AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0184510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184510 MtrunA17_Chr1g0206061 99.713 349 1 0 1 349 1 349 0.0 717
Msa0184510 MtrunA17_Chr4g0041841 77.183 355 70 4 1 349 1 350 0.0 546
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184510 AT5G54770.1 79.429 350 67 3 4 349 1 349 0.0 560

Find 122 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAACATTGCTCTTATTT+TGG 0.112812 1_4:-74130883 None:intergenic
ATTGAATGTATGAATTATTT+AGG 0.163045 1_4:+74130766 Msa0184510:three_prime_UTR
TCCATTGAAGAATGAGGATT+TGG 0.249214 1_4:-74129005 None:intergenic
CCAAAATAAGAGCAATGTTT+TGG 0.280850 1_4:+74130883 Msa0184510:three_prime_UTR
AAGTGAACCAGAGCTTATTT+TGG 0.293889 1_4:+74130541 Msa0184510:CDS
ATTTGTAGGGTCCAACATTT+GGG 0.296575 1_4:+74130429 Msa0184510:intron
TGCAATTGTAAAATACTATA+TGG 0.299824 1_4:-74130956 None:intergenic
TTTATATGAAATTTGAAATT+CGG 0.320378 1_4:+74131227 Msa0184510:three_prime_UTR
GTTCCTGGTATGATTGTTAC+TGG 0.328065 1_4:+74129784 Msa0184510:CDS
TGTGGACATGATGGTCCTTT+TGG 0.329730 1_4:+74129646 Msa0184510:CDS
ATATCAAGTGCTTTCATTCC+AGG 0.329942 1_4:-74129718 None:intergenic
CAGTGGCCATGGATGCCATT+AGG 0.332705 1_4:-74128952 None:intergenic
TATTTGTAGGGTCCAACATT+TGG 0.333389 1_4:+74130428 Msa0184510:intron
CTATGTTTAGACAAACAAAT+TGG 0.337194 1_4:+74130723 Msa0184510:three_prime_UTR
AGTGGCCATGGATGCCATTA+GGG 0.340695 1_4:-74128951 None:intergenic
TCTTCCTAAAATACCCCTAA+TGG 0.349026 1_4:+74128937 Msa0184510:exon
TTGATTCTATTGCTAAGAAT+GGG 0.355567 1_4:+74131135 Msa0184510:three_prime_UTR
AGGATCAATCTCTCATTATC+AGG 0.358531 1_4:-74131034 None:intergenic
CGTCATCGTCGGTGCGGGTT+CGG 0.365933 1_4:+74129213 Msa0184510:CDS
ACCGAGCCATGCACCGCCAC+CGG 0.369028 1_4:-74129311 None:intergenic
ATTGATTCTATTGCTAAGAA+TGG 0.371416 1_4:+74131134 Msa0184510:three_prime_UTR
ATGATGGCGATACTGATGTT+TGG 0.371853 1_4:-74129271 None:intergenic
AGCTGCACATTTGGCATTGA+AGG 0.371858 1_4:+74130475 Msa0184510:CDS
TAGATCCTTCATATGTGGTT+TGG 0.376501 1_4:+74130652 Msa0184510:three_prime_UTR
TTGCTGGTGTTGTTACAAAC+TGG 0.379842 1_4:+74129545 Msa0184510:CDS
CCGAGCCATGCACCGCCACC+GGG 0.388024 1_4:-74129310 None:intergenic
AGGACAGAAAGCTGCACATT+TGG 0.390045 1_4:+74130466 Msa0184510:CDS
GGTATGATTGATCATGTTCC+TGG 0.390693 1_4:+74129700 Msa0184510:CDS
TGTTGTTACAAACTGGGCTT+TGG 0.398106 1_4:+74129552 Msa0184510:CDS
TTGCATGGATCCTAATGTTA+TGG 0.401616 1_4:+74129600 Msa0184510:CDS
ACCTTAGCTTCCATAACATT+AGG 0.407939 1_4:-74129610 None:intergenic
CCATTGAAGAATGAGGATTT+GGG 0.411622 1_4:-74129004 None:intergenic
GGCAGGAACAATGCAATTGA+TGG 0.414535 1_4:+74130503 Msa0184510:CDS
CATTTGGCATTGAAGGCATT+GGG 0.419034 1_4:+74130482 Msa0184510:CDS
AGATTCTCATTCTTAGCAAT+AGG 0.419717 1_4:-74131054 None:intergenic
AGAGACGATGGATTCTTTGA+TGG 0.420701 1_4:-74129134 None:intergenic
TTTGGGGCAATGATGATATC+AGG 0.421526 1_4:+74130446 Msa0184510:CDS
TGATGGCGATACTGATGTTT+GGG 0.421589 1_4:-74129270 None:intergenic
TTGAAGGTGTTTATATCGTA+AGG 0.427759 1_4:-74129103 None:intergenic
CTTACAAGGGAAGTTGTTCC+TGG 0.428163 1_4:+74129769 Msa0184510:CDS
TGCTTAAGTTTACAATTAAG+TGG 0.428955 1_4:+74130592 Msa0184510:exon
ACATTTGGCATTGAAGGCAT+TGG 0.432123 1_4:+74130481 Msa0184510:CDS
CATCTCTTCCTCGATGAAAT+CGG 0.434159 1_4:+74129373 Msa0184510:CDS
CAACCATGGCGGAGAAGAGC+TGG 0.441613 1_4:-74129336 None:intergenic
CCCGGTGGCGGTGCATGGCT+CGG 0.443680 1_4:+74129310 Msa0184510:CDS
GTTAAGAGGTTGAAGAGTAT+TGG 0.445858 1_4:+74129679 Msa0184510:CDS
GTGGAGGTGCGGGTAGCAAT+TGG 0.448004 1_4:-74129031 None:intergenic
ATGCTATTGTTCGTCTTACA+AGG 0.448172 1_4:+74129755 Msa0184510:CDS
CCCAAATCCTCATTCTTCAA+TGG 0.449478 1_4:+74129004 Msa0184510:CDS
GTGAAGGAAAACAGAGTTGC+TGG 0.450665 1_4:+74129529 Msa0184510:CDS
TCAGCCCCGGTGGCGGTGCA+TGG 0.454457 1_4:+74129305 Msa0184510:CDS
ATCGTCGGTGCGGGTTCGGC+CGG 0.455969 1_4:+74129217 Msa0184510:CDS
GGTGGATTTGATGATGGTGG+AGG 0.456715 1_4:-74129047 None:intergenic
TTTGATGATGGTGGAGGTGC+GGG 0.464594 1_4:-74129041 None:intergenic
AGAGTAGAGTGGAGTGGAAT+GGG 0.465452 1_4:-74128882 None:intergenic
TTCGTAAGCGCATGAAAGAC+CGG 0.467780 1_4:-74129236 None:intergenic
ATCATCATTGCCCCAAATGT+TGG 0.477979 1_4:-74130440 None:intergenic
TTTGGCTTCTGCTGAATCAC+AGG 0.481383 1_4:+74130559 Msa0184510:CDS
GGATTTGGGAGTTGAAGAGA+GGG 0.481980 1_4:-74128990 None:intergenic
TGGTCTTCCATTGAAGAATG+AGG 0.487141 1_4:-74129011 None:intergenic
TTTCAATGCTGTTGCTGCTG+AGG 0.487900 1_4:+74129498 Msa0184510:CDS
GTGAGTTCTTGTGGACATGA+TGG 0.494717 1_4:+74129637 Msa0184510:CDS
TGGTATGATTGTTACTGGTA+TGG 0.499259 1_4:+74129789 Msa0184510:CDS
TCCTAATGTTATGGAAGCTA+AGG 0.499413 1_4:+74129609 Msa0184510:CDS
GACGTCGTCATCGTCGGTGC+GGG 0.500597 1_4:+74129208 Msa0184510:CDS
AGGATTTGGGAGTTGAAGAG+AGG 0.501201 1_4:-74128991 None:intergenic
TGCTGGTGTTGTTACAAACT+GGG 0.501512 1_4:+74129546 Msa0184510:CDS
TTGGTGCTACTGGTGTTAAG+AGG 0.502640 1_4:+74129665 Msa0184510:CDS
TGAATCCAAACCACATATGA+AGG 0.508339 1_4:-74130657 None:intergenic
TGCAAGAAGCTTGCTCATGA+TGG 0.508423 1_4:-74129458 None:intergenic
GCAAAATGTTTGCACATATG+TGG 0.509176 1_4:-74131191 None:intergenic
TTTGATGGGTGCGAATTTGA+AGG 0.512764 1_4:-74129119 None:intergenic
CAAGAGAAGAAAAGAGATGG+TGG 0.519159 1_4:+74130790 Msa0184510:three_prime_UTR
TGGCATTGAAGGCATTGGGC+AGG 0.520579 1_4:+74130486 Msa0184510:CDS
TCATCGAGGAAGAGATGAGC+TGG 0.521532 1_4:-74129367 None:intergenic
TGGCCAGCTCTTCTCCGCCA+TGG 0.524431 1_4:+74129333 Msa0184510:CDS
ATTTGATGATGGTGGAGGTG+CGG 0.526891 1_4:-74129042 None:intergenic
GAGACGATGGATTCTTTGAT+GGG 0.528361 1_4:-74129133 None:intergenic
CAATCCGTCAGCCCCGGTGG+CGG 0.528507 1_4:+74129298 Msa0184510:CDS
TGCACCGCCACCGGGGCTGA+CGG 0.530127 1_4:-74129302 None:intergenic
CCATGCAAGATTGTGTATCA+TGG 0.534946 1_4:-74129585 None:intergenic
ATGGAAGTTGCTGAAATTGA+TGG 0.535463 1_4:+74129808 Msa0184510:CDS
GAGAGTAGAGTGGAGTGGAA+TGG 0.535561 1_4:-74128883 None:intergenic
TGAAGGTGTTTATATCGTAA+GGG 0.535810 1_4:-74129102 None:intergenic
AATACCCCTAATGGCATCCA+TGG 0.539198 1_4:+74128946 Msa0184510:exon
CCATGATACACAATCTTGCA+TGG 0.547093 1_4:+74129585 Msa0184510:CDS
ATCGAACAATCCGTCAGCCC+CGG 0.549798 1_4:+74129292 Msa0184510:CDS
GCAGAAGCCAAAATAAGCTC+TGG 0.553231 1_4:-74130548 None:intergenic
TTAACACCAGTAGCACCAAA+AGG 0.554005 1_4:-74129661 None:intergenic
AGTGAGAGATGCAGTGGCCA+TGG 0.554618 1_4:-74128963 None:intergenic
AAGGTTGTTGTGAGTTCTTG+TGG 0.556055 1_4:+74129628 Msa0184510:CDS
GTTTAGACAAACAAATTGGA+AGG 0.559644 1_4:+74130727 Msa0184510:three_prime_UTR
GAAGGTGTTTATATCGTAAG+GGG 0.560183 1_4:-74129101 None:intergenic
GGACAAGAGAAGAAAAGAGA+TGG 0.566102 1_4:+74130787 Msa0184510:three_prime_UTR
CATATCTGTCATGTAACGAC+GGG 0.569723 1_4:-74129167 None:intergenic
GGTCATTTCACGAGAGACGA+TGG 0.571046 1_4:-74129146 None:intergenic
ACTACACTTGCTAATAAACT+AGG 0.571811 1_4:+74130990 Msa0184510:three_prime_UTR
GACGATGACGACGTCGGTGT+CGG 0.577296 1_4:-74129200 None:intergenic
TGCTGAGGATTTGATTGTGA+AGG 0.582701 1_4:+74129513 Msa0184510:CDS
GGAAGTAGTGAGAGATGCAG+TGG 0.583000 1_4:-74128969 None:intergenic
TTTGTGAGAGTAGAGTGGAG+TGG 0.583643 1_4:-74128888 None:intergenic
AATTGATGGTGCCCCAAGAA+TGG 0.586166 1_4:+74129822 Msa0184510:CDS
TTAGCTTCGAAAACATGATG+TGG 0.593910 1_4:-74131106 None:intergenic
GACGACGTCGGTGTCGGCGT+AGG 0.595030 1_4:-74129194 None:intergenic
CGACGTCGTCATCGTCGGTG+CGG 0.596105 1_4:+74129207 Msa0184510:CDS
CGAGCCATGCACCGCCACCG+GGG 0.601463 1_4:-74129309 None:intergenic
AGCTGGTTTGCGAACAACCA+TGG 0.605597 1_4:-74129350 None:intergenic
GCTGACGGATTGTTCGATGA+TGG 0.605605 1_4:-74129287 None:intergenic
GACACCGACGTCGTCATCGT+CGG 0.606029 1_4:+74129202 Msa0184510:CDS
TGCTATTGTTCGTCTTACAA+GGG 0.611924 1_4:+74129756 Msa0184510:CDS
AAGGTGTTTATATCGTAAGG+GGG 0.614649 1_4:-74129100 None:intergenic
GAACAATCCGTCAGCCCCGG+TGG 0.648251 1_4:+74129295 Msa0184510:CDS
TGATTCTATTGCTAAGAATG+GGG 0.650986 1_4:+74131136 Msa0184510:three_prime_UTR
GTGGCCATGGATGCCATTAG+GGG 0.656728 1_4:-74128950 None:intergenic
TCATATCTGTCATGTAACGA+CGG 0.659308 1_4:-74129168 None:intergenic
GGTGGCGGTGCATGGCTCGG+TGG 0.665089 1_4:+74129313 Msa0184510:CDS
ATACCAGTAACAATCATACC+AGG 0.680671 1_4:-74129787 None:intergenic
ATTATCAGGCTTGCTCACTG+AGG 0.708270 1_4:-74131020 None:intergenic
TTTGTAGGGTCCAACATTTG+GGG 0.712376 1_4:+74130430 Msa0184510:intron
ATTCGACACCGATTTCATCG+AGG 0.721644 1_4:-74129381 None:intergenic
CGCACCGACGATGACGACGT+CGG 0.729324 1_4:-74129206 None:intergenic
TGGTTTGCGAACAACCATGG+CGG 0.745776 1_4:-74129347 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTATTTCAATTATTT+TGG + chr1_4:74129849-74129868 Msa0184510:intron 10.0%
!!! TTTATATGAAATTTGAAATT+CGG + chr1_4:74131227-74131246 Msa0184510:three_prime_UTR 10.0%
!!! CTTTTTTATTTCAATTATTT+TGG + chr1_4:74129849-74129868 Msa0184510:intron 10.0%
!! AGCTAATAAAAACAATTTAT+AGG + chr1_4:74130127-74130146 Msa0184510:intron 15.0%
!!! ATTAAACTTTTTATCTAAAG+AGG + chr1_4:74130263-74130282 Msa0184510:intron 15.0%
!!! ATCTACAATTTTTTGTTTAT+AGG + chr1_4:74130293-74130312 Msa0184510:intron 15.0%
!! ATTGAATGTATGAATTATTT+AGG + chr1_4:74130766-74130785 Msa0184510:three_prime_UTR 15.0%
!! AGCTAATAAAAACAATTTAT+AGG + chr1_4:74130127-74130146 Msa0184510:intron 15.0%
!!! ATTAAACTTTTTATCTAAAG+AGG + chr1_4:74130263-74130282 Msa0184510:intron 15.0%
!!! ATCTACAATTTTTTGTTTAT+AGG + chr1_4:74130293-74130312 Msa0184510:intron 15.0%
!! ATTGAATGTATGAATTATTT+AGG + chr1_4:74130766-74130785 Msa0184510:three_prime_UTR 15.0%
!!! ATGTATCAACTATTTCTATA+AGG - chr1_4:74130024-74130043 None:intergenic 20.0%
!!! TTATAGAAATAGTTGATACA+TGG + chr1_4:74130023-74130042 Msa0184510:intron 20.0%
!! TTATTATATATGCAAGTGTT+TGG - chr1_4:74130221-74130240 None:intergenic 20.0%
!! ACAAAAAATTGTAGATCATA+AGG - chr1_4:74130289-74130308 None:intergenic 20.0%
!! TGCAATTGTAAAATACTATA+TGG - chr1_4:74130959-74130978 None:intergenic 20.0%
!!! TATAGTATTTTACAATTGCA+CGG + chr1_4:74130959-74130978 Msa0184510:three_prime_UTR 20.0%
!!! ATGTATCAACTATTTCTATA+AGG - chr1_4:74130024-74130043 None:intergenic 20.0%
!!! TTATAGAAATAGTTGATACA+TGG + chr1_4:74130023-74130042 Msa0184510:intron 20.0%
!! TTATTATATATGCAAGTGTT+TGG - chr1_4:74130221-74130240 None:intergenic 20.0%
!! ACAAAAAATTGTAGATCATA+AGG - chr1_4:74130289-74130308 None:intergenic 20.0%
!! TGCAATTGTAAAATACTATA+TGG - chr1_4:74130959-74130978 None:intergenic 20.0%
!!! TATAGTATTTTACAATTGCA+CGG + chr1_4:74130959-74130978 Msa0184510:three_prime_UTR 20.0%
! TAAAAAAGCTTACCATTCTT+GGG - chr1_4:74129837-74129856 None:intergenic 25.0%
! ATAAAAAAGCTTACCATTCT+TGG - chr1_4:74129838-74129857 None:intergenic 25.0%
!!! TTTTTGTTTATAGGCTTGTT+TGG + chr1_4:74130302-74130321 Msa0184510:intron 25.0%
!!! TTTTGTTTATAGGCTTGTTT+GGG + chr1_4:74130303-74130322 Msa0184510:intron 25.0%
!!! ATTTTTTTTCAACTCCATGT+TGG + chr1_4:74130336-74130355 Msa0184510:intron 25.0%
!!! TTTTGTTGGTGATATTTGTA+GGG + chr1_4:74130416-74130435 Msa0184510:intron 25.0%
! TGCTTAAGTTTACAATTAAG+TGG + chr1_4:74130592-74130611 Msa0184510:exon 25.0%
!!! GGATTTAGTTTTTAGTTGTT+TGG + chr1_4:74130613-74130632 Msa0184510:three_prime_UTR 25.0%
!! AATTTTAGATCCTTCATATG+TGG + chr1_4:74130647-74130666 Msa0184510:three_prime_UTR 25.0%
! CTATGTTTAGACAAACAAAT+TGG + chr1_4:74130723-74130742 Msa0184510:three_prime_UTR 25.0%
!! CCTTTTTCTTTTTCTTTTCT+TGG - chr1_4:74130842-74130861 None:intergenic 25.0%
! CCAAGAAAAGAAAAAGAAAA+AGG + chr1_4:74130839-74130858 Msa0184510:three_prime_UTR 25.0%
!! ATTGATTCTATTGCTAAGAA+TGG + chr1_4:74131134-74131153 Msa0184510:three_prime_UTR 25.0%
! TTGATTCTATTGCTAAGAAT+GGG + chr1_4:74131135-74131154 Msa0184510:three_prime_UTR 25.0%
! TAAAAAAGCTTACCATTCTT+GGG - chr1_4:74129837-74129856 None:intergenic 25.0%
! ATAAAAAAGCTTACCATTCT+TGG - chr1_4:74129838-74129857 None:intergenic 25.0%
!!! TTTTTGTTTATAGGCTTGTT+TGG + chr1_4:74130302-74130321 Msa0184510:intron 25.0%
!!! TTTTGTTTATAGGCTTGTTT+GGG + chr1_4:74130303-74130322 Msa0184510:intron 25.0%
!!! ATTTTTTTTCAACTCCATGT+TGG + chr1_4:74130336-74130355 Msa0184510:intron 25.0%
!!! TTTTGTTGGTGATATTTGTA+GGG + chr1_4:74130416-74130435 Msa0184510:intron 25.0%
! TGCTTAAGTTTACAATTAAG+TGG + chr1_4:74130592-74130611 Msa0184510:exon 25.0%
!!! GGATTTAGTTTTTAGTTGTT+TGG + chr1_4:74130613-74130632 Msa0184510:three_prime_UTR 25.0%
!! AATTTTAGATCCTTCATATG+TGG + chr1_4:74130647-74130666 Msa0184510:three_prime_UTR 25.0%
! CTATGTTTAGACAAACAAAT+TGG + chr1_4:74130723-74130742 Msa0184510:three_prime_UTR 25.0%
!! CCTTTTTCTTTTTCTTTTCT+TGG - chr1_4:74130842-74130861 None:intergenic 25.0%
! CCAAGAAAAGAAAAAGAAAA+AGG + chr1_4:74130839-74130858 Msa0184510:three_prime_UTR 25.0%
!! ATTGATTCTATTGCTAAGAA+TGG + chr1_4:74131134-74131153 Msa0184510:three_prime_UTR 25.0%
! TTGATTCTATTGCTAAGAAT+GGG + chr1_4:74131135-74131154 Msa0184510:three_prime_UTR 25.0%
! GTTTTATAAAGGAGATGATG+AGG - chr1_4:74128863-74128882 None:intergenic 30.0%
! TATATTTTGTGAGAGTAGAG+TGG - chr1_4:74128896-74128915 None:intergenic 30.0%
!!! TAGTGACATGGTGATTTTTT+GGG - chr1_4:74129074-74129093 None:intergenic 30.0%
!!! TTAGTGACATGGTGATTTTT+TGG - chr1_4:74129075-74129094 None:intergenic 30.0%
!! TGAAGGTGTTTATATCGTAA+GGG - chr1_4:74129105-74129124 None:intergenic 30.0%
!! TTGAAGGTGTTTATATCGTA+AGG - chr1_4:74129106-74129125 None:intergenic 30.0%
! GCATTGAAAAGTTTTACGTT+AGG - chr1_4:74129487-74129506 None:intergenic 30.0%
AAAAAAGCTTACCATTCTTG+GGG - chr1_4:74129836-74129855 None:intergenic 30.0%
TGTGTTTGTGATATTGAGTT+AGG + chr1_4:74129893-74129912 Msa0184510:intron 30.0%
! TTTGTTTATAGGCTTGTTTG+GGG + chr1_4:74130304-74130323 Msa0184510:intron 30.0%
GTTTGATTAAGATGTGCTAA+CGG + chr1_4:74130393-74130412 Msa0184510:intron 30.0%
!!! GTTTTGTTGGTGATATTTGT+AGG + chr1_4:74130415-74130434 Msa0184510:intron 30.0%
GTTTAGACAAACAAATTGGA+AGG + chr1_4:74130727-74130746 Msa0184510:three_prime_UTR 30.0%
!! CCAAAACATTGCTCTTATTT+TGG - chr1_4:74130886-74130905 None:intergenic 30.0%
! CCAAAATAAGAGCAATGTTT+TGG + chr1_4:74130883-74130902 Msa0184510:three_prime_UTR 30.0%
! ACTACACTTGCTAATAAACT+AGG + chr1_4:74130990-74131009 Msa0184510:three_prime_UTR 30.0%
AGATTCTCATTCTTAGCAAT+AGG - chr1_4:74131057-74131076 None:intergenic 30.0%
TGATTCTATTGCTAAGAATG+GGG + chr1_4:74131136-74131155 Msa0184510:three_prime_UTR 30.0%
! GTTTTATAAAGGAGATGATG+AGG - chr1_4:74128863-74128882 None:intergenic 30.0%
! TATATTTTGTGAGAGTAGAG+TGG - chr1_4:74128896-74128915 None:intergenic 30.0%
!!! TAGTGACATGGTGATTTTTT+GGG - chr1_4:74129074-74129093 None:intergenic 30.0%
!!! TTAGTGACATGGTGATTTTT+TGG - chr1_4:74129075-74129094 None:intergenic 30.0%
!! TGAAGGTGTTTATATCGTAA+GGG - chr1_4:74129105-74129124 None:intergenic 30.0%
!! TTGAAGGTGTTTATATCGTA+AGG - chr1_4:74129106-74129125 None:intergenic 30.0%
! GCATTGAAAAGTTTTACGTT+AGG - chr1_4:74129487-74129506 None:intergenic 30.0%
AAAAAAGCTTACCATTCTTG+GGG - chr1_4:74129836-74129855 None:intergenic 30.0%
TGTGTTTGTGATATTGAGTT+AGG + chr1_4:74129893-74129912 Msa0184510:intron 30.0%
! TTTGTTTATAGGCTTGTTTG+GGG + chr1_4:74130304-74130323 Msa0184510:intron 30.0%
GTTTGATTAAGATGTGCTAA+CGG + chr1_4:74130393-74130412 Msa0184510:intron 30.0%
!!! GTTTTGTTGGTGATATTTGT+AGG + chr1_4:74130415-74130434 Msa0184510:intron 30.0%
GTTTAGACAAACAAATTGGA+AGG + chr1_4:74130727-74130746 Msa0184510:three_prime_UTR 30.0%
!! CCAAAACATTGCTCTTATTT+TGG - chr1_4:74130886-74130905 None:intergenic 30.0%
! CCAAAATAAGAGCAATGTTT+TGG + chr1_4:74130883-74130902 Msa0184510:three_prime_UTR 30.0%
! ACTACACTTGCTAATAAACT+AGG + chr1_4:74130990-74131009 Msa0184510:three_prime_UTR 30.0%
AGATTCTCATTCTTAGCAAT+AGG - chr1_4:74131057-74131076 None:intergenic 30.0%
TGATTCTATTGCTAAGAATG+GGG + chr1_4:74131136-74131155 Msa0184510:three_prime_UTR 30.0%
!! GAGTGGAATGGGTTTTATAA+AGG - chr1_4:74128874-74128893 None:intergenic 35.0%
!! GGGTATTTTAGGAAGAGAAA+AGG - chr1_4:74128933-74128952 None:intergenic 35.0%
TCTTCCTAAAATACCCCTAA+TGG + chr1_4:74128937-74128956 Msa0184510:exon 35.0%
CCATTGAAGAATGAGGATTT+GGG - chr1_4:74129007-74129026 None:intergenic 35.0%
TCCATTGAAGAATGAGGATT+TGG - chr1_4:74129008-74129027 None:intergenic 35.0%
!!! AGTGACATGGTGATTTTTTG+GGG - chr1_4:74129073-74129092 None:intergenic 35.0%
! AAGGTGTTTATATCGTAAGG+GGG - chr1_4:74129103-74129122 None:intergenic 35.0%
!! GAAGGTGTTTATATCGTAAG+GGG - chr1_4:74129104-74129123 None:intergenic 35.0%
TCATATCTGTCATGTAACGA+CGG - chr1_4:74129171-74129190 None:intergenic 35.0%
!! GATACTGATGTTTGGGTTTT+TGG - chr1_4:74129266-74129285 None:intergenic 35.0%
TTGCATGGATCCTAATGTTA+TGG + chr1_4:74129600-74129619 Msa0184510:CDS 35.0%
TCCTAATGTTATGGAAGCTA+AGG + chr1_4:74129609-74129628 Msa0184510:CDS 35.0%
ACCTTAGCTTCCATAACATT+AGG - chr1_4:74129613-74129632 None:intergenic 35.0%
! GTTAAGAGGTTGAAGAGTAT+TGG + chr1_4:74129679-74129698 Msa0184510:CDS 35.0%
ATATCAAGTGCTTTCATTCC+AGG - chr1_4:74129721-74129740 None:intergenic 35.0%
ATGCTATTGTTCGTCTTACA+AGG + chr1_4:74129755-74129774 Msa0184510:CDS 35.0%
TGCTATTGTTCGTCTTACAA+GGG + chr1_4:74129756-74129775 Msa0184510:CDS 35.0%
ATACCAGTAACAATCATACC+AGG - chr1_4:74129790-74129809 None:intergenic 35.0%
TGGTATGATTGTTACTGGTA+TGG + chr1_4:74129789-74129808 Msa0184510:CDS 35.0%
ATGGAAGTTGCTGAAATTGA+TGG + chr1_4:74129808-74129827 Msa0184510:CDS 35.0%
! TTGTTTATAGGCTTGTTTGG+GGG + chr1_4:74130305-74130324 Msa0184510:intron 35.0%
!! TTTTTCAACTCCATGTTGGT+TGG + chr1_4:74130340-74130359 Msa0184510:intron 35.0%
!!! TGGTTGGTTTTGATGCAATT+TGG + chr1_4:74130356-74130375 Msa0184510:intron 35.0%
!! GATGCAATTTGGTGATGATA+AGG + chr1_4:74130367-74130386 Msa0184510:intron 35.0%
TATTTGTAGGGTCCAACATT+TGG + chr1_4:74130428-74130447 Msa0184510:intron 35.0%
ATTTGTAGGGTCCAACATTT+GGG + chr1_4:74130429-74130448 Msa0184510:intron 35.0%
! AAGTGAACCAGAGCTTATTT+TGG + chr1_4:74130541-74130560 Msa0184510:CDS 35.0%
TAGATCCTTCATATGTGGTT+TGG + chr1_4:74130652-74130671 Msa0184510:three_prime_UTR 35.0%
TGAATCCAAACCACATATGA+AGG - chr1_4:74130660-74130679 None:intergenic 35.0%
! AGTATTTTACAATTGCACGG+TGG + chr1_4:74130962-74130981 Msa0184510:three_prime_UTR 35.0%
! GTATTTTACAATTGCACGGT+GGG + chr1_4:74130963-74130982 Msa0184510:three_prime_UTR 35.0%
! TATTTTACAATTGCACGGTG+GGG + chr1_4:74130964-74130983 Msa0184510:three_prime_UTR 35.0%
AGGATCAATCTCTCATTATC+AGG - chr1_4:74131037-74131056 None:intergenic 35.0%
TTAGCTTCGAAAACATGATG+TGG - chr1_4:74131109-74131128 None:intergenic 35.0%
GCAAAATGTTTGCACATATG+TGG - chr1_4:74131194-74131213 None:intergenic 35.0%
!! GAGTGGAATGGGTTTTATAA+AGG - chr1_4:74128874-74128893 None:intergenic 35.0%
!! GGGTATTTTAGGAAGAGAAA+AGG - chr1_4:74128933-74128952 None:intergenic 35.0%
TCTTCCTAAAATACCCCTAA+TGG + chr1_4:74128937-74128956 Msa0184510:exon 35.0%
CCATTGAAGAATGAGGATTT+GGG - chr1_4:74129007-74129026 None:intergenic 35.0%
TCCATTGAAGAATGAGGATT+TGG - chr1_4:74129008-74129027 None:intergenic 35.0%
!!! AGTGACATGGTGATTTTTTG+GGG - chr1_4:74129073-74129092 None:intergenic 35.0%
! AAGGTGTTTATATCGTAAGG+GGG - chr1_4:74129103-74129122 None:intergenic 35.0%
!! GAAGGTGTTTATATCGTAAG+GGG - chr1_4:74129104-74129123 None:intergenic 35.0%
TCATATCTGTCATGTAACGA+CGG - chr1_4:74129171-74129190 None:intergenic 35.0%
!! GATACTGATGTTTGGGTTTT+TGG - chr1_4:74129266-74129285 None:intergenic 35.0%
TTGCATGGATCCTAATGTTA+TGG + chr1_4:74129600-74129619 Msa0184510:CDS 35.0%
TCCTAATGTTATGGAAGCTA+AGG + chr1_4:74129609-74129628 Msa0184510:CDS 35.0%
ACCTTAGCTTCCATAACATT+AGG - chr1_4:74129613-74129632 None:intergenic 35.0%
! GTTAAGAGGTTGAAGAGTAT+TGG + chr1_4:74129679-74129698 Msa0184510:CDS 35.0%
ATATCAAGTGCTTTCATTCC+AGG - chr1_4:74129721-74129740 None:intergenic 35.0%
ATGCTATTGTTCGTCTTACA+AGG + chr1_4:74129755-74129774 Msa0184510:CDS 35.0%
TGCTATTGTTCGTCTTACAA+GGG + chr1_4:74129756-74129775 Msa0184510:CDS 35.0%
ATACCAGTAACAATCATACC+AGG - chr1_4:74129790-74129809 None:intergenic 35.0%
TGGTATGATTGTTACTGGTA+TGG + chr1_4:74129789-74129808 Msa0184510:CDS 35.0%
ATGGAAGTTGCTGAAATTGA+TGG + chr1_4:74129808-74129827 Msa0184510:CDS 35.0%
! TTGTTTATAGGCTTGTTTGG+GGG + chr1_4:74130305-74130324 Msa0184510:intron 35.0%
!! TTTTTCAACTCCATGTTGGT+TGG + chr1_4:74130340-74130359 Msa0184510:intron 35.0%
!!! TGGTTGGTTTTGATGCAATT+TGG + chr1_4:74130356-74130375 Msa0184510:intron 35.0%
!! GATGCAATTTGGTGATGATA+AGG + chr1_4:74130367-74130386 Msa0184510:intron 35.0%
TATTTGTAGGGTCCAACATT+TGG + chr1_4:74130428-74130447 Msa0184510:intron 35.0%
ATTTGTAGGGTCCAACATTT+GGG + chr1_4:74130429-74130448 Msa0184510:intron 35.0%
! AAGTGAACCAGAGCTTATTT+TGG + chr1_4:74130541-74130560 Msa0184510:CDS 35.0%
TAGATCCTTCATATGTGGTT+TGG + chr1_4:74130652-74130671 Msa0184510:three_prime_UTR 35.0%
TGAATCCAAACCACATATGA+AGG - chr1_4:74130660-74130679 None:intergenic 35.0%
! AGTATTTTACAATTGCACGG+TGG + chr1_4:74130962-74130981 Msa0184510:three_prime_UTR 35.0%
! GTATTTTACAATTGCACGGT+GGG + chr1_4:74130963-74130982 Msa0184510:three_prime_UTR 35.0%
! TATTTTACAATTGCACGGTG+GGG + chr1_4:74130964-74130983 Msa0184510:three_prime_UTR 35.0%
AGGATCAATCTCTCATTATC+AGG - chr1_4:74131037-74131056 None:intergenic 35.0%
TTAGCTTCGAAAACATGATG+TGG - chr1_4:74131109-74131128 None:intergenic 35.0%
GCAAAATGTTTGCACATATG+TGG - chr1_4:74131194-74131213 None:intergenic 35.0%
!!! GATGCCATTAGGGGTATTTT+AGG - chr1_4:74128944-74128963 None:intergenic 40.0%
CCCAAATCCTCATTCTTCAA+TGG + chr1_4:74129004-74129023 Msa0184510:CDS 40.0%
TGGTCTTCCATTGAAGAATG+AGG - chr1_4:74129014-74129033 None:intergenic 40.0%
!!! TGACATGGTGATTTTTTGGG+GGG - chr1_4:74129071-74129090 None:intergenic 40.0%
!!! GTGACATGGTGATTTTTTGG+GGG - chr1_4:74129072-74129091 None:intergenic 40.0%
! TTTGATGGGTGCGAATTTGA+AGG - chr1_4:74129122-74129141 None:intergenic 40.0%
! GAGACGATGGATTCTTTGAT+GGG - chr1_4:74129136-74129155 None:intergenic 40.0%
! AGAGACGATGGATTCTTTGA+TGG - chr1_4:74129137-74129156 None:intergenic 40.0%
CATATCTGTCATGTAACGAC+GGG - chr1_4:74129170-74129189 None:intergenic 40.0%
! TGATGGCGATACTGATGTTT+GGG - chr1_4:74129273-74129292 None:intergenic 40.0%
! ATGATGGCGATACTGATGTT+TGG - chr1_4:74129274-74129293 None:intergenic 40.0%
CATCTCTTCCTCGATGAAAT+CGG + chr1_4:74129373-74129392 Msa0184510:CDS 40.0%
TGCTGAGGATTTGATTGTGA+AGG + chr1_4:74129513-74129532 Msa0184510:CDS 40.0%
!! TTGCTGGTGTTGTTACAAAC+TGG + chr1_4:74129545-74129564 Msa0184510:CDS 40.0%
!! TGCTGGTGTTGTTACAAACT+GGG + chr1_4:74129546-74129565 Msa0184510:CDS 40.0%
TGTTGTTACAAACTGGGCTT+TGG + chr1_4:74129552-74129571 Msa0184510:CDS 40.0%
CCATGCAAGATTGTGTATCA+TGG - chr1_4:74129588-74129607 None:intergenic 40.0%
CCATGATACACAATCTTGCA+TGG + chr1_4:74129585-74129604 Msa0184510:CDS 40.0%
AAGGTTGTTGTGAGTTCTTG+TGG + chr1_4:74129628-74129647 Msa0184510:CDS 40.0%
TTAACACCAGTAGCACCAAA+AGG - chr1_4:74129664-74129683 None:intergenic 40.0%
GGTATGATTGATCATGTTCC+TGG + chr1_4:74129700-74129719 Msa0184510:CDS 40.0%
GTTCCTGGTATGATTGTTAC+TGG + chr1_4:74129784-74129803 Msa0184510:CDS 40.0%
! AGTTGATACATGGACCTGTT+TGG + chr1_4:74130033-74130052 Msa0184510:intron 40.0%
ATACATGGACCTGTTTGGAT+TGG + chr1_4:74130038-74130057 Msa0184510:intron 40.0%
!! ACCTGTTTGGATTGGCTATT+TGG + chr1_4:74130046-74130065 Msa0184510:intron 40.0%
!! CCTGTTTGGATTGGCTATTT+GGG + chr1_4:74130047-74130066 Msa0184510:intron 40.0%
! TGTTTATAGGCTTGTTTGGG+GGG + chr1_4:74130306-74130325 Msa0184510:intron 40.0%
TGCATCAAAACCAACCAACA+TGG - chr1_4:74130353-74130372 None:intergenic 40.0%
!! AGATGTGCTAACGGTTTTGT+TGG + chr1_4:74130402-74130421 Msa0184510:intron 40.0%
TTTGTAGGGTCCAACATTTG+GGG + chr1_4:74130430-74130449 Msa0184510:intron 40.0%
ATCATCATTGCCCCAAATGT+TGG - chr1_4:74130443-74130462 None:intergenic 40.0%
! TTTGGGGCAATGATGATATC+AGG + chr1_4:74130446-74130465 Msa0184510:CDS 40.0%
! ACATTTGGCATTGAAGGCAT+TGG + chr1_4:74130481-74130500 Msa0184510:CDS 40.0%
!! CATTTGGCATTGAAGGCATT+GGG + chr1_4:74130482-74130501 Msa0184510:CDS 40.0%
GGACAAGAGAAGAAAAGAGA+TGG + chr1_4:74130787-74130806 Msa0184510:three_prime_UTR 40.0%
CAAGAGAAGAAAAGAGATGG+TGG + chr1_4:74130790-74130809 Msa0184510:three_prime_UTR 40.0%
!!! GATGCCATTAGGGGTATTTT+AGG - chr1_4:74128944-74128963 None:intergenic 40.0%
CCCAAATCCTCATTCTTCAA+TGG + chr1_4:74129004-74129023 Msa0184510:CDS 40.0%
TGGTCTTCCATTGAAGAATG+AGG - chr1_4:74129014-74129033 None:intergenic 40.0%
!!! TGACATGGTGATTTTTTGGG+GGG - chr1_4:74129071-74129090 None:intergenic 40.0%
!!! GTGACATGGTGATTTTTTGG+GGG - chr1_4:74129072-74129091 None:intergenic 40.0%
! TTTGATGGGTGCGAATTTGA+AGG - chr1_4:74129122-74129141 None:intergenic 40.0%
! GAGACGATGGATTCTTTGAT+GGG - chr1_4:74129136-74129155 None:intergenic 40.0%
! AGAGACGATGGATTCTTTGA+TGG - chr1_4:74129137-74129156 None:intergenic 40.0%
CATATCTGTCATGTAACGAC+GGG - chr1_4:74129170-74129189 None:intergenic 40.0%
! TGATGGCGATACTGATGTTT+GGG - chr1_4:74129273-74129292 None:intergenic 40.0%
! ATGATGGCGATACTGATGTT+TGG - chr1_4:74129274-74129293 None:intergenic 40.0%
CATCTCTTCCTCGATGAAAT+CGG + chr1_4:74129373-74129392 Msa0184510:CDS 40.0%
TGCTGAGGATTTGATTGTGA+AGG + chr1_4:74129513-74129532 Msa0184510:CDS 40.0%
!! TTGCTGGTGTTGTTACAAAC+TGG + chr1_4:74129545-74129564 Msa0184510:CDS 40.0%
!! TGCTGGTGTTGTTACAAACT+GGG + chr1_4:74129546-74129565 Msa0184510:CDS 40.0%
TGTTGTTACAAACTGGGCTT+TGG + chr1_4:74129552-74129571 Msa0184510:CDS 40.0%
CCATGCAAGATTGTGTATCA+TGG - chr1_4:74129588-74129607 None:intergenic 40.0%
CCATGATACACAATCTTGCA+TGG + chr1_4:74129585-74129604 Msa0184510:CDS 40.0%
AAGGTTGTTGTGAGTTCTTG+TGG + chr1_4:74129628-74129647 Msa0184510:CDS 40.0%
TTAACACCAGTAGCACCAAA+AGG - chr1_4:74129664-74129683 None:intergenic 40.0%
GGTATGATTGATCATGTTCC+TGG + chr1_4:74129700-74129719 Msa0184510:CDS 40.0%
GTTCCTGGTATGATTGTTAC+TGG + chr1_4:74129784-74129803 Msa0184510:CDS 40.0%
! AGTTGATACATGGACCTGTT+TGG + chr1_4:74130033-74130052 Msa0184510:intron 40.0%
ATACATGGACCTGTTTGGAT+TGG + chr1_4:74130038-74130057 Msa0184510:intron 40.0%
!! ACCTGTTTGGATTGGCTATT+TGG + chr1_4:74130046-74130065 Msa0184510:intron 40.0%
!! CCTGTTTGGATTGGCTATTT+GGG + chr1_4:74130047-74130066 Msa0184510:intron 40.0%
! TGTTTATAGGCTTGTTTGGG+GGG + chr1_4:74130306-74130325 Msa0184510:intron 40.0%
TGCATCAAAACCAACCAACA+TGG - chr1_4:74130353-74130372 None:intergenic 40.0%
!! AGATGTGCTAACGGTTTTGT+TGG + chr1_4:74130402-74130421 Msa0184510:intron 40.0%
TTTGTAGGGTCCAACATTTG+GGG + chr1_4:74130430-74130449 Msa0184510:intron 40.0%
ATCATCATTGCCCCAAATGT+TGG - chr1_4:74130443-74130462 None:intergenic 40.0%
! TTTGGGGCAATGATGATATC+AGG + chr1_4:74130446-74130465 Msa0184510:CDS 40.0%
! ACATTTGGCATTGAAGGCAT+TGG + chr1_4:74130481-74130500 Msa0184510:CDS 40.0%
!! CATTTGGCATTGAAGGCATT+GGG + chr1_4:74130482-74130501 Msa0184510:CDS 40.0%
GGACAAGAGAAGAAAAGAGA+TGG + chr1_4:74130787-74130806 Msa0184510:three_prime_UTR 40.0%
CAAGAGAAGAAAAGAGATGG+TGG + chr1_4:74130790-74130809 Msa0184510:three_prime_UTR 40.0%
AGAGTAGAGTGGAGTGGAAT+GGG - chr1_4:74128885-74128904 None:intergenic 45.0%
TTTGTGAGAGTAGAGTGGAG+TGG - chr1_4:74128891-74128910 None:intergenic 45.0%
AATACCCCTAATGGCATCCA+TGG + chr1_4:74128946-74128965 Msa0184510:exon 45.0%
GGATTTGGGAGTTGAAGAGA+GGG - chr1_4:74128993-74129012 None:intergenic 45.0%
AGGATTTGGGAGTTGAAGAG+AGG - chr1_4:74128994-74129013 None:intergenic 45.0%
!! ATTTGATGATGGTGGAGGTG+CGG - chr1_4:74129045-74129064 None:intergenic 45.0%
GTTTATATCGTAAGGGGGTG+TGG - chr1_4:74129098-74129117 None:intergenic 45.0%
TTCGTAAGCGCATGAAAGAC+CGG - chr1_4:74129239-74129258 None:intergenic 45.0%
!! ATTCGACACCGATTTCATCG+AGG - chr1_4:74129384-74129403 None:intergenic 45.0%
! TGCAAGAAGCTTGCTCATGA+TGG - chr1_4:74129461-74129480 None:intergenic 45.0%
TTTCAATGCTGTTGCTGCTG+AGG + chr1_4:74129498-74129517 Msa0184510:CDS 45.0%
GTGAAGGAAAACAGAGTTGC+TGG + chr1_4:74129529-74129548 Msa0184510:CDS 45.0%
GTGAGTTCTTGTGGACATGA+TGG + chr1_4:74129637-74129656 Msa0184510:CDS 45.0%
! TGTGGACATGATGGTCCTTT+TGG + chr1_4:74129646-74129665 Msa0184510:CDS 45.0%
!! TTGGTGCTACTGGTGTTAAG+AGG + chr1_4:74129665-74129684 Msa0184510:CDS 45.0%
CTTACAAGGGAAGTTGTTCC+TGG + chr1_4:74129769-74129788 Msa0184510:CDS 45.0%
!! AATTGATGGTGCCCCAAGAA+TGG + chr1_4:74129822-74129841 Msa0184510:CDS 45.0%
CCCAAATAGCCAATCCAAAC+AGG - chr1_4:74130050-74130069 None:intergenic 45.0%
AGGACAGAAAGCTGCACATT+TGG + chr1_4:74130466-74130485 Msa0184510:CDS 45.0%
! AGCTGCACATTTGGCATTGA+AGG + chr1_4:74130475-74130494 Msa0184510:CDS 45.0%
GGCAGGAACAATGCAATTGA+TGG + chr1_4:74130503-74130522 Msa0184510:CDS 45.0%
GCAGAAGCCAAAATAAGCTC+TGG - chr1_4:74130551-74130570 None:intergenic 45.0%
! TTTGGCTTCTGCTGAATCAC+AGG + chr1_4:74130559-74130578 Msa0184510:CDS 45.0%
! ATTATCAGGCTTGCTCACTG+AGG - chr1_4:74131023-74131042 None:intergenic 45.0%
AGAGTAGAGTGGAGTGGAAT+GGG - chr1_4:74128885-74128904 None:intergenic 45.0%
TTTGTGAGAGTAGAGTGGAG+TGG - chr1_4:74128891-74128910 None:intergenic 45.0%
AATACCCCTAATGGCATCCA+TGG + chr1_4:74128946-74128965 Msa0184510:exon 45.0%
GGATTTGGGAGTTGAAGAGA+GGG - chr1_4:74128993-74129012 None:intergenic 45.0%
AGGATTTGGGAGTTGAAGAG+AGG - chr1_4:74128994-74129013 None:intergenic 45.0%
!! ATTTGATGATGGTGGAGGTG+CGG - chr1_4:74129045-74129064 None:intergenic 45.0%
GTTTATATCGTAAGGGGGTG+TGG - chr1_4:74129098-74129117 None:intergenic 45.0%
TTCGTAAGCGCATGAAAGAC+CGG - chr1_4:74129239-74129258 None:intergenic 45.0%
!! ATTCGACACCGATTTCATCG+AGG - chr1_4:74129384-74129403 None:intergenic 45.0%
! TGCAAGAAGCTTGCTCATGA+TGG - chr1_4:74129461-74129480 None:intergenic 45.0%
TTTCAATGCTGTTGCTGCTG+AGG + chr1_4:74129498-74129517 Msa0184510:CDS 45.0%
GTGAAGGAAAACAGAGTTGC+TGG + chr1_4:74129529-74129548 Msa0184510:CDS 45.0%
GTGAGTTCTTGTGGACATGA+TGG + chr1_4:74129637-74129656 Msa0184510:CDS 45.0%
! TGTGGACATGATGGTCCTTT+TGG + chr1_4:74129646-74129665 Msa0184510:CDS 45.0%
!! TTGGTGCTACTGGTGTTAAG+AGG + chr1_4:74129665-74129684 Msa0184510:CDS 45.0%
CTTACAAGGGAAGTTGTTCC+TGG + chr1_4:74129769-74129788 Msa0184510:CDS 45.0%
!! AATTGATGGTGCCCCAAGAA+TGG + chr1_4:74129822-74129841 Msa0184510:CDS 45.0%
CCCAAATAGCCAATCCAAAC+AGG - chr1_4:74130050-74130069 None:intergenic 45.0%
AGGACAGAAAGCTGCACATT+TGG + chr1_4:74130466-74130485 Msa0184510:CDS 45.0%
! AGCTGCACATTTGGCATTGA+AGG + chr1_4:74130475-74130494 Msa0184510:CDS 45.0%
GGCAGGAACAATGCAATTGA+TGG + chr1_4:74130503-74130522 Msa0184510:CDS 45.0%
GCAGAAGCCAAAATAAGCTC+TGG - chr1_4:74130551-74130570 None:intergenic 45.0%
! TTTGGCTTCTGCTGAATCAC+AGG + chr1_4:74130559-74130578 Msa0184510:CDS 45.0%
! ATTATCAGGCTTGCTCACTG+AGG - chr1_4:74131023-74131042 None:intergenic 45.0%
GAGAGTAGAGTGGAGTGGAA+TGG - chr1_4:74128886-74128905 None:intergenic 50.0%
AGTGGCCATGGATGCCATTA+GGG - chr1_4:74128954-74128973 None:intergenic 50.0%
GGAAGTAGTGAGAGATGCAG+TGG - chr1_4:74128972-74128991 None:intergenic 50.0%
!! TTTGATGATGGTGGAGGTGC+GGG - chr1_4:74129044-74129063 None:intergenic 50.0%
!! GGTGGATTTGATGATGGTGG+AGG - chr1_4:74129050-74129069 None:intergenic 50.0%
! TTGGGGGGTGGATTTGATGA+TGG - chr1_4:74129056-74129075 None:intergenic 50.0%
!!! CATGGTGATTTTTTGGGGGG+TGG - chr1_4:74129068-74129087 None:intergenic 50.0%
GGTCATTTCACGAGAGACGA+TGG - chr1_4:74129149-74129168 None:intergenic 50.0%
!! GCTGACGGATTGTTCGATGA+TGG - chr1_4:74129290-74129309 None:intergenic 50.0%
! TGGTTTGCGAACAACCATGG+CGG - chr1_4:74129350-74129369 None:intergenic 50.0%
!! AGCTGGTTTGCGAACAACCA+TGG - chr1_4:74129353-74129372 None:intergenic 50.0%
TCATCGAGGAAGAGATGAGC+TGG - chr1_4:74129370-74129389 None:intergenic 50.0%
!!! GATGGTCCTTTTGGTGCTAC+TGG + chr1_4:74129655-74129674 Msa0184510:CDS 50.0%
GAGAGTAGAGTGGAGTGGAA+TGG - chr1_4:74128886-74128905 None:intergenic 50.0%
AGTGGCCATGGATGCCATTA+GGG - chr1_4:74128954-74128973 None:intergenic 50.0%
GGAAGTAGTGAGAGATGCAG+TGG - chr1_4:74128972-74128991 None:intergenic 50.0%
!! TTTGATGATGGTGGAGGTGC+GGG - chr1_4:74129044-74129063 None:intergenic 50.0%
!! GGTGGATTTGATGATGGTGG+AGG - chr1_4:74129050-74129069 None:intergenic 50.0%
! TTGGGGGGTGGATTTGATGA+TGG - chr1_4:74129056-74129075 None:intergenic 50.0%
!!! CATGGTGATTTTTTGGGGGG+TGG - chr1_4:74129068-74129087 None:intergenic 50.0%
GGTCATTTCACGAGAGACGA+TGG - chr1_4:74129149-74129168 None:intergenic 50.0%
!! GCTGACGGATTGTTCGATGA+TGG - chr1_4:74129290-74129309 None:intergenic 50.0%
! TGGTTTGCGAACAACCATGG+CGG - chr1_4:74129350-74129369 None:intergenic 50.0%
!! AGCTGGTTTGCGAACAACCA+TGG - chr1_4:74129353-74129372 None:intergenic 50.0%
TCATCGAGGAAGAGATGAGC+TGG - chr1_4:74129370-74129389 None:intergenic 50.0%
!!! GATGGTCCTTTTGGTGCTAC+TGG + chr1_4:74129655-74129674 Msa0184510:CDS 50.0%
GTGGCCATGGATGCCATTAG+GGG - chr1_4:74128953-74128972 None:intergenic 55.0%
CAGTGGCCATGGATGCCATT+AGG - chr1_4:74128955-74128974 None:intergenic 55.0%
AGTGAGAGATGCAGTGGCCA+TGG - chr1_4:74128966-74128985 None:intergenic 55.0%
!! GGGGGTGGATTTGATGATGG+TGG - chr1_4:74129053-74129072 None:intergenic 55.0%
! AGGGGGTGTGGTTAGTGACA+TGG - chr1_4:74129086-74129105 None:intergenic 55.0%
ATCGAACAATCCGTCAGCCC+CGG + chr1_4:74129292-74129311 Msa0184510:CDS 55.0%
!! TGGCATTGAAGGCATTGGGC+AGG + chr1_4:74130486-74130505 Msa0184510:CDS 55.0%
GTGGCCATGGATGCCATTAG+GGG - chr1_4:74128953-74128972 None:intergenic 55.0%
CAGTGGCCATGGATGCCATT+AGG - chr1_4:74128955-74128974 None:intergenic 55.0%
AGTGAGAGATGCAGTGGCCA+TGG - chr1_4:74128966-74128985 None:intergenic 55.0%
!! GGGGGTGGATTTGATGATGG+TGG - chr1_4:74129053-74129072 None:intergenic 55.0%
! AGGGGGTGTGGTTAGTGACA+TGG - chr1_4:74129086-74129105 None:intergenic 55.0%
ATCGAACAATCCGTCAGCCC+CGG + chr1_4:74129292-74129311 Msa0184510:CDS 55.0%
!! TGGCATTGAAGGCATTGGGC+AGG + chr1_4:74130486-74130505 Msa0184510:CDS 55.0%
! GTGGAGGTGCGGGTAGCAAT+TGG - chr1_4:74129034-74129053 None:intergenic 60.0%
GACGATGACGACGTCGGTGT+CGG - chr1_4:74129203-74129222 None:intergenic 60.0%
GACACCGACGTCGTCATCGT+CGG + chr1_4:74129202-74129221 Msa0184510:CDS 60.0%
! CAACCATGGCGGAGAAGAGC+TGG - chr1_4:74129339-74129358 None:intergenic 60.0%
! GTGGAGGTGCGGGTAGCAAT+TGG - chr1_4:74129034-74129053 None:intergenic 60.0%
GACGATGACGACGTCGGTGT+CGG - chr1_4:74129203-74129222 None:intergenic 60.0%
GACACCGACGTCGTCATCGT+CGG + chr1_4:74129202-74129221 Msa0184510:CDS 60.0%
! CAACCATGGCGGAGAAGAGC+TGG - chr1_4:74129339-74129358 None:intergenic 60.0%
! CGCACCGACGATGACGACGT+CGG - chr1_4:74129209-74129228 None:intergenic 65.0%
CGACGTCGTCATCGTCGGTG+CGG + chr1_4:74129207-74129226 Msa0184510:CDS 65.0%
GACGTCGTCATCGTCGGTGC+GGG + chr1_4:74129208-74129227 Msa0184510:CDS 65.0%
CGTCATCGTCGGTGCGGGTT+CGG + chr1_4:74129213-74129232 Msa0184510:CDS 65.0%
GAACAATCCGTCAGCCCCGG+TGG + chr1_4:74129295-74129314 Msa0184510:CDS 65.0%
TGGCCAGCTCTTCTCCGCCA+TGG + chr1_4:74129333-74129352 Msa0184510:CDS 65.0%
! CGCACCGACGATGACGACGT+CGG - chr1_4:74129209-74129228 None:intergenic 65.0%
CGACGTCGTCATCGTCGGTG+CGG + chr1_4:74129207-74129226 Msa0184510:CDS 65.0%
GACGTCGTCATCGTCGGTGC+GGG + chr1_4:74129208-74129227 Msa0184510:CDS 65.0%
CGTCATCGTCGGTGCGGGTT+CGG + chr1_4:74129213-74129232 Msa0184510:CDS 65.0%
GAACAATCCGTCAGCCCCGG+TGG + chr1_4:74129295-74129314 Msa0184510:CDS 65.0%
TGGCCAGCTCTTCTCCGCCA+TGG + chr1_4:74129333-74129352 Msa0184510:CDS 65.0%
!! GACGACGTCGGTGTCGGCGT+AGG - chr1_4:74129197-74129216 None:intergenic 70.0%
ATCGTCGGTGCGGGTTCGGC+CGG + chr1_4:74129217-74129236 Msa0184510:CDS 70.0%
CAATCCGTCAGCCCCGGTGG+CGG + chr1_4:74129298-74129317 Msa0184510:CDS 70.0%
ACCGAGCCATGCACCGCCAC+CGG - chr1_4:74129314-74129333 None:intergenic 70.0%
!! GACGACGTCGGTGTCGGCGT+AGG - chr1_4:74129197-74129216 None:intergenic 70.0%
ATCGTCGGTGCGGGTTCGGC+CGG + chr1_4:74129217-74129236 Msa0184510:CDS 70.0%
CAATCCGTCAGCCCCGGTGG+CGG + chr1_4:74129298-74129317 Msa0184510:CDS 70.0%
ACCGAGCCATGCACCGCCAC+CGG - chr1_4:74129314-74129333 None:intergenic 70.0%
TGCACCGCCACCGGGGCTGA+CGG - chr1_4:74129305-74129324 None:intergenic 75.0%
! TCAGCCCCGGTGGCGGTGCA+TGG + chr1_4:74129305-74129324 Msa0184510:CDS 75.0%
CGAGCCATGCACCGCCACCG+GGG - chr1_4:74129312-74129331 None:intergenic 75.0%
CCGAGCCATGCACCGCCACC+GGG - chr1_4:74129313-74129332 None:intergenic 75.0%
! CCCGGTGGCGGTGCATGGCT+CGG + chr1_4:74129310-74129329 Msa0184510:CDS 75.0%
! GGTGGCGGTGCATGGCTCGG+TGG + chr1_4:74129313-74129332 Msa0184510:CDS 75.0%
TGCACCGCCACCGGGGCTGA+CGG - chr1_4:74129305-74129324 None:intergenic 75.0%
! TCAGCCCCGGTGGCGGTGCA+TGG + chr1_4:74129305-74129324 Msa0184510:CDS 75.0%
CGAGCCATGCACCGCCACCG+GGG - chr1_4:74129312-74129331 None:intergenic 75.0%
CCGAGCCATGCACCGCCACC+GGG - chr1_4:74129313-74129332 None:intergenic 75.0%
! CCCGGTGGCGGTGCATGGCT+CGG + chr1_4:74129310-74129329 Msa0184510:CDS 75.0%
! GGTGGCGGTGCATGGCTCGG+TGG + chr1_4:74129313-74129332 Msa0184510:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 74128809 74131249 74128809 ID=Msa0184510;Name=Msa0184510
chr1_4 mRNA 74128809 74131249 74128809 ID=Msa0184510-mRNA-1;Parent=Msa0184510;Name=Msa0184510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=147|1|1|1|1|1|2|651|349
chr1_4 exon 74128809 74129843 74128809 ID=Msa0184510-mRNA-1:exon:25214;Parent=Msa0184510-mRNA-1
chr1_4 exon 74130437 74131249 74130437 ID=Msa0184510-mRNA-1:exon:25215;Parent=Msa0184510-mRNA-1
chr1_4 five_prime_UTR 74128809 74128955 74128809 ID=Msa0184510-mRNA-1:five_prime_utr;Parent=Msa0184510-mRNA-1
chr1_4 CDS 74128956 74129843 74128956 ID=Msa0184510-mRNA-1:cds;Parent=Msa0184510-mRNA-1
chr1_4 CDS 74130437 74130598 74130437 ID=Msa0184510-mRNA-1:cds;Parent=Msa0184510-mRNA-1
chr1_4 three_prime_UTR 74130599 74131249 74130599 ID=Msa0184510-mRNA-1:three_prime_utr;Parent=Msa0184510-mRNA-1
Gene Sequence

>Msa0184510

ATGGCATCCATGGCCACTGCATCTCTCACTACTTCCCTCTCTTCAACTCCCAAATCCTCATTCTTCAATGGAAGACCAATTGCTACCCGCACCTCCACCATCATCAAATCCACCCCCCAAAAAATCACCATGTCACTAACCACACCCCCTTACGATATAAACACCTTCAAATTCGCACCCATCAAAGAATCCATCGTCTCTCGTGAAATGACCCGTCGTTACATGACAGATATGATCACCTACGCCGACACCGACGTCGTCATCGTCGGTGCGGGTTCGGCCGGTCTTTCATGCGCTTACGAATTATCCAAAAACCCAAACATCAGTATCGCCATCATCGAACAATCCGTCAGCCCCGGTGGCGGTGCATGGCTCGGTGGCCAGCTCTTCTCCGCCATGGTTGTTCGCAAACCAGCTCATCTCTTCCTCGATGAAATCGGTGTCGAATATGATGAACAAGAAGACTACGTTGTCATCAAACACGCTGCTCTATTCACTTCAACCATCATGAGCAAGCTTCTTGCAAAACCTAACGTAAAACTTTTCAATGCTGTTGCTGCTGAGGATTTGATTGTGAAGGAAAACAGAGTTGCTGGTGTTGTTACAAACTGGGCTTTGGTTTCGATGAACCATGATACACAATCTTGCATGGATCCTAATGTTATGGAAGCTAAGGTTGTTGTGAGTTCTTGTGGACATGATGGTCCTTTTGGTGCTACTGGTGTTAAGAGGTTGAAGAGTATTGGTATGATTGATCATGTTCCTGGAATGAAAGCACTTGATATGAATACTGCTGAAGATGCTATTGTTCGTCTTACAAGGGAAGTTGTTCCTGGTATGATTGTTACTGGTATGGAAGTTGCTGAAATTGATGGTGCCCCAAGAATGGGTCCAACATTTGGGGCAATGATGATATCAGGACAGAAAGCTGCACATTTGGCATTGAAGGCATTGGGCAGGAACAATGCAATTGATGGAACATGTGAATCTGCAAGTGAACCAGAGCTTATTTTGGCTTCTGCTGAATCACAGGACACTGTTGATGCTTAA

Protein sequence

>Msa0184510

MASMATASLTTSLSSTPKSSFFNGRPIATRTSTIIKSTPQKITMSLTTPPYDINTFKFAPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNISIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVEYDEQEDYVVIKHAALFTSTIMSKLLAKPNVKLFNAVAAEDLIVKENRVAGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRNNAIDGTCESASEPELILASAESQDTVDA*