AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0011720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011720 MtrunA17_Chr1g0160381 71.242 153 44 0 1 153 5 157 2.94e-81 236
Msa0011720 MtrunA17_Chr1g0160371 70.588 153 45 0 1 153 1 153 8.49e-79 230
Msa0011720 MtrunA17_Chr1g0160391 60.759 158 57 2 1 153 1 158 1.22e-62 189
Msa0011720 MtrunA17_Chr1g0160351 73.118 93 25 0 61 153 2 94 1.04e-45 144
Msa0011720 MtrunA17_Chr8g0355761 43.421 152 83 2 1 151 1 150 1.94e-43 140
Msa0011720 MtrunA17_Chr8g0355781 44.737 152 81 2 1 151 1 150 1.24e-42 138
Msa0011720 MtrunA17_Chr8g0355661 44.737 152 80 3 1 151 1 149 6.93e-42 137
Msa0011720 MtrunA17_Chr8g0355721 43.709 151 82 2 1 150 1 149 7.73e-42 136
Msa0011720 MtrunA17_Chr8g0355741 42.763 152 84 2 1 151 1 150 4.70e-41 134
Msa0011720 MtrunA17_Chr8g0355811 41.447 152 85 3 1 151 1 149 6.19e-41 134
Msa0011720 MtrunA17_Chr8g0355821 39.474 152 88 3 1 151 1 149 1.35e-38 128
Msa0011720 MtrunA17_Chr8g0355771 39.474 152 88 3 1 151 1 149 2.79e-38 127
Msa0011720 MtrunA17_Chr8g0355641 42.105 152 85 2 1 151 1 150 4.95e-38 127
Msa0011720 MtrunA17_Chr8g0355791 40.789 152 86 3 1 151 1 149 1.19e-37 126
Msa0011720 MtrunA17_Chr8g0355801 38.816 152 89 3 1 151 1 149 1.66e-37 125
Msa0011720 MtrunA17_Chr8g0339261 34.615 156 96 4 1 153 1 153 3.75e-28 102
Msa0011720 MtrunA17_Chr1g0160801 38.462 143 78 4 11 151 11 145 1.30e-24 92.4
Msa0011720 MtrunA17_Chr5g0413971 28.105 153 103 5 1 150 3 151 5.81e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011720 AT5G28010.1 38.961 154 90 3 2 153 14 165 2.12e-33 115
Msa0011720 AT5G28010.2 38.961 154 90 3 2 153 14 165 2.12e-33 115
Msa0011720 AT1G70890.1 37.013 154 93 3 2 153 6 157 4.30e-32 112
Msa0011720 AT1G70840.1 35.714 154 95 3 2 153 19 170 2.84e-30 108
Msa0011720 AT1G70830.5 35.714 154 95 3 2 153 21 172 5.93e-30 107
Msa0011720 AT1G70830.3 35.714 154 95 3 2 153 21 172 1.33e-29 107
Msa0011720 AT1G70830.2 35.714 154 95 3 2 153 21 172 5.25e-29 107
Msa0011720 AT5G28000.1 35.065 154 96 3 2 153 12 163 1.26e-28 103
Msa0011720 AT1G70830.1 35.714 154 95 3 2 153 21 172 2.30e-28 107
Msa0011720 AT1G70830.1 35.065 154 96 3 2 153 183 334 8.35e-27 103
Msa0011720 AT1G70850.2 34.211 152 96 3 2 151 8 157 8.39e-28 103
Msa0011720 AT1G70830.4 35.065 154 96 3 2 153 136 287 3.10e-27 103
Msa0011720 AT1G70830.4 35.417 96 59 2 59 153 32 125 2.76e-15 71.2
Msa0011720 AT1G70850.3 34.211 152 96 3 2 151 8 157 3.12e-27 103
Msa0011720 AT1G70850.3 34.266 143 90 3 13 153 175 315 9.00e-26 100
Msa0011720 AT1G70850.1 34.211 152 96 3 2 151 8 157 3.12e-27 103
Msa0011720 AT1G70850.1 34.266 143 90 3 13 153 175 315 9.00e-26 100
Msa0011720 AT1G23130.1 31.373 153 102 2 2 153 9 159 3.30e-25 94.7
Msa0011720 AT1G14930.1 33.553 152 97 3 1 151 1 149 1.10e-23 90.9
Msa0011720 AT1G14950.1 32.895 152 98 3 1 151 1 149 2.55e-22 87.4
Msa0011720 AT1G70880.1 29.221 154 105 3 2 153 7 158 4.46e-22 86.7
Msa0011720 AT1G35260.1 29.655 145 97 3 9 151 8 149 5.07e-22 86.3
Msa0011720 AT1G24020.1 33.766 154 95 5 1 151 1 150 6.68e-21 83.6
Msa0011720 AT1G24020.2 33.766 154 95 5 1 151 1 150 6.68e-21 83.6
Msa0011720 AT1G70870.1 32.450 151 88 3 1 151 1 137 1.07e-20 82.8
Msa0011720 AT4G14060.1 30.921 152 101 3 1 151 1 149 5.13e-20 81.3
Msa0011720 AT2G01520.1 30.921 152 101 3 1 151 1 149 6.09e-20 80.9
Msa0011720 AT1G30990.1 30.921 152 100 3 1 151 1 148 2.36e-19 79.7
Msa0011720 AT1G14960.1 30.921 152 101 3 1 151 1 149 4.30e-19 79.0
Msa0011720 AT4G23670.1 31.788 151 99 3 1 150 1 148 1.26e-18 77.8
Msa0011720 AT1G23120.1 29.861 144 95 3 10 153 10 147 4.73e-18 76.3
Msa0011720 AT1G23120.2 30.519 154 99 4 2 153 50 197 7.49e-18 76.6
Msa0011720 AT2G01530.1 29.605 152 103 3 1 151 1 149 3.54e-17 73.9
Msa0011720 AT1G14940.1 28.289 152 105 3 1 151 1 149 5.34e-17 73.6
Msa0011720 AT4G23680.1 29.801 151 102 3 1 150 1 148 9.05e-17 72.8
Msa0011720 AT3G26450.1 29.412 153 103 4 1 151 1 150 1.45e-16 72.4
Msa0011720 AT1G35310.1 27.465 142 99 3 13 153 12 150 1.22e-15 70.1
Msa0011720 AT3G26460.1 28.758 153 104 4 1 151 1 150 8.95e-15 67.8

Find 38 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTTATTAAATAATTTA+TGG 0.137260 1_1:+17652204 Msa0011720:three_prime_UTR
ATTGCCTGCAAAATAATTTA+TGG 0.170218 1_1:+17652280 Msa0011720:three_prime_UTR
GAAAAGTCTAAGTATGAATT+AGG 0.290488 1_1:-17652092 None:intergenic
CTTTAGTTTGATTTCTAGTA+TGG 0.291017 1_1:+17652409 Msa0011720:three_prime_UTR
TGAGAATTACAAGAGTTTAA+AGG 0.306517 1_1:+17651974 Msa0011720:CDS
CAATATTACAAGTGATTGAT+AGG 0.333378 1_1:+17651997 Msa0011720:CDS
AACAAAGACGAAGTGTGTTC+TGG 0.384362 1_1:+17652171 Msa0011720:three_prime_UTR
TGTATGTCATTAGAGATATT+AGG 0.397516 1_1:-17650842 None:intergenic
ATCAAATATAGCCTCTTTGA+TGG 0.402321 1_1:+17651942 Msa0011720:CDS
AAACACTGGGAATATACAAT+AGG 0.430950 1_1:+17650911 Msa0011720:CDS
ACGGCATACCTAGGCTTTGA+AGG 0.432480 1_1:-17652311 None:intergenic
AATATTAGAGAGCAGAGAAA+TGG 0.459202 1_1:+17650730 Msa0011720:exon
CTAGATTGCATCAAGGTGAC+TGG 0.494979 1_1:+17650870 Msa0011720:CDS
AGCAGAGAAATGGCTTTAAG+TGG 0.497628 1_1:+17650740 Msa0011720:exon
ATTGATAGGGAACAAGGTGG+TGG 0.505843 1_1:+17652011 Msa0011720:CDS
AAAGCCTAGGTATGCCGTAA+AGG 0.514929 1_1:+17652316 Msa0011720:three_prime_UTR
TTTCTTTACCTTCAAAGCCT+AGG 0.517018 1_1:+17652303 Msa0011720:three_prime_UTR
AAGGTGGTGGGATTGTGAAA+TGG 0.530026 1_1:+17652024 Msa0011720:CDS
CAACATTGTATCGAGGGAGT+TGG 0.543432 1_1:+17652360 Msa0011720:three_prime_UTR
CAAGTGATTGATAGGGAACA+AGG 0.548973 1_1:+17652005 Msa0011720:CDS
ACATTATAAAACTTAGCAGC+TGG 0.552667 1_1:-17650794 None:intergenic
ATGTTGGTTCTGTCAAACAC+TGG 0.553560 1_1:+17650897 Msa0011720:CDS
TCAAATATAGCCTCTTTGAT+GGG 0.565633 1_1:+17651943 Msa0011720:CDS
TTGATAGGGAACAAGGTGGT+GGG 0.566665 1_1:+17652012 Msa0011720:CDS
CAAGGTGACTGGGAAAATGT+TGG 0.574551 1_1:+17650881 Msa0011720:CDS
AATTGATGCTCATATTGTCA+TGG 0.580062 1_1:+17652133 Msa0011720:CDS
AATATTACAAGTGATTGATA+GGG 0.597584 1_1:+17651998 Msa0011720:CDS
TATTATCAACATTGTATCGA+GGG 0.597862 1_1:+17652354 Msa0011720:three_prime_UTR
TAGCCTCTTTGATGGGAACG+TGG 0.604910 1_1:+17651950 Msa0011720:CDS
TTTGCCTTTACGGCATACCT+AGG 0.607813 1_1:-17652320 None:intergenic
TGTTGGTTCTGTCAAACACT+GGG 0.608753 1_1:+17650898 Msa0011720:CDS
CACCCACGTTCCCATCAAAG+AGG 0.610559 1_1:-17651953 None:intergenic
TAGATTGCATCAAGGTGACT+GGG 0.615312 1_1:+17650871 Msa0011720:CDS
CATGTAGCTAGATTGCATCA+AGG 0.615345 1_1:+17650863 Msa0011720:CDS
GCAGAGAAATGGCTTTAAGT+GGG 0.628837 1_1:+17650741 Msa0011720:exon
AGCCTCTTTGATGGGAACGT+GGG 0.641629 1_1:+17651951 Msa0011720:CDS
ATATTATCAACATTGTATCG+AGG 0.659401 1_1:+17652353 Msa0011720:three_prime_UTR
GTGATTGATAGGGAACAAGG+TGG 0.783789 1_1:+17652008 Msa0011720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCCTATTAAAAAAAAATA+CGG - chr1_1:17651151-17651170 None:intergenic 10.0%
!!! AAATTTTGAATATAAGTATT+AGG - chr1_1:17651777-17651796 None:intergenic 10.0%
!! CTTATATTCAAAATTTAATA+TGG + chr1_1:17651781-17651800 Msa0011720:intron 10.0%
!! TTTCCTATTAAAAAAAAATA+CGG - chr1_1:17651151-17651170 None:intergenic 10.0%
!!! AAATTTTGAATATAAGTATT+AGG - chr1_1:17651777-17651796 None:intergenic 10.0%
!! CTTATATTCAAAATTTAATA+TGG + chr1_1:17651781-17651800 Msa0011720:intron 10.0%
!! TATACAATAGGTAATAATTA+AGG + chr1_1:17650923-17650942 Msa0011720:intron 15.0%
!!! AAAAAAAATACGGATTTTAT+CGG - chr1_1:17651141-17651160 None:intergenic 15.0%
!!! AATCCGTATTTTTTTTTAAT+AGG + chr1_1:17651145-17651164 Msa0011720:intron 15.0%
!! ATAAATAAACTCAAAAGTTA+TGG - chr1_1:17651687-17651706 None:intergenic 15.0%
!!! ATTCAATTTTTTACATAAGT+TGG - chr1_1:17652436-17652455 None:intergenic 15.0%
!! TATACAATAGGTAATAATTA+AGG + chr1_1:17650923-17650942 Msa0011720:intron 15.0%
!!! AAAAAAAATACGGATTTTAT+CGG - chr1_1:17651141-17651160 None:intergenic 15.0%
!!! AATCCGTATTTTTTTTTAAT+AGG + chr1_1:17651145-17651164 Msa0011720:intron 15.0%
!! ATAAATAAACTCAAAAGTTA+TGG - chr1_1:17651687-17651706 None:intergenic 15.0%
!!! ATTCAATTTTTTACATAAGT+TGG - chr1_1:17652436-17652455 None:intergenic 15.0%
!! GATGAGAACTATATATATAA+GGG - chr1_1:17651013-17651032 None:intergenic 20.0%
!!! AAAAAAATACGGATTTTATC+GGG - chr1_1:17651140-17651159 None:intergenic 20.0%
!! AATAAATACATAGAAACTAG+AGG - chr1_1:17651815-17651834 None:intergenic 20.0%
!! AATATTACAAGTGATTGATA+GGG + chr1_1:17651998-17652017 Msa0011720:CDS 20.0%
!!! TAACTTTTATGTTTGAAAGT+TGG + chr1_1:17652257-17652276 Msa0011720:three_prime_UTR 20.0%
!! GATGAGAACTATATATATAA+GGG - chr1_1:17651013-17651032 None:intergenic 20.0%
!!! AAAAAAATACGGATTTTATC+GGG - chr1_1:17651140-17651159 None:intergenic 20.0%
!! AATAAATACATAGAAACTAG+AGG - chr1_1:17651815-17651834 None:intergenic 20.0%
!! AATATTACAAGTGATTGATA+GGG + chr1_1:17651998-17652017 Msa0011720:CDS 20.0%
!!! TAACTTTTATGTTTGAAAGT+TGG + chr1_1:17652257-17652276 Msa0011720:three_prime_UTR 20.0%
! TGTATGTCATTAGAGATATT+AGG - chr1_1:17650845-17650864 None:intergenic 25.0%
! CATAGATGTAGGATATTTAA+AGG - chr1_1:17650981-17651000 None:intergenic 25.0%
! GGATGAGAACTATATATATA+AGG - chr1_1:17651014-17651033 None:intergenic 25.0%
! CAATAATCACTAAACATCAT+TGG - chr1_1:17651035-17651054 None:intergenic 25.0%
!!! TTTTTTTCTTTGATGTGGTT+CGG - chr1_1:17651239-17651258 None:intergenic 25.0%
! AAAAAAAACAGCAAAAGCTA+AGG + chr1_1:17651252-17651271 Msa0011720:intron 25.0%
!!! ATATTTTTTTGTTAACCCTC+CGG - chr1_1:17651616-17651635 None:intergenic 25.0%
!!! TTATTTTTTTTCCTTCTGCA+AGG - chr1_1:17651878-17651897 None:intergenic 25.0%
! TGAGAATTACAAGAGTTTAA+AGG + chr1_1:17651974-17651993 Msa0011720:CDS 25.0%
! CAATATTACAAGTGATTGAT+AGG + chr1_1:17651997-17652016 Msa0011720:CDS 25.0%
! GAAAAGTCTAAGTATGAATT+AGG - chr1_1:17652095-17652114 None:intergenic 25.0%
! ATTGCCTGCAAAATAATTTA+TGG + chr1_1:17652280-17652299 Msa0011720:three_prime_UTR 25.0%
!!! GAAACCATAAATTATTTTGC+AGG - chr1_1:17652287-17652306 None:intergenic 25.0%
! ATATTATCAACATTGTATCG+AGG + chr1_1:17652353-17652372 Msa0011720:three_prime_UTR 25.0%
! TATTATCAACATTGTATCGA+GGG + chr1_1:17652354-17652373 Msa0011720:three_prime_UTR 25.0%
!!! CTTTAGTTTGATTTCTAGTA+TGG + chr1_1:17652409-17652428 Msa0011720:three_prime_UTR 25.0%
! TGTATGTCATTAGAGATATT+AGG - chr1_1:17650845-17650864 None:intergenic 25.0%
! CATAGATGTAGGATATTTAA+AGG - chr1_1:17650981-17651000 None:intergenic 25.0%
! GGATGAGAACTATATATATA+AGG - chr1_1:17651014-17651033 None:intergenic 25.0%
! CAATAATCACTAAACATCAT+TGG - chr1_1:17651035-17651054 None:intergenic 25.0%
!!! TTTTTTTCTTTGATGTGGTT+CGG - chr1_1:17651239-17651258 None:intergenic 25.0%
! AAAAAAAACAGCAAAAGCTA+AGG + chr1_1:17651252-17651271 Msa0011720:intron 25.0%
!!! ATATTTTTTTGTTAACCCTC+CGG - chr1_1:17651616-17651635 None:intergenic 25.0%
!!! TTATTTTTTTTCCTTCTGCA+AGG - chr1_1:17651878-17651897 None:intergenic 25.0%
! TGAGAATTACAAGAGTTTAA+AGG + chr1_1:17651974-17651993 Msa0011720:CDS 25.0%
! CAATATTACAAGTGATTGAT+AGG + chr1_1:17651997-17652016 Msa0011720:CDS 25.0%
! GAAAAGTCTAAGTATGAATT+AGG - chr1_1:17652095-17652114 None:intergenic 25.0%
! ATTGCCTGCAAAATAATTTA+TGG + chr1_1:17652280-17652299 Msa0011720:three_prime_UTR 25.0%
!!! GAAACCATAAATTATTTTGC+AGG - chr1_1:17652287-17652306 None:intergenic 25.0%
! ATATTATCAACATTGTATCG+AGG + chr1_1:17652353-17652372 Msa0011720:three_prime_UTR 25.0%
! TATTATCAACATTGTATCGA+GGG + chr1_1:17652354-17652373 Msa0011720:three_prime_UTR 25.0%
!!! CTTTAGTTTGATTTCTAGTA+TGG + chr1_1:17652409-17652428 Msa0011720:three_prime_UTR 25.0%
AATATTAGAGAGCAGAGAAA+TGG + chr1_1:17650730-17650749 Msa0011720:exon 30.0%
ACATTATAAAACTTAGCAGC+TGG - chr1_1:17650797-17650816 None:intergenic 30.0%
AAACACTGGGAATATACAAT+AGG + chr1_1:17650911-17650930 Msa0011720:CDS 30.0%
AGATGTAGGATATTTAAAGG+AGG - chr1_1:17650978-17650997 None:intergenic 30.0%
GGATCAAATTACATAGATGT+AGG - chr1_1:17650992-17651011 None:intergenic 30.0%
TCTACAAAGTAGATGTACAA+AGG + chr1_1:17651197-17651216 Msa0011720:intron 30.0%
!!! TTTTTTCTTTGATGTGGTTC+GGG - chr1_1:17651238-17651257 None:intergenic 30.0%
!!! GCTGTTTTTTTTCTTTGATG+TGG - chr1_1:17651244-17651263 None:intergenic 30.0%
AATAATTGTCATCGCAAAAC+AGG + chr1_1:17651730-17651749 Msa0011720:intron 30.0%
ATCAAATATAGCCTCTTTGA+TGG + chr1_1:17651942-17651961 Msa0011720:CDS 30.0%
TCAAATATAGCCTCTTTGAT+GGG + chr1_1:17651943-17651962 Msa0011720:CDS 30.0%
AATTGATGCTCATATTGTCA+TGG + chr1_1:17652133-17652152 Msa0011720:CDS 30.0%
! ATCACAACATTTTGCCTTTA+CGG - chr1_1:17652333-17652352 None:intergenic 30.0%
AATATTAGAGAGCAGAGAAA+TGG + chr1_1:17650730-17650749 Msa0011720:exon 30.0%
ACATTATAAAACTTAGCAGC+TGG - chr1_1:17650797-17650816 None:intergenic 30.0%
AAACACTGGGAATATACAAT+AGG + chr1_1:17650911-17650930 Msa0011720:CDS 30.0%
AGATGTAGGATATTTAAAGG+AGG - chr1_1:17650978-17650997 None:intergenic 30.0%
GGATCAAATTACATAGATGT+AGG - chr1_1:17650992-17651011 None:intergenic 30.0%
TCTACAAAGTAGATGTACAA+AGG + chr1_1:17651197-17651216 Msa0011720:intron 30.0%
!!! TTTTTTCTTTGATGTGGTTC+GGG - chr1_1:17651238-17651257 None:intergenic 30.0%
!!! GCTGTTTTTTTTCTTTGATG+TGG - chr1_1:17651244-17651263 None:intergenic 30.0%
AATAATTGTCATCGCAAAAC+AGG + chr1_1:17651730-17651749 Msa0011720:intron 30.0%
ATCAAATATAGCCTCTTTGA+TGG + chr1_1:17651942-17651961 Msa0011720:CDS 30.0%
TCAAATATAGCCTCTTTGAT+GGG + chr1_1:17651943-17651962 Msa0011720:CDS 30.0%
AATTGATGCTCATATTGTCA+TGG + chr1_1:17652133-17652152 Msa0011720:CDS 30.0%
! ATCACAACATTTTGCCTTTA+CGG - chr1_1:17652333-17652352 None:intergenic 30.0%
! AAAATACGGATTTTATCGGG+AGG - chr1_1:17651137-17651156 None:intergenic 35.0%
ATGTGGTGTCTTATGATTCT+CGG - chr1_1:17651415-17651434 None:intergenic 35.0%
! ATGTCCTTTTTATGAATGGG+AGG - chr1_1:17651508-17651527 None:intergenic 35.0%
TCCCATTCATAAAAAGGACA+TGG + chr1_1:17651507-17651526 Msa0011720:intron 35.0%
! CCCATGTCCTTTTTATGAAT+GGG - chr1_1:17651511-17651530 None:intergenic 35.0%
CCCATTCATAAAAAGGACAT+GGG + chr1_1:17651508-17651527 Msa0011720:intron 35.0%
TGGAAATGGTTTCTTGGTAA+AGG - chr1_1:17651544-17651563 None:intergenic 35.0%
TAGTAATTCAGAGTTCGATG+TGG - chr1_1:17651573-17651592 None:intergenic 35.0%
ACATCGAACTCTGAATTACT+AGG + chr1_1:17651572-17651591 Msa0011720:intron 35.0%
CATCGAACTCTGAATTACTA+GGG + chr1_1:17651573-17651592 Msa0011720:intron 35.0%
TTTCTTTACCTTCAAAGCCT+AGG + chr1_1:17652303-17652322 Msa0011720:three_prime_UTR 35.0%
! AAAATACGGATTTTATCGGG+AGG - chr1_1:17651137-17651156 None:intergenic 35.0%
ATGTGGTGTCTTATGATTCT+CGG - chr1_1:17651415-17651434 None:intergenic 35.0%
! ATGTCCTTTTTATGAATGGG+AGG - chr1_1:17651508-17651527 None:intergenic 35.0%
TCCCATTCATAAAAAGGACA+TGG + chr1_1:17651507-17651526 Msa0011720:intron 35.0%
! CCCATGTCCTTTTTATGAAT+GGG - chr1_1:17651511-17651530 None:intergenic 35.0%
CCCATTCATAAAAAGGACAT+GGG + chr1_1:17651508-17651527 Msa0011720:intron 35.0%
TGGAAATGGTTTCTTGGTAA+AGG - chr1_1:17651544-17651563 None:intergenic 35.0%
TAGTAATTCAGAGTTCGATG+TGG - chr1_1:17651573-17651592 None:intergenic 35.0%
ACATCGAACTCTGAATTACT+AGG + chr1_1:17651572-17651591 Msa0011720:intron 35.0%
CATCGAACTCTGAATTACTA+GGG + chr1_1:17651573-17651592 Msa0011720:intron 35.0%
TTTCTTTACCTTCAAAGCCT+AGG + chr1_1:17652303-17652322 Msa0011720:three_prime_UTR 35.0%
!! AGCAGAGAAATGGCTTTAAG+TGG + chr1_1:17650740-17650759 Msa0011720:exon 40.0%
!! GCAGAGAAATGGCTTTAAGT+GGG + chr1_1:17650741-17650760 Msa0011720:exon 40.0%
CATGTAGCTAGATTGCATCA+AGG + chr1_1:17650863-17650882 Msa0011720:CDS 40.0%
TAGATTGCATCAAGGTGACT+GGG + chr1_1:17650871-17650890 Msa0011720:CDS 40.0%
!! ATGTTGGTTCTGTCAAACAC+TGG + chr1_1:17650897-17650916 Msa0011720:CDS 40.0%
!! TGTTGGTTCTGTCAAACACT+GGG + chr1_1:17650898-17650917 Msa0011720:CDS 40.0%
GTGATTATTGAGCTTTCCCT+AGG + chr1_1:17651045-17651064 Msa0011720:intron 40.0%
!! TCATGTGGCTTGGTGTTTAT+GGG - chr1_1:17651324-17651343 None:intergenic 40.0%
ATGACCACAAACCCTAACTA+GGG + chr1_1:17651340-17651359 Msa0011720:intron 40.0%
AAGACACCACATAGACTTGA+TGG + chr1_1:17651423-17651442 Msa0011720:intron 40.0%
AGACACCACATAGACTTGAT+GGG + chr1_1:17651424-17651443 Msa0011720:intron 40.0%
TGCACCTCCCATTCATAAAA+AGG + chr1_1:17651501-17651520 Msa0011720:intron 40.0%
! GCCCATGTCCTTTTTATGAA+TGG - chr1_1:17651512-17651531 None:intergenic 40.0%
! TGGTCTTGGAAATGGTTTCT+TGG - chr1_1:17651550-17651569 None:intergenic 40.0%
TAATTCAGAGTTCGATGTGG+TGG - chr1_1:17651570-17651589 None:intergenic 40.0%
! TGTTAACCCTCCGGTTTTTA+GGG - chr1_1:17651607-17651626 None:intergenic 40.0%
! TTGTTAACCCTCCGGTTTTT+AGG - chr1_1:17651608-17651627 None:intergenic 40.0%
CAAGTGATTGATAGGGAACA+AGG + chr1_1:17652005-17652024 Msa0011720:CDS 40.0%
AACAAAGACGAAGTGTGTTC+TGG + chr1_1:17652171-17652190 Msa0011720:three_prime_UTR 40.0%
!! AGCAGAGAAATGGCTTTAAG+TGG + chr1_1:17650740-17650759 Msa0011720:exon 40.0%
!! GCAGAGAAATGGCTTTAAGT+GGG + chr1_1:17650741-17650760 Msa0011720:exon 40.0%
CATGTAGCTAGATTGCATCA+AGG + chr1_1:17650863-17650882 Msa0011720:CDS 40.0%
TAGATTGCATCAAGGTGACT+GGG + chr1_1:17650871-17650890 Msa0011720:CDS 40.0%
!! ATGTTGGTTCTGTCAAACAC+TGG + chr1_1:17650897-17650916 Msa0011720:CDS 40.0%
!! TGTTGGTTCTGTCAAACACT+GGG + chr1_1:17650898-17650917 Msa0011720:CDS 40.0%
GTGATTATTGAGCTTTCCCT+AGG + chr1_1:17651045-17651064 Msa0011720:intron 40.0%
!! TCATGTGGCTTGGTGTTTAT+GGG - chr1_1:17651324-17651343 None:intergenic 40.0%
ATGACCACAAACCCTAACTA+GGG + chr1_1:17651340-17651359 Msa0011720:intron 40.0%
AAGACACCACATAGACTTGA+TGG + chr1_1:17651423-17651442 Msa0011720:intron 40.0%
AGACACCACATAGACTTGAT+GGG + chr1_1:17651424-17651443 Msa0011720:intron 40.0%
TGCACCTCCCATTCATAAAA+AGG + chr1_1:17651501-17651520 Msa0011720:intron 40.0%
! GCCCATGTCCTTTTTATGAA+TGG - chr1_1:17651512-17651531 None:intergenic 40.0%
! TGGTCTTGGAAATGGTTTCT+TGG - chr1_1:17651550-17651569 None:intergenic 40.0%
TAATTCAGAGTTCGATGTGG+TGG - chr1_1:17651570-17651589 None:intergenic 40.0%
! TGTTAACCCTCCGGTTTTTA+GGG - chr1_1:17651607-17651626 None:intergenic 40.0%
! TTGTTAACCCTCCGGTTTTT+AGG - chr1_1:17651608-17651627 None:intergenic 40.0%
CAAGTGATTGATAGGGAACA+AGG + chr1_1:17652005-17652024 Msa0011720:CDS 40.0%
AACAAAGACGAAGTGTGTTC+TGG + chr1_1:17652171-17652190 Msa0011720:three_prime_UTR 40.0%
CTAGATTGCATCAAGGTGAC+TGG + chr1_1:17650870-17650889 Msa0011720:CDS 45.0%
CAAGGTGACTGGGAAAATGT+TGG + chr1_1:17650881-17650900 Msa0011720:CDS 45.0%
CTTTCGAACGATTCGTCCTA+GGG - chr1_1:17651064-17651083 None:intergenic 45.0%
TCTTTCGAACGATTCGTCCT+AGG - chr1_1:17651065-17651084 None:intergenic 45.0%
!! CATGTGGCTTGGTGTTTATG+GGG - chr1_1:17651323-17651342 None:intergenic 45.0%
!! GTCATGTGGCTTGGTGTTTA+TGG - chr1_1:17651325-17651344 None:intergenic 45.0%
AGTTAGGGTTTGTGGTCATG+TGG - chr1_1:17651339-17651358 None:intergenic 45.0%
CATGACCACAAACCCTAACT+AGG + chr1_1:17651339-17651358 Msa0011720:intron 45.0%
AGAGAAAGGCAACTCCAAAG+CGG + chr1_1:17651386-17651405 Msa0011720:intron 45.0%
TAGGTCCCATCAAGTCTATG+TGG - chr1_1:17651432-17651451 None:intergenic 45.0%
!!! GTATTTTGGCTTCGTGGTCT+AGG - chr1_1:17651451-17651470 None:intergenic 45.0%
AGCCAAAATACCCCATCGAT+CGG + chr1_1:17651460-17651479 Msa0011720:intron 45.0%
ATGTGTTGAACCCGATCGAT+GGG - chr1_1:17651474-17651493 None:intergenic 45.0%
! AAAAAGGACATGGGCTACCA+AGG + chr1_1:17651517-17651536 Msa0011720:intron 45.0%
GGTTTCTTGGTAAAGGACCT+TGG - chr1_1:17651537-17651556 None:intergenic 45.0%
GGTCTCCTTTCCCTAAAAAC+CGG + chr1_1:17651594-17651613 Msa0011720:intron 45.0%
TCCTTTCCCTAAAAACCGGA+GGG + chr1_1:17651598-17651617 Msa0011720:intron 45.0%
TACGTGTGAATCCTTGCAGA+AGG + chr1_1:17651864-17651883 Msa0011720:intron 45.0%
GTGATTGATAGGGAACAAGG+TGG + chr1_1:17652008-17652027 Msa0011720:CDS 45.0%
ATTGATAGGGAACAAGGTGG+TGG + chr1_1:17652011-17652030 Msa0011720:CDS 45.0%
TTGATAGGGAACAAGGTGGT+GGG + chr1_1:17652012-17652031 Msa0011720:CDS 45.0%
!! AAGGTGGTGGGATTGTGAAA+TGG + chr1_1:17652024-17652043 Msa0011720:CDS 45.0%
AAAGCCTAGGTATGCCGTAA+AGG + chr1_1:17652316-17652335 Msa0011720:three_prime_UTR 45.0%
TTTGCCTTTACGGCATACCT+AGG - chr1_1:17652323-17652342 None:intergenic 45.0%
CAACATTGTATCGAGGGAGT+TGG + chr1_1:17652360-17652379 Msa0011720:three_prime_UTR 45.0%
CTAGATTGCATCAAGGTGAC+TGG + chr1_1:17650870-17650889 Msa0011720:CDS 45.0%
CAAGGTGACTGGGAAAATGT+TGG + chr1_1:17650881-17650900 Msa0011720:CDS 45.0%
CTTTCGAACGATTCGTCCTA+GGG - chr1_1:17651064-17651083 None:intergenic 45.0%
TCTTTCGAACGATTCGTCCT+AGG - chr1_1:17651065-17651084 None:intergenic 45.0%
!! CATGTGGCTTGGTGTTTATG+GGG - chr1_1:17651323-17651342 None:intergenic 45.0%
!! GTCATGTGGCTTGGTGTTTA+TGG - chr1_1:17651325-17651344 None:intergenic 45.0%
AGTTAGGGTTTGTGGTCATG+TGG - chr1_1:17651339-17651358 None:intergenic 45.0%
CATGACCACAAACCCTAACT+AGG + chr1_1:17651339-17651358 Msa0011720:intron 45.0%
AGAGAAAGGCAACTCCAAAG+CGG + chr1_1:17651386-17651405 Msa0011720:intron 45.0%
TAGGTCCCATCAAGTCTATG+TGG - chr1_1:17651432-17651451 None:intergenic 45.0%
!!! GTATTTTGGCTTCGTGGTCT+AGG - chr1_1:17651451-17651470 None:intergenic 45.0%
AGCCAAAATACCCCATCGAT+CGG + chr1_1:17651460-17651479 Msa0011720:intron 45.0%
ATGTGTTGAACCCGATCGAT+GGG - chr1_1:17651474-17651493 None:intergenic 45.0%
! AAAAAGGACATGGGCTACCA+AGG + chr1_1:17651517-17651536 Msa0011720:intron 45.0%
GGTTTCTTGGTAAAGGACCT+TGG - chr1_1:17651537-17651556 None:intergenic 45.0%
GGTCTCCTTTCCCTAAAAAC+CGG + chr1_1:17651594-17651613 Msa0011720:intron 45.0%
TCCTTTCCCTAAAAACCGGA+GGG + chr1_1:17651598-17651617 Msa0011720:intron 45.0%
TACGTGTGAATCCTTGCAGA+AGG + chr1_1:17651864-17651883 Msa0011720:intron 45.0%
GTGATTGATAGGGAACAAGG+TGG + chr1_1:17652008-17652027 Msa0011720:CDS 45.0%
ATTGATAGGGAACAAGGTGG+TGG + chr1_1:17652011-17652030 Msa0011720:CDS 45.0%
TTGATAGGGAACAAGGTGGT+GGG + chr1_1:17652012-17652031 Msa0011720:CDS 45.0%
!! AAGGTGGTGGGATTGTGAAA+TGG + chr1_1:17652024-17652043 Msa0011720:CDS 45.0%
AAAGCCTAGGTATGCCGTAA+AGG + chr1_1:17652316-17652335 Msa0011720:three_prime_UTR 45.0%
TTTGCCTTTACGGCATACCT+AGG - chr1_1:17652323-17652342 None:intergenic 45.0%
CAACATTGTATCGAGGGAGT+TGG + chr1_1:17652360-17652379 Msa0011720:three_prime_UTR 45.0%
!! ATTTCTTATTAAATAATTTA+TGG + chr1_1:17652204-17652223 Msa0011720:three_prime_UTR 5.0%
!! ATTTCTTATTAAATAATTTA+TGG + chr1_1:17652204-17652223 Msa0011720:three_prime_UTR 5.0%
! TGCAGAGGTAAGGTGGCTTT+TGG - chr1_1:17651287-17651306 None:intergenic 50.0%
AAGCCACCTTACCTCTGCAA+AGG + chr1_1:17651288-17651307 Msa0011720:intron 50.0%
TCTCCACCTTTGCAGAGGTA+AGG - chr1_1:17651297-17651316 None:intergenic 50.0%
TGGTCCCTAGTTAGGGTTTG+TGG - chr1_1:17651347-17651366 None:intergenic 50.0%
! AGTAGGCTGGTCCCTAGTTA+GGG - chr1_1:17651354-17651373 None:intergenic 50.0%
!!! GATGGGGTATTTTGGCTTCG+TGG - chr1_1:17651457-17651476 None:intergenic 50.0%
GCCAAAATACCCCATCGATC+GGG + chr1_1:17651461-17651480 Msa0011720:intron 50.0%
!! ACCCGATCGATGGGGTATTT+TGG - chr1_1:17651465-17651484 None:intergenic 50.0%
TGTGTTGAACCCGATCGATG+GGG - chr1_1:17651473-17651492 None:intergenic 50.0%
CATGTGTTGAACCCGATCGA+TGG - chr1_1:17651475-17651494 None:intergenic 50.0%
GATCGGGTTCAACACATGAC+TGG + chr1_1:17651477-17651496 Msa0011720:intron 50.0%
! CGATGTGGTGGTCTTGGAAA+TGG - chr1_1:17651558-17651577 None:intergenic 50.0%
AGAGTTCGATGTGGTGGTCT+TGG - chr1_1:17651564-17651583 None:intergenic 50.0%
CTCCTTTCCCTAAAAACCGG+AGG + chr1_1:17651597-17651616 Msa0011720:intron 50.0%
!! ACCCTCCGGTTTTTAGGGAA+AGG - chr1_1:17651602-17651621 None:intergenic 50.0%
TAGCCTCTTTGATGGGAACG+TGG + chr1_1:17651950-17651969 Msa0011720:CDS 50.0%
AGCCTCTTTGATGGGAACGT+GGG + chr1_1:17651951-17651970 Msa0011720:CDS 50.0%
! ACGGCATACCTAGGCTTTGA+AGG - chr1_1:17652314-17652333 None:intergenic 50.0%
! TGCAGAGGTAAGGTGGCTTT+TGG - chr1_1:17651287-17651306 None:intergenic 50.0%
AAGCCACCTTACCTCTGCAA+AGG + chr1_1:17651288-17651307 Msa0011720:intron 50.0%
TCTCCACCTTTGCAGAGGTA+AGG - chr1_1:17651297-17651316 None:intergenic 50.0%
TGGTCCCTAGTTAGGGTTTG+TGG - chr1_1:17651347-17651366 None:intergenic 50.0%
! AGTAGGCTGGTCCCTAGTTA+GGG - chr1_1:17651354-17651373 None:intergenic 50.0%
!!! GATGGGGTATTTTGGCTTCG+TGG - chr1_1:17651457-17651476 None:intergenic 50.0%
GCCAAAATACCCCATCGATC+GGG + chr1_1:17651461-17651480 Msa0011720:intron 50.0%
!! ACCCGATCGATGGGGTATTT+TGG - chr1_1:17651465-17651484 None:intergenic 50.0%
TGTGTTGAACCCGATCGATG+GGG - chr1_1:17651473-17651492 None:intergenic 50.0%
CATGTGTTGAACCCGATCGA+TGG - chr1_1:17651475-17651494 None:intergenic 50.0%
GATCGGGTTCAACACATGAC+TGG + chr1_1:17651477-17651496 Msa0011720:intron 50.0%
! CGATGTGGTGGTCTTGGAAA+TGG - chr1_1:17651558-17651577 None:intergenic 50.0%
AGAGTTCGATGTGGTGGTCT+TGG - chr1_1:17651564-17651583 None:intergenic 50.0%
CTCCTTTCCCTAAAAACCGG+AGG + chr1_1:17651597-17651616 Msa0011720:intron 50.0%
!! ACCCTCCGGTTTTTAGGGAA+AGG - chr1_1:17651602-17651621 None:intergenic 50.0%
TAGCCTCTTTGATGGGAACG+TGG + chr1_1:17651950-17651969 Msa0011720:CDS 50.0%
AGCCTCTTTGATGGGAACGT+GGG + chr1_1:17651951-17651970 Msa0011720:CDS 50.0%
! ACGGCATACCTAGGCTTTGA+AGG - chr1_1:17652314-17652333 None:intergenic 50.0%
CCACCTTTGCAGAGGTAAGG+TGG - chr1_1:17651294-17651313 None:intergenic 55.0%
CCACCTTACCTCTGCAAAGG+TGG + chr1_1:17651291-17651310 Msa0011720:intron 55.0%
GGTGTTCTCCACCTTTGCAG+AGG - chr1_1:17651302-17651321 None:intergenic 55.0%
GGGTTTGTGGTCATGTGGCT+TGG - chr1_1:17651334-17651353 None:intergenic 55.0%
! CAGTAGGCTGGTCCCTAGTT+AGG - chr1_1:17651355-17651374 None:intergenic 55.0%
ACTAGGGACCAGCCTACTGA+AGG + chr1_1:17651356-17651375 Msa0011720:intron 55.0%
TCTCTCTTCCCGCCTTCAGT+AGG - chr1_1:17651371-17651390 None:intergenic 55.0%
CTGAAGGCGGGAAGAGAGAA+AGG + chr1_1:17651372-17651391 Msa0011720:intron 55.0%
GAAAGGCAACTCCAAAGCGG+CGG + chr1_1:17651389-17651408 Msa0011720:intron 55.0%
CACCCACGTTCCCATCAAAG+AGG - chr1_1:17651956-17651975 None:intergenic 55.0%
CCACCTTTGCAGAGGTAAGG+TGG - chr1_1:17651294-17651313 None:intergenic 55.0%
CCACCTTACCTCTGCAAAGG+TGG + chr1_1:17651291-17651310 Msa0011720:intron 55.0%
GGTGTTCTCCACCTTTGCAG+AGG - chr1_1:17651302-17651321 None:intergenic 55.0%
GGGTTTGTGGTCATGTGGCT+TGG - chr1_1:17651334-17651353 None:intergenic 55.0%
! CAGTAGGCTGGTCCCTAGTT+AGG - chr1_1:17651355-17651374 None:intergenic 55.0%
ACTAGGGACCAGCCTACTGA+AGG + chr1_1:17651356-17651375 Msa0011720:intron 55.0%
TCTCTCTTCCCGCCTTCAGT+AGG - chr1_1:17651371-17651390 None:intergenic 55.0%
CTGAAGGCGGGAAGAGAGAA+AGG + chr1_1:17651372-17651391 Msa0011720:intron 55.0%
GAAAGGCAACTCCAAAGCGG+CGG + chr1_1:17651389-17651408 Msa0011720:intron 55.0%
CACCCACGTTCCCATCAAAG+AGG - chr1_1:17651956-17651975 None:intergenic 55.0%
AGGGACCAGCCTACTGAAGG+CGG + chr1_1:17651359-17651378 Msa0011720:intron 60.0%
TCTTCCCGCCTTCAGTAGGC+TGG - chr1_1:17651367-17651386 None:intergenic 60.0%
ATGATTCTCGGCCGCCGCTT+TGG - chr1_1:17651403-17651422 None:intergenic 60.0%
AGGGACCAGCCTACTGAAGG+CGG + chr1_1:17651359-17651378 Msa0011720:intron 60.0%
TCTTCCCGCCTTCAGTAGGC+TGG - chr1_1:17651367-17651386 None:intergenic 60.0%
ATGATTCTCGGCCGCCGCTT+TGG - chr1_1:17651403-17651422 None:intergenic 60.0%
GGGACCAGCCTACTGAAGGC+GGG + chr1_1:17651360-17651379 Msa0011720:intron 65.0%
GGGACCAGCCTACTGAAGGC+GGG + chr1_1:17651360-17651379 Msa0011720:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 17650717 17652460 17650717 ID=Msa0011720;Name=Msa0011720
chr1_1 mRNA 17650717 17652460 17650717 ID=Msa0011720-mRNA-1;Parent=Msa0011720;Name=Msa0011720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=32|1|1|1|1|1|2|300|153
chr1_1 exon 17650717 17650932 17650717 ID=Msa0011720-mRNA-1:exon:6412;Parent=Msa0011720-mRNA-1
chr1_1 exon 17651883 17652460 17651883 ID=Msa0011720-mRNA-1:exon:6413;Parent=Msa0011720-mRNA-1
chr1_1 five_prime_UTR 17650717 17650748 17650717 ID=Msa0011720-mRNA-1:five_prime_utr;Parent=Msa0011720-mRNA-1
chr1_1 CDS 17650749 17650932 17650749 ID=Msa0011720-mRNA-1:cds;Parent=Msa0011720-mRNA-1
chr1_1 CDS 17651883 17652160 17651883 ID=Msa0011720-mRNA-1:cds;Parent=Msa0011720-mRNA-1
chr1_1 three_prime_UTR 17652161 17652460 17652161 ID=Msa0011720-mRNA-1:three_prime_utr;Parent=Msa0011720-mRNA-1
Gene Sequence

>Msa0011720

ATGGCTTTAAGTGGGAAAGTGTTCACTGAAATAGAGATTCAAGCACCAGCTGCTAAGTTTTATAATGTTTGCAAGAAGCAACTTCAACAACTTCCTAATATCTCTAATGACATACATGTAGCTAGATTGCATCAAGGTGACTGGGAAAATGTTGGTTCTGTCAAACACTGGGAATATACAATAGAAGGAAAAAAAATAATTGCAAAAGAAAAAATTGAGACTATAGATGATGACAATAAGATAATCAAATATAGCCTCTTTGATGGGAACGTGGGTGAGAATTACAAGAGTTTAAAGGCAATATTACAAGTGATTGATAGGGAACAAGGTGGTGGGATTGTGAAATGGACTTTTGAATATGAGAAGTTAAAGCAAGATATTACAATTGCATCTCCTAATTCATACTTAGACTTTTCTGCAAAGATCACAAAAGAAATTGATGCTCATATTGTCATGGAATAG

Protein sequence

>Msa0011720

MALSGKVFTEIEIQAPAAKFYNVCKKQLQQLPNISNDIHVARLHQGDWENVGSVKHWEYTIEGKKIIAKEKIETIDDDNKIIKYSLFDGNVGENYKSLKAILQVIDREQGGGIVKWTFEYEKLKQDITIASPNSYLDFSAKITKEIDAHIVME*