Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757520 | sp|Q9SDY5|RCE1_ARATH | 81.250 | 144 | 22 | 1 | 3 | 141 | 38 | 181 | 3.96e-85 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757520 | I3SEF8 | 93.056 | 144 | 5 | 1 | 3 | 141 | 37 | 180 | 1.53e-92 | 275 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0757520 | 0.806804 | 6.884058e-50 | -8.615850e-47 |
| Msa0607340 | Msa0757520 | 0.807537 | 4.815134e-50 | -8.615850e-47 |
| Msa0757450 | Msa0757520 | 0.846116 | 2.658545e-59 | -8.615850e-47 |
| Msa0757500 | Msa0757520 | 0.825750 | 3.952852e-54 | -8.615850e-47 |
| Msa0757520 | Msa0833860 | 0.800264 | 1.563717e-48 | -8.615850e-47 |
| Msa0757520 | Msa0837350 | 0.841557 | 4.422065e-58 | -8.615850e-47 |
| Msa0757520 | Msa1270960 | 0.802035 | 6.791388e-49 | -8.615850e-47 |
| Msa0294560 | Msa0757520 | 0.828058 | 1.110325e-54 | -8.615850e-47 |
| Msa0553220 | Msa0757520 | 0.800989 | 1.112287e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757520 | MtrunA17_Chr5g0403591 | 93.056 | 144 | 5 | 1 | 3 | 141 | 37 | 180 | 2.95e-96 | 275 |
| Msa0757520 | MtrunA17_Chr4g0037011 | 39.024 | 123 | 69 | 2 | 10 | 127 | 18 | 139 | 8.51e-24 | 90.1 |
| Msa0757520 | MtrunA17_Chr1g0154011 | 36.585 | 123 | 72 | 2 | 10 | 127 | 18 | 139 | 2.61e-22 | 86.3 |
| Msa0757520 | MtrunA17_Chr5g0432831 | 36.585 | 123 | 72 | 2 | 10 | 127 | 18 | 139 | 8.45e-22 | 85.1 |
| Msa0757520 | MtrunA17_Chr3g0108261 | 36.585 | 123 | 72 | 2 | 10 | 127 | 18 | 139 | 9.01e-22 | 84.7 |
| Msa0757520 | MtrunA17_Chr7g0275361 | 35.772 | 123 | 73 | 2 | 10 | 127 | 18 | 139 | 2.38e-21 | 84.0 |
| Msa0757520 | MtrunA17_Chr8g0369311 | 36.607 | 112 | 65 | 2 | 22 | 127 | 84 | 195 | 1.61e-20 | 83.2 |
| Msa0757520 | MtrunA17_Chr4g0060351 | 29.825 | 114 | 75 | 1 | 29 | 137 | 39 | 152 | 7.73e-19 | 77.4 |
| Msa0757520 | MtrunA17_Chr2g0316201 | 38.095 | 105 | 59 | 2 | 20 | 118 | 30 | 134 | 2.92e-18 | 75.9 |
| Msa0757520 | MtrunA17_Chr2g0316211 | 38.095 | 105 | 59 | 2 | 20 | 118 | 30 | 134 | 4.08e-18 | 75.5 |
| Msa0757520 | MtrunA17_Chr8g0362321 | 25.874 | 143 | 100 | 2 | 1 | 137 | 10 | 152 | 5.32e-18 | 75.1 |
| Msa0757520 | MtrunA17_Chr4g0059291 | 31.304 | 115 | 71 | 3 | 22 | 128 | 27 | 141 | 6.62e-15 | 67.8 |
| Msa0757520 | MtrunA17_Chr5g0396451 | 30.841 | 107 | 69 | 1 | 17 | 118 | 55 | 161 | 5.51e-14 | 65.5 |
| Msa0757520 | MtrunA17_Chr4g0038891 | 35.052 | 97 | 55 | 2 | 35 | 123 | 73 | 169 | 5.90e-14 | 65.5 |
| Msa0757520 | MtrunA17_Chr3g0139901 | 30.769 | 104 | 65 | 3 | 22 | 118 | 32 | 135 | 2.48e-13 | 63.2 |
| Msa0757520 | MtrunA17_Chr1g0199951 | 27.907 | 129 | 83 | 2 | 17 | 140 | 65 | 188 | 7.09e-13 | 62.8 |
| Msa0757520 | MtrunA17_Chr3g0131871 | 37.838 | 74 | 45 | 1 | 38 | 110 | 47 | 120 | 1.19e-12 | 62.0 |
| Msa0757520 | MtrunA17_Chr8g0348701 | 32.692 | 104 | 61 | 4 | 33 | 128 | 39 | 141 | 1.20e-12 | 62.0 |
| Msa0757520 | MtrunA17_Chr4g0031181 | 28.333 | 120 | 68 | 2 | 29 | 130 | 40 | 159 | 1.02e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757520 | AT4G36800.2 | 81.250 | 144 | 22 | 1 | 3 | 141 | 38 | 181 | 4.02e-86 | 249 |
| Msa0757520 | AT4G36800.1 | 81.250 | 144 | 22 | 1 | 3 | 141 | 38 | 181 | 4.02e-86 | 249 |
| Msa0757520 | AT2G18600.1 | 79.861 | 144 | 24 | 1 | 3 | 141 | 39 | 182 | 9.12e-82 | 238 |
| Msa0757520 | AT2G18600.2 | 79.861 | 144 | 24 | 1 | 3 | 141 | 39 | 182 | 9.12e-82 | 238 |
| Msa0757520 | AT3G08690.2 | 39.286 | 112 | 62 | 2 | 22 | 127 | 28 | 139 | 5.31e-22 | 85.9 |
| Msa0757520 | AT3G08690.1 | 39.286 | 112 | 62 | 2 | 22 | 127 | 28 | 139 | 5.31e-22 | 85.9 |
| Msa0757520 | AT5G56150.1 | 41.237 | 97 | 56 | 1 | 10 | 106 | 18 | 113 | 6.58e-22 | 85.5 |
| Msa0757520 | AT5G41700.4 | 34.959 | 123 | 75 | 1 | 10 | 127 | 18 | 140 | 1.05e-21 | 85.1 |
| Msa0757520 | AT4G27960.1 | 36.585 | 123 | 72 | 2 | 10 | 127 | 18 | 139 | 1.13e-21 | 85.1 |
| Msa0757520 | AT1G64230.2 | 35.772 | 123 | 73 | 2 | 10 | 127 | 18 | 139 | 2.04e-21 | 84.3 |
| Msa0757520 | AT1G64230.1 | 35.772 | 123 | 73 | 2 | 10 | 127 | 18 | 139 | 2.04e-21 | 84.3 |
| Msa0757520 | AT5G53300.2 | 35.772 | 123 | 73 | 2 | 10 | 127 | 18 | 139 | 2.70e-21 | 84.0 |
| Msa0757520 | AT5G53300.4 | 35.772 | 123 | 73 | 2 | 10 | 127 | 18 | 139 | 2.70e-21 | 84.0 |
| Msa0757520 | AT5G53300.1 | 35.772 | 123 | 73 | 2 | 10 | 127 | 18 | 139 | 2.70e-21 | 84.0 |
| Msa0757520 | AT2G16740.1 | 34.328 | 134 | 80 | 3 | 1 | 127 | 7 | 139 | 3.66e-21 | 83.6 |
| Msa0757520 | AT4G27960.2 | 36.585 | 123 | 72 | 2 | 10 | 127 | 48 | 169 | 3.78e-21 | 84.3 |
| Msa0757520 | AT3G08700.2 | 41.837 | 98 | 55 | 2 | 10 | 106 | 18 | 114 | 4.55e-21 | 83.6 |
| Msa0757520 | AT3G08700.1 | 41.837 | 98 | 55 | 2 | 10 | 106 | 18 | 114 | 4.55e-21 | 83.6 |
| Msa0757520 | AT1G64230.3 | 36.607 | 112 | 65 | 2 | 22 | 127 | 37 | 148 | 6.15e-21 | 83.2 |
| Msa0757520 | AT5G56150.2 | 42.105 | 95 | 53 | 2 | 10 | 104 | 18 | 110 | 8.13e-21 | 81.6 |
| Msa0757520 | AT1G64230.5 | 36.607 | 112 | 65 | 2 | 22 | 127 | 70 | 181 | 1.93e-20 | 82.8 |
| Msa0757520 | AT1G64230.4 | 36.607 | 112 | 65 | 2 | 22 | 127 | 70 | 181 | 1.93e-20 | 82.8 |
| Msa0757520 | AT5G41700.5 | 34.959 | 123 | 74 | 2 | 10 | 127 | 18 | 139 | 2.03e-20 | 81.6 |
| Msa0757520 | AT5G41700.2 | 34.959 | 123 | 74 | 2 | 10 | 127 | 18 | 139 | 2.03e-20 | 81.6 |
| Msa0757520 | AT5G41700.1 | 34.959 | 123 | 74 | 2 | 10 | 127 | 18 | 139 | 2.03e-20 | 81.6 |
| Msa0757520 | AT5G53300.3 | 39.560 | 91 | 54 | 1 | 10 | 100 | 18 | 107 | 1.39e-18 | 75.9 |
| Msa0757520 | AT2G02760.1 | 26.573 | 143 | 99 | 2 | 1 | 137 | 10 | 152 | 3.90e-18 | 75.9 |
| Msa0757520 | AT2G02760.2 | 26.573 | 143 | 99 | 2 | 1 | 137 | 10 | 152 | 3.90e-18 | 75.9 |
| Msa0757520 | AT2G02760.4 | 26.573 | 143 | 99 | 2 | 1 | 137 | 10 | 152 | 3.90e-18 | 75.9 |
| Msa0757520 | AT2G02760.3 | 26.573 | 143 | 99 | 2 | 1 | 137 | 10 | 152 | 3.90e-18 | 75.9 |
| Msa0757520 | AT1G78870.2 | 38.095 | 105 | 59 | 2 | 20 | 118 | 30 | 134 | 5.00e-18 | 75.9 |
| Msa0757520 | AT1G16890.2 | 37.143 | 105 | 60 | 2 | 20 | 118 | 30 | 134 | 1.35e-17 | 74.7 |
| Msa0757520 | AT1G14400.1 | 26.573 | 143 | 99 | 2 | 1 | 137 | 10 | 152 | 1.38e-17 | 74.7 |
| Msa0757520 | AT1G14400.2 | 26.573 | 143 | 99 | 2 | 1 | 137 | 10 | 152 | 1.38e-17 | 74.7 |
| Msa0757520 | AT1G16890.3 | 37.143 | 105 | 60 | 2 | 20 | 118 | 39 | 143 | 2.05e-17 | 74.3 |
| Msa0757520 | AT1G16890.1 | 37.895 | 95 | 54 | 1 | 29 | 118 | 7 | 101 | 2.58e-17 | 73.2 |
| Msa0757520 | AT1G78870.4 | 37.895 | 95 | 54 | 1 | 29 | 118 | 7 | 101 | 3.16e-17 | 72.8 |
| Msa0757520 | AT5G41700.3 | 40.698 | 86 | 50 | 1 | 10 | 95 | 18 | 102 | 3.40e-17 | 73.2 |
| Msa0757520 | AT1G78870.3 | 43.590 | 78 | 43 | 1 | 20 | 96 | 30 | 107 | 2.14e-16 | 70.5 |
| Msa0757520 | AT5G62540.1 | 28.333 | 120 | 80 | 2 | 22 | 135 | 31 | 150 | 8.81e-16 | 69.7 |
| Msa0757520 | AT1G78870.1 | 37.500 | 96 | 54 | 2 | 29 | 118 | 7 | 102 | 1.90e-15 | 68.2 |
| Msa0757520 | AT5G41340.1 | 36.538 | 104 | 57 | 4 | 33 | 128 | 39 | 141 | 6.41e-15 | 68.6 |
| Msa0757520 | AT1G63800.1 | 35.577 | 104 | 58 | 4 | 33 | 128 | 39 | 141 | 1.09e-14 | 67.8 |
| Msa0757520 | AT1G63800.2 | 35.577 | 104 | 58 | 4 | 33 | 128 | 24 | 126 | 1.33e-14 | 67.4 |
| Msa0757520 | AT3G13550.2 | 32.407 | 108 | 70 | 2 | 1 | 106 | 42 | 148 | 1.48e-14 | 67.0 |
| Msa0757520 | AT3G13550.1 | 31.579 | 114 | 75 | 2 | 1 | 112 | 42 | 154 | 1.61e-14 | 67.4 |
| Msa0757520 | AT5G41340.2 | 34.000 | 100 | 59 | 2 | 36 | 128 | 7 | 106 | 2.89e-14 | 65.9 |
| Msa0757520 | AT3G20060.2 | 32.967 | 91 | 56 | 1 | 35 | 120 | 32 | 122 | 3.50e-14 | 65.5 |
| Msa0757520 | AT5G25760.1 | 32.039 | 103 | 63 | 3 | 23 | 118 | 33 | 135 | 6.05e-14 | 65.1 |
| Msa0757520 | AT5G25760.2 | 32.039 | 103 | 63 | 3 | 23 | 118 | 33 | 135 | 6.05e-14 | 65.1 |
| Msa0757520 | AT3G20060.1 | 33.708 | 89 | 54 | 1 | 35 | 118 | 77 | 165 | 7.67e-14 | 65.5 |
| Msa0757520 | AT1G36340.2 | 30.400 | 125 | 81 | 2 | 9 | 127 | 21 | 145 | 8.34e-14 | 64.7 |
| Msa0757520 | AT1G36340.1 | 30.400 | 125 | 81 | 2 | 9 | 127 | 21 | 145 | 8.34e-14 | 64.7 |
| Msa0757520 | AT2G46030.5 | 32.174 | 115 | 70 | 3 | 22 | 128 | 27 | 141 | 2.57e-13 | 63.9 |
| Msa0757520 | AT2G46030.1 | 32.174 | 115 | 70 | 3 | 22 | 128 | 27 | 141 | 2.57e-13 | 63.9 |
| Msa0757520 | AT5G50870.1 | 34.375 | 96 | 57 | 2 | 38 | 127 | 47 | 142 | 3.52e-13 | 63.9 |
| Msa0757520 | AT2G46030.4 | 32.174 | 115 | 70 | 3 | 22 | 128 | 30 | 144 | 4.19e-13 | 63.5 |
| Msa0757520 | AT2G46030.2 | 32.174 | 115 | 70 | 3 | 22 | 128 | 30 | 144 | 4.19e-13 | 63.5 |
| Msa0757520 | AT3G24515.1 | 35.417 | 96 | 54 | 2 | 19 | 106 | 36 | 131 | 6.21e-13 | 65.1 |
| Msa0757520 | AT1G50490.1 | 32.584 | 89 | 55 | 1 | 35 | 118 | 76 | 164 | 8.07e-13 | 62.8 |
| Msa0757520 | AT5G50870.2 | 37.838 | 74 | 45 | 1 | 38 | 110 | 47 | 120 | 9.25e-13 | 63.2 |
| Msa0757520 | AT3G24515.3 | 38.462 | 78 | 44 | 1 | 33 | 106 | 79 | 156 | 1.06e-12 | 64.3 |
| Msa0757520 | AT2G46030.3 | 32.456 | 114 | 69 | 3 | 22 | 127 | 99 | 212 | 1.08e-12 | 63.5 |
| Msa0757520 | AT3G57870.1 | 29.060 | 117 | 75 | 3 | 19 | 127 | 34 | 150 | 7.97e-11 | 57.0 |
Find 38 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTTCCAAGTCAATATT+TGG | 0.142980 | 5_2:-12400026 | None:intergenic |
| CAGCAGCGGCATCATGATTC+AGG | 0.258270 | 5_2:-12400246 | None:intergenic |
| ACATTAGATTCAAACATCTT+TGG | 0.268686 | 5_2:-12400283 | None:intergenic |
| AGATGACAGTGTTTATATTA+AGG | 0.283684 | 5_2:-12400088 | None:intergenic |
| AATATAAACACTGTCATCTA+TGG | 0.349971 | 5_2:+12400092 | Msa0757520:CDS |
| TTTGTCTTGCACTTCACCTT+GGG | 0.370105 | 5_2:-12399878 | None:intergenic |
| GGGTGCTTCATGTGGATAGA+TGG | 0.399776 | 5_2:-12399858 | None:intergenic |
| CTTTGTCTTGCACTTCACCT+TGG | 0.407733 | 5_2:-12399879 | None:intergenic |
| CATCAGGTCATCTTTGCCAT+TGG | 0.416464 | 5_2:-12399532 | None:intergenic |
| ATCAGGTCATCTTTGCCATT+GGG | 0.429309 | 5_2:-12399531 | None:intergenic |
| TCAAAACTTCGAAGTTCATC+AGG | 0.454455 | 5_2:-12399548 | None:intergenic |
| AATTGCATGGTGCAAGACTT+TGG | 0.456157 | 5_2:-12399507 | None:intergenic |
| GGCAATGTCTGGTGGGTATG+TGG | 0.481350 | 5_2:+12400312 | Msa0757520:CDS |
| TACAAGTAATATCCATCATC+GGG | 0.483744 | 5_2:-12399576 | None:intergenic |
| TTCACCTTGGGTGCTTCATG+TGG | 0.501905 | 5_2:-12399866 | None:intergenic |
| CATCCAAATATTGACTTGGA+AGG | 0.507990 | 5_2:+12400023 | Msa0757520:CDS |
| ACAGTGTTTATATTAAGGAC+AGG | 0.514717 | 5_2:-12400083 | None:intergenic |
| TCAACATCTTAAGAGAAGAC+TGG | 0.523814 | 5_2:+12400057 | Msa0757520:CDS |
| TTACAAGTAATATCCATCAT+CGG | 0.536160 | 5_2:-12399577 | None:intergenic |
| TGGCTTGTATCATCTCTTCA+CGG | 0.539377 | 5_2:+12400112 | Msa0757520:CDS |
| AGCAGCGGCATCATGATTCA+GGG | 0.539634 | 5_2:-12400245 | None:intergenic |
| CTACCATCCAAATATTGACT+TGG | 0.541780 | 5_2:+12400019 | Msa0757520:CDS |
| ATAGATGGGAGACACATTGA+AGG | 0.544925 | 5_2:-12399843 | None:intergenic |
| CTTCCAAGTCAATATTTGGA+TGG | 0.548559 | 5_2:-12400022 | None:intergenic |
| TTTGCCATTGGGAAATTGCA+TGG | 0.574210 | 5_2:-12399520 | None:intergenic |
| AATGTGAGGAGGGCAATGTC+TGG | 0.586922 | 5_2:+12400301 | Msa0757520:CDS |
| GGTGCTTCATGTGGATAGAT+GGG | 0.590678 | 5_2:-12399857 | None:intergenic |
| GTGAGGAGGGCAATGTCTGG+TGG | 0.597624 | 5_2:+12400304 | Msa0757520:CDS |
| GTTTGAATCTAATGTGAGGA+GGG | 0.602029 | 5_2:+12400291 | Msa0757520:CDS |
| TGCACCATGCAATTTCCCAA+TGG | 0.605830 | 5_2:+12399516 | Msa0757520:CDS |
| CTATCCACATGAAGCACCCA+AGG | 0.621344 | 5_2:+12399862 | Msa0757520:CDS |
| GAGCATTTCCAAATTATGCA+CGG | 0.621445 | 5_2:+12396687 | None:intergenic |
| TGAGGAGGGCAATGTCTGGT+GGG | 0.629398 | 5_2:+12400305 | Msa0757520:CDS |
| CAAGGTGAAGTGCAAGACAA+AGG | 0.630470 | 5_2:+12399880 | Msa0757520:CDS |
| TGTTTGAATCTAATGTGAGG+AGG | 0.637414 | 5_2:+12400290 | Msa0757520:CDS |
| GCAGCGGCATCATGATTCAG+GGG | 0.671229 | 5_2:-12400244 | None:intergenic |
| AGATGTTTGAATCTAATGTG+AGG | 0.682109 | 5_2:+12400287 | Msa0757520:CDS |
| ATTATCTCTCAAGACAGCAG+CGG | 0.713092 | 5_2:-12400260 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr5_2:12396878-12396897 | Msa0757520:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr5_2:12396879-12396898 | Msa0757520:intron | 10.0% |
| !!! | NNNNNNNNNNATGATACTTT+TGG | + | chr5_2:12398473-12398492 | Msa0757520:intron | 10.0% |
| !!! | TGTTGTTTTATTATTTTTTT+CGG | + | chr5_2:12398744-12398763 | Msa0757520:intron | 10.0% |
| !! | TACTTTATGATAAAATAAAC+TGG | - | chr5_2:12396810-12396829 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr5_2:12396880-12396899 | Msa0757520:intron | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | + | chr5_2:12396946-12396965 | Msa0757520:intron | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | + | chr5_2:12396947-12396966 | Msa0757520:intron | 15.0% |
| !!! | ACACTTTTTTTTTAGAAAAT+GGG | + | chr5_2:12397017-12397036 | Msa0757520:intron | 15.0% |
| !! | ATAAAAAAAAAAAGTTGAAC+AGG | - | chr5_2:12397170-12397189 | None:intergenic | 15.0% |
| !! | TAATACATGCAAAAATTAAA+AGG | + | chr5_2:12397388-12397407 | Msa0757520:intron | 15.0% |
| !! | TATTGAAAACTTATATGAAT+AGG | + | chr5_2:12397464-12397483 | Msa0757520:intron | 15.0% |
| !!! | AAATTTAAAAGATTTTTGTC+GGG | - | chr5_2:12397504-12397523 | None:intergenic | 15.0% |
| !!! | CAAATTTAAAAGATTTTTGT+CGG | - | chr5_2:12397505-12397524 | None:intergenic | 15.0% |
| !! | TAAGTTCGAATTATATAATA+CGG | - | chr5_2:12397641-12397660 | None:intergenic | 15.0% |
| !! | AATCACTAATAAAATTACTA+AGG | - | chr5_2:12399217-12399236 | None:intergenic | 15.0% |
| !!! | AAAATTGATTCTTGTTTTTA+AGG | + | chr5_2:12399632-12399651 | Msa0757520:intron | 15.0% |
| !!! | TTTATATCATGTTATTTGTT+TGG | + | chr5_2:12399676-12399695 | Msa0757520:intron | 15.0% |
| !!! | AAGACTTCATAATGATTTTA+GGG | - | chr5_2:12396734-12396753 | None:intergenic | 20.0% |
| !!! | TAAGACTTCATAATGATTTT+AGG | - | chr5_2:12396735-12396754 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr5_2:12396903-12396922 | Msa0757520:intron | 20.0% |
| !!! | TTGAAATGACTTAGTTATTT+TGG | + | chr5_2:12396993-12397012 | Msa0757520:intron | 20.0% |
| !!! | TGAAATGACTTAGTTATTTT+GGG | + | chr5_2:12396994-12397013 | Msa0757520:intron | 20.0% |
| !!! | GACACTTTTTTTTTAGAAAA+TGG | + | chr5_2:12397016-12397035 | Msa0757520:intron | 20.0% |
| !!! | AATATAATTTGTGTTTTACC+AGG | + | chr5_2:12397685-12397704 | Msa0757520:intron | 20.0% |
| !!! | AGACATTTAAAGTTAAATTG+TGG | + | chr5_2:12397864-12397883 | Msa0757520:intron | 20.0% |
| !! | ATATATAGTGTATCTTTATG+AGG | - | chr5_2:12398205-12398224 | None:intergenic | 20.0% |
| !! | TTTATGTGAAGTTATTGAAA+GGG | - | chr5_2:12398309-12398328 | None:intergenic | 20.0% |
| !! | ATTTATGTGAAGTTATTGAA+AGG | - | chr5_2:12398310-12398329 | None:intergenic | 20.0% |
| !!! | NNNNTTTTCATTAGAGATTG+AGG | - | chr5_2:12398367-12398386 | None:intergenic | 20.0% |
| !!! | ATTTTATGCAATGTTATTAG+AGG | - | chr5_2:12398697-12398716 | None:intergenic | 20.0% |
| !! | TTGCATAAAATGAGTAAAAT+TGG | + | chr5_2:12398706-12398725 | Msa0757520:intron | 20.0% |
| !! | TTAAATATTGTGTATTCTCA+CGG | + | chr5_2:12398947-12398966 | Msa0757520:intron | 20.0% |
| !! | AACAGAAGAAAATCAAATAT+AGG | - | chr5_2:12399014-12399033 | None:intergenic | 20.0% |
| !!! | TATTAGTGATTTTTCATGAA+AGG | + | chr5_2:12399226-12399245 | Msa0757520:intron | 20.0% |
| !! | ACTTGTATAACAAAATAAAG+TGG | - | chr5_2:12399441-12399460 | None:intergenic | 20.0% |
| !!! | CAAGAATCAATTTTAAAGTT+AGG | - | chr5_2:12399626-12399645 | None:intergenic | 20.0% |
| !! | GCTAAATTAAATGTATAATC+TGG | + | chr5_2:12399718-12399737 | Msa0757520:intron | 20.0% |
| !! | TAAAACAGAATATGAAAACA+AGG | - | chr5_2:12399958-12399977 | None:intergenic | 20.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr5_2:12396902-12396921 | Msa0757520:intron | 25.0% |
| !! | GAAGACTTCAAAATGATTTT+AGG | - | chr5_2:12397116-12397135 | None:intergenic | 25.0% |
| ! | TAACCTTAAACTTTCGTTTA+CGG | - | chr5_2:12397209-12397228 | None:intergenic | 25.0% |
| ! | AGATAGCAACAAGAAATAAA+TGG | + | chr5_2:12397527-12397546 | Msa0757520:intron | 25.0% |
| !! | AAAAACCCTAAAAGCTTTTT+GGG | - | chr5_2:12397562-12397581 | None:intergenic | 25.0% |
| ! | GAATTATATAATACGGACAT+GGG | - | chr5_2:12397634-12397653 | None:intergenic | 25.0% |
| ! | AGACATAGTATATAGTTTAG+AGG | + | chr5_2:12397762-12397781 | Msa0757520:intron | 25.0% |
| !! | ATGATTTTCTAACCCTAAAT+TGG | + | chr5_2:12398104-12398123 | Msa0757520:intron | 25.0% |
| ! | TTGGTTTACTTAACTCTTAT+TGG | + | chr5_2:12398163-12398182 | Msa0757520:intron | 25.0% |
| ! | TGGTTTACTTAACTCTTATT+GGG | + | chr5_2:12398164-12398183 | Msa0757520:intron | 25.0% |
| ! | TTTGTGGAATTAGAAAATAG+TGG | - | chr5_2:12398278-12398297 | None:intergenic | 25.0% |
| !! | TGAAAGGGATAATAATTTTG+TGG | - | chr5_2:12398294-12398313 | None:intergenic | 25.0% |
| !!! | ATTTTGGTAATTTGAGATGA+AGG | - | chr5_2:12398334-12398353 | None:intergenic | 25.0% |
| ! | AAATGAGTAAAATTGGACAA+AGG | + | chr5_2:12398713-12398732 | Msa0757520:intron | 25.0% |
| ! | TCATTCAACAATAAACTATC+TGG | - | chr5_2:12398919-12398938 | None:intergenic | 25.0% |
| !!! | TATTTGATTTTCTTCTGTTC+TGG | + | chr5_2:12399015-12399034 | Msa0757520:intron | 25.0% |
| ! | AAGAAAAAGAACAATCACAT+GGG | - | chr5_2:12399114-12399133 | None:intergenic | 25.0% |
| ! | AAAGAAAAAGAACAATCACA+TGG | - | chr5_2:12399115-12399134 | None:intergenic | 25.0% |
| !! | TGATTGTTCTTTTTCTTTCT+TGG | + | chr5_2:12399117-12399136 | Msa0757520:intron | 25.0% |
| !! | GATTGTTCTTTTTCTTTCTT+GGG | + | chr5_2:12399118-12399137 | Msa0757520:intron | 25.0% |
| ! | AAGCCTTCATTAAATATACT+GGG | - | chr5_2:12399158-12399177 | None:intergenic | 25.0% |
| ! | AAAGCCTTCATTAAATATAC+TGG | - | chr5_2:12399159-12399178 | None:intergenic | 25.0% |
| ! | TGTATAACAAAATAAAGTGG+CGG | - | chr5_2:12399438-12399457 | None:intergenic | 25.0% |
| ! | TTACAAGTAATATCCATCAT+CGG | - | chr5_2:12399580-12399599 | None:intergenic | 25.0% |
| ! | AGATGACAGTGTTTATATTA+AGG | - | chr5_2:12400091-12400110 | None:intergenic | 25.0% |
| ! | AATATAAACACTGTCATCTA+TGG | + | chr5_2:12400092-12400111 | Msa0757520:CDS | 25.0% |
| !!! | CTCTGTTTTTTAACATATCA+GGG | + | chr5_2:12400140-12400159 | Msa0757520:intron | 25.0% |
| ! | ACATTAGATTCAAACATCTT+TGG | - | chr5_2:12400286-12400305 | None:intergenic | 25.0% |
| ATCTGTATGAAAAACCAAAC+TGG | - | chr5_2:12396858-12396877 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr5_2:12396887-12396906 | Msa0757520:intron | 30.0% | |
| ! | TGAAAACCCAAAAAGCTTTT+AGG | + | chr5_2:12397553-12397572 | Msa0757520:intron | 30.0% |
| ! | GAAAACCCAAAAAGCTTTTA+GGG | + | chr5_2:12397554-12397573 | Msa0757520:intron | 30.0% |
| ! | GAAAAACCCTAAAAGCTTTT+TGG | - | chr5_2:12397563-12397582 | None:intergenic | 30.0% |
| !! | GGTATTTTGAGAATTTTGGA+GGG | - | chr5_2:12397613-12397632 | None:intergenic | 30.0% |
| !! | CATGGGTATTTTGAGAATTT+TGG | - | chr5_2:12397617-12397636 | None:intergenic | 30.0% |
| CGAATTATATAATACGGACA+TGG | - | chr5_2:12397635-12397654 | None:intergenic | 30.0% | |
| TAAATTGTGGTACAAGAAGA+TGG | + | chr5_2:12397877-12397896 | Msa0757520:intron | 30.0% | |
| AGTAGTAGTCTTCCAATTTA+GGG | - | chr5_2:12398119-12398138 | None:intergenic | 30.0% | |
| !!! | TTGAGGAGTAAAAGGTATTT+TGG | - | chr5_2:12398350-12398369 | None:intergenic | 30.0% |
| ATTAGAGATTGAGGAGTAAA+AGG | - | chr5_2:12398358-12398377 | None:intergenic | 30.0% | |
| TAAAATCCACCATAAGAGTA+TGG | - | chr5_2:12398649-12398668 | None:intergenic | 30.0% | |
| !!! | ATACTCTTATGGTGGATTTT+AGG | + | chr5_2:12398648-12398667 | Msa0757520:intron | 30.0% |
| AACAAGTAGAGATAAGTGAA+TGG | + | chr5_2:12398783-12398802 | Msa0757520:intron | 30.0% | |
| TTTCCGTGAAAATTTACTGT+AGG | + | chr5_2:12398867-12398886 | Msa0757520:intron | 30.0% | |
| GGTTATCACTTAACAAGTAT+AGG | - | chr5_2:12399077-12399096 | None:intergenic | 30.0% | |
| ! | TACTTGTTAAGTGATAACCT+TGG | + | chr5_2:12399078-12399097 | Msa0757520:intron | 30.0% |
| ! | ACTTGTTAAGTGATAACCTT+GGG | + | chr5_2:12399079-12399098 | Msa0757520:intron | 30.0% |
| TCTCCCAGTATATTTAATGA+AGG | + | chr5_2:12399152-12399171 | Msa0757520:intron | 30.0% | |
| ! | AGGCTTTTTATCTTGAGAAT+TGG | + | chr5_2:12399172-12399191 | Msa0757520:intron | 30.0% |
| ATGAAAGGAAACTTCTTTAG+TGG | + | chr5_2:12399241-12399260 | Msa0757520:intron | 30.0% | |
| TACATGTTTAAGCTGACTAA+TGG | - | chr5_2:12399288-12399307 | None:intergenic | 30.0% | |
| TACAAGTAATATCCATCATC+GGG | - | chr5_2:12399579-12399598 | None:intergenic | 30.0% | |
| !! | GATGATGGATATTACTTGTA+AGG | + | chr5_2:12399579-12399598 | Msa0757520:intron | 30.0% |
| AAGTTAGGCTAAAGATAAAG+TGG | - | chr5_2:12399611-12399630 | None:intergenic | 30.0% | |
| CATGATATAAAGACAGCATA+GGG | - | chr5_2:12399667-12399686 | None:intergenic | 30.0% | |
| ACATGATATAAAGACAGCAT+AGG | - | chr5_2:12399668-12399687 | None:intergenic | 30.0% | |
| !!! | CTGTTTTTTCGTCATTTTGA+GGG | - | chr5_2:12399763-12399782 | None:intergenic | 30.0% |
| !!! | TCTGTTTTTTCGTCATTTTG+AGG | - | chr5_2:12399764-12399783 | None:intergenic | 30.0% |
| TGTAACAAAAAACAGCATAG+AGG | - | chr5_2:12399802-12399821 | None:intergenic | 30.0% | |
| !!! | TATGCTGTTTTTTGTTACAG+AGG | + | chr5_2:12399803-12399822 | Msa0757520:intron | 30.0% |
| TTAACTACAATTCATGCTTC+TGG | + | chr5_2:12399925-12399944 | Msa0757520:intron | 30.0% | |
| TAACTACAATTCATGCTTCT+GGG | + | chr5_2:12399926-12399945 | Msa0757520:intron | 30.0% | |
| GTATCATTATGTGTATATGC+AGG | + | chr5_2:12399995-12400014 | Msa0757520:intron | 30.0% | |
| TTTCCTTCCAAGTCAATATT+TGG | - | chr5_2:12400029-12400048 | None:intergenic | 30.0% | |
| ACAGTGTTTATATTAAGGAC+AGG | - | chr5_2:12400086-12400105 | None:intergenic | 30.0% | |
| !!! | GCTCTGTTTTTTAACATATC+AGG | + | chr5_2:12400139-12400158 | Msa0757520:intron | 30.0% |
| !! | TCAGGGTTTTGATATTTGAA+CGG | + | chr5_2:12400157-12400176 | Msa0757520:intron | 30.0% |
| AGATGTTTGAATCTAATGTG+AGG | + | chr5_2:12400287-12400306 | Msa0757520:CDS | 30.0% | |
| AGAAAATGGGTCAGATATTC+CGG | + | chr5_2:12397030-12397049 | Msa0757520:intron | 35.0% | |
| TCACCGTAAACGAAAGTTTA+AGG | + | chr5_2:12397203-12397222 | Msa0757520:intron | 35.0% | |
| !! | GGGTATTTTGAGAATTTTGG+AGG | - | chr5_2:12397614-12397633 | None:intergenic | 35.0% |
| !! | TGCATTTGTTCTGAAAAACC+TGG | - | chr5_2:12397706-12397725 | None:intergenic | 35.0% |
| TGTGCAAAGAGAAGAGAAAA+GGG | - | chr5_2:12398048-12398067 | None:intergenic | 35.0% | |
| TTGTGCAAAGAGAAGAGAAA+AGG | - | chr5_2:12398049-12398068 | None:intergenic | 35.0% | |
| GAGTAGTAGTCTTCCAATTT+AGG | - | chr5_2:12398120-12398139 | None:intergenic | 35.0% | |
| ATATCCACGTGAATTGAGTT+TGG | + | chr5_2:12398144-12398163 | Msa0757520:intron | 35.0% | |
| TAAACCAAACTCAATTCACG+TGG | - | chr5_2:12398151-12398170 | None:intergenic | 35.0% | |
| GAAAATAGTGGTGTATGAGT+GGG | - | chr5_2:12398266-12398285 | None:intergenic | 35.0% | |
| AGAAAATAGTGGTGTATGAG+TGG | - | chr5_2:12398267-12398286 | None:intergenic | 35.0% | |
| ! | ATGTTATTAGAGGATGATGG+TGG | - | chr5_2:12398687-12398706 | None:intergenic | 35.0% |
| GCAATGTTATTAGAGGATGA+TGG | - | chr5_2:12398690-12398709 | None:intergenic | 35.0% | |
| AATGGAAAACCTTGAGATTG+TGG | + | chr5_2:12398801-12398820 | Msa0757520:intron | 35.0% | |
| TTCTTACTACCACAATCTCA+AGG | - | chr5_2:12398813-12398832 | None:intergenic | 35.0% | |
| TGTGGTAGTAAGAATGATCT+AGG | + | chr5_2:12398819-12398838 | Msa0757520:intron | 35.0% | |
| ATCTAGGAGTTGAATTAGCA+AGG | + | chr5_2:12398835-12398854 | Msa0757520:intron | 35.0% | |
| ! | GAGCCTACAGTAAATTTTCA+CGG | - | chr5_2:12398873-12398892 | None:intergenic | 35.0% |
| !! | ATAAGAGCATTCACACTTCA+CGG | - | chr5_2:12399044-12399063 | None:intergenic | 35.0% |
| CTTGTTAAGTGATAACCTTG+GGG | + | chr5_2:12399080-12399099 | Msa0757520:intron | 35.0% | |
| TTGTTAAGTGATAACCTTGG+GGG | + | chr5_2:12399081-12399100 | Msa0757520:intron | 35.0% | |
| ! | TGTTCTTTTTCTTTCTTGGG+CGG | + | chr5_2:12399121-12399140 | Msa0757520:intron | 35.0% |
| TCAAAACTTCGAAGTTCATC+AGG | - | chr5_2:12399551-12399570 | None:intergenic | 35.0% | |
| AACAAAAAACAGCATAGAGG+TGG | - | chr5_2:12399799-12399818 | None:intergenic | 35.0% | |
| ! | CTACCATCCAAATATTGACT+TGG | + | chr5_2:12400019-12400038 | Msa0757520:CDS | 35.0% |
| CTTCCAAGTCAATATTTGGA+TGG | - | chr5_2:12400025-12400044 | None:intergenic | 35.0% | |
| !! | CATCCAAATATTGACTTGGA+AGG | + | chr5_2:12400023-12400042 | Msa0757520:CDS | 35.0% |
| TCAACATCTTAAGAGAAGAC+TGG | + | chr5_2:12400057-12400076 | Msa0757520:CDS | 35.0% | |
| !! | CAGGGTTTTGATATTTGAAC+GGG | + | chr5_2:12400158-12400177 | Msa0757520:intron | 35.0% |
| !! | AGGGTTTTGATATTTGAACG+GGG | + | chr5_2:12400159-12400178 | Msa0757520:intron | 35.0% |
| ACGGGGATACTTGAAATTTA+TGG | + | chr5_2:12400176-12400195 | Msa0757520:intron | 35.0% | |
| ! | ATCTGTTACTTATTGTGTGC+AGG | + | chr5_2:12400205-12400224 | Msa0757520:intron | 35.0% |
| TGTTTGAATCTAATGTGAGG+AGG | + | chr5_2:12400290-12400309 | Msa0757520:CDS | 35.0% | |
| GTTTGAATCTAATGTGAGGA+GGG | + | chr5_2:12400291-12400310 | Msa0757520:CDS | 35.0% | |
| ! | CAAACTGGCTCAGATAAAAC+GGG | - | chr5_2:12396843-12396862 | None:intergenic | 40.0% |
| ! | CCAAACTGGCTCAGATAAAA+CGG | - | chr5_2:12396844-12396863 | None:intergenic | 40.0% |
| GAAAATGGGTCAGATATTCC+GGG | + | chr5_2:12397031-12397050 | Msa0757520:intron | 40.0% | |
| ATTGTGGTACAAGAAGATGG+AGG | + | chr5_2:12397880-12397899 | Msa0757520:intron | 40.0% | |
| TTGTGGTACAAGAAGATGGA+GGG | + | chr5_2:12397881-12397900 | Msa0757520:intron | 40.0% | |
| TGAGCAAACCCAAATTCAGA+CGG | + | chr5_2:12397986-12398005 | Msa0757520:intron | 40.0% | |
| GAGAAGAGAAAAGGGATCTA+AGG | - | chr5_2:12398040-12398059 | None:intergenic | 40.0% | |
| !! | AGAAGCATGGAGGTTTTCAT+AGG | - | chr5_2:12398603-12398622 | None:intergenic | 40.0% |
| ! | AGCTTATAGTAGAAGCATGG+AGG | - | chr5_2:12398613-12398632 | None:intergenic | 40.0% |
| TGCAGCTTATAGTAGAAGCA+TGG | - | chr5_2:12398616-12398635 | None:intergenic | 40.0% | |
| TGTCATCTGCCATACTCTTA+TGG | + | chr5_2:12398637-12398656 | Msa0757520:intron | 40.0% | |
| AGTGTGAATGCTCTTATGCT+TGG | + | chr5_2:12399047-12399066 | Msa0757520:intron | 40.0% | |
| TGAAGAGTTACAAGCTCACT+AGG | + | chr5_2:12399321-12399340 | Msa0757520:intron | 40.0% | |
| AATTGCATGGTGCAAGACTT+TGG | - | chr5_2:12399510-12399529 | None:intergenic | 40.0% | |
| TTTGCCATTGGGAAATTGCA+TGG | - | chr5_2:12399523-12399542 | None:intergenic | 40.0% | |
| ATCAGGTCATCTTTGCCATT+GGG | - | chr5_2:12399534-12399553 | None:intergenic | 40.0% | |
| !!! | GCTGTTTTTTGTTACAGAGG+AGG | + | chr5_2:12399806-12399825 | Msa0757520:intron | 40.0% |
| ATAGATGGGAGACACATTGA+AGG | - | chr5_2:12399846-12399865 | None:intergenic | 40.0% | |
| TTTGTCTTGCACTTCACCTT+GGG | - | chr5_2:12399881-12399900 | None:intergenic | 40.0% | |
| ! | TGGCTTGTATCATCTCTTCA+CGG | + | chr5_2:12400112-12400131 | Msa0757520:CDS | 40.0% |
| TGTATCATCTCTTCACGGTA+TGG | + | chr5_2:12400117-12400136 | Msa0757520:intron | 40.0% | |
| ATTATCTCTCAAGACAGCAG+CGG | - | chr5_2:12400263-12400282 | None:intergenic | 40.0% | |
| CTCAGATAAAACGGGATGGA+GGG | - | chr5_2:12396835-12396854 | None:intergenic | 45.0% | |
| ! | CCGTTTTATCTGAGCCAGTT+TGG | + | chr5_2:12396841-12396860 | Msa0757520:intron | 45.0% |
| AAACTATATTCCCTCCGTCC+CGG | - | chr5_2:12397052-12397071 | None:intergenic | 45.0% | |
| TGTGCGTAGTACACTGTACA+CGG | - | chr5_2:12397076-12397095 | None:intergenic | 45.0% | |
| CAAACCCAAATTCAGACGGA+GGG | + | chr5_2:12397990-12398009 | Msa0757520:intron | 45.0% | |
| ! | GAGGGTGCAAATTTGCAAAG+CGG | + | chr5_2:12398008-12398027 | Msa0757520:intron | 45.0% |
| ATAGTGGTGTATGAGTGGGT+GGG | - | chr5_2:12398262-12398281 | None:intergenic | 45.0% | |
| AATAGTGGTGTATGAGTGGG+TGG | - | chr5_2:12398263-12398282 | None:intergenic | 45.0% | |
| CATCTGCCATACTCTTATGG+TGG | + | chr5_2:12398640-12398659 | Msa0757520:intron | 45.0% | |
| !! | TAGAGGATGATGGTGGTACA+TGG | - | chr5_2:12398680-12398699 | None:intergenic | 45.0% |
| GTGAGCTTGTAACTCTTCAC+AGG | - | chr5_2:12399320-12399339 | None:intergenic | 45.0% | |
| TGCACCATGCAATTTCCCAA+TGG | + | chr5_2:12399516-12399535 | Msa0757520:CDS | 45.0% | |
| CATCAGGTCATCTTTGCCAT+TGG | - | chr5_2:12399535-12399554 | None:intergenic | 45.0% | |
| !!! | GTTTTGATTCGACCCGATGA+TGG | + | chr5_2:12399564-12399583 | Msa0757520:CDS | 45.0% |
| AAGACAGCATAGGGACATCA+AGG | - | chr5_2:12399658-12399677 | None:intergenic | 45.0% | |
| !! | TCATTTTGAGGGTGACGTGT+AGG | - | chr5_2:12399752-12399771 | None:intergenic | 45.0% |
| GGTGCTTCATGTGGATAGAT+GGG | - | chr5_2:12399860-12399879 | None:intergenic | 45.0% | |
| CTTTGTCTTGCACTTCACCT+TGG | - | chr5_2:12399882-12399901 | None:intergenic | 45.0% | |
| CAAGGTGAAGTGCAAGACAA+AGG | + | chr5_2:12399880-12399899 | Msa0757520:CDS | 45.0% | |
| GTGAAGTGCAAGACAAAGGT+AGG | + | chr5_2:12399884-12399903 | Msa0757520:intron | 45.0% | |
| ATTCAGGGGATCCTCGTAAT+TGG | - | chr5_2:12400233-12400252 | None:intergenic | 45.0% | |
| GCTCAGATAAAACGGGATGG+AGG | - | chr5_2:12396836-12396855 | None:intergenic | 50.0% | |
| CTGGCTCAGATAAAACGGGA+TGG | - | chr5_2:12396839-12396858 | None:intergenic | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | + | chr5_2:12397035-12397054 | Msa0757520:intron | 50.0% | |
| TGTGTAAGAAGTGAGGAGGG+TGG | - | chr5_2:12397590-12397609 | None:intergenic | 50.0% | |
| GGGTGTGTAAGAAGTGAGGA+GGG | - | chr5_2:12397593-12397612 | None:intergenic | 50.0% | |
| AGGGTGTGTAAGAAGTGAGG+AGG | - | chr5_2:12397594-12397613 | None:intergenic | 50.0% | |
| ! | TGGAGGGTGTGTAAGAAGTG+AGG | - | chr5_2:12397597-12397616 | None:intergenic | 50.0% |
| GGTACAAGAAGATGGAGGGA+AGG | + | chr5_2:12397885-12397904 | Msa0757520:intron | 50.0% | |
| ACAAGAAGATGGAGGGAAGG+AGG | + | chr5_2:12397888-12397907 | Msa0757520:intron | 50.0% | |
| CAAGAAGATGGAGGGAAGGA+GGG | + | chr5_2:12397889-12397908 | Msa0757520:intron | 50.0% | |
| GCAAACCCAAATTCAGACGG+AGG | + | chr5_2:12397989-12398008 | Msa0757520:intron | 50.0% | |
| TGCACCCTCCGTCTGAATTT+GGG | - | chr5_2:12397997-12398016 | None:intergenic | 50.0% | |
| TTGCACCCTCCGTCTGAATT+TGG | - | chr5_2:12397998-12398017 | None:intergenic | 50.0% | |
| GGGTGCTTCATGTGGATAGA+TGG | - | chr5_2:12399861-12399880 | None:intergenic | 50.0% | |
| ! | CTATCCACATGAAGCACCCA+AGG | + | chr5_2:12399862-12399881 | Msa0757520:CDS | 50.0% |
| TTCACCTTGGGTGCTTCATG+TGG | - | chr5_2:12399869-12399888 | None:intergenic | 50.0% | |
| AGCAGCGGCATCATGATTCA+GGG | - | chr5_2:12400248-12400267 | None:intergenic | 50.0% | |
| AATGTGAGGAGGGCAATGTC+TGG | + | chr5_2:12400301-12400320 | Msa0757520:CDS | 50.0% | |
| GTCAGATATTCCGGGACGGA+GGG | + | chr5_2:12397039-12397058 | Msa0757520:intron | 55.0% | |
| AGATGGAGGGAAGGAGGGAA+AGG | + | chr5_2:12397894-12397913 | Msa0757520:intron | 55.0% | |
| ACATCCTCGCGAGGGAGAAA+TGG | + | chr5_2:12397933-12397952 | Msa0757520:intron | 55.0% | |
| CATCCTCGCGAGGGAGAAAT+GGG | + | chr5_2:12397934-12397953 | Msa0757520:intron | 55.0% | |
| ATTCCCATTTCTCCCTCGCG+AGG | - | chr5_2:12397940-12397959 | None:intergenic | 55.0% | |
| TGGTGTATGAGTGGGTGGGT+GGG | - | chr5_2:12398258-12398277 | None:intergenic | 55.0% | |
| CTGTAGGCTCTCCTGCTTTG+AGG | + | chr5_2:12398883-12398902 | Msa0757520:intron | 55.0% | |
| !! | TAGGCTCTCCTGCTTTGAGG+AGG | + | chr5_2:12398886-12398905 | Msa0757520:intron | 55.0% |
| !! | TCTCCTGCTTTGAGGAGGAC+AGG | + | chr5_2:12398891-12398910 | Msa0757520:intron | 55.0% |
| !! | CTCCTGCTTTGAGGAGGACA+GGG | + | chr5_2:12398892-12398911 | Msa0757520:intron | 55.0% |
| ACATGGGTTTCTCACCCCCA+AGG | - | chr5_2:12399098-12399117 | None:intergenic | 55.0% | |
| GTGTGCAGGAGCCAATTACG+AGG | + | chr5_2:12400219-12400238 | Msa0757520:intron | 55.0% | |
| GCAGCGGCATCATGATTCAG+GGG | - | chr5_2:12400247-12400266 | None:intergenic | 55.0% | |
| CAGCAGCGGCATCATGATTC+AGG | - | chr5_2:12400249-12400268 | None:intergenic | 55.0% | |
| TGAGGAGGGCAATGTCTGGT+GGG | + | chr5_2:12400305-12400324 | Msa0757520:CDS | 55.0% | |
| ! | GGCAATGTCTGGTGGGTATG+TGG | + | chr5_2:12400312-12400331 | Msa0757520:CDS | 55.0% |
| GGTCAGATATTCCGGGACGG+AGG | + | chr5_2:12397038-12397057 | Msa0757520:intron | 60.0% | |
| TGTATGAGTGGGTGGGTGGG+GGG | - | chr5_2:12398255-12398274 | None:intergenic | 60.0% | |
| GTGTATGAGTGGGTGGGTGG+GGG | - | chr5_2:12398256-12398275 | None:intergenic | 60.0% | |
| GGTGTATGAGTGGGTGGGTG+GGG | - | chr5_2:12398257-12398276 | None:intergenic | 60.0% | |
| GTGGTGTATGAGTGGGTGGG+TGG | - | chr5_2:12398259-12398278 | None:intergenic | 60.0% | |
| GTCCCTGTCCTCCTCAAAGC+AGG | - | chr5_2:12398897-12398916 | None:intergenic | 60.0% | |
| GTGAGGAGGGCAATGTCTGG+TGG | + | chr5_2:12400304-12400323 | Msa0757520:CDS | 60.0% | |
| CCTCGCGAGGATGTGCGAGA+GGG | - | chr5_2:12397927-12397946 | None:intergenic | 65.0% | |
| CCTCTCGCACATCCTCGCGA+GGG | + | chr5_2:12397925-12397944 | Msa0757520:intron | 65.0% | |
| TATGAGTGGGTGGGTGGGGG+GGG | - | chr5_2:12398253-12398272 | None:intergenic | 65.0% | |
| GTATGAGTGGGTGGGTGGGG+GGG | - | chr5_2:12398254-12398273 | None:intergenic | 65.0% | |
| CCCTCTCGCACATCCTCGCG+AGG | + | chr5_2:12397924-12397943 | Msa0757520:intron | 70.0% | |
| CCCTCGCGAGGATGTGCGAG+AGG | - | chr5_2:12397928-12397947 | None:intergenic | 70.0% | |
| ATGAGTGGGTGGGTGGGGGG+GGG | - | chr5_2:12398252-12398271 | None:intergenic | 70.0% | |
| TGAGTGGGTGGGTGGGGGGG+GGG | - | chr5_2:12398251-12398270 | None:intergenic | 75.0% | |
| ! | AGTGGGTGGGTGGGGGGGGG+GGG | - | chr5_2:12398249-12398268 | None:intergenic | 80.0% |
| ! | GAGTGGGTGGGTGGGGGGGG+GGG | - | chr5_2:12398250-12398269 | None:intergenic | 80.0% |
| ! | TGGGTGGGTGGGGGGGGGGG+GGG | - | chr5_2:12398247-12398266 | None:intergenic | 85.0% |
| ! | GTGGGTGGGTGGGGGGGGGG+GGG | - | chr5_2:12398248-12398267 | None:intergenic | 85.0% |
| ! | GTGGGTGGGGGGGGGGGGGG+GGG | - | chr5_2:12398244-12398263 | None:intergenic | 90.0% |
| ! | GGTGGGTGGGGGGGGGGGGG+GGG | - | chr5_2:12398245-12398264 | None:intergenic | 90.0% |
| ! | GGGTGGGTGGGGGGGGGGGG+GGG | - | chr5_2:12398246-12398265 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 12396702 | 12400351 | 12396702 | ID=Msa0757520;Name=Msa0757520 |
| chr5_2 | mRNA | 12396702 | 12400351 | 12396702 | ID=Msa0757520-mRNA-1;Parent=Msa0757520;Name=Msa0757520-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|0.8|0.5|0.4|5|0|141 |
| chr5_2 | exon | 12396702 | 12396708 | 12396702 | ID=Msa0757520-mRNA-1:exon:5557;Parent=Msa0757520-mRNA-1 |
| chr5_2 | exon | 12399487 | 12399595 | 12399487 | ID=Msa0757520-mRNA-1:exon:5558;Parent=Msa0757520-mRNA-1 |
| chr5_2 | exon | 12399823 | 12399901 | 12399823 | ID=Msa0757520-mRNA-1:exon:5559;Parent=Msa0757520-mRNA-1 |
| chr5_2 | exon | 12400017 | 12400133 | 12400017 | ID=Msa0757520-mRNA-1:exon:5560;Parent=Msa0757520-mRNA-1 |
| chr5_2 | exon | 12400241 | 12400351 | 12400241 | ID=Msa0757520-mRNA-1:exon:5561;Parent=Msa0757520-mRNA-1 |
| chr5_2 | CDS | 12396702 | 12396708 | 12396702 | ID=Msa0757520-mRNA-1:cds;Parent=Msa0757520-mRNA-1 |
| chr5_2 | CDS | 12399487 | 12399595 | 12399487 | ID=Msa0757520-mRNA-1:cds;Parent=Msa0757520-mRNA-1 |
| chr5_2 | CDS | 12399823 | 12399901 | 12399823 | ID=Msa0757520-mRNA-1:cds;Parent=Msa0757520-mRNA-1 |
| chr5_2 | CDS | 12400017 | 12400133 | 12400017 | ID=Msa0757520-mRNA-1:cds;Parent=Msa0757520-mRNA-1 |
| chr5_2 | CDS | 12400241 | 12400351 | 12400241 | ID=Msa0757520-mRNA-1:cds;Parent=Msa0757520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
