Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757070 | XP_003611756.1 | 100.000 | 51 | 0 | 0 | 29 | 79 | 139 | 189 | 4.99e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757070 | sp|Q9FYK2|CML25_ARATH | 41.892 | 74 | 37 | 2 | 9 | 77 | 104 | 176 | 2.24e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757070 | G7K7Z3 | 100.000 | 51 | 0 | 0 | 29 | 79 | 139 | 189 | 2.39e-27 | 107 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0757070 | 0.807787 | 4.261246e-50 | -8.615850e-47 |
| Msa0714960 | Msa0757070 | 0.823420 | 1.398667e-53 | -8.615850e-47 |
| Msa0715110 | Msa0757070 | 0.826177 | 3.130272e-54 | -8.615850e-47 |
| Msa0757050 | Msa0757070 | 0.809538 | 1.801164e-50 | -8.615850e-47 |
| Msa0757070 | Msa0757080 | 0.804295 | 2.313174e-49 | -8.615850e-47 |
| Msa0757070 | Msa0798030 | 0.824683 | 7.068389e-54 | -8.615850e-47 |
| Msa0757070 | Msa0798070 | 0.837045 | 6.550439e-57 | -8.615850e-47 |
| Msa0757070 | Msa0836620 | 0.806342 | 8.616440e-50 | -8.615850e-47 |
| Msa0757070 | Msa0836630 | 0.808345 | 3.242566e-50 | -8.615850e-47 |
| Msa0426330 | Msa0757070 | 0.824967 | 6.056091e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757070 | MtrunA17_Chr5g0402331 | 100.000 | 51 | 0 | 0 | 29 | 79 | 139 | 189 | 4.59e-31 | 107 |
| Msa0757070 | MtrunA17_Chr5g0402361 | 100.000 | 51 | 0 | 0 | 29 | 79 | 311 | 361 | 9.30e-30 | 107 |
| Msa0757070 | MtrunA17_Chr5g0402361 | 96.000 | 50 | 2 | 0 | 29 | 78 | 138 | 187 | 4.05e-27 | 100 |
| Msa0757070 | MtrunA17_Chr1g0161211 | 60.000 | 45 | 18 | 0 | 29 | 73 | 137 | 181 | 1.44e-13 | 62.4 |
| Msa0757070 | MtrunA17_Chr8g0391691 | 59.184 | 49 | 20 | 0 | 29 | 77 | 127 | 175 | 1.98e-12 | 59.3 |
| Msa0757070 | MtrunA17_Chr4g0044961 | 52.273 | 44 | 21 | 0 | 29 | 72 | 146 | 189 | 8.58e-12 | 57.8 |
| Msa0757070 | MtrunA17_Chr3g0111371 | 36.250 | 80 | 41 | 1 | 3 | 72 | 56 | 135 | 3.80e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757070 | AT1G24620.1 | 41.892 | 74 | 37 | 2 | 9 | 77 | 104 | 176 | 2.28e-12 | 59.3 |
| Msa0757070 | AT1G66400.1 | 53.333 | 45 | 21 | 0 | 29 | 73 | 108 | 152 | 1.26e-11 | 57.0 |
| Msa0757070 | AT5G37770.1 | 53.191 | 47 | 22 | 0 | 29 | 75 | 112 | 158 | 1.73e-11 | 56.6 |
| Msa0757070 | AT5G37770.2 | 53.191 | 47 | 22 | 0 | 29 | 75 | 112 | 158 | 1.73e-11 | 56.6 |
| Msa0757070 | AT2G15680.1 | 52.273 | 44 | 21 | 0 | 29 | 72 | 139 | 182 | 4.62e-11 | 55.8 |
Find 12 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTAGTGCTTGTAAGAAAA+TGG | 0.341545 | 5_2:+11788270 | Msa0757070:CDS |
| AATTGTCTCAAATATTTAAG+AGG | 0.413219 | 5_2:+11788230 | Msa0757070:CDS |
| TCTCAAATATTTAAGAGGTT+AGG | 0.421604 | 5_2:+11788235 | Msa0757070:CDS |
| TAGATTTGAATGAGTTTACA+AGG | 0.501078 | 5_2:+11788326 | Msa0757070:CDS |
| TGTTCTGAGCAGATGATAAG+AGG | 0.530194 | 5_2:-11787223 | None:intergenic |
| GTGAAAGGTGTTGATAGTGA+TGG | 0.562762 | 5_2:+11788292 | Msa0757070:CDS |
| TCTTTACTCAATTAGTGCTG+AGG | 0.563047 | 5_2:+11788207 | Msa0757070:intron |
| TTTACAAGGATGATGATGAA+TGG | 0.601621 | 5_2:+11788340 | Msa0757070:CDS |
| GGTGTTGATAGTGATGGAGA+TGG | 0.629261 | 5_2:+11788298 | Msa0757070:CDS |
| ATCATCTGCTCAGAACATTG+TGG | 0.648833 | 5_2:+11787229 | Msa0757070:CDS |
| GCTTGTAAGAAAATGGTGAA+AGG | 0.660596 | 5_2:+11788277 | Msa0757070:CDS |
| TATATTGTTCTAGCAAAACA+AGG | 0.674335 | 5_2:+11787197 | Msa0757070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTTATGAATGATATTTT+TGG | - | chr5_2:11787539-11787558 | None:intergenic | 15.0% |
| !!! | AACTTTATGAATGATATTTT+TGG | - | chr5_2:11787539-11787558 | None:intergenic | 15.0% |
| !!! | TAGGTAACTTTTTATAACAT+TGG | - | chr5_2:11787565-11787584 | None:intergenic | 20.0% |
| !! | AATTATAGATCTCAAAATGT+GGG | - | chr5_2:11787818-11787837 | None:intergenic | 20.0% |
| !! | AAATTATAGATCTCAAAATG+TGG | - | chr5_2:11787819-11787838 | None:intergenic | 20.0% |
| !!! | TTTTTAGTTTTGAAAACAGT+TGG | + | chr5_2:11787897-11787916 | Msa0757070:intron | 20.0% |
| !!! | TTTTAGTTTTGAAAACAGTT+GGG | + | chr5_2:11787898-11787917 | Msa0757070:intron | 20.0% |
| !! | AATTGTCTCAAATATTTAAG+AGG | + | chr5_2:11788230-11788249 | Msa0757070:CDS | 20.0% |
| !!! | TAGGTAACTTTTTATAACAT+TGG | - | chr5_2:11787565-11787584 | None:intergenic | 20.0% |
| !! | AATTATAGATCTCAAAATGT+GGG | - | chr5_2:11787818-11787837 | None:intergenic | 20.0% |
| !! | AAATTATAGATCTCAAAATG+TGG | - | chr5_2:11787819-11787838 | None:intergenic | 20.0% |
| !!! | TTTTTAGTTTTGAAAACAGT+TGG | + | chr5_2:11787897-11787916 | Msa0757070:intron | 20.0% |
| !!! | TTTTAGTTTTGAAAACAGTT+GGG | + | chr5_2:11787898-11787917 | Msa0757070:intron | 20.0% |
| !! | AATTGTCTCAAATATTTAAG+AGG | + | chr5_2:11788230-11788249 | Msa0757070:CDS | 20.0% |
| ! | TATATTGTTCTAGCAAAACA+AGG | + | chr5_2:11787197-11787216 | Msa0757070:CDS | 25.0% |
| ! | TCTAATGTATGTTCTTTGAT+GGG | - | chr5_2:11787345-11787364 | None:intergenic | 25.0% |
| ! | ATCTAATGTATGTTCTTTGA+TGG | - | chr5_2:11787346-11787365 | None:intergenic | 25.0% |
| !! | ACTATTGGTTATCAAACTTT+AGG | - | chr5_2:11787584-11787603 | None:intergenic | 25.0% |
| !! | TTGATAACCAATAGTTATGT+AGG | + | chr5_2:11787589-11787608 | Msa0757070:intron | 25.0% |
| ! | CAATAAACCTACATAACTAT+TGG | - | chr5_2:11787599-11787618 | None:intergenic | 25.0% |
| ! | CTGTTATGATAAAAGGAAAA+AGG | - | chr5_2:11787639-11787658 | None:intergenic | 25.0% |
| ! | AATCTCCTTTGATATACAAT+TGG | - | chr5_2:11787665-11787684 | None:intergenic | 25.0% |
| ! | TTGTATATCAAAGGAGATTA+TGG | + | chr5_2:11787666-11787685 | Msa0757070:intron | 25.0% |
| !! | ATCTATAATTTGCATCTTGT+GGG | + | chr5_2:11787828-11787847 | Msa0757070:intron | 25.0% |
| ! | GTTATCTGTCAAAAGTAAAA+GGG | - | chr5_2:11787986-11788005 | None:intergenic | 25.0% |
| !!! | CTTTTACTTTTGACAGATAA+CGG | + | chr5_2:11787985-11788004 | Msa0757070:intron | 25.0% |
| !!! | TTTTACTTTTGACAGATAAC+GGG | + | chr5_2:11787986-11788005 | Msa0757070:intron | 25.0% |
| !!! | TTTTGTTTCTTTGAATAGCT+CGG | + | chr5_2:11788010-11788029 | Msa0757070:intron | 25.0% |
| ! | AGGTATGTTCAAACTTTAAA+TGG | - | chr5_2:11788080-11788099 | None:intergenic | 25.0% |
| !!! | ACAATGTTTTGAGTTGTTAT+TGG | - | chr5_2:11788142-11788161 | None:intergenic | 25.0% |
| ! | TCTCAAATATTTAAGAGGTT+AGG | + | chr5_2:11788235-11788254 | Msa0757070:CDS | 25.0% |
| ! | TAGATTTGAATGAGTTTACA+AGG | + | chr5_2:11788326-11788345 | Msa0757070:CDS | 25.0% |
| ! | TATATTGTTCTAGCAAAACA+AGG | + | chr5_2:11787197-11787216 | Msa0757070:CDS | 25.0% |
| ! | TCTAATGTATGTTCTTTGAT+GGG | - | chr5_2:11787345-11787364 | None:intergenic | 25.0% |
| ! | ATCTAATGTATGTTCTTTGA+TGG | - | chr5_2:11787346-11787365 | None:intergenic | 25.0% |
| !! | ACTATTGGTTATCAAACTTT+AGG | - | chr5_2:11787584-11787603 | None:intergenic | 25.0% |
| !! | TTGATAACCAATAGTTATGT+AGG | + | chr5_2:11787589-11787608 | Msa0757070:intron | 25.0% |
| ! | CAATAAACCTACATAACTAT+TGG | - | chr5_2:11787599-11787618 | None:intergenic | 25.0% |
| ! | CTGTTATGATAAAAGGAAAA+AGG | - | chr5_2:11787639-11787658 | None:intergenic | 25.0% |
| ! | AATCTCCTTTGATATACAAT+TGG | - | chr5_2:11787665-11787684 | None:intergenic | 25.0% |
| ! | TTGTATATCAAAGGAGATTA+TGG | + | chr5_2:11787666-11787685 | Msa0757070:intron | 25.0% |
| !! | ATCTATAATTTGCATCTTGT+GGG | + | chr5_2:11787828-11787847 | Msa0757070:intron | 25.0% |
| ! | GTTATCTGTCAAAAGTAAAA+GGG | - | chr5_2:11787986-11788005 | None:intergenic | 25.0% |
| !!! | CTTTTACTTTTGACAGATAA+CGG | + | chr5_2:11787985-11788004 | Msa0757070:intron | 25.0% |
| !!! | TTTTACTTTTGACAGATAAC+GGG | + | chr5_2:11787986-11788005 | Msa0757070:intron | 25.0% |
| !!! | TTTTGTTTCTTTGAATAGCT+CGG | + | chr5_2:11788010-11788029 | Msa0757070:intron | 25.0% |
| ! | AGGTATGTTCAAACTTTAAA+TGG | - | chr5_2:11788080-11788099 | None:intergenic | 25.0% |
| !!! | ACAATGTTTTGAGTTGTTAT+TGG | - | chr5_2:11788142-11788161 | None:intergenic | 25.0% |
| ! | TCTCAAATATTTAAGAGGTT+AGG | + | chr5_2:11788235-11788254 | Msa0757070:CDS | 25.0% |
| ! | TAGATTTGAATGAGTTTACA+AGG | + | chr5_2:11788326-11788345 | Msa0757070:CDS | 25.0% |
| ACATTAGATAGCAGAAAACT+AGG | + | chr5_2:11787357-11787376 | Msa0757070:intron | 30.0% | |
| TTGGCATCTGTTATGATAAA+AGG | - | chr5_2:11787646-11787665 | None:intergenic | 30.0% | |
| AGATGCCAATTGTATATCAA+AGG | + | chr5_2:11787657-11787676 | Msa0757070:intron | 30.0% | |
| AAAATGTGGGAATCTATTTC+AGG | - | chr5_2:11787805-11787824 | None:intergenic | 30.0% | |
| ! | GATCTATAATTTGCATCTTG+TGG | + | chr5_2:11787827-11787846 | Msa0757070:intron | 30.0% |
| ATAGAACAAACTCAATTGCA+AGG | - | chr5_2:11787963-11787982 | None:intergenic | 30.0% | |
| CGTTATCTGTCAAAAGTAAA+AGG | - | chr5_2:11787987-11788006 | None:intergenic | 30.0% | |
| ! | TTTACAAGGATGATGATGAA+TGG | + | chr5_2:11788340-11788359 | Msa0757070:CDS | 30.0% |
| ACATTAGATAGCAGAAAACT+AGG | + | chr5_2:11787357-11787376 | Msa0757070:intron | 30.0% | |
| TTGGCATCTGTTATGATAAA+AGG | - | chr5_2:11787646-11787665 | None:intergenic | 30.0% | |
| AGATGCCAATTGTATATCAA+AGG | + | chr5_2:11787657-11787676 | Msa0757070:intron | 30.0% | |
| AAAATGTGGGAATCTATTTC+AGG | - | chr5_2:11787805-11787824 | None:intergenic | 30.0% | |
| ! | GATCTATAATTTGCATCTTG+TGG | + | chr5_2:11787827-11787846 | Msa0757070:intron | 30.0% |
| ATAGAACAAACTCAATTGCA+AGG | - | chr5_2:11787963-11787982 | None:intergenic | 30.0% | |
| CGTTATCTGTCAAAAGTAAA+AGG | - | chr5_2:11787987-11788006 | None:intergenic | 30.0% | |
| ! | TTTACAAGGATGATGATGAA+TGG | + | chr5_2:11788340-11788359 | Msa0757070:CDS | 30.0% |
| ! | GTACTTGTTGCATTGTCTTT+AGG | + | chr5_2:11787422-11787441 | Msa0757070:intron | 35.0% |
| ! | GCATTGTCTTTAGGAATTTC+AGG | + | chr5_2:11787431-11787450 | Msa0757070:intron | 35.0% |
| TAAGTTCTTGGAATTGCGTA+AGG | - | chr5_2:11787459-11787478 | None:intergenic | 35.0% | |
| TTACGCAATTCCAAGAACTT+AGG | + | chr5_2:11787458-11787477 | Msa0757070:intron | 35.0% | |
| TCAGAGACTTTATGTAGCTA+AGG | + | chr5_2:11787485-11787504 | Msa0757070:intron | 35.0% | |
| CTGTTGTTGAGTATGAAGAT+CGG | + | chr5_2:11787751-11787770 | Msa0757070:intron | 35.0% | |
| TGTTGTTGAGTATGAAGATC+GGG | + | chr5_2:11787752-11787771 | Msa0757070:intron | 35.0% | |
| TACTAAAGCCTCTATACAGT+TGG | + | chr5_2:11787921-11787940 | Msa0757070:intron | 35.0% | |
| ACTAAAGCCTCTATACAGTT+GGG | + | chr5_2:11787922-11787941 | Msa0757070:intron | 35.0% | |
| TATTGTACCCAACTGTATAG+AGG | - | chr5_2:11787932-11787951 | None:intergenic | 35.0% | |
| TCTATACAGTTGGGTACAAT+AGG | + | chr5_2:11787931-11787950 | Msa0757070:intron | 35.0% | |
| AAAGTTTGAACATACCTGTG+AGG | + | chr5_2:11788083-11788102 | Msa0757070:intron | 35.0% | |
| AAGTTTGAACATACCTGTGA+GGG | + | chr5_2:11788084-11788103 | Msa0757070:intron | 35.0% | |
| !! | TTTAGGTTGTGTAAGGTCTA+CGG | + | chr5_2:11788108-11788127 | Msa0757070:intron | 35.0% |
| TCTTTACTCAATTAGTGCTG+AGG | + | chr5_2:11788207-11788226 | Msa0757070:intron | 35.0% | |
| ! | CCATTTTCTTACAAGCACTA+AGG | - | chr5_2:11788273-11788292 | None:intergenic | 35.0% |
| CCTTAGTGCTTGTAAGAAAA+TGG | + | chr5_2:11788270-11788289 | Msa0757070:CDS | 35.0% | |
| GCTTGTAAGAAAATGGTGAA+AGG | + | chr5_2:11788277-11788296 | Msa0757070:CDS | 35.0% | |
| ! | GTACTTGTTGCATTGTCTTT+AGG | + | chr5_2:11787422-11787441 | Msa0757070:intron | 35.0% |
| ! | GCATTGTCTTTAGGAATTTC+AGG | + | chr5_2:11787431-11787450 | Msa0757070:intron | 35.0% |
| TAAGTTCTTGGAATTGCGTA+AGG | - | chr5_2:11787459-11787478 | None:intergenic | 35.0% | |
| TTACGCAATTCCAAGAACTT+AGG | + | chr5_2:11787458-11787477 | Msa0757070:intron | 35.0% | |
| TCAGAGACTTTATGTAGCTA+AGG | + | chr5_2:11787485-11787504 | Msa0757070:intron | 35.0% | |
| CTGTTGTTGAGTATGAAGAT+CGG | + | chr5_2:11787751-11787770 | Msa0757070:intron | 35.0% | |
| TGTTGTTGAGTATGAAGATC+GGG | + | chr5_2:11787752-11787771 | Msa0757070:intron | 35.0% | |
| TACTAAAGCCTCTATACAGT+TGG | + | chr5_2:11787921-11787940 | Msa0757070:intron | 35.0% | |
| ACTAAAGCCTCTATACAGTT+GGG | + | chr5_2:11787922-11787941 | Msa0757070:intron | 35.0% | |
| TATTGTACCCAACTGTATAG+AGG | - | chr5_2:11787932-11787951 | None:intergenic | 35.0% | |
| TCTATACAGTTGGGTACAAT+AGG | + | chr5_2:11787931-11787950 | Msa0757070:intron | 35.0% | |
| AAAGTTTGAACATACCTGTG+AGG | + | chr5_2:11788083-11788102 | Msa0757070:intron | 35.0% | |
| AAGTTTGAACATACCTGTGA+GGG | + | chr5_2:11788084-11788103 | Msa0757070:intron | 35.0% | |
| !! | TTTAGGTTGTGTAAGGTCTA+CGG | + | chr5_2:11788108-11788127 | Msa0757070:intron | 35.0% |
| TCTTTACTCAATTAGTGCTG+AGG | + | chr5_2:11788207-11788226 | Msa0757070:intron | 35.0% | |
| ! | CCATTTTCTTACAAGCACTA+AGG | - | chr5_2:11788273-11788292 | None:intergenic | 35.0% |
| CCTTAGTGCTTGTAAGAAAA+TGG | + | chr5_2:11788270-11788289 | Msa0757070:CDS | 35.0% | |
| GCTTGTAAGAAAATGGTGAA+AGG | + | chr5_2:11788277-11788296 | Msa0757070:CDS | 35.0% | |
| ! | TGTTCTGAGCAGATGATAAG+AGG | - | chr5_2:11787226-11787245 | None:intergenic | 40.0% |
| ATCATCTGCTCAGAACATTG+TGG | + | chr5_2:11787229-11787248 | Msa0757070:CDS | 40.0% | |
| !! | CTCTGAGATTCCTAAGTTCT+TGG | - | chr5_2:11787471-11787490 | None:intergenic | 40.0% |
| GTTGTTGAGTATGAAGATCG+GGG | + | chr5_2:11787753-11787772 | Msa0757070:intron | 40.0% | |
| AACATACCTGTGAGGGATTT+AGG | + | chr5_2:11788091-11788110 | Msa0757070:intron | 40.0% | |
| !! | TGAGGGATTTAGGTTGTGTA+AGG | + | chr5_2:11788101-11788120 | Msa0757070:intron | 40.0% |
| !! | GTGAAAGGTGTTGATAGTGA+TGG | + | chr5_2:11788292-11788311 | Msa0757070:CDS | 40.0% |
| ! | TGTTCTGAGCAGATGATAAG+AGG | - | chr5_2:11787226-11787245 | None:intergenic | 40.0% |
| ATCATCTGCTCAGAACATTG+TGG | + | chr5_2:11787229-11787248 | Msa0757070:CDS | 40.0% | |
| !! | CTCTGAGATTCCTAAGTTCT+TGG | - | chr5_2:11787471-11787490 | None:intergenic | 40.0% |
| GTTGTTGAGTATGAAGATCG+GGG | + | chr5_2:11787753-11787772 | Msa0757070:intron | 40.0% | |
| AACATACCTGTGAGGGATTT+AGG | + | chr5_2:11788091-11788110 | Msa0757070:intron | 40.0% | |
| !! | TGAGGGATTTAGGTTGTGTA+AGG | + | chr5_2:11788101-11788120 | Msa0757070:intron | 40.0% |
| !! | GTGAAAGGTGTTGATAGTGA+TGG | + | chr5_2:11788292-11788311 | Msa0757070:CDS | 40.0% |
| ! | TTGCCCAGTGGTATTGAGAA+AGG | + | chr5_2:11787855-11787874 | Msa0757070:intron | 45.0% |
| ! | TGCCCAGTGGTATTGAGAAA+GGG | + | chr5_2:11787856-11787875 | Msa0757070:intron | 45.0% |
| CACCCTTTCTCAATACCACT+GGG | - | chr5_2:11787861-11787880 | None:intergenic | 45.0% | |
| TCACCCTTTCTCAATACCAC+TGG | - | chr5_2:11787862-11787881 | None:intergenic | 45.0% | |
| ACACAACCTAAATCCCTCAC+AGG | - | chr5_2:11788100-11788119 | None:intergenic | 45.0% | |
| !! | GGTGTTGATAGTGATGGAGA+TGG | + | chr5_2:11788298-11788317 | Msa0757070:CDS | 45.0% |
| ! | TTGCCCAGTGGTATTGAGAA+AGG | + | chr5_2:11787855-11787874 | Msa0757070:intron | 45.0% |
| ! | TGCCCAGTGGTATTGAGAAA+GGG | + | chr5_2:11787856-11787875 | Msa0757070:intron | 45.0% |
| CACCCTTTCTCAATACCACT+GGG | - | chr5_2:11787861-11787880 | None:intergenic | 45.0% | |
| TCACCCTTTCTCAATACCAC+TGG | - | chr5_2:11787862-11787881 | None:intergenic | 45.0% | |
| ACACAACCTAAATCCCTCAC+AGG | - | chr5_2:11788100-11788119 | None:intergenic | 45.0% | |
| !! | GGTGTTGATAGTGATGGAGA+TGG | + | chr5_2:11788298-11788317 | Msa0757070:CDS | 45.0% |
| ! | CTTGTGGGTCTTTTGCCCAG+TGG | + | chr5_2:11787843-11787862 | Msa0757070:intron | 55.0% |
| ! | CTTGTGGGTCTTTTGCCCAG+TGG | + | chr5_2:11787843-11787862 | Msa0757070:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 11787191 | 11788378 | 11787191 | ID=Msa0757070;Name=Msa0757070 |
| chr5_2 | mRNA | 11787191 | 11788378 | 11787191 | ID=Msa0757070-mRNA-1;Parent=Msa0757070;Name=Msa0757070-mRNA-1;_AED=0.57;_eAED=0.57;_QI=0|0|0|0.5|1|1|2|0|79 |
| chr5_2 | exon | 11787191 | 11787273 | 11787191 | ID=Msa0757070-mRNA-1:exon:5296;Parent=Msa0757070-mRNA-1 |
| chr5_2 | exon | 11788222 | 11788378 | 11788222 | ID=Msa0757070-mRNA-1:exon:5297;Parent=Msa0757070-mRNA-1 |
| chr5_2 | CDS | 11787191 | 11787273 | 11787191 | ID=Msa0757070-mRNA-1:cds;Parent=Msa0757070-mRNA-1 |
| chr5_2 | CDS | 11788222 | 11788378 | 11788222 | ID=Msa0757070-mRNA-1:cds;Parent=Msa0757070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
