-67884045 Msa0180100:CDS
GTGGCCATGGATGCCATTAG+GGG 0.656728 1_4:+67884390 None:intergenic
GTGGTTATATTAAGGGACGG+AGG 0.659362 1_4:+67882411 None:intergenic
TCATGTCTGTCATGTAACGA+CGG 0.663647 1_4:+67884172 None:intergenic
GGTGGCGGTGCATGGCTCGG+TGG 0.665089 1_4:-67884027 Msa0180100:CDS
ATACCAGTAACAATCATACC+AGG 0.680671 1_4:+67883553 None:intergenic
TGGGTGGTTATATTAAGGGA+CGG 0.682847 1_4:+67882408 None:intergenic
TTTGTAGGGTCCAACATTTG+GGG 0.712376 1_4:-67882909 Msa0180100:intron
ATTCGACACCGATTTCATCG+AGG 0.721644 1_4:+67883959 None:intergenic
CGCACCGACGATGACGACGT+CGG 0.729324 1_4:+67884134 None:intergenic
TGGTTTGCGAACAACCATGG+CGG 0.745776 1_4:+67883993 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTAATTTCAATTATTT+CGG - chr1_4:67883454-67883473 Msa0180100:intron 10.0%
!!! CTTTTTAATTTCAATTATTT+CGG - chr1_4:67883454-67883473 Msa0180100:intron 10.0%
!! AGCTAATAAAAACAATTTAT+AGG - chr1_4:67883732-67883751 Msa0180100:CDS 15.0%
!!! ATTAAACTTTTTATCTAAAG+AGG - chr1_4:67883870-67883889 Msa0180100:CDS 15.0%
!!! ATCTACAATTTTTTGTTTAT+AGG - chr1_4:67883900-67883919 Msa0180100:CDS 15.0%
!! TTGAATGTATGAAATTATTT+AGG - chr1_4:67884371-67884390 Msa0180100:CDS 15.0%
!! AGCTAATAAAAACAATTTAT+AGG - chr1_4:67883732-67883751 Msa0180100:CDS 15.0%
!!! ATTAAACTTTTTATCTAAAG+AGG - chr1_4:67883870-67883889 Msa0180100:CDS 15.0%
!!! ATCTACAATTTTTTGTTTAT+AGG - chr1_4:67883900-67883919 Msa0180100:CDS 15.0%
!! TTGAATGTATGAAATTATTT+AGG - chr1_4:67884371-67884390 Msa0180100:CDS 15.0%
!!! ATGTATCAACTATTTCTATA+AGG + chr1_4:67883629-67883648 None:intergenic 20.0%
!!! TTATAGAAATAGTTGATACA+TGG - chr1_4:67883628-67883647 Msa0180100:CDS 20.0%
!! ATTATATATATGCAAGTGTT+TGG + chr1_4:67883826-67883845 None:intergenic 20.0%
!! ACAAAAAATTGTAGATCATA+AGG + chr1_4:67883896-67883915 None:intergenic 20.0%
!! TGCTTAAATTTACAATTAAG+TGG - chr1_4:67884198-67884217 Msa0180100:CDS 20.0%
!!! ATGTATCAACTATTTCTATA+AGG + chr1_4:67883629-67883648 None:intergenic 20.0%
!!! TTATAGAAATAGTTGATACA+TGG - chr1_4:67883628-67883647 Msa0180100:CDS 20.0%
!! ATTATATATATGCAAGTGTT+TGG + chr1_4:67883826-67883845 None:intergenic 20.0%
!! ACAAAAAATTGTAGATCATA+AGG + chr1_4:67883896-67883915 None:intergenic 20.0%
!! TGCTTAAATTTACAATTAAG+TGG - chr1_4:67884198-67884217 Msa0180100:CDS 20.0%
! TTAAAAAGCTTACCATTCTT+GGG + chr1_4:67883442-67883461 None:intergenic 25.0%
! ATTAAAAAGCTTACCATTCT+TGG + chr1_4:67883443-67883462 None:intergenic 25.0%
!!! TTTTTGTTTATAGGCTTGTT+TGG - chr1_4:67883909-67883928 Msa0180100:CDS 25.0%
!!! TTTTGTTTATAGGCTTGTTT+GGG - chr1_4:67883910-67883929 Msa0180100:CDS 25.0%
!!! TATTTTTTTCAACTCCATGT+TGG - chr1_4:67883942-67883961 Msa0180100:CDS 25.0%
!!! TTTTGTTGGTGATATTTGTA+GGG - chr1_4:67884022-67884041 Msa0180100:CDS 25.0%
!!! GGATTTAGTTTTTAGTTGTT+TGG - chr1_4:67884219-67884238 Msa0180100:CDS 25.0%
! CTATGTTTAGACAAACAAAT+TGG - chr1_4:67884327-67884346 Msa0180100:CDS 25.0%
! GTCCAAGAAAAAAAAGAAAA+AGG - chr1_4:67884442-67884461 Msa0180100:five_prime_UTR 25.0%
!! TGCCTTTTTCTTTTTTTTCT+TGG + chr1_4:67884447-67884466 None:intergenic 25.0%
! TGAAAAATCTATGAAAGTGA+AGG + chr1_4:67882416-67882435 None:intergenic 25.0%
! TTAAAAAGCTTACCATTCTT+GGG + chr1_4:67883442-67883461 None:intergenic 25.0%
! ATTAAAAAGCTTACCATTCT+TGG + chr1_4:67883443-67883462 None:intergenic 25.0%
!!! TTTTTGTTTATAGGCTTGTT+TGG - chr1_4:67883909-67883928 Msa0180100:CDS 25.0%
!!! TTTTGTTTATAGGCTTGTTT+GGG - chr1_4:67883910-67883929 Msa0180100:CDS 25.0%
!!! TATTTTTTTCAACTCCATGT+TGG - chr1_4:67883942-67883961 Msa0180100:CDS 25.0%
!!! TTTTGTTGGTGATATTTGTA+GGG - chr1_4:67884022-67884041 Msa0180100:CDS 25.0%
!!! GGATTTAGTTTTTAGTTGTT+TGG - chr1_4:67884219-67884238 Msa0180100:CDS 25.0%
! CTATGTTTAGACAAACAAAT+TGG - chr1_4:67884327-67884346 Msa0180100:CDS 25.0%
! GTCCAAGAAAAAAAAGAAAA+AGG - chr1_4:67884442-67884461 Msa0180100:five_prime_UTR 25.0%
!! TGCCTTTTTCTTTTTTTTCT+TGG + chr1_4:67884447-67884466 None:intergenic 25.0%
TCACACAATATTTCACATAG+AGG - chr1_4:67882437-67882456 Msa0180100:three_prime_UTR 30.0%
! GTTTTATAAAGGAGATGATG+AGG + chr1_4:67882466-67882485 None:intergenic 30.0%
!! GGGTATTTTAGGAAGATAAA+AGG + chr1_4:67882538-67882557 None:intergenic 30.0%
!!! TAGTGACATGGTGATTTTTT+GGG + chr1_4:67882679-67882698 None:intergenic 30.0%
!!! TTAGTGACATGGTGATTTTT+TGG + chr1_4:67882680-67882699 None:intergenic 30.0%
!! TGAAGGTGTTTATATCGTAA+GGG + chr1_4:67882710-67882729 None:intergenic 30.0%
!! TTGAAGGTGTTTATATCGTA+AGG + chr1_4:67882711-67882730 None:intergenic 30.0%
! GCATTGAAAAGTTTTACGTT+AGG + chr1_4:67883092-67883111 None:intergenic 30.0%
TAAAAAGCTTACCATTCTTG+GGG + chr1_4:67883441-67883460 None:intergenic 30.0%
TGTGTTTGTGATATTGAGTT+AGG - chr1_4:67883498-67883517 Msa0180100:intron 30.0%
! TTTGTTTATAGGCTTGTTTG+GGG - chr1_4:67883911-67883930 Msa0180100:CDS 30.0%
GTTTGATTAAGATGTGCTAA+CGG - chr1_4:67883999-67884018 Msa0180100:CDS 30.0%
!!! GTTTTGTTGGTGATATTTGT+AGG - chr1_4:67884021-67884040 Msa0180100:CDS 30.0%
! TTAATTTTAGATCCTGCATG+TGG - chr1_4:67884251-67884270 Msa0180100:CDS 30.0%
GTTTAGACAAACAAATTGGA+AGG - chr1_4:67884331-67884350 Msa0180100:CDS 30.0%
!! CCAAAACATTGCTCTTATTT+TGG + chr1_4:67884489-67884508 None:intergenic 30.0%
! CCAAAATAAGAGCAATGTTT+TGG - chr1_4:67884486-67884505 Msa0180100:five_prime_UTR 30.0%
TCACACAATATTTCACATAG+AGG - chr1_4:67882437-67882456 Msa0180100:three_prime_UTR 30.0%
! GTTTTATAAAGGAGATGATG+AGG + chr1_4:67882466-67882485 None:intergenic 30.0%
!! GGGTATTTTAGGAAGATAAA+AGG + chr1_4:67882538-67882557 None:intergenic 30.0%
!!! TAGTGACATGGTGATTTTTT+GGG + chr1_4:67882679-67882698 None:intergenic 30.0%
!!! TTAGTGACATGGTGATTTTT+TGG + chr1_4:67882680-67882699 None:intergenic 30.0%
!! TGAAGGTGTTTATATCGTAA+GGG + chr1_4:67882710-67882729 None:intergenic 30.0%
!! TTGAAGGTGTTTATATCGTA+AGG + chr1_4:67882711-67882730 None:intergenic 30.0%
! GCATTGAAAAGTTTTACGTT+AGG + chr1_4:67883092-67883111 None:intergenic 30.0%
TAAAAAGCTTACCATTCTTG+GGG + chr1_4:67883441-67883460 None:intergenic 30.0%
TGTGTTTGTGATATTGAGTT+AGG - chr1_4:67883498-67883517 Msa0180100:intron 30.0%
! TTTGTTTATAGGCTTGTTTG+GGG - chr1_4:67883911-67883930 Msa0180100:CDS 30.0%
GTTTGATTAAGATGTGCTAA+CGG - chr1_4:67883999-67884018 Msa0180100:CDS 30.0%
!!! GTTTTGTTGGTGATATTTGT+AGG - chr1_4:67884021-67884040 Msa0180100:CDS 30.0%
! TTAATTTTAGATCCTGCATG+TGG - chr1_4:67884251-67884270 Msa0180100:CDS 30.0%
GTTTAGACAAACAAATTGGA+AGG - chr1_4:67884331-67884350 Msa0180100:CDS 30.0%
!! CCAAAACATTGCTCTTATTT+TGG + chr1_4:67884489-67884508 None:intergenic 30.0%
! CCAAAATAAGAGCAATGTTT+TGG - chr1_4:67884486-67884505 Msa0180100:five_prime_UTR 30.0%
!! GAGTGGAATGGGTTTTATAA+AGG + chr1_4:67882477-67882496 None:intergenic 35.0%
! ATACTTTTGTGAGAGTAGAG+TGG + chr1_4:67882499-67882518 None:intergenic 35.0%
TCTTCCTAAAATACCCCTAA+TGG - chr1_4:67882542-67882561 Msa0180100:three_prime_UTR 35.0%
CCATTGAAGAATGAGGATTT+GGG + chr1_4:67882612-67882631 None:intergenic 35.0%
TCCATTGAAGAATGAGGATT+TGG + chr1_4:67882613-67882632 None:intergenic 35.0%
!!! AGTGACATGGTGATTTTTTG+GGG + chr1_4:67882678-67882697 None:intergenic 35.0%
! AAGGTGTTTATATCGTAAGG+GGG + chr1_4:67882708-67882727 None:intergenic 35.0%
!! GAAGGTGTTTATATCGTAAG+GGG + chr1_4:67882709-67882728 None:intergenic 35.0%
ATAATTCGTAAGCGCATGAA+AGG + chr1_4:67882848-67882867 None:intergenic 35.0%
!! GATACTGATGTTTGGGTTTT+TGG + chr1_4:67882871-67882890 None:intergenic 35.0%
TTGCATGGATCCTAATGTTA+TGG - chr1_4:67883205-67883224 Msa0180100:intron 35.0%
TCCTAATGTTATGGAAGCTA+AGG - chr1_4:67883214-67883233 Msa0180100:intron 35.0%
ACCTTAGCTTCCATAACATT+AGG + chr1_4:67883218-67883237 None:intergenic 35.0%
! GTTAAGAGGTTGAAGAGTAT+TGG - chr1_4:67883284-67883303 Msa0180100:intron 35.0%
ATATCAAGTGCTTTCATTCC+AGG + chr1_4:67883326-67883345 None:intergenic 35.0%
ATGCTATTGTTCGTCTTACA+AGG - chr1_4:67883360-67883379 Msa0180100:intron 35.0%
TGCTATTGTTCGTCTTACAA+GGG - chr1_4:67883361-67883380 Msa0180100:intron 35.0%
ATACCAGTAACAATCATACC+AGG + chr1_4:67883395-67883414 None:intergenic 35.0%
TGGTATGATTGTTACTGGTA+TGG - chr1_4:67883394-67883413 Msa0180100:intron 35.0%
ATGGAAGTTGCTGAAATTGA+TGG - chr1_4:67883413-67883432 Msa0180100:intron 35.0%
! TTGTTTATAGGCTTGTTTGG+GGG - chr1_4:67883912-67883931 Msa0180100:CDS 35.0%
!! TTTTTCAACTCCATGTTGGT+TGG - chr1_4:67883946-67883965 Msa0180100:CDS 35.0%
!!! TGGTTGGTTTTGATGCAATT+TGG - chr1_4:67883962-67883981 Msa0180100:CDS 35.0%
GATGCAATTTGGAGATGATA+AGG - chr1_4:67883973-67883992 Msa0180100:CDS 35.0%
TATTTGTAGGGTCCAACATT+TGG - chr1_4:67884034-67884053 Msa0180100:CDS 35.0%
ATTTGTAGGGTCCAACATTT+GGG - chr1_4:67884035-67884054 Msa0180100:CDS 35.0%
! AAGTGAACCAGAGCTTATTT+TGG - chr1_4:67884147-67884166 Msa0180100:CDS 35.0%
ATTGAATTCAAACCACATGC+AGG + chr1_4:67884266-67884285 None:intergenic 35.0%
!! GAGTGGAATGGGTTTTATAA+AGG + chr1_4:67882477-67882496 None:intergenic 35.0%
! ATACTTTTGTGAGAGTAGAG+TGG + chr1_4:67882499-67882518 None:intergenic 35.0%
TCTTCCTAAAATACCCCTAA+TGG - chr1_4:67882542-67882561 Msa0180100:three_prime_UTR 35.0%
CCATTGAAGAATGAGGATTT+GGG + chr1_4:67882612-67882631 None:intergenic 35.0%
TCCATTGAAGAATGAGGATT+TGG + chr1_4:67882613-67882632 None:intergenic 35.0%
!!! AGTGACATGGTGATTTTTTG+GGG + chr1_4:67882678-67882697 None:intergenic 35.0%
! AAGGTGTTTATATCGTAAGG+GGG + chr1_4:67882708-67882727 None:intergenic 35.0%
!! GAAGGTGTTTATATCGTAAG+GGG + chr1_4:67882709-67882728 None:intergenic 35.0%
ATAATTCGTAAGCGCATGAA+AGG + chr1_4:67882848-67882867 None:intergenic 35.0%
!! GATACTGATGTTTGGGTTTT+TGG + chr1_4:67882871-67882890 None:intergenic 35.0%
TTGCATGGATCCTAATGTTA+TGG - chr1_4:67883205-67883224 Msa0180100:intron 35.0%
TCCTAATGTTATGGAAGCTA+AGG - chr1_4:67883214-67883233 Msa0180100:intron 35.0%
ACCTTAGCTTCCATAACATT+AGG + chr1_4:67883218-67883237 None:intergenic 35.0%
! GTTAAGAGGTTGAAGAGTAT+TGG - chr1_4:67883284-67883303 Msa0180100:intron 35.0%
ATATCAAGTGCTTTCATTCC+AGG + chr1_4:67883326-67883345 None:intergenic 35.0%
ATGCTATTGTTCGTCTTACA+AGG - chr1_4:67883360-67883379 Msa0180100:intron 35.0%
TGCTATTGTTCGTCTTACAA+GGG - chr1_4:67883361-67883380 Msa0180100:intron 35.0%
ATACCAGTAACAATCATACC+AGG + chr1_4:67883395-67883414 None:intergenic 35.0%
TGGTATGATTGTTACTGGTA+TGG - chr1_4:67883394-67883413 Msa0180100:intron 35.0%
ATGGAAGTTGCTGAAATTGA+TGG - chr1_4:67883413-67883432 Msa0180100:intron 35.0%
! TTGTTTATAGGCTTGTTTGG+GGG - chr1_4:67883912-67883931 Msa0180100:CDS 35.0%
!! TTTTTCAACTCCATGTTGGT+TGG - chr1_4:67883946-67883965 Msa0180100:CDS 35.0%
!!! TGGTTGGTTTTGATGCAATT+TGG - chr1_4:67883962-67883981 Msa0180100:CDS 35.0%
GATGCAATTTGGAGATGATA+AGG - chr1_4:67883973-67883992 Msa0180100:CDS 35.0%
TATTTGTAGGGTCCAACATT+TGG - chr1_4:67884034-67884053 Msa0180100:CDS 35.0%
ATTTGTAGGGTCCAACATTT+GGG - chr1_4:67884035-67884054 Msa0180100:CDS 35.0%
! AAGTGAACCAGAGCTTATTT+TGG - chr1_4:67884147-67884166 Msa0180100:CDS 35.0%
ATTGAATTCAAACCACATGC+AGG + chr1_4:67884266-67884285 None:intergenic 35.0%
!!! GATGCCATTAGGGGTATTTT+AGG + chr1_4:67882549-67882568 None:intergenic 40.0%
CCCAAATCCTCATTCTTCAA+TGG - chr1_4:67882609-67882628 Msa0180100:three_prime_UTR 40.0%
TGGTCTTCCATTGAAGAATG+AGG + chr1_4:67882619-67882638 None:intergenic 40.0%
!!! TGACATGGTGATTTTTTGGG+GGG + chr1_4:67882676-67882695 None:intergenic 40.0%
!!! GTGACATGGTGATTTTTTGG+GGG + chr1_4:67882677-67882696 None:intergenic 40.0%
! TTTGATGGGTGCGAATTTGA+AGG + chr1_4:67882727-67882746 None:intergenic 40.0%
! GAGACGATGGATTCTTTGAT+GGG + chr1_4:67882741-67882760 None:intergenic 40.0%
! AGAGACGATGGATTCTTTGA+TGG + chr1_4:67882742-67882761 None:intergenic 40.0%
TCATGTCTGTCATGTAACGA+CGG + chr1_4:67882776-67882795 None:intergenic 40.0%
! TGATGGCGATACTGATGTTT+GGG + chr1_4:67882878-67882897 None:intergenic 40.0%
! ATGATGGCGATACTGATGTT+TGG + chr1_4:67882879-67882898 None:intergenic 40.0%
CATCTCTTCCTCGATGAAAT+CGG - chr1_4:67882978-67882997 Msa0180100:intron 40.0%
TGCTGAGGATTTGATTGTGA+AGG - chr1_4:67883118-67883137 Msa0180100:intron 40.0%
!! TTGCTGGTGTTGTTACAAAC+TGG - chr1_4:67883150-67883169 Msa0180100:intron 40.0%
!! TGCTGGTGTTGTTACAAACT+GGG - chr1_4:67883151-67883170 Msa0180100:intron 40.0%
TGTTGTTACAAACTGGGCTT+TGG - chr1_4:67883157-67883176 Msa0180100:intron 40.0%
CCATGCAAGATTGTGTATCA+TGG + chr1_4:67883193-67883212 None:intergenic 40.0%
CCATGATACACAATCTTGCA+TGG - chr1_4:67883190-67883209 Msa0180100:intron 40.0%
AAGGTTGTTGTGAGTTCTTG+TGG - chr1_4:67883233-67883252 Msa0180100:intron 40.0%
TTAACACCAGTAGCACCAAA+AGG + chr1_4:67883269-67883288 None:intergenic 40.0%
GGTATGATTGATCATGTTCC+TGG - chr1_4:67883305-67883324 Msa0180100:intron 40.0%
GTTCCTGGTATGATTGTTAC+TGG - chr1_4:67883389-67883408 Msa0180100:intron 40.0%
! AGTTGATACATGGACCTGTT+TGG - chr1_4:67883638-67883657 Msa0180100:CDS 40.0%
ATACATGGACCTGTTTGGAT+TGG - chr1_4:67883643-67883662 Msa0180100:CDS 40.0%
!! ACCTGTTTGGATTGGCTATT+TGG - chr1_4:67883651-67883670 Msa0180100:CDS 40.0%
!! CCTGTTTGGATTGGCTATTT+GGG - chr1_4:67883652-67883671 Msa0180100:CDS 40.0%
! TGTTTATAGGCTTGTTTGGG+GGG - chr1_4:67883913-67883932 Msa0180100:CDS 40.0%
TGCATCAAAACCAACCAACA+TGG + chr1_4:67883959-67883978 None:intergenic 40.0%
!! AGATGTGCTAACGGTTTTGT+TGG - chr1_4:67884008-67884027 Msa0180100:CDS 40.0%
TTTGTAGGGTCCAACATTTG+GGG - chr1_4:67884036-67884055 Msa0180100:CDS 40.0%
ATCATCATTGCCCCAAATGT+TGG + chr1_4:67884049-67884068 None:intergenic 40.0%
! TTTGGGGCAATGATGATATC+AGG - chr1_4:67884052-67884071 Msa0180100:CDS 40.0%
! ACATTTGGCATTGAAGGCAT+TGG - chr1_4:67884087-67884106 Msa0180100:CDS 40.0%
!! CATTTGGCATTGAAGGCATT+GGG - chr1_4:67884088-67884107 Msa0180100:CDS 40.0%
!! ATTTGGCATTGAAGGCATTG+GGG - chr1_4:67884089-67884108 Msa0180100:CDS 40.0%
GGACAAGAGAAGAAAAGAGA+TGG - chr1_4:67884392-67884411 Msa0180100:exon 40.0%
CAAGAGAAGAAAAGAGATGG+TGG - chr1_4:67884395-67884414 Msa0180100:exon 40.0%
!!! GATGCCATTAGGGGTATTTT+AGG + chr1_4:67882549-67882568 None:intergenic 40.0%
CCCAAATCCTCATTCTTCAA+TGG - chr1_4:67882609-67882628 Msa0180100:three_prime_UTR 40.0%
TGGTCTTCCATTGAAGAATG+AGG + chr1_4:67882619-67882638 None:intergenic 40.0%
!!! TGACATGGTGATTTTTTGGG+GGG + chr1_4:67882676-67882695 None:intergenic 40.0%
!!! GTGACATGGTGATTTTTTGG+GGG + chr1_4:67882677-67882696 None:intergenic 40.0%
! TTTGATGGGTGCGAATTTGA+AGG + chr1_4:67882727-67882746 None:intergenic 40.0%
! GAGACGATGGATTCTTTGAT+GGG + chr1_4:67882741-67882760 None:intergenic 40.0%
! AGAGACGATGGATTCTTTGA+TGG + chr1_4:67882742-67882761 None:intergenic 40.0%
TCATGTCTGTCATGTAACGA+CGG + chr1_4:67882776-67882795 None:intergenic 40.0%
! TGATGGCGATACTGATGTTT+GGG + chr1_4:67882878-67882897 None:intergenic 40.0%
! ATGATGGCGATACTGATGTT+TGG + chr1_4:67882879-67882898 None:intergenic 40.0%
CATCTCTTCCTCGATGAAAT+CGG - chr1_4:67882978-67882997 Msa0180100:intron 40.0%
TGCTGAGGATTTGATTGTGA+AGG - chr1_4:67883118-67883137 Msa0180100:intron 40.0%
!! TTGCTGGTGTTGTTACAAAC+TGG - chr1_4:67883150-67883169 Msa0180100:intron 40.0%
!! TGCTGGTGTTGTTACAAACT+GGG - chr1_4:67883151-67883170 Msa0180100:intron 40.0%
TGTTGTTACAAACTGGGCTT+TGG - chr1_4:67883157-67883176 Msa0180100:intron 40.0%
CCATGCAAGATTGTGTATCA+TGG + chr1_4:67883193-67883212 None:intergenic 40.0%
CCATGATACACAATCTTGCA+TGG - chr1_4:67883190-67883209 Msa0180100:intron 40.0%
AAGGTTGTTGTGAGTTCTTG+TGG - chr1_4:67883233-67883252 Msa0180100:intron 40.0%
TTAACACCAGTAGCACCAAA+AGG + chr1_4:67883269-67883288 None:intergenic 40.0%
GGTATGATTGATCATGTTCC+TGG - chr1_4:67883305-67883324 Msa0180100:intron 40.0%
GTTCCTGGTATGATTGTTAC+TGG - chr1_4:67883389-67883408 Msa0180100:intron 40.0%
! AGTTGATACATGGACCTGTT+TGG - chr1_4:67883638-67883657 Msa0180100:CDS 40.0%
ATACATGGACCTGTTTGGAT+TGG - chr1_4:67883643-67883662 Msa0180100:CDS 40.0%
!! ACCTGTTTGGATTGGCTATT+TGG - chr1_4:67883651-67883670 Msa0180100:CDS 40.0%
!! CCTGTTTGGATTGGCTATTT+GGG - chr1_4:67883652-67883671 Msa0180100:CDS 40.0%
! TGTTTATAGGCTTGTTTGGG+GGG - chr1_4:67883913-67883932 Msa0180100:CDS 40.0%
TGCATCAAAACCAACCAACA+TGG + chr1_4:67883959-67883978 None:intergenic 40.0%
!! AGATGTGCTAACGGTTTTGT+TGG - chr1_4:67884008-67884027 Msa0180100:CDS 40.0%
TTTGTAGGGTCCAACATTTG+GGG - chr1_4:67884036-67884055 Msa0180100:CDS 40.0%
ATCATCATTGCCCCAAATGT+TGG + chr1_4:67884049-67884068 None:intergenic 40.0%
! TTTGGGGCAATGATGATATC+AGG - chr1_4:67884052-67884071 Msa0180100:CDS 40.0%
! ACATTTGGCATTGAAGGCAT+TGG - chr1_4:67884087-67884106 Msa0180100:CDS 40.0%
!! CATTTGGCATTGAAGGCATT+GGG - chr1_4:67884088-67884107 Msa0180100:CDS 40.0%
!! ATTTGGCATTGAAGGCATTG+GGG - chr1_4:67884089-67884108 Msa0180100:CDS 40.0%
GGACAAGAGAAGAAAAGAGA+TGG - chr1_4:67884392-67884411 Msa0180100:exon 40.0%
CAAGAGAAGAAAAGAGATGG+TGG - chr1_4:67884395-67884414 Msa0180100:exon 40.0%
AGAGTAGAGTGGAGTGGAAT+GGG + chr1_4:67882488-67882507 None:intergenic 45.0%
TTTGTGAGAGTAGAGTGGAG+TGG + chr1_4:67882494-67882513 None:intergenic 45.0%
AATACCCCTAATGGCATCCA+TGG - chr1_4:67882551-67882570 Msa0180100:three_prime_UTR 45.0%
GGATTTGGGAGTTGAAGAGA+GGG + chr1_4:67882598-67882617 None:intergenic 45.0%
AGGATTTGGGAGTTGAAGAG+AGG + chr1_4:67882599-67882618 None:intergenic 45.0%
GTTTATATCGTAAGGGGGTG+TGG + chr1_4:67882703-67882722 None:intergenic 45.0%
CATGTCTGTCATGTAACGAC+GGG + chr1_4:67882775-67882794 None:intergenic 45.0%
!! ATTCGACACCGATTTCATCG+AGG + chr1_4:67882989-67883008 None:intergenic 45.0%
! TGCAAGAAGCTTGCTCATGA+TGG + chr1_4:67883066-67883085 None:intergenic 45.0%
TTTCAATGCTGTTGCTGCTG+AGG - chr1_4:67883103-67883122 Msa0180100:intron 45.0%
GTGAAGGAAAACAGAGTTGC+TGG - chr1_4:67883134-67883153 Msa0180100:intron 45.0%
GTGAGTTCTTGTGGACATGA+TGG - chr1_4:67883242-67883261 Msa0180100:intron 45.0%
! TGTGGACATGATGGTCCTTT+TGG - chr1_4:67883251-67883270 Msa0180100:intron 45.0%
!! TTGGTGCTACTGGTGTTAAG+AGG - chr1_4:67883270-67883289 Msa0180100:intron 45.0%
CTTACAAGGGAAGTTGTTCC+TGG - chr1_4:67883374-67883393 Msa0180100:intron 45.0%
!! AATTGATGGTGCCCCAAGAA+TGG - chr1_4:67883427-67883446 Msa0180100:intron 45.0%
CCCAAATAGCCAATCCAAAC+AGG + chr1_4:67883655-67883674 None:intergenic 45.0%
AGGACAGAAAGCTGCACATT+TGG - chr1_4:67884072-67884091 Msa0180100:CDS 45.0%
! AGCTGCACATTTGGCATTGA+AGG - chr1_4:67884081-67884100 Msa0180100:CDS 45.0%
GGGAGGAACAATGCAATTGA+TGG - chr1_4:67884109-67884128 Msa0180100:CDS 45.0%
GCAGAAGCCAAAATAAGCTC+TGG + chr1_4:67884157-67884176 None:intergenic 45.0%
! TTTGGCTTCTGCTGAATCAC+AGG - chr1_4:67884165-67884184 Msa0180100:CDS 45.0%
AGAGTAGAGTGGAGTGGAAT+GGG + chr1_4:67882488-67882507 None:intergenic 45.0%
TTTGTGAGAGTAGAGTGGAG+TGG + chr1_4:67882494-67882513 None:intergenic 45.0%
AATACCCCTAATGGCATCCA+TGG - chr1_4:67882551-67882570 Msa0180100:three_prime_UTR 45.0%
GGATTTGGGAGTTGAAGAGA+GGG + chr1_4:67882598-67882617 None:intergenic 45.0%
AGGATTTGGGAGTTGAAGAG+AGG + chr1_4:67882599-67882618 None:intergenic 45.0%
GTTTATATCGTAAGGGGGTG+TGG + chr1_4:67882703-67882722 None:intergenic 45.0%
CATGTCTGTCATGTAACGAC+GGG + chr1_4:67882775-67882794 None:intergenic 45.0%
!! ATTCGACACCGATTTCATCG+AGG + chr1_4:67882989-67883008 None:intergenic 45.0%
! TGCAAGAAGCTTGCTCATGA+TGG + chr1_4:67883066-67883085 None:intergenic 45.0%
TTTCAATGCTGTTGCTGCTG+AGG - chr1_4:67883103-67883122 Msa0180100:intron 45.0%
GTGAAGGAAAACAGAGTTGC+TGG - chr1_4:67883134-67883153 Msa0180100:intron 45.0%
GTGAGTTCTTGTGGACATGA+TGG - chr1_4:67883242-67883261 Msa0180100:intron 45.0%
! TGTGGACATGATGGTCCTTT+TGG - chr1_4:67883251-67883270 Msa0180100:intron 45.0%
!! TTGGTGCTACTGGTGTTAAG+AGG - chr1_4:67883270-67883289 Msa0180100:intron 45.0%
CTTACAAGGGAAGTTGTTCC+TGG - chr1_4:67883374-67883393 Msa0180100:intron 45.0%
!! AATTGATGGTGCCCCAAGAA+TGG - chr1_4:67883427-67883446 Msa0180100:intron 45.0%
CCCAAATAGCCAATCCAAAC+AGG + chr1_4:67883655-67883674 None:intergenic 45.0%
AGGACAGAAAGCTGCACATT+TGG - chr1_4:67884072-67884091 Msa0180100:CDS 45.0%
! AGCTGCACATTTGGCATTGA+AGG - chr1_4:67884081-67884100 Msa0180100:CDS 45.0%
GGGAGGAACAATGCAATTGA+TGG - chr1_4:67884109-67884128 Msa0180100:CDS 45.0%
GCAGAAGCCAAAATAAGCTC+TGG + chr1_4:67884157-67884176 None:intergenic 45.0%
! TTTGGCTTCTGCTGAATCAC+AGG - chr1_4:67884165-67884184 Msa0180100:CDS 45.0%
GAGAGTAGAGTGGAGTGGAA+TGG + chr1_4:67882489-67882508 None:intergenic 50.0%
AGTGGCCATGGATGCCATTA+GGG + chr1_4:67882559-67882578 None:intergenic 50.0%
GGAAGTAGTGAGAGATGCAG+TGG + chr1_4:67882577-67882596 None:intergenic 50.0%
!! GGTGGATTTGATGATGGTGG+AGG + chr1_4:67882655-67882674 None:intergenic 50.0%
! TTGGGGGGTGGATTTGATGA+TGG + chr1_4:67882661-67882680 None:intergenic 50.0%
!!! CATGGTGATTTTTTGGGGGG+TGG + chr1_4:67882673-67882692 None:intergenic 50.0%
GGTCATTTCACGAGAGACGA+TGG + chr1_4:67882754-67882773 None:intergenic 50.0%
TTCGTAAGCGCATGAAAGGC+CGG + chr1_4:67882844-67882863 None:intergenic 50.0%
!! GCTGACGGATTGTTCGATGA+TGG + chr1_4:67882895-67882914 None:intergenic 50.0%
! TGGTTTGCGAACAACCATGG+CGG + chr1_4:67882955-67882974 None:intergenic 50.0%
!! AGCTGGTTTGCGAACAACCA+TGG + chr1_4:67882958-67882977 None:intergenic 50.0%
TCATCGAGGAAGAGATGAGC+TGG + chr1_4:67882975-67882994 None:intergenic 50.0%
!!! GATGGTCCTTTTGGTGCTAC+TGG - chr1_4:67883260-67883279 Msa0180100:intron 50.0%
GAGAGTAGAGTGGAGTGGAA+TGG + chr1_4:67882489-67882508 None:intergenic 50.0%
AGTGGCCATGGATGCCATTA+GGG + chr1_4:67882559-67882578 None:intergenic 50.0%
GGAAGTAGTGAGAGATGCAG+TGG + chr1_4:67882577-67882596 None:intergenic 50.0%
!! GGTGGATTTGATGATGGTGG+AGG + chr1_4:67882655-67882674 None:intergenic 50.0%
! TTGGGGGGTGGATTTGATGA+TGG + chr1_4:67882661-67882680 None:intergenic 50.0%
!!! CATGGTGATTTTTTGGGGGG+TGG + chr1_4:67882673-67882692 None:intergenic 50.0%
GGTCATTTCACGAGAGACGA+TGG + chr1_4:67882754-67882773 None:intergenic 50.0%
TTCGTAAGCGCATGAAAGGC+CGG + chr1_4:67882844-67882863 None:intergenic 50.0%
!! GCTGACGGATTGTTCGATGA+TGG + chr1_4:67882895-67882914 None:intergenic 50.0%
! TGGTTTGCGAACAACCATGG+CGG + chr1_4:67882955-67882974 None:intergenic 50.0%
!! AGCTGGTTTGCGAACAACCA+TGG + chr1_4:67882958-67882977 None:intergenic 50.0%
TCATCGAGGAAGAGATGAGC+TGG + chr1_4:67882975-67882994 None:intergenic 50.0%
!!! GATGGTCCTTTTGGTGCTAC+TGG - chr1_4:67883260-67883279 Msa0180100:intron 50.0%
GTGGCCATGGATGCCATTAG+GGG + chr1_4:67882558-67882577 None:intergenic 55.0%
CAGTGGCCATGGATGCCATT+AGG + chr1_4:67882560-67882579 None:intergenic 55.0%
AGTGAGAGATGCAGTGGCCA+TGG + chr1_4:67882571-67882590 None:intergenic 55.0%
! GTGGAGGTGCGAGTAGCAAT+TGG + chr1_4:67882639-67882658 None:intergenic 55.0%
!! GGGGGTGGATTTGATGATGG+TGG + chr1_4:67882658-67882677 None:intergenic 55.0%
! AGGGGGTGTGGTTAGTGACA+TGG + chr1_4:67882691-67882710 None:intergenic 55.0%
ATCGAACAATCCGTCAGCCC+CGG - chr1_4:67882897-67882916 Msa0180100:CDS 55.0%
!! TGGCATTGAAGGCATTGGGG+AGG - chr1_4:67884092-67884111 Msa0180100:CDS 55.0%
GTGGCCATGGATGCCATTAG+GGG + chr1_4:67882558-67882577 None:intergenic 55.0%
CAGTGGCCATGGATGCCATT+AGG + chr1_4:67882560-67882579 None:intergenic 55.0%
AGTGAGAGATGCAGTGGCCA+TGG + chr1_4:67882571-67882590 None:intergenic 55.0%
! GTGGAGGTGCGAGTAGCAAT+TGG + chr1_4:67882639-67882658 None:intergenic 55.0%
!! GGGGGTGGATTTGATGATGG+TGG + chr1_4:67882658-67882677 None:intergenic 55.0%
! AGGGGGTGTGGTTAGTGACA+TGG + chr1_4:67882691-67882710 None:intergenic 55.0%
ATCGAACAATCCGTCAGCCC+CGG - chr1_4:67882897-67882916 Msa0180100:CDS 55.0%
!! TGGCATTGAAGGCATTGGGG+AGG - chr1_4:67884092-67884111 Msa0180100:CDS 55.0%
GACGATGACGACGTCGGTGT+CGG + chr1_4:67882808-67882827 None:intergenic 60.0%
GACACCGACGTCGTCATCGT+CGG - chr1_4:67882807-67882826 Msa0180100:CDS 60.0%
! CAACCATGGCGGAGAAGAGC+TGG + chr1_4:67882944-67882963 None:intergenic 60.0%
GACGATGACGACGTCGGTGT+CGG + chr1_4:67882808-67882827 None:intergenic 60.0%
GACACCGACGTCGTCATCGT+CGG - chr1_4:67882807-67882826 Msa0180100:CDS 60.0%
! CAACCATGGCGGAGAAGAGC+TGG + chr1_4:67882944-67882963 None:intergenic 60.0%
! CGCACCGACGATGACGACGT+CGG + chr1_4:67882814-67882833 None:intergenic 65.0%
CGACGTCGTCATCGTCGGTG+CGG - chr1_4:67882812-67882831 Msa0180100:CDS 65.0%
GACGTCGTCATCGTCGGTGC+GGG - chr1_4:67882813-67882832 Msa0180100:CDS 65.0%
CGTCATCGTCGGTGCGGGTT+CGG - chr1_4:67882818-67882837 Msa0180100:CDS 65.0%
GAACAATCCGTCAGCCCCGG+TGG - chr1_4:67882900-67882919 Msa0180100:CDS 65.0%
TGGCCAGCTCTTCTCCGCCA+TGG - chr1_4:67882938-67882957 Msa0180100:intron 65.0%
! CGCACCGACGATGACGACGT+CGG + chr1_4:67882814-67882833 None:intergenic 65.0%
CGACGTCGTCATCGTCGGTG+CGG - chr1_4:67882812-67882831 Msa0180100:CDS 65.0%
GACGTCGTCATCGTCGGTGC+GGG - chr1_4:67882813-67882832 Msa0180100:CDS 65.0%
CGTCATCGTCGGTGCGGGTT+CGG - chr1_4:67882818-67882837 Msa0180100:CDS 65.0%
GAACAATCCGTCAGCCCCGG+TGG - chr1_4:67882900-67882919 Msa0180100:CDS 65.0%
TGGCCAGCTCTTCTCCGCCA+TGG - chr1_4:67882938-67882957 Msa0180100:intron 65.0%
!! GACGACGTCGGTGTCGGCGT+AGG + chr1_4:67882802-67882821 None:intergenic 70.0%
ATCGTCGGTGCGGGTTCGGC+CGG - chr1_4:67882822-67882841 Msa0180100:CDS 70.0%
CAATCCGTCAGCCCCGGTGG+CGG - chr1_4:67882903-67882922 Msa0180100:CDS 70.0%
ACCGAGCCATGCACCGCCAC+CGG + chr1_4:67882919-67882938 None:intergenic 70.0%
!! GACGACGTCGGTGTCGGCGT+AGG + chr1_4:67882802-67882821 None:intergenic 70.0%
ATCGTCGGTGCGGGTTCGGC+CGG - chr1_4:67882822-67882841 Msa0180100:CDS 70.0%
CAATCCGTCAGCCCCGGTGG+CGG - chr1_4:67882903-67882922 Msa0180100:CDS 70.0%
ACCGAGCCATGCACCGCCAC+CGG + chr1_4:67882919-67882938 None:intergenic 70.0%
TGCACCGCCACCGGGGCTGA+CGG + chr1_4:67882910-67882929 None:intergenic 75.0%
! TCAGCCCCGGTGGCGGTGCA+TGG - chr1_4:67882910-67882929 Msa0180100:intron 75.0%
CGAGCCATGCACCGCCACCG+GGG + chr1_4:67882917-67882936 None:intergenic 75.0%
CCGAGCCATGCACCGCCACC+GGG + chr1_4:67882918-67882937 None:intergenic 75.0%
! CCCGGTGGCGGTGCATGGCT+CGG - chr1_4:67882915-67882934 Msa0180100:intron 75.0%
! GGTGGCGGTGCATGGCTCGG+TGG - chr1_4:67882918-67882937 Msa0180100:intron 75.0%
TGCACCGCCACCGGGGCTGA+CGG + chr1_4:67882910-67882929 None:intergenic 75.0%
! TCAGCCCCGGTGGCGGTGCA+TGG - chr1_4:67882910-67882929 Msa0180100:intron 75.0%
CGAGCCATGCACCGCCACCG+GGG + chr1_4:67882917-67882936 None:intergenic 75.0%
CCGAGCCATGCACCGCCACC+GGG + chr1_4:67882918-67882937 None:intergenic 75.0%
! CCCGGTGGCGGTGCATGGCT+CGG - chr1_4:67882915-67882934 Msa0180100:intron 75.0%
! GGTGGCGGTGCATGGCTCGG+TGG - chr1_4:67882918-67882937 Msa0180100:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 67882414 67884553 67882414 ID=Msa0180100;Name=Msa0180100
chr1_4 mRNA 67882414 67884553 67882414 ID=Msa0180100-mRNA-1;Parent=Msa0180100;Name=Msa0180100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=147|1|1|1|1|1|2|349|349
chr1_4 exon 67882414 67882924 67882414 ID=Msa0180100-mRNA-1:exon:22352;Parent=Msa0180100-mRNA-1
chr1_4 exon 67883519 67884553 67883519 ID=Msa0180100-mRNA-1:exon:22351;Parent=Msa0180100-mRNA-1
chr1_4 five_prime_UTR 67884407 67884553 67884407 ID=Msa0180100-mRNA-1:five_prime_utr;Parent=Msa0180100-mRNA-1
chr1_4 CDS 67883519 67884406 67883519 ID=Msa0180100-mRNA-1:cds;Parent=Msa0180100-mRNA-1
chr1_4 CDS 67882763 67882924 67882763 ID=Msa0180100-mRNA-1:cds;Parent=Msa0180100-mRNA-1
chr1_4 three_prime_UTR 67882414 67882762 67882414 ID=Msa0180100-mRNA-1:three_prime_utr;Parent=Msa0180100-mRNA-1
Gene Sequence

>Msa0180100

ATGGCATCCATGGCCACTGCATCTCTCACTACTTCCCTCTCTTCAACTCCCAAATCCTCATTCTTCAATGGAAGACCAATTGCTACTCGCACCTCCACCATCATCAAATCCACCCCCCAAAAAATCACCATGTCACTAACCACACCCCCTTACGATATAAACACCTTCAAATTCGCACCCATCAAAGAATCCATCGTCTCTCGTGAAATGACCCGTCGTTACATGACAGACATGATCACCTACGCCGACACCGACGTCGTCATCGTCGGTGCGGGTTCGGCCGGCCTTTCATGCGCTTACGAATTATCCAAAAACCCAAACATCAGTATCGCCATCATCGAACAATCCGTCAGCCCCGGTGGCGGTGCATGGCTCGGTGGCCAGCTCTTCTCCGCCATGGTTGTTCGCAAACCAGCTCATCTCTTCCTCGATGAAATCGGTGTCGAATATGATGAACAAGAAGACTACGTTGTCATCAAACACGCTGCTCTATTCACTTCAACCATCATGAGCAAGCTTCTTGCAAAACCTAACGTAAAACTTTTCAATGCTGTTGCTGCTGAGGATTTGATTGTGAAGGAAAACAGAGTTGCTGGTGTTGTTACAAACTGGGCTTTGGTTTCGATGAACCATGATACACAATCTTGCATGGATCCTAATGTTATGGAAGCTAAGGTTGTTGTGAGTTCTTGTGGACATGATGGTCCTTTTGGTGCTACTGGTGTTAAGAGGTTGAAGAGTATTGGTATGATTGATCATGTTCCTGGAATGAAAGCACTTGATATGAATACTGCTGAAGATGCTATTGTTCGTCTTACAAGGGAAGTTGTTCCTGGTATGATTGTTACTGGTATGGAAGTTGCTGAAATTGATGGTGCCCCAAGAATGGGTCCAACATTTGGGGCAATGATGATATCAGGACAGAAAGCTGCACATTTGGCATTGAAGGCATTGGGGAGGAACAATGCAATTGATGGAACATGTGAATCTGCAAGTGAACCAGAGCTTATTTTGGCTTCTGCTGAATCACAGGACACTGTTGATGCTTAA

Protein sequence

>Msa0180100

MASMATASLTTSLSSTPKSSFFNGRPIATRTSTIIKSTPQKITMSLTTPPYDINTFKFAPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNISIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVEYDEQEDYVVIKHAALFTSTIMSKLLAKPNVKLFNAVAAEDLIVKENRVAGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRNNAIDGTCESASEPELILASAESQDTVDA*