AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0293000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293000 MtrunA17_Chr2g0313871 99.541 218 1 0 1 218 204 421 4.39e-156 439
Msa0293000 MtrunA17_Chr4g0053631 39.899 198 119 0 1 198 194 391 6.75e-50 167
Msa0293000 MtrunA17_Chr8g0373601 33.117 154 94 2 1 145 180 333 5.58e-17 78.6
Msa0293000 MtrunA17_Chr5g0403581 33.125 160 98 2 1 151 179 338 1.03e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293000 AT1G78510.2 78.802 217 46 0 1 217 150 366 4.99e-124 355
Msa0293000 AT1G78510.1 78.802 217 46 0 1 217 189 405 1.75e-123 356
Msa0293000 AT1G17050.1 76.959 217 50 0 1 217 200 416 9.97e-123 354
Msa0293000 AT2G34630.1 39.000 200 122 0 1 200 98 297 8.89e-50 165
Msa0293000 AT2G34630.2 39.000 200 122 0 1 200 199 398 1.56e-48 164
Msa0293000 AT2G18620.1 37.647 170 94 5 1 159 154 322 3.14e-18 82.0
Msa0293000 AT3G20160.1 35.032 157 89 4 1 145 150 305 3.93e-18 82.0
Msa0293000 AT4G36810.1 37.736 159 84 5 1 145 175 332 1.08e-17 80.9
Msa0293000 AT2G18640.1 35.065 154 91 3 1 145 180 333 5.47e-17 79.0
Msa0293000 AT3G14510.1 33.553 152 97 2 12 159 108 259 9.33e-17 77.4
Msa0293000 AT3G20160.2 45.455 77 41 1 69 145 202 277 6.34e-13 67.0
Msa0293000 AT2G23800.1 32.903 155 93 5 1 145 184 337 7.52e-12 64.3
Msa0293000 AT3G32040.1 31.579 152 100 2 12 159 184 335 1.10e-11 63.5
Msa0293000 AT3G29430.1 37.500 104 65 0 56 159 229 332 1.38e-11 63.2
Msa0293000 AT3G14550.3 36.522 115 72 1 46 159 221 335 1.51e-11 63.2
Msa0293000 AT3G14550.1 36.522 115 72 1 46 159 221 335 1.51e-11 63.2
Msa0293000 AT3G14550.2 36.522 115 72 1 46 159 221 335 1.51e-11 63.2
Msa0293000 AT3G14530.1 36.522 115 72 1 46 159 221 335 4.18e-11 62.0

Find 49 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCAACGCGAAAATTAC+AGG 0.258160 2_3:-42905933 None:intergenic
CCAGATCCAAGAAAATAAAA+TGG 0.265102 2_3:-42906397 None:intergenic
TTGATTGCTGCCAGCGTAAA+AGG 0.270096 2_3:+42905738 Msa0293000:CDS
GAAACTGTTCATCAAATGTT+TGG 0.338601 2_3:+42905206 Msa0293000:exon
CCAAGTTGTCGACGACATAT+TGG 0.347498 2_3:+42905839 Msa0293000:CDS
CGAAAATTACAGGAGCTGTT+AGG 0.381707 2_3:-42905923 None:intergenic
TCAATGATATCCCTCAATTT+CGG 0.393056 2_3:-42905960 None:intergenic
CAGATCCAAGAAAATAAAAT+GGG 0.409484 2_3:-42906396 None:intergenic
AGGAGCTGTTAGGTTACCTT+TGG 0.423788 2_3:-42905913 None:intergenic
CCAATATGTCGTCGACAACT+TGG 0.427937 2_3:-42905839 None:intergenic
GAGTCTGAATTTAGCGAGAT+TGG 0.432083 2_3:+42905981 Msa0293000:CDS
GAAGGTGTTGATGGATTTGT+TGG 0.433548 2_3:-42906254 None:intergenic
ACTGAGAAAATGTTCGAATA+CGG 0.446574 2_3:+42905795 Msa0293000:CDS
ATCAAGTTGGTTAAGAGTTG+TGG 0.459670 2_3:+42906020 Msa0293000:CDS
AGCTTGCTTTATTTCTCCAC+TGG 0.468481 2_3:-42905646 None:intergenic
TCAAGTTGGTTAAGAGTTGT+GGG 0.479565 2_3:+42906021 Msa0293000:CDS
ACAAGAGTGGCAGTGCTGGC+TGG 0.494391 2_3:+42905230 Msa0293000:CDS
ACAAAGGGAGAAGGTGTTGA+TGG 0.496486 2_3:-42906263 None:intergenic
TTTCTTGGATCTGGTTGTAA+GGG 0.496646 2_3:+42906406 Msa0293000:three_prime_UTR
ACGCAATCGGCAGAGCAACT+TGG 0.497280 2_3:+42905867 Msa0293000:CDS
TTCGAATACGGGAAGAATCT+CGG 0.498347 2_3:+42905807 Msa0293000:CDS
TGGAACAAGAGTGGCAGTGC+TGG 0.503897 2_3:+42905226 Msa0293000:CDS
TGGAGAAAGAACCGAAATTG+AGG 0.505243 2_3:+42905949 Msa0293000:CDS
CTGAGAAAATGTTCGAATAC+GGG 0.508576 2_3:+42905796 Msa0293000:CDS
CATATTGGATTTCACGCAAT+CGG 0.510526 2_3:+42905854 Msa0293000:CDS
GGCAGAGCAACTTGGAAAGC+CGG 0.515718 2_3:+42905875 Msa0293000:CDS
TCATGTTTGCACAATCATCA+TGG 0.521316 2_3:+42905258 Msa0293000:CDS
TTGGCGAGGTCCGTGCATGC+CGG 0.522262 2_3:-42905894 None:intergenic
GCTAAACGATACACACTTGG+AGG 0.522408 2_3:-42906113 None:intergenic
ACTTGGAAAGCCGGCATGCA+CGG 0.524987 2_3:+42905884 Msa0293000:CDS
AGTCATTAAACTTATCAGCC+AGG 0.530858 2_3:+42905307 Msa0293000:CDS
GGAGAAAGAACCGAAATTGA+GGG 0.533563 2_3:+42905950 Msa0293000:CDS
TACCAGTGTATAGACATTGA+AGG 0.556359 2_3:+42906300 Msa0293000:three_prime_UTR
TCGTTTAGCTCTTGAGGACA+TGG 0.571941 2_3:+42906127 Msa0293000:CDS
AAAAGTAGCACAAAGGGAGA+AGG 0.579675 2_3:-42906272 None:intergenic
TGGTGACATATAATCTTCAA+AGG 0.582035 2_3:+42906147 Msa0293000:CDS
AATCGAAAGAGCACAAGAGT+TGG 0.582560 2_3:+42906046 Msa0293000:CDS
TGTGTATCGTTTAGCTCTTG+AGG 0.586196 2_3:+42906121 Msa0293000:CDS
AAGTTGGTTAAGAGTTGTGG+GGG 0.591345 2_3:+42906023 Msa0293000:CDS
GCATGCACGGACCTCGCCAA+AGG 0.594923 2_3:+42905897 Msa0293000:CDS
TATGTCGTCGACAACTTGGA+AGG 0.598026 2_3:-42905835 None:intergenic
TCAAATGTTTGGAACAAGAG+TGG 0.606800 2_3:+42905217 Msa0293000:exon
ATCCTTCAATGTCTATACAC+TGG 0.610603 2_3:-42906302 None:intergenic
CTGTTAGGTTACCTTTGGCG+AGG 0.614390 2_3:-42905908 None:intergenic
TCTTGACGAAGCGATCAAGT+TGG 0.618929 2_3:+42906007 Msa0293000:CDS
AGAGCTAAACGATACACACT+TGG 0.629738 2_3:-42906116 None:intergenic
CAAGTTGGTTAAGAGTTGTG+GGG 0.643343 2_3:+42906022 Msa0293000:CDS
AGATCCAAGAAAATAAAATG+GGG 0.695397 2_3:-42906395 None:intergenic
TACGCTGGCAGCAATCAAGG+AGG 0.714158 2_3:-42905733 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGAAAAAATCATTATTT+CGG + chr2_3:42905520-42905539 Msa0293000:intron 10.0%
!! TAATGAAAAAATCATTATTT+CGG + chr2_3:42905520-42905539 Msa0293000:intron 10.0%
!!! TTTTAAAAGTTGTATAATGA+TGG - chr2_3:42905339-42905358 None:intergenic 15.0%
!!! TTTTATTATTGCAAAACTTT+TGG + chr2_3:42905597-42905616 Msa0293000:intron 15.0%
!! TAAGATCATAAATACAAAAA+TGG - chr2_3:42906352-42906371 None:intergenic 15.0%
!!! TTTTAAAAGTTGTATAATGA+TGG - chr2_3:42905339-42905358 None:intergenic 15.0%
!!! TTTTATTATTGCAAAACTTT+TGG + chr2_3:42905597-42905616 Msa0293000:intron 15.0%
!! TAAGATCATAAATACAAAAA+TGG - chr2_3:42906352-42906371 None:intergenic 15.0%
!! AGTAATTGATATCCATTTAA+GGG - chr2_3:42905456-42905475 None:intergenic 20.0%
!! AAGTAATTGATATCCATTTA+AGG - chr2_3:42905457-42905476 None:intergenic 20.0%
!! TAAAAACAATGTTTAGAAAG+TGG - chr2_3:42905582-42905601 None:intergenic 20.0%
!! AGTAATTGATATCCATTTAA+GGG - chr2_3:42905456-42905475 None:intergenic 20.0%
!! AAGTAATTGATATCCATTTA+AGG - chr2_3:42905457-42905476 None:intergenic 20.0%
!! TAAAAACAATGTTTAGAAAG+TGG - chr2_3:42905582-42905601 None:intergenic 20.0%
!! TAATGACTTCAATGTTTTCA+AGG - chr2_3:42905295-42905314 None:intergenic 25.0%
! GTAATTGATATCCATTTAAG+GGG - chr2_3:42905455-42905474 None:intergenic 25.0%
! AATGGATATCAATTACTTCA+AGG + chr2_3:42905459-42905478 Msa0293000:intron 25.0%
! ATGGATATCAATTACTTCAA+GGG + chr2_3:42905460-42905479 Msa0293000:intron 25.0%
!!! TTTTCCCCATTTTATTTTCT+TGG + chr2_3:42906391-42906410 Msa0293000:three_prime_UTR 25.0%
! AGATCCAAGAAAATAAAATG+GGG - chr2_3:42906398-42906417 None:intergenic 25.0%
! CAGATCCAAGAAAATAAAAT+GGG - chr2_3:42906399-42906418 None:intergenic 25.0%
!! TAATGACTTCAATGTTTTCA+AGG - chr2_3:42905295-42905314 None:intergenic 25.0%
! GTAATTGATATCCATTTAAG+GGG - chr2_3:42905455-42905474 None:intergenic 25.0%
! AATGGATATCAATTACTTCA+AGG + chr2_3:42905459-42905478 Msa0293000:intron 25.0%
! ATGGATATCAATTACTTCAA+GGG + chr2_3:42905460-42905479 Msa0293000:intron 25.0%
!!! TTTTCCCCATTTTATTTTCT+TGG + chr2_3:42906391-42906410 Msa0293000:three_prime_UTR 25.0%
! AGATCCAAGAAAATAAAATG+GGG - chr2_3:42906398-42906417 None:intergenic 25.0%
! CAGATCCAAGAAAATAAAAT+GGG - chr2_3:42906399-42906418 None:intergenic 25.0%
GAAACTGTTCATCAAATGTT+TGG + chr2_3:42905206-42905225 Msa0293000:exon 30.0%
ATACGTTCTTTCATATTCAC+CGG - chr2_3:42905417-42905436 None:intergenic 30.0%
AATATGAAAGAACGTATGCT+AGG + chr2_3:42905420-42905439 Msa0293000:intron 30.0%
TATCAATTACTTCAAGGGAT+TGG + chr2_3:42905465-42905484 Msa0293000:intron 30.0%
ATCAATTACTTCAAGGGATT+GGG + chr2_3:42905466-42905485 Msa0293000:intron 30.0%
ACTGAGAAAATGTTCGAATA+CGG + chr2_3:42905795-42905814 Msa0293000:CDS 30.0%
TCAATGATATCCCTCAATTT+CGG - chr2_3:42905963-42905982 None:intergenic 30.0%
TGGTGACATATAATCTTCAA+AGG + chr2_3:42906147-42906166 Msa0293000:CDS 30.0%
AACTCAAAAAGTAGCACAAA+GGG - chr2_3:42906281-42906300 None:intergenic 30.0%
TAACTCAAAAAGTAGCACAA+AGG - chr2_3:42906282-42906301 None:intergenic 30.0%
CCAGATCCAAGAAAATAAAA+TGG - chr2_3:42906400-42906419 None:intergenic 30.0%
!!! CCATTTTATTTTCTTGGATC+TGG + chr2_3:42906397-42906416 Msa0293000:three_prime_UTR 30.0%
GAAACTGTTCATCAAATGTT+TGG + chr2_3:42905206-42905225 Msa0293000:exon 30.0%
ATACGTTCTTTCATATTCAC+CGG - chr2_3:42905417-42905436 None:intergenic 30.0%
AATATGAAAGAACGTATGCT+AGG + chr2_3:42905420-42905439 Msa0293000:intron 30.0%
TATCAATTACTTCAAGGGAT+TGG + chr2_3:42905465-42905484 Msa0293000:intron 30.0%
ATCAATTACTTCAAGGGATT+GGG + chr2_3:42905466-42905485 Msa0293000:intron 30.0%
ACTGAGAAAATGTTCGAATA+CGG + chr2_3:42905795-42905814 Msa0293000:CDS 30.0%
TCAATGATATCCCTCAATTT+CGG - chr2_3:42905963-42905982 None:intergenic 30.0%
TGGTGACATATAATCTTCAA+AGG + chr2_3:42906147-42906166 Msa0293000:CDS 30.0%
AACTCAAAAAGTAGCACAAA+GGG - chr2_3:42906281-42906300 None:intergenic 30.0%
TAACTCAAAAAGTAGCACAA+AGG - chr2_3:42906282-42906301 None:intergenic 30.0%
CCAGATCCAAGAAAATAAAA+TGG - chr2_3:42906400-42906419 None:intergenic 30.0%
!!! CCATTTTATTTTCTTGGATC+TGG + chr2_3:42906397-42906416 Msa0293000:three_prime_UTR 30.0%
! TCAAATGTTTGGAACAAGAG+TGG + chr2_3:42905217-42905236 Msa0293000:exon 35.0%
TCATGTTTGCACAATCATCA+TGG + chr2_3:42905258-42905277 Msa0293000:CDS 35.0%
!! GACTTCAATGTTTTCAAGGT+TGG - chr2_3:42905291-42905310 None:intergenic 35.0%
AGTCATTAAACTTATCAGCC+AGG + chr2_3:42905307-42905326 Msa0293000:CDS 35.0%
! GTATAATGATGGAACTTACC+TGG - chr2_3:42905328-42905347 None:intergenic 35.0%
! GTGATTAAAGATTTTGCCAG+TGG + chr2_3:42905630-42905649 Msa0293000:CDS 35.0%
CTGAGAAAATGTTCGAATAC+GGG + chr2_3:42905796-42905815 Msa0293000:CDS 35.0%
CATATTGGATTTCACGCAAT+CGG + chr2_3:42905854-42905873 Msa0293000:CDS 35.0%
!! ATCAAGTTGGTTAAGAGTTG+TGG + chr2_3:42906020-42906039 Msa0293000:CDS 35.0%
!! TCAAGTTGGTTAAGAGTTGT+GGG + chr2_3:42906021-42906040 Msa0293000:CDS 35.0%
TACCAGTGTATAGACATTGA+AGG + chr2_3:42906300-42906319 Msa0293000:three_prime_UTR 35.0%
ATCCTTCAATGTCTATACAC+TGG - chr2_3:42906305-42906324 None:intergenic 35.0%
! TTTTCTTGGATCTGGTTGTA+AGG + chr2_3:42906405-42906424 Msa0293000:three_prime_UTR 35.0%
TTTCTTGGATCTGGTTGTAA+GGG + chr2_3:42906406-42906425 Msa0293000:three_prime_UTR 35.0%
! TCAAATGTTTGGAACAAGAG+TGG + chr2_3:42905217-42905236 Msa0293000:exon 35.0%
TCATGTTTGCACAATCATCA+TGG + chr2_3:42905258-42905277 Msa0293000:CDS 35.0%
!! GACTTCAATGTTTTCAAGGT+TGG - chr2_3:42905291-42905310 None:intergenic 35.0%
AGTCATTAAACTTATCAGCC+AGG + chr2_3:42905307-42905326 Msa0293000:CDS 35.0%
! GTATAATGATGGAACTTACC+TGG - chr2_3:42905328-42905347 None:intergenic 35.0%
! GTGATTAAAGATTTTGCCAG+TGG + chr2_3:42905630-42905649 Msa0293000:CDS 35.0%
CTGAGAAAATGTTCGAATAC+GGG + chr2_3:42905796-42905815 Msa0293000:CDS 35.0%
CATATTGGATTTCACGCAAT+CGG + chr2_3:42905854-42905873 Msa0293000:CDS 35.0%
!! ATCAAGTTGGTTAAGAGTTG+TGG + chr2_3:42906020-42906039 Msa0293000:CDS 35.0%
!! TCAAGTTGGTTAAGAGTTGT+GGG + chr2_3:42906021-42906040 Msa0293000:CDS 35.0%
TACCAGTGTATAGACATTGA+AGG + chr2_3:42906300-42906319 Msa0293000:three_prime_UTR 35.0%
ATCCTTCAATGTCTATACAC+TGG - chr2_3:42906305-42906324 None:intergenic 35.0%
! TTTTCTTGGATCTGGTTGTA+AGG + chr2_3:42906405-42906424 Msa0293000:three_prime_UTR 35.0%
ATCATTCCAAGATTCAACCC+TGG + chr2_3:42905391-42905410 Msa0293000:intron 40.0%
GAAAGAACGTATGCTAGGAT+AGG + chr2_3:42905425-42905444 Msa0293000:intron 40.0%
!! CAAAACTTTTGGTGTGTGAC+AGG + chr2_3:42905608-42905627 Msa0293000:intron 40.0%
!! AGCTTGCTTTATTTCTCCAC+TGG - chr2_3:42905649-42905668 None:intergenic 40.0%
TTCGAATACGGGAAGAATCT+CGG + chr2_3:42905807-42905826 Msa0293000:CDS 40.0%
CGAAAATTACAGGAGCTGTT+AGG - chr2_3:42905926-42905945 None:intergenic 40.0%
TTCTCCAACGCGAAAATTAC+AGG - chr2_3:42905936-42905955 None:intergenic 40.0%
TGGAGAAAGAACCGAAATTG+AGG + chr2_3:42905949-42905968 Msa0293000:CDS 40.0%
GGAGAAAGAACCGAAATTGA+GGG + chr2_3:42905950-42905969 Msa0293000:CDS 40.0%
GAGTCTGAATTTAGCGAGAT+TGG + chr2_3:42905981-42906000 Msa0293000:CDS 40.0%
!! CAAGTTGGTTAAGAGTTGTG+GGG + chr2_3:42906022-42906041 Msa0293000:CDS 40.0%
! AAGTTGGTTAAGAGTTGTGG+GGG + chr2_3:42906023-42906042 Msa0293000:CDS 40.0%
! AATCGAAAGAGCACAAGAGT+TGG + chr2_3:42906046-42906065 Msa0293000:CDS 40.0%
AGAGCTAAACGATACACACT+TGG - chr2_3:42906119-42906138 None:intergenic 40.0%
!! TGTGTATCGTTTAGCTCTTG+AGG + chr2_3:42906121-42906140 Msa0293000:CDS 40.0%
!! GAAGGTGTTGATGGATTTGT+TGG - chr2_3:42906257-42906276 None:intergenic 40.0%
AAAAGTAGCACAAAGGGAGA+AGG - chr2_3:42906275-42906294 None:intergenic 40.0%
TTCTTGGATCTGGTTGTAAG+GGG + chr2_3:42906407-42906426 Msa0293000:three_prime_UTR 40.0%
ATCATTCCAAGATTCAACCC+TGG + chr2_3:42905391-42905410 Msa0293000:intron 40.0%
GAAAGAACGTATGCTAGGAT+AGG + chr2_3:42905425-42905444 Msa0293000:intron 40.0%
!! CAAAACTTTTGGTGTGTGAC+AGG + chr2_3:42905608-42905627 Msa0293000:intron 40.0%
!! AGCTTGCTTTATTTCTCCAC+TGG - chr2_3:42905649-42905668 None:intergenic 40.0%
TTCGAATACGGGAAGAATCT+CGG + chr2_3:42905807-42905826 Msa0293000:CDS 40.0%
CGAAAATTACAGGAGCTGTT+AGG - chr2_3:42905926-42905945 None:intergenic 40.0%
TTCTCCAACGCGAAAATTAC+AGG - chr2_3:42905936-42905955 None:intergenic 40.0%
TGGAGAAAGAACCGAAATTG+AGG + chr2_3:42905949-42905968 Msa0293000:CDS 40.0%
GGAGAAAGAACCGAAATTGA+GGG + chr2_3:42905950-42905969 Msa0293000:CDS 40.0%
GAGTCTGAATTTAGCGAGAT+TGG + chr2_3:42905981-42906000 Msa0293000:CDS 40.0%
!! CAAGTTGGTTAAGAGTTGTG+GGG + chr2_3:42906022-42906041 Msa0293000:CDS 40.0%
! AAGTTGGTTAAGAGTTGTGG+GGG + chr2_3:42906023-42906042 Msa0293000:CDS 40.0%
! AATCGAAAGAGCACAAGAGT+TGG + chr2_3:42906046-42906065 Msa0293000:CDS 40.0%
AGAGCTAAACGATACACACT+TGG - chr2_3:42906119-42906138 None:intergenic 40.0%
!! TGTGTATCGTTTAGCTCTTG+AGG + chr2_3:42906121-42906140 Msa0293000:CDS 40.0%
!! GAAGGTGTTGATGGATTTGT+TGG - chr2_3:42906257-42906276 None:intergenic 40.0%
AAAAGTAGCACAAAGGGAGA+AGG - chr2_3:42906275-42906294 None:intergenic 40.0%
TCTTTCATATTCACCGGCCA+GGG - chr2_3:42905411-42905430 None:intergenic 45.0%
TTCTTTCATATTCACCGGCC+AGG - chr2_3:42905412-42905431 None:intergenic 45.0%
GGATAGGTCAACCCCTTAAA+TGG + chr2_3:42905441-42905460 Msa0293000:intron 45.0%
! TTTTACGCTGGCAGCAATCA+AGG - chr2_3:42905739-42905758 None:intergenic 45.0%
TTGATTGCTGCCAGCGTAAA+AGG + chr2_3:42905738-42905757 Msa0293000:CDS 45.0%
! AAAGGAGCTGCAGTTTTCAG+CGG + chr2_3:42905756-42905775 Msa0293000:CDS 45.0%
TATGTCGTCGACAACTTGGA+AGG - chr2_3:42905838-42905857 None:intergenic 45.0%
CCAATATGTCGTCGACAACT+TGG - chr2_3:42905842-42905861 None:intergenic 45.0%
CCAAGTTGTCGACGACATAT+TGG + chr2_3:42905839-42905858 Msa0293000:CDS 45.0%
AGGAGCTGTTAGGTTACCTT+TGG - chr2_3:42905916-42905935 None:intergenic 45.0%
! AGCTCCTGTAATTTTCGCGT+TGG + chr2_3:42905929-42905948 Msa0293000:CDS 45.0%
TCTTGACGAAGCGATCAAGT+TGG + chr2_3:42906007-42906026 Msa0293000:CDS 45.0%
GCTAAACGATACACACTTGG+AGG - chr2_3:42906116-42906135 None:intergenic 45.0%
!! TCGTTTAGCTCTTGAGGACA+TGG + chr2_3:42906127-42906146 Msa0293000:CDS 45.0%
!! ACAAAGGGAGAAGGTGTTGA+TGG - chr2_3:42906266-42906285 None:intergenic 45.0%
TCTTGGATCTGGTTGTAAGG+GGG + chr2_3:42906408-42906427 Msa0293000:three_prime_UTR 45.0%
TCTTTCATATTCACCGGCCA+GGG - chr2_3:42905411-42905430 None:intergenic 45.0%
TTCTTTCATATTCACCGGCC+AGG - chr2_3:42905412-42905431 None:intergenic 45.0%
GGATAGGTCAACCCCTTAAA+TGG + chr2_3:42905441-42905460 Msa0293000:intron 45.0%
! TTTTACGCTGGCAGCAATCA+AGG - chr2_3:42905739-42905758 None:intergenic 45.0%
TTGATTGCTGCCAGCGTAAA+AGG + chr2_3:42905738-42905757 Msa0293000:CDS 45.0%
! AAAGGAGCTGCAGTTTTCAG+CGG + chr2_3:42905756-42905775 Msa0293000:CDS 45.0%
TATGTCGTCGACAACTTGGA+AGG - chr2_3:42905838-42905857 None:intergenic 45.0%
CCAATATGTCGTCGACAACT+TGG - chr2_3:42905842-42905861 None:intergenic 45.0%
CCAAGTTGTCGACGACATAT+TGG + chr2_3:42905839-42905858 Msa0293000:CDS 45.0%
AGGAGCTGTTAGGTTACCTT+TGG - chr2_3:42905916-42905935 None:intergenic 45.0%
! AGCTCCTGTAATTTTCGCGT+TGG + chr2_3:42905929-42905948 Msa0293000:CDS 45.0%
TCTTGACGAAGCGATCAAGT+TGG + chr2_3:42906007-42906026 Msa0293000:CDS 45.0%
GCTAAACGATACACACTTGG+AGG - chr2_3:42906116-42906135 None:intergenic 45.0%
!! TCGTTTAGCTCTTGAGGACA+TGG + chr2_3:42906127-42906146 Msa0293000:CDS 45.0%
!! ACAAAGGGAGAAGGTGTTGA+TGG - chr2_3:42906266-42906285 None:intergenic 45.0%
TTCCAAGATTCAACCCTGGC+CGG + chr2_3:42905395-42905414 Msa0293000:intron 50.0%
! AACTGCAGCTCCTTTTACGC+TGG - chr2_3:42905751-42905770 None:intergenic 50.0%
CTGTTAGGTTACCTTTGGCG+AGG - chr2_3:42905911-42905930 None:intergenic 50.0%
CTTGGATCTGGTTGTAAGGG+GGG + chr2_3:42906409-42906428 Msa0293000:three_prime_UTR 50.0%
TTCCAAGATTCAACCCTGGC+CGG + chr2_3:42905395-42905414 Msa0293000:intron 50.0%
! AACTGCAGCTCCTTTTACGC+TGG - chr2_3:42905751-42905770 None:intergenic 50.0%
CTGTTAGGTTACCTTTGGCG+AGG - chr2_3:42905911-42905930 None:intergenic 50.0%
TGGAACAAGAGTGGCAGTGC+TGG + chr2_3:42905226-42905245 Msa0293000:CDS 55.0%
ACTTGCGCGCAGGGTTACTT+TGG + chr2_3:42905495-42905514 Msa0293000:intron 55.0%
TACGCTGGCAGCAATCAAGG+AGG - chr2_3:42905736-42905755 None:intergenic 55.0%
ACGCAATCGGCAGAGCAACT+TGG + chr2_3:42905867-42905886 Msa0293000:CDS 55.0%
GGCAGAGCAACTTGGAAAGC+CGG + chr2_3:42905875-42905894 Msa0293000:CDS 55.0%
ACTTGGAAAGCCGGCATGCA+CGG + chr2_3:42905884-42905903 Msa0293000:CDS 55.0%
TGGAACAAGAGTGGCAGTGC+TGG + chr2_3:42905226-42905245 Msa0293000:CDS 55.0%
ACTTGCGCGCAGGGTTACTT+TGG + chr2_3:42905495-42905514 Msa0293000:intron 55.0%
TACGCTGGCAGCAATCAAGG+AGG - chr2_3:42905736-42905755 None:intergenic 55.0%
ACGCAATCGGCAGAGCAACT+TGG + chr2_3:42905867-42905886 Msa0293000:CDS 55.0%
GGCAGAGCAACTTGGAAAGC+CGG + chr2_3:42905875-42905894 Msa0293000:CDS 55.0%
ACTTGGAAAGCCGGCATGCA+CGG + chr2_3:42905884-42905903 Msa0293000:CDS 55.0%
!! ACAAGAGTGGCAGTGCTGGC+TGG + chr2_3:42905230-42905249 Msa0293000:CDS 60.0%
CACCGGCCAGGGTTGAATCT+TGG - chr2_3:42905400-42905419 None:intergenic 60.0%
AGTAACCCTGCGCGCAAGTG+TGG - chr2_3:42905494-42905513 None:intergenic 60.0%
!! ACAAGAGTGGCAGTGCTGGC+TGG + chr2_3:42905230-42905249 Msa0293000:CDS 60.0%
CACCGGCCAGGGTTGAATCT+TGG - chr2_3:42905400-42905419 None:intergenic 60.0%
AGTAACCCTGCGCGCAAGTG+TGG - chr2_3:42905494-42905513 None:intergenic 60.0%
TTGGCGAGGTCCGTGCATGC+CGG - chr2_3:42905897-42905916 None:intergenic 65.0%
GCATGCACGGACCTCGCCAA+AGG + chr2_3:42905897-42905916 Msa0293000:CDS 65.0%
TTGGCGAGGTCCGTGCATGC+CGG - chr2_3:42905897-42905916 None:intergenic 65.0%
GCATGCACGGACCTCGCCAA+AGG + chr2_3:42905897-42905916 Msa0293000:CDS 65.0%
TGGGCTCCACACTTGCGCGC+AGG + chr2_3:42905485-42905504 Msa0293000:intron 70.0%
GGGCTCCACACTTGCGCGCA+GGG + chr2_3:42905486-42905505 Msa0293000:intron 70.0%
TGGGCTCCACACTTGCGCGC+AGG + chr2_3:42905485-42905504 Msa0293000:intron 70.0%
GGGCTCCACACTTGCGCGCA+GGG + chr2_3:42905486-42905505 Msa0293000:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 42905200 42906428 42905200 ID=Msa0293000;Name=Msa0293000
chr2_3 mRNA 42905200 42906428 42905200 ID=Msa0293000-mRNA-1;Parent=Msa0293000;Name=Msa0293000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=21|1|1|1|1|1|2|250|218
chr2_3 exon 42905200 42905328 42905200 ID=Msa0293000-mRNA-1:exon:13680;Parent=Msa0293000-mRNA-1
chr2_3 exon 42905630 42906428 42905630 ID=Msa0293000-mRNA-1:exon:13681;Parent=Msa0293000-mRNA-1
chr2_3 five_prime_UTR 42905200 42905220 42905200 ID=Msa0293000-mRNA-1:five_prime_utr;Parent=Msa0293000-mRNA-1
chr2_3 CDS 42905221 42905328 42905221 ID=Msa0293000-mRNA-1:cds;Parent=Msa0293000-mRNA-1
chr2_3 CDS 42905630 42906178 42905630 ID=Msa0293000-mRNA-1:cds;Parent=Msa0293000-mRNA-1
chr2_3 three_prime_UTR 42906179 42906428 42906179 ID=Msa0293000-mRNA-1:three_prime_utr;Parent=Msa0293000-mRNA-1
Gene Sequence

>Msa0293000

ATGTTTGGAACAAGAGTGGCAGTGCTGGCTGGAGACTTCATGTTTGCACAATCATCATGGTATCTCGCCAACCTTGAAAACATTGAAGTCATTAAACTTATCAGCCAGGTGATTAAAGATTTTGCCAGTGGAGAAATAAAGCAAGCTTCTAGCTTGTTTGATTGTGATGTTCAGCTCGACGAGTATCTAATCAAGAGTTATTTTAAGACAGCCTCCTTGATTGCTGCCAGCGTAAAAGGAGCTGCAGTTTTCAGCGGTTCTGACAGCAGCATGACTGAGAAAATGTTCGAATACGGGAAGAATCTCGGTCTCTCCTTCCAAGTTGTCGACGACATATTGGATTTCACGCAATCGGCAGAGCAACTTGGAAAGCCGGCATGCACGGACCTCGCCAAAGGTAACCTAACAGCTCCTGTAATTTTCGCGTTGGAGAAAGAACCGAAATTGAGGGATATCATTGAGTCTGAATTTAGCGAGATTGGTTCTCTTGACGAAGCGATCAAGTTGGTTAAGAGTTGTGGGGGAATCGAAAGAGCACAAGAGTTGGCAAAAGAGAAAGCTGATCTTGCTATTCAAAGTCTTCAATGTCTTCCTCCAAGTGTGTATCGTTTAGCTCTTGAGGACATGGTGACATATAATCTTCAAAGGATTGCATAA

Protein sequence

>Msa0293000

MFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIKQASSLFDCDVQLDEYLIKSYFKTASLIAASVKGAAVFSGSDSSMTEKMFEYGKNLGLSFQVVDDILDFTQSAEQLGKPACTDLAKGNLTAPVIFALEKEPKLRDIIESEFSEIGSLDEAIKLVKSCGGIERAQELAKEKADLAIQSLQCLPPSVYRLALEDMVTYNLQRIA*