AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0294560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0294560 MtrunA17_Chr2g0316201 82.703 185 0 1 1 185 1 153 4.12e-105 298
Msa0294560 MtrunA17_Chr2g0316211 80.541 185 4 1 1 185 1 153 4.61e-102 290
Msa0294560 MtrunA17_Chr5g0432831 40.678 177 73 1 8 184 4 148 2.05e-41 136
Msa0294560 MtrunA17_Chr3g0108261 40.113 177 74 1 8 184 4 148 8.90e-41 135
Msa0294560 MtrunA17_Chr7g0275361 40.113 177 74 1 8 184 4 148 1.42e-40 134
Msa0294560 MtrunA17_Chr8g0369311 40.678 177 73 1 8 184 60 204 1.96e-40 135
Msa0294560 MtrunA17_Chr1g0154011 39.429 175 74 1 8 182 4 146 6.88e-40 132
Msa0294560 MtrunA17_Chr4g0037011 38.983 177 76 1 8 184 4 148 2.40e-39 131
Msa0294560 MtrunA17_Chr3g0131871 40.000 160 63 2 24 182 22 149 2.01e-33 117
Msa0294560 MtrunA17_Chr8g0362321 32.544 169 82 1 8 176 7 143 3.61e-31 110
Msa0294560 MtrunA17_Chr4g0060351 32.544 169 82 1 8 176 7 143 3.69e-31 110
Msa0294560 MtrunA17_Chr4g0038891 37.500 160 68 1 8 167 35 162 3.56e-30 108
Msa0294560 MtrunA17_Chr5g0396451 36.875 160 69 1 8 167 35 162 2.50e-29 106
Msa0294560 MtrunA17_Chr8g0378601 32.571 175 86 1 8 182 25 167 5.85e-28 102
Msa0294560 MtrunA17_Chr3g0139901 33.146 178 83 4 9 182 7 152 1.52e-26 99.0
Msa0294560 MtrunA17_Chr1g0199951 34.545 165 75 2 4 167 40 172 6.35e-25 95.9
Msa0294560 MtrunA17_Chr7g0254701 30.811 185 92 2 2 182 3 155 3.45e-21 87.8
Msa0294560 MtrunA17_Chr8g0348701 30.719 153 72 3 32 182 27 147 1.50e-19 81.6
Msa0294560 MtrunA17_Chr5g0403591 42.353 85 49 0 82 166 73 157 3.29e-18 78.2
Msa0294560 MtrunA17_Chr8g0387131 30.065 153 73 3 32 182 27 147 5.76e-18 77.4
Msa0294560 MtrunA17_Chr4g0059291 30.719 153 72 3 32 182 27 147 6.95e-18 77.0
Msa0294560 MtrunA17_Chr4g0031181 26.994 163 73 3 21 169 20 150 1.57e-16 73.2
Msa0294560 MtrunA17_Chr2g0328001 27.044 159 70 3 20 164 19 145 3.52e-15 69.7
Msa0294560 MtrunA17_Chr4g0053191 42.466 73 40 1 84 154 56 128 5.31e-15 68.9
Msa0294560 MtrunA17_Chr5g0401831 32.353 102 67 1 84 183 56 157 1.63e-14 67.8
Msa0294560 MtrunA17_Chr8g0372391 48.214 56 28 1 85 139 62 117 1.89e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0294560 AT1G16890.2 82.162 185 1 1 1 185 1 153 2.05e-104 296
Msa0294560 AT1G78870.2 82.162 185 1 1 1 185 1 153 2.64e-104 296
Msa0294560 AT1G16890.3 77.835 194 2 2 1 185 1 162 1.50e-100 287
Msa0294560 AT1G78870.1 78.947 152 1 1 34 185 1 121 1.47e-80 235
Msa0294560 AT1G16890.1 78.947 152 0 1 34 185 1 120 4.75e-80 234
Msa0294560 AT1G78870.4 78.289 152 1 1 34 185 1 120 1.57e-79 232
Msa0294560 AT1G78870.3 77.143 140 0 1 1 140 1 108 9.98e-70 207
Msa0294560 AT3G08690.2 40.678 177 73 1 8 184 4 148 1.70e-41 137
Msa0294560 AT3G08690.1 40.678 177 73 1 8 184 4 148 1.70e-41 137
Msa0294560 AT5G41700.5 40.678 177 73 1 8 184 4 148 2.09e-41 137
Msa0294560 AT5G41700.2 40.678 177 73 1 8 184 4 148 2.09e-41 137
Msa0294560 AT5G41700.1 40.678 177 73 1 8 184 4 148 2.09e-41 137
Msa0294560 AT1G64230.2 40.113 177 74 1 8 184 4 148 2.28e-41 137
Msa0294560 AT1G64230.1 40.113 177 74 1 8 184 4 148 2.28e-41 137
Msa0294560 AT5G53300.2 40.113 177 74 1 8 184 4 148 5.09e-41 135
Msa0294560 AT5G53300.4 40.113 177 74 1 8 184 4 148 5.09e-41 135
Msa0294560 AT5G53300.1 40.113 177 74 1 8 184 4 148 5.09e-41 135
Msa0294560 AT4G27960.1 40.113 177 74 1 8 184 4 148 7.78e-41 135
Msa0294560 AT4G27960.2 40.113 177 74 1 8 184 34 178 1.69e-40 135
Msa0294560 AT2G16740.1 40.571 175 72 1 8 182 4 146 1.94e-40 134
Msa0294560 AT5G56150.1 40.113 177 74 1 8 184 4 148 1.76e-39 132
Msa0294560 AT5G41700.4 40.449 178 73 2 8 184 4 149 2.44e-39 131
Msa0294560 AT1G64230.3 38.172 186 74 2 8 184 4 157 2.59e-38 129
Msa0294560 AT1G64230.5 40.127 157 62 1 28 184 66 190 1.54e-35 123
Msa0294560 AT1G64230.4 40.127 157 62 1 28 184 66 190 1.54e-35 123
Msa0294560 AT3G08700.2 37.640 178 78 2 8 184 4 149 1.63e-35 122
Msa0294560 AT3G08700.1 37.640 178 78 2 8 184 4 149 1.63e-35 122
Msa0294560 AT5G50870.1 38.068 176 75 3 9 182 6 149 4.15e-34 119
Msa0294560 AT5G62540.1 34.568 162 74 1 8 169 7 136 6.95e-31 110
Msa0294560 AT5G50870.2 35.829 187 75 4 9 182 6 160 1.06e-30 111
Msa0294560 AT2G02760.1 31.953 169 83 1 8 176 7 143 2.47e-30 108
Msa0294560 AT2G02760.2 31.953 169 83 1 8 176 7 143 2.47e-30 108
Msa0294560 AT2G02760.4 31.953 169 83 1 8 176 7 143 2.47e-30 108
Msa0294560 AT2G02760.3 31.953 169 83 1 8 176 7 143 2.47e-30 108
Msa0294560 AT1G14400.1 32.716 162 77 1 8 169 7 136 2.96e-30 108
Msa0294560 AT1G14400.2 32.716 162 77 1 8 169 7 136 2.96e-30 108
Msa0294560 AT3G20060.1 35.625 160 71 1 8 167 39 166 3.37e-29 107
Msa0294560 AT3G13550.1 33.143 175 85 1 8 182 39 181 1.57e-28 105
Msa0294560 AT3G20060.2 37.241 145 59 1 23 167 9 121 2.51e-28 103
Msa0294560 AT5G25760.1 34.270 178 81 4 9 182 7 152 1.02e-26 99.8
Msa0294560 AT5G25760.2 34.270 178 81 4 9 182 7 152 1.02e-26 99.8
Msa0294560 AT1G36340.2 35.227 176 81 2 8 183 11 153 2.41e-25 96.3
Msa0294560 AT1G36340.1 35.227 176 81 2 8 183 11 153 2.41e-25 96.3
Msa0294560 AT1G50490.1 35.625 160 71 1 8 167 38 165 4.05e-25 96.3
Msa0294560 AT3G24515.1 49.515 103 48 1 84 182 62 164 4.44e-25 100
Msa0294560 AT3G24515.3 49.515 103 48 1 84 182 87 189 4.79e-25 100
Msa0294560 AT5G41700.3 36.765 136 54 1 8 143 4 107 9.02e-25 94.4
Msa0294560 AT5G53300.3 36.641 131 51 1 8 138 4 102 4.00e-24 91.7
Msa0294560 AT5G56150.2 36.364 132 52 1 8 139 4 103 3.89e-23 89.4
Msa0294560 AT3G13550.2 33.333 144 64 1 8 151 39 150 3.90e-23 90.9
Msa0294560 AT5G05080.2 28.649 185 96 2 2 182 3 155 2.43e-20 85.5
Msa0294560 AT5G05080.3 28.649 185 96 2 2 182 3 155 2.43e-20 85.5
Msa0294560 AT5G05080.1 28.649 185 96 2 2 182 3 155 2.43e-20 85.5
Msa0294560 AT5G05080.4 28.649 185 96 2 2 182 3 155 2.43e-20 85.5
Msa0294560 AT5G41340.2 37.838 111 66 3 75 182 2 112 9.82e-20 81.6
Msa0294560 AT1G63800.2 32.026 153 70 3 32 182 12 132 1.59e-18 79.0
Msa0294560 AT1G63800.1 32.026 153 70 3 32 182 27 147 1.76e-18 79.3
Msa0294560 AT5G41340.1 39.604 101 59 2 84 182 47 147 2.06e-18 79.0
Msa0294560 AT4G36800.2 42.169 83 48 0 84 166 76 158 4.40e-18 78.2
Msa0294560 AT4G36800.1 42.169 83 48 0 84 166 76 158 4.40e-18 78.2
Msa0294560 AT2G18600.1 42.353 85 49 0 82 166 75 159 4.84e-18 78.2
Msa0294560 AT2G18600.2 42.353 85 49 0 82 166 75 159 4.84e-18 78.2
Msa0294560 AT2G46030.4 32.026 153 70 3 32 182 30 150 6.03e-18 77.8
Msa0294560 AT2G46030.2 32.026 153 70 3 32 182 30 150 6.03e-18 77.8
Msa0294560 AT2G46030.5 32.026 153 70 3 32 182 27 147 6.04e-18 77.8
Msa0294560 AT2G46030.1 32.026 153 70 3 32 182 27 147 6.04e-18 77.8
Msa0294560 AT3G55380.1 27.322 183 87 3 1 169 1 151 6.75e-18 77.0
Msa0294560 AT2G46030.3 32.026 153 70 3 32 182 99 219 1.67e-17 77.8
Msa0294560 AT2G32790.1 34.177 158 68 3 29 184 54 177 1.28e-16 73.9
Msa0294560 AT5G59300.1 26.506 166 76 3 18 169 17 150 6.41e-16 72.0
Msa0294560 AT3G46460.1 27.108 166 75 3 18 169 17 150 9.75e-16 71.6
Msa0294560 AT3G46460.3 32.323 99 54 1 84 169 10 108 1.83e-15 69.7
Msa0294560 AT3G46460.2 32.323 99 54 1 84 169 10 108 1.83e-15 69.7
Msa0294560 AT3G57870.1 38.961 77 45 1 84 158 57 133 1.15e-14 68.6
Msa0294560 AT1G45050.1 46.429 56 29 1 85 139 62 117 4.18e-11 58.9

Find 87 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGGGATATTGATTATTT+TGG 0.083514 2_3:+46502748 Msa0294560:CDS
TCAACTGCTAAATGTAATTT+TGG 0.131706 2_3:+46506649 Msa0294560:three_prime_UTR
GATTCACACTACCCGTTTAA+AGG 0.192906 2_3:-46506757 None:intergenic
GACAATTTGGTGGATACTTT+TGG 0.228908 2_3:+46506417 Msa0294560:exon
GCCAGTGGTGCTTGACAATT+TGG 0.241187 2_3:+46506404 Msa0294560:exon
AGGTTACTGTTAGCCATTAT+TGG 0.261010 2_3:-46501484 None:intergenic
GTGTTTATCTTTGATAGAAA+TGG 0.277483 2_3:+46502731 Msa0294560:CDS
TGTCCACATTATCATGGATT+TGG 0.286310 2_3:+46506713 Msa0294560:three_prime_UTR
AGGTGTAAAACCAAGTTGTT+AGG 0.291649 2_3:-46502695 None:intergenic
TTGGAACTTGTATGAATATA+TGG 0.304645 2_3:+46506590 Msa0294560:three_prime_UTR
ATCTTCCGGAAGCCTTCTAT+TGG 0.305818 2_3:+46506571 Msa0294560:three_prime_UTR
TTCATACAAGTTCCAATAGA+AGG 0.333207 2_3:-46506583 None:intergenic
ATATAATCTGGTCCACTCTT+TGG 0.343468 2_3:-46506381 None:intergenic
CGGAAGCTATAAGAGGAAAA+TGG 0.343675 2_3:-46506527 None:intergenic
TGTTTATCTTTGATAGAAAT+GGG 0.357887 2_3:+46502732 Msa0294560:CDS
TTCTCAGAAAGAGGATCATC+TGG 0.366062 2_3:-46506194 None:intergenic
GGTTACTGTTAGCCATTATT+GGG 0.381254 2_3:-46501483 None:intergenic
GCAGCCATTGGATATTCTTC+AGG 0.381683 2_3:-46503944 None:intergenic
TCGATTGCAAAGTACGCAAT+AGG 0.382963 2_3:-46501460 None:intergenic
CTTTGCAATCGACCCAATAA+TGG 0.389615 2_3:+46501471 Msa0294560:exon
ATTCACACTACCCGTTTAAA+GGG 0.395075 2_3:-46506756 None:intergenic
GTTTATTGCTTTCTATCTTC+CGG 0.395362 2_3:+46506557 Msa0294560:three_prime_UTR
AGTGAAGAGTACCCTTTAAA+CGG 0.409243 2_3:+46506745 Msa0294560:three_prime_UTR
CGATTGCAAAGTACGCAATA+GGG 0.413313 2_3:-46501459 None:intergenic
TTGGTTTGTCCACATTATCA+TGG 0.417818 2_3:+46506707 Msa0294560:three_prime_UTR
GAAGGGGATGCACTAATTCC+AGG 0.430653 2_3:-46502599 None:intergenic
AAGCATACCTTGTCAATGTT+AGG 0.438243 2_3:-46505496 None:intergenic
GAAAGCAATAAACATGTAAC+CGG 0.440500 2_3:-46506547 None:intergenic
GAAATTCGATGCAGCTTGGC+AGG 0.441798 2_3:+46505576 Msa0294560:intron
CTGAGAACATTGCTAAGCAT+TGG 0.441903 2_3:+46506210 Msa0294560:CDS
GAAAGAGGATCATCTGGGTT+TGG 0.452444 2_3:-46506188 None:intergenic
TATTTCAATGTGATGATCCT+TGG 0.456529 2_3:+46502638 Msa0294560:CDS
TTACATTTAGCAGTTGAAGA+TGG 0.460693 2_3:-46506643 None:intergenic
ACCAAATTGTCAAGCACCAC+TGG 0.462138 2_3:-46506405 None:intergenic
AGCACCACTGGCATATAATC+TGG 0.467837 2_3:-46506393 None:intergenic
TTCAATAATATTCTCAGCCA+TGG 0.467955 2_3:+46506805 Msa0294560:three_prime_UTR
CTTCATAAGGAGACTGAGTT+GGG 0.469912 2_3:-46502661 None:intergenic
TGGAATTAGTGCATCCCCTT+CGG 0.472941 2_3:+46502601 Msa0294560:CDS
TAAACACAATACGCATTTCA+AGG 0.473067 2_3:-46502715 None:intergenic
GTGAAGAGTACCCTTTAAAC+GGG 0.477315 2_3:+46506746 Msa0294560:three_prime_UTR
CAGCGTTTGCTCAGTGAGCC+AGG 0.478486 2_3:+46501926 Msa0294560:CDS
GAGGCTGAGGCTGTTGAGAC+AGG 0.486241 2_3:+46506242 Msa0294560:CDS
TATTAACTATCAAATTGAAA+TGG 0.486332 2_3:+46506469 Msa0294560:three_prime_UTR
AGTACCTTTGGAGCAGCCAT+TGG 0.489227 2_3:-46503956 None:intergenic
TTGGTCTCAAATAACAATAG+TGG 0.494957 2_3:+46506436 Msa0294560:three_prime_UTR
AGTACGCAATAGGGGTTTGA+GGG 0.495981 2_3:-46501450 None:intergenic
TTGACTTCTCTGAGGAAAGT+GGG 0.499594 2_3:-46506884 None:intergenic
AAGTACGCAATAGGGGTTTG+AGG 0.506890 2_3:-46501451 None:intergenic
AAGTTCCAATAGAAGGCTTC+CGG 0.507573 2_3:-46506576 None:intergenic
TTGATATTCTGAAAGATAAG+TGG 0.507902 2_3:+46505606 Msa0294560:CDS
GGGTCATCACTACCTTCATA+AGG 0.510970 2_3:-46502674 None:intergenic
TTTGACTTCTCTGAGGAAAG+TGG 0.511255 2_3:-46506885 None:intergenic
CCTTGATGATTCTTCGAGGA+AGG 0.515767 2_3:-46501504 None:intergenic
ATGTAACCGGAAGCTATAAG+AGG 0.517239 2_3:-46506534 None:intergenic
GCGTAGTAGAATTTCACAAA+GGG 0.526186 2_3:-46501384 None:intergenic
ATATCCAATGGCTGCTCCAA+AGG 0.528645 2_3:+46503952 Msa0294560:CDS
TTAGCAATGTTCTCAGAAAG+AGG 0.528946 2_3:-46506203 None:intergenic
GGTGTAAAACCAAGTTGTTA+GGG 0.531620 2_3:-46502694 None:intergenic
AAAGTACAGTGCGAATCTGA+AGG 0.534958 2_3:-46505637 None:intergenic
CCTTCATAAGGAGACTGAGT+TGG 0.538189 2_3:-46502662 None:intergenic
CCAACTCAGTCTCCTTATGA+AGG 0.539979 2_3:+46502662 Msa0294560:CDS
GAGGAATTGTCTAAACTATG+TGG 0.544191 2_3:+46506501 Msa0294560:three_prime_UTR
CGAACCTTGATGATTCTTCG+AGG 0.552069 2_3:-46501508 None:intergenic
TTAAATCTGCAGCCAAAGAG+TGG 0.559027 2_3:+46506369 Msa0294560:intron
AAGGAGACTGAGTTGGGCCA+AGG 0.563036 2_3:-46502655 None:intergenic
TTGGAAATCTAACGAGGCTG+AGG 0.570066 2_3:+46506229 Msa0294560:CDS
TTTGCCTGAAGAATATCCAA+TGG 0.577448 2_3:+46503940 Msa0294560:CDS
ACAGTGCGAATCTGAAGGGC+GGG 0.582860 2_3:-46505632 None:intergenic
TAGTGATGACCCTAACAACT+TGG 0.587637 2_3:+46502685 Msa0294560:CDS
TATGTGTCAAATTTAAAACA+TGG 0.589636 2_3:+46506619 Msa0294560:three_prime_UTR
ACCGCATATTGTCTTCCGAA+GGG 0.591021 2_3:-46502616 None:intergenic
AGTGGTGCTTGACAATTTGG+TGG 0.594598 2_3:+46506407 Msa0294560:exon
CCTTCCTCGAAGAATCATCA+AGG 0.595281 2_3:+46501504 Msa0294560:CDS
CGCGTAGTAGAATTTCACAA+AGG 0.607767 2_3:-46501385 None:intergenic
GATTGCAAAGTACGCAATAG+GGG 0.610323 2_3:-46501458 None:intergenic
TCTCAGAAAGAGGATCATCT+GGG 0.624579 2_3:-46506193 None:intergenic
AAGTACAGTGCGAATCTGAA+GGG 0.628795 2_3:-46505636 None:intergenic
TACCGCATATTGTCTTCCGA+AGG 0.629625 2_3:-46502617 None:intergenic
AAGCCAAATCCATGATAATG+TGG 0.631625 2_3:-46506716 None:intergenic
CCCCTTCGGAAGACAATATG+CGG 0.635414 2_3:+46502615 Msa0294560:CDS
TGATAATGTGGACAAACCAA+AGG 0.635774 2_3:-46506704 None:intergenic
TACAGTGCGAATCTGAAGGG+CGG 0.640507 2_3:-46505633 None:intergenic
CCGCATATTGTCTTCCGAAG+GGG 0.658062 2_3:-46502615 None:intergenic
TGGACCAGATTATATGCCAG+TGG 0.669843 2_3:+46506389 Msa0294560:CDS
TAATGGATTTGACTTCTCTG+AGG 0.670608 2_3:-46506892 None:intergenic
ATATCATCCTAACATTGACA+AGG 0.690087 2_3:+46505489 Msa0294560:CDS
TAAGCATTGGAAATCTAACG+AGG 0.750907 2_3:+46506223 Msa0294560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTACATGTGAAATTA+GGG + chr2_3:46501686-46501705 Msa0294560:intron 15.0%
!!! TAGTTTTGAATTGTTTTTAT+TGG + chr2_3:46501862-46501881 Msa0294560:intron 15.0%
!! ATATGATATGATTACAATAA+AGG - chr2_3:46502204-46502223 None:intergenic 15.0%
!! TAATGTATTATAGATTTGTA+TGG + chr2_3:46503466-46503485 Msa0294560:intron 15.0%
!! AATAAGTCAATAAATAGTTA+AGG + chr2_3:46504226-46504245 Msa0294560:intron 15.0%
!! ATAAGTCAATAAATAGTTAA+GGG + chr2_3:46504227-46504246 Msa0294560:intron 15.0%
!!! AAAGATTTTCTTGATAAATT+GGG + chr2_3:46505097-46505116 Msa0294560:intron 15.0%
!!! TTATTTTTTTCTTTCTTTTC+TGG + chr2_3:46505333-46505352 Msa0294560:intron 15.0%
!! AAAATATGATATGATAGATT+TGG + chr2_3:46505375-46505394 Msa0294560:intron 15.0%
!! TATTTCAAAAAAGTTCAATT+TGG - chr2_3:46505827-46505846 None:intergenic 15.0%
!!! TTTTTAAACCATAAATTATC+TGG + chr2_3:46505947-46505966 Msa0294560:intron 15.0%
!!! TGATAATAATGTAAATTTTG+TGG + chr2_3:46506131-46506150 Msa0294560:intron 15.0%
!!! GATAATAATGTAAATTTTGT+GGG + chr2_3:46506132-46506151 Msa0294560:intron 15.0%
!! TATTAACTATCAAATTGAAA+TGG + chr2_3:46506469-46506488 Msa0294560:three_prime_UTR 15.0%
!! ATCTTAAGAAGAAAATTGAA+AGG - chr2_3:46501536-46501555 None:intergenic 20.0%
!! GTAAAATTACATGTGAAATT+AGG + chr2_3:46501685-46501704 Msa0294560:intron 20.0%
!!! TCATTTTCTCTAATTGTTAT+CGG - chr2_3:46502178-46502197 None:intergenic 20.0%
!! TGTTTATCTTTGATAGAAAT+GGG + chr2_3:46502732-46502751 Msa0294560:CDS 20.0%
!!! AAATGGGATATTGATTATTT+TGG + chr2_3:46502748-46502767 Msa0294560:CDS 20.0%
!!! AATGGGATATTGATTATTTT+GGG + chr2_3:46502749-46502768 Msa0294560:CDS 20.0%
!!! TATAAATTTTGACTTTCTGA+AGG + chr2_3:46503586-46503605 Msa0294560:intron 20.0%
!!! ATAAATTTTGACTTTCTGAA+GGG + chr2_3:46503587-46503606 Msa0294560:intron 20.0%
!! ACAATTAAATTAAGTACCTT+TGG - chr2_3:46503971-46503990 None:intergenic 20.0%
!! AAACTCTTAAAAAAGTTTAC+AGG - chr2_3:46504106-46504125 None:intergenic 20.0%
!! TGTAAATAACCTTAAAATGA+CGG + chr2_3:46504311-46504330 Msa0294560:intron 20.0%
!!! GAAAGATTTTCTTGATAAAT+TGG + chr2_3:46505096-46505115 Msa0294560:intron 20.0%
!! ATTGAAATGGAAAAATTTAG+AGG + chr2_3:46506482-46506501 Msa0294560:three_prime_UTR 20.0%
!!! TATGTGTCAAATTTAAAACA+TGG + chr2_3:46506619-46506638 Msa0294560:three_prime_UTR 20.0%
!! ATCATAACAGAAAAATCTAA+CGG + chr2_3:46506777-46506796 Msa0294560:three_prime_UTR 20.0%
!!! TTGATAATTGAAAAATTCCA+TGG - chr2_3:46506825-46506844 None:intergenic 20.0%
! CGATCATAGAAATTGAAAAA+GGG - chr2_3:46501559-46501578 None:intergenic 25.0%
! TCGATCATAGAAATTGAAAA+AGG - chr2_3:46501560-46501579 None:intergenic 25.0%
!! ACACAAGATTTAGAGTAATT+AGG - chr2_3:46501604-46501623 None:intergenic 25.0%
!!! GTAGATTGATTTTTTTTCAG+TGG + chr2_3:46501708-46501727 Msa0294560:intron 25.0%
! TCAGTGATGATTACAAAATT+AGG + chr2_3:46501757-46501776 Msa0294560:intron 25.0%
!! TAAAGTGTTAGATGTTGAAT+CGG + chr2_3:46501785-46501804 Msa0294560:intron 25.0%
!!! TGTGTGGTTTTTATTTTTTG+TGG + chr2_3:46502014-46502033 Msa0294560:intron 25.0%
! TGTAATCATATCATATGTGT+TGG + chr2_3:46502208-46502227 Msa0294560:intron 25.0%
! TACCATATAACACGAAAATA+GGG - chr2_3:46502391-46502410 None:intergenic 25.0%
! GAAAAAATGTTGTCAAATAG+TGG + chr2_3:46502416-46502435 Msa0294560:intron 25.0%
! GTGTTTATCTTTGATAGAAA+TGG + chr2_3:46502731-46502750 Msa0294560:CDS 25.0%
!!! ATGGGATATTGATTATTTTG+GGG + chr2_3:46502750-46502769 Msa0294560:CDS 25.0%
!! AAGATTTTTGTCTATTATGC+AGG + chr2_3:46502805-46502824 Msa0294560:intron 25.0%
!!! TACTCTAATCTTTGTTATTG+TGG + chr2_3:46503402-46503421 Msa0294560:intron 25.0%
!!! ACTCTAATCTTTGTTATTGT+GGG + chr2_3:46503403-46503422 Msa0294560:intron 25.0%
! AATACATCAACTTCATGAAA+AGG - chr2_3:46503567-46503586 None:intergenic 25.0%
! TACATTATATTTGAACTGCA+GGG - chr2_3:46503636-46503655 None:intergenic 25.0%
! ATACATTATATTTGAACTGC+AGG - chr2_3:46503637-46503656 None:intergenic 25.0%
!! TGAGATTTCTTTCTTTTATG+AGG - chr2_3:46503857-46503876 None:intergenic 25.0%
!! TCTGTGTTGTGATATTATTT+TGG + chr2_3:46504007-46504026 Msa0294560:intron 25.0%
!! ATTATGTTGTCATTTCTTCT+TGG - chr2_3:46504068-46504087 None:intergenic 25.0%
! TTTGAAAACGACAAATAAAG+AGG - chr2_3:46504133-46504152 None:intergenic 25.0%
!!! CAGTAAATTGTTACTTTTGA+CGG - chr2_3:46504277-46504296 None:intergenic 25.0%
! TCTTGAAGATTAGAATTCTT+GGG - chr2_3:46504677-46504696 None:intergenic 25.0%
! ATCTTGAAGATTAGAATTCT+TGG - chr2_3:46504678-46504697 None:intergenic 25.0%
! AATCTTCAAGATTAGAGAAA+CGG + chr2_3:46504686-46504705 Msa0294560:intron 25.0%
!! TGTAATTTGGTAAGTTTGTT+AGG - chr2_3:46504958-46504977 None:intergenic 25.0%
! GTTAGTACAAGTTTGTAATT+TGG - chr2_3:46504971-46504990 None:intergenic 25.0%
! TATTTGGACAATCTAACAAA+TGG - chr2_3:46505041-46505060 None:intergenic 25.0%
!! ATTTTCTTGATAAATTGGGA+TGG + chr2_3:46505101-46505120 Msa0294560:intron 25.0%
! ATCATCAAAGAAGAAAAGAA+AGG - chr2_3:46505538-46505557 None:intergenic 25.0%
!! TTGATATTCTGAAAGATAAG+TGG + chr2_3:46505606-46505625 Msa0294560:CDS 25.0%
!! TCTATTAACTACAGTTTTTC+AGG - chr2_3:46505727-46505746 None:intergenic 25.0%
! TTCAAAAAAGTTCAATTTGG+AGG - chr2_3:46505824-46505843 None:intergenic 25.0%
!! GTTGAAAGAATTTTTCATGT+TGG + chr2_3:46505874-46505893 Msa0294560:intron 25.0%
!!! TTCATGTTGGTAAAGTTTTA+TGG + chr2_3:46505887-46505906 Msa0294560:intron 25.0%
!!! TCATGTTGGTAAAGTTTTAT+GGG + chr2_3:46505888-46505907 Msa0294560:intron 25.0%
! AAGAGCTTGAATACTAAAAT+AGG - chr2_3:46506159-46506178 None:intergenic 25.0%
! TTGGAACTTGTATGAATATA+TGG + chr2_3:46506590-46506609 Msa0294560:three_prime_UTR 25.0%
!! TCAACTGCTAAATGTAATTT+TGG + chr2_3:46506649-46506668 Msa0294560:three_prime_UTR 25.0%
!! TTTTGAATAAGCTTTTCCTT+TGG + chr2_3:46506688-46506707 Msa0294560:three_prime_UTR 25.0%
AATTTGATTCATGTGCGATA+AGG + chr2_3:46502079-46502098 Msa0294560:intron 30.0%
AACATAAATCATACACACCA+AGG - chr2_3:46502308-46502327 None:intergenic 30.0%
! ATCCCTATTTTCGTGTTATA+TGG + chr2_3:46502386-46502405 Msa0294560:intron 30.0%
CTACCATATAACACGAAAAT+AGG - chr2_3:46502392-46502411 None:intergenic 30.0%
TATTTCAATGTGATGATCCT+TGG + chr2_3:46502638-46502657 Msa0294560:CDS 30.0%
TAAACACAATACGCATTTCA+AGG - chr2_3:46502718-46502737 None:intergenic 30.0%
GCAGTGAATTAGAAATATCA+TGG - chr2_3:46502876-46502895 None:intergenic 30.0%
! ATCCTGTTAATAATTTTGCG+AGG + chr2_3:46502963-46502982 Msa0294560:intron 30.0%
AAACGATTTGATTAATGAGG+TGG + chr2_3:46502987-46503006 Msa0294560:intron 30.0%
AACGATTTGATTAATGAGGT+GGG + chr2_3:46502988-46503007 Msa0294560:intron 30.0%
TAAACACATGATAAGAAGAC+AGG - chr2_3:46503090-46503109 None:intergenic 30.0%
AGTTCAAGAAGATGTATACA+GGG - chr2_3:46503121-46503140 None:intergenic 30.0%
TAGTTCAAGAAGATGTATAC+AGG - chr2_3:46503122-46503141 None:intergenic 30.0%
!! TTCTTTGAAGTTCGTTATCT+TGG + chr2_3:46503144-46503163 Msa0294560:intron 30.0%
GGTAAAAATATATAACGCCT+AGG - chr2_3:46503201-46503220 None:intergenic 30.0%
! TCATAGAAGTATACACACAT+GGG - chr2_3:46503247-46503266 None:intergenic 30.0%
! ATCATAGAAGTATACACACA+TGG - chr2_3:46503248-46503267 None:intergenic 30.0%
! ACTTCTATGATCATTTCTAG+TGG + chr2_3:46503257-46503276 Msa0294560:intron 30.0%
! TTTCTCGTATGTAACTCTTT+TGG + chr2_3:46503296-46503315 Msa0294560:intron 30.0%
TAGAAGAGCTAATAAGTTAC+TGG + chr2_3:46503357-46503376 Msa0294560:intron 30.0%
AGAAGAGCTAATAAGTTACT+GGG + chr2_3:46503358-46503377 Msa0294560:intron 30.0%
AACTTCATGAAAAGGAAAAG+TGG - chr2_3:46503559-46503578 None:intergenic 30.0%
!!! TAGTGTGTCTCATTTTAACT+TGG + chr2_3:46503656-46503675 Msa0294560:intron 30.0%
!!! AGTGTGTCTCATTTTAACTT+GGG + chr2_3:46503657-46503676 Msa0294560:intron 30.0%
GACTTGGAAATACATTTGTA+TGG + chr2_3:46503683-46503702 Msa0294560:intron 30.0%
GGAAATACATTTGTATGGAA+AGG + chr2_3:46503688-46503707 Msa0294560:intron 30.0%
! TGCTTCTCTGATCATATTTT+AGG + chr2_3:46503757-46503776 Msa0294560:intron 30.0%
! GCTTCTCTGATCATATTTTA+GGG + chr2_3:46503758-46503777 Msa0294560:intron 30.0%
!!! TCTGATCATATTTTAGGGTT+TGG + chr2_3:46503763-46503782 Msa0294560:intron 30.0%
!!! TCATATTTTAGGGTTTGGAA+AGG + chr2_3:46503768-46503787 Msa0294560:intron 30.0%
! TTTCTTTCTTTTATGAGGAG+AGG - chr2_3:46503852-46503871 None:intergenic 30.0%
!!! AGTGTTTTGTTTCCATTACT+AGG + chr2_3:46503893-46503912 Msa0294560:intron 30.0%
!!! GTGTTTTGTTTCCATTACTA+GGG + chr2_3:46503894-46503913 Msa0294560:intron 30.0%
!!! TGTTTTGTTTCCATTACTAG+GGG + chr2_3:46503895-46503914 Msa0294560:intron 30.0%
!! AGTTAAGGGTATCATAGAAA+AGG + chr2_3:46504241-46504260 Msa0294560:intron 30.0%
CGTCAAAAGTAACAATTTAC+TGG + chr2_3:46504275-46504294 Msa0294560:intron 30.0%
!! TCTATTTAGCCGTCATTTTA+AGG - chr2_3:46504323-46504342 None:intergenic 30.0%
GATCGATGTCAAACTTATAA+AGG + chr2_3:46504376-46504395 Msa0294560:intron 30.0%
ATCTTCAAGATTAGAGAAAC+GGG + chr2_3:46504687-46504706 Msa0294560:intron 30.0%
ATAAAGATGAAGATTGCACA+TGG + chr2_3:46504728-46504747 Msa0294560:intron 30.0%
ATTGTGACTAGAGAATTATC+TGG - chr2_3:46504846-46504865 None:intergenic 30.0%
GTCTTTAAATAGCCATCAAT+CGG - chr2_3:46504898-46504917 None:intergenic 30.0%
!!! GTTGTTAAGAGTTGCTATTT+TGG - chr2_3:46504933-46504952 None:intergenic 30.0%
!! AATTTGGTAAGTTTGTTAGG+TGG - chr2_3:46504955-46504974 None:intergenic 30.0%
AATAATGCTCAATTTCTACG+TGG + chr2_3:46505129-46505148 Msa0294560:intron 30.0%
TAAACAATCCACAATTCTGA+GGG - chr2_3:46505313-46505332 None:intergenic 30.0%
ATAAACAATCCACAATTCTG+AGG - chr2_3:46505314-46505333 None:intergenic 30.0%
ATATCATCCTAACATTGACA+AGG + chr2_3:46505489-46505508 Msa0294560:CDS 30.0%
AAAGAAGAAAAGAAAGGCAA+GGG - chr2_3:46505532-46505551 None:intergenic 30.0%
! ATTTTCACCTTTTACTCTAG+TGG + chr2_3:46505673-46505692 Msa0294560:intron 30.0%
AGTTAATCCACTAGAGTAAA+AGG - chr2_3:46505683-46505702 None:intergenic 30.0%
!!! CAGTTTTTCAGGAAATGAAT+TGG - chr2_3:46505716-46505735 None:intergenic 30.0%
AAAACTGTAGTTAACTCAAG+TGG + chr2_3:46505789-46505808 Msa0294560:intron 30.0%
!! AAGTTTTATGGGAAAACAGA+TGG + chr2_3:46505899-46505918 Msa0294560:intron 30.0%
GCATTCAACCAGATAATTTA+TGG - chr2_3:46505958-46505977 None:intergenic 30.0%
GTTGAATGCATAATTGATTG+TGG + chr2_3:46505969-46505988 Msa0294560:intron 30.0%
CAGAAATCAAAAGTAAGATC+CGG - chr2_3:46506026-46506045 None:intergenic 30.0%
AAAATTAACCAGCTGTGTAT+TGG + chr2_3:46506094-46506113 Msa0294560:intron 30.0%
TTGGTCTCAAATAACAATAG+TGG + chr2_3:46506436-46506455 Msa0294560:three_prime_UTR 30.0%
GAAAGCAATAAACATGTAAC+CGG - chr2_3:46506550-46506569 None:intergenic 30.0%
GTTTATTGCTTTCTATCTTC+CGG + chr2_3:46506557-46506576 Msa0294560:three_prime_UTR 30.0%
TTCATACAAGTTCCAATAGA+AGG - chr2_3:46506586-46506605 None:intergenic 30.0%
TTACATTTAGCAGTTGAAGA+TGG - chr2_3:46506646-46506665 None:intergenic 30.0%
TTCAATAATATTCTCAGCCA+TGG + chr2_3:46506805-46506824 Msa0294560:three_prime_UTR 30.0%
GCGTAGTAGAATTTCACAAA+GGG - chr2_3:46501387-46501406 None:intergenic 35.0%
AGAGAAGAGAGAGAAAAAGA+AGG - chr2_3:46501424-46501443 None:intergenic 35.0%
GGTTACTGTTAGCCATTATT+GGG - chr2_3:46501486-46501505 None:intergenic 35.0%
AGGTTACTGTTAGCCATTAT+TGG - chr2_3:46501487-46501506 None:intergenic 35.0%
AGTGTTTCTTTGATCTCTTC+AGG + chr2_3:46501898-46501917 Msa0294560:intron 35.0%
GATGAGAATAAGACAATACC+TGG - chr2_3:46501947-46501966 None:intergenic 35.0%
!! TCGGTTAATTGGAAAGTGTT+TGG + chr2_3:46501991-46502010 Msa0294560:intron 35.0%
! GTCTTTTGCAAGATACGTTA+TGG + chr2_3:46502053-46502072 Msa0294560:intron 35.0%
GCTTCATAGGGTAAAATTCA+AGG - chr2_3:46502134-46502153 None:intergenic 35.0%
! GTGCTTCTTAGATTTTACCT+TGG + chr2_3:46502288-46502307 Msa0294560:intron 35.0%
! CAATAACGGTTTGTTCAATG+CGG - chr2_3:46502488-46502507 None:intergenic 35.0%
CAACACAGCAAAACAAAACA+AGG - chr2_3:46502549-46502568 None:intergenic 35.0%
GGTGTAAAACCAAGTTGTTA+GGG - chr2_3:46502697-46502716 None:intergenic 35.0%
AGGTGTAAAACCAAGTTGTT+AGG - chr2_3:46502698-46502717 None:intergenic 35.0%
!! TCTATTATGCAGGCTTGTTT+TGG + chr2_3:46502815-46502834 Msa0294560:intron 35.0%
!! CTATTATGCAGGCTTGTTTT+GGG + chr2_3:46502816-46502835 Msa0294560:intron 35.0%
!!! GTTTTGGGAATGATTCTGAA+AGG + chr2_3:46502831-46502850 Msa0294560:intron 35.0%
TGCCTCGCAAAATTATTAAC+AGG - chr2_3:46502968-46502987 None:intergenic 35.0%
GGCAAACGATTTGATTAATG+AGG + chr2_3:46502984-46503003 Msa0294560:intron 35.0%
GTTCAAGAAGATGTATACAG+GGG - chr2_3:46503120-46503139 None:intergenic 35.0%
CTAGGTTCAGATGCATATAA+GGG - chr2_3:46503183-46503202 None:intergenic 35.0%
AAGTTACTGGGTCGAATAAA+TGG + chr2_3:46503370-46503389 Msa0294560:intron 35.0%
GGAAATTGATGCATGAGTTA+TGG + chr2_3:46503487-46503506 Msa0294560:intron 35.0%
!!! ATTTTAACTTGGGTGAGACT+TGG + chr2_3:46503667-46503686 Msa0294560:intron 35.0%
! AACAACTAGCTTGACTATAC+TGG + chr2_3:46503806-46503825 Msa0294560:intron 35.0%
! TTTCTTTTATGAGGAGAGGT+AGG - chr2_3:46503848-46503867 None:intergenic 35.0%
!!! GTTTTGTTTCCATTACTAGG+GGG + chr2_3:46503896-46503915 Msa0294560:intron 35.0%
TTTGCCTGAAGAATATCCAA+TGG + chr2_3:46503940-46503959 Msa0294560:CDS 35.0%
TAACAATTTACTGGTCCTCT+TGG + chr2_3:46504284-46504303 Msa0294560:intron 35.0%
TGTCAAACTTATAAAGGCCA+TGG + chr2_3:46504382-46504401 Msa0294560:intron 35.0%
GTCAAACTTATAAAGGCCAT+GGG + chr2_3:46504383-46504402 Msa0294560:intron 35.0%
AGCTAAAAAAGTAGCTTCTC+CGG + chr2_3:46504644-46504663 Msa0294560:intron 35.0%
ATGATAACCTTACACACCAA+AGG + chr2_3:46504803-46504822 Msa0294560:intron 35.0%
ACACATACTGTGACTCTATT+TGG - chr2_3:46505057-46505076 None:intergenic 35.0%
ATTTACGAAAGAGGTCTAGT+AGG + chr2_3:46505244-46505263 Msa0294560:intron 35.0%
AAGCAAGGCATGATTGAATT+AGG - chr2_3:46505442-46505461 None:intergenic 35.0%
AAGCATACCTTGTCAATGTT+AGG - chr2_3:46505499-46505518 None:intergenic 35.0%
CAAAGAAGAAAAGAAAGGCA+AGG - chr2_3:46505533-46505552 None:intergenic 35.0%
!!! CTAGTGGATTAACTTTTTGC+TGG + chr2_3:46505689-46505708 Msa0294560:intron 35.0%
CTTACTCAATTTGTATGCGA+AGG + chr2_3:46505995-46506014 Msa0294560:intron 35.0%
CTTGCATATACGTAACATTG+TGG + chr2_3:46506053-46506072 Msa0294560:intron 35.0%
TACGTAACATTGTGGAAAGT+CGG + chr2_3:46506061-46506080 Msa0294560:intron 35.0%
CATTATATCCAATACACAGC+TGG - chr2_3:46506105-46506124 None:intergenic 35.0%
TTAGCAATGTTCTCAGAAAG+AGG - chr2_3:46506206-46506225 None:intergenic 35.0%
!! TAAGCATTGGAAATCTAACG+AGG + chr2_3:46506223-46506242 Msa0294560:CDS 35.0%
ATATAATCTGGTCCACTCTT+TGG - chr2_3:46506384-46506403 None:intergenic 35.0%
!! GACAATTTGGTGGATACTTT+TGG + chr2_3:46506417-46506436 Msa0294560:exon 35.0%
GAGGAATTGTCTAAACTATG+TGG + chr2_3:46506501-46506520 Msa0294560:three_prime_UTR 35.0%
! CATTTTCCTCTTATAGCTTC+CGG + chr2_3:46506528-46506547 Msa0294560:three_prime_UTR 35.0%
! TGATAATGTGGACAAACCAA+AGG - chr2_3:46506707-46506726 None:intergenic 35.0%
!! TTGGTTTGTCCACATTATCA+TGG + chr2_3:46506707-46506726 Msa0294560:three_prime_UTR 35.0%
TGTCCACATTATCATGGATT+TGG + chr2_3:46506713-46506732 Msa0294560:three_prime_UTR 35.0%
! AAGCCAAATCCATGATAATG+TGG - chr2_3:46506719-46506738 None:intergenic 35.0%
!! AGTGAAGAGTACCCTTTAAA+CGG + chr2_3:46506745-46506764 Msa0294560:three_prime_UTR 35.0%
ATTCACACTACCCGTTTAAA+GGG - chr2_3:46506759-46506778 None:intergenic 35.0%
CGCGTAGTAGAATTTCACAA+AGG - chr2_3:46501388-46501407 None:intergenic 40.0%
GATTGCAAAGTACGCAATAG+GGG - chr2_3:46501461-46501480 None:intergenic 40.0%
CGATTGCAAAGTACGCAATA+GGG - chr2_3:46501462-46501481 None:intergenic 40.0%
TCGATTGCAAAGTACGCAAT+AGG - chr2_3:46501463-46501482 None:intergenic 40.0%
CTTTGCAATCGACCCAATAA+TGG + chr2_3:46501471-46501490 Msa0294560:exon 40.0%
TCATCCTTCTGTAGTGTAGA+AGG + chr2_3:46501962-46501981 Msa0294560:intron 40.0%
GAAACCTTCTACACTACAGA+AGG - chr2_3:46501969-46501988 None:intergenic 40.0%
GTAGTGTAGAAGGTTTCACT+CGG + chr2_3:46501972-46501991 Msa0294560:intron 40.0%
GAAGGTTTCACTCGGTTAAT+TGG + chr2_3:46501980-46501999 Msa0294560:intron 40.0%
!! ATTGGAAAGTGTTTGGTGTG+TGG + chr2_3:46501998-46502017 Msa0294560:intron 40.0%
! TTGGTTCGTATCAGAACGAT+AGG + chr2_3:46502227-46502246 Msa0294560:intron 40.0%
! TAAGAAGCACAAATACCCCT+CGG - chr2_3:46502278-46502297 None:intergenic 40.0%
GCTATAGAGCTATATCACAG+TGG + chr2_3:46502352-46502371 Msa0294560:intron 40.0%
ACTATGCAGCAATGGAATAG+CGG - chr2_3:46502450-46502469 None:intergenic 40.0%
GAAATTCCACTATGCAGCAA+TGG - chr2_3:46502458-46502477 None:intergenic 40.0%
CTTCATAAGGAGACTGAGTT+GGG - chr2_3:46502664-46502683 None:intergenic 40.0%
TAGTGATGACCCTAACAACT+TGG + chr2_3:46502685-46502704 Msa0294560:CDS 40.0%
GAGGTGGGCATAAGAATATT+TGG + chr2_3:46503003-46503022 Msa0294560:intron 40.0%
GCATATAAGGGCTAACAATG+TGG - chr2_3:46503171-46503190 None:intergenic 40.0%
CCTAGGTTCAGATGCATATA+AGG - chr2_3:46503184-46503203 None:intergenic 40.0%
CCTTATATGCATCTGAACCT+AGG + chr2_3:46503181-46503200 Msa0294560:intron 40.0%
ACGACTGTGACATGTACATA+TGG - chr2_3:46503222-46503241 None:intergenic 40.0%
!! TTTTGGTGCACCAAAAAGAC+TGG + chr2_3:46503313-46503332 Msa0294560:intron 40.0%
! TTTGGTGCACCAAAAAGACT+GGG + chr2_3:46503314-46503333 Msa0294560:intron 40.0%
! AGTGTTTGACCCAGTCTTTT+TGG - chr2_3:46503326-46503345 None:intergenic 40.0%
TTGAAAACTCCCCCTAGTAA+TGG - chr2_3:46503908-46503927 None:intergenic 40.0%
GTCATTTCTTCTTGGTAGAC+AGG - chr2_3:46504060-46504079 None:intergenic 40.0%
CCTCTGCAGTGAATAGTTAA+GGG - chr2_3:46504193-46504212 None:intergenic 40.0%
CCTTAACTATTCACTGCAGA+GGG + chr2_3:46504191-46504210 Msa0294560:intron 40.0%
GGTTATTTACACATGCCAAG+AGG - chr2_3:46504302-46504321 None:intergenic 40.0%
TTACAGAATATCTCGTCCCA+TGG - chr2_3:46504402-46504421 None:intergenic 40.0%
TTCAAAGGGGGAGATATGAA+GGG - chr2_3:46504475-46504494 None:intergenic 40.0%
TTTCAAAGGGGGAGATATGA+AGG - chr2_3:46504476-46504495 None:intergenic 40.0%
AAAAAGTAGCTTCTCCGGTT+AGG + chr2_3:46504649-46504668 Msa0294560:intron 40.0%
AGAATTCTTGGGTTCCTAAC+CGG - chr2_3:46504666-46504685 None:intergenic 40.0%
!! GTGAAATGAGAGTGTTCCTT+TGG - chr2_3:46504822-46504841 None:intergenic 40.0%
TTGAAGCCATTACTACTTCC+AGG + chr2_3:46505173-46505192 Msa0294560:intron 40.0%
TGAAGCCATTACTACTTCCA+GGG + chr2_3:46505174-46505193 Msa0294560:intron 40.0%
CTAAACCCTGGAAGTAGTAA+TGG - chr2_3:46505182-46505201 None:intergenic 40.0%
CATTACTACTTCCAGGGTTT+AGG + chr2_3:46505180-46505199 Msa0294560:intron 40.0%
ACAGCTATCGTGTATCTGAT+AGG + chr2_3:46505214-46505233 Msa0294560:intron 40.0%
CAGCTATCGTGTATCTGATA+GGG + chr2_3:46505215-46505234 Msa0294560:intron 40.0%
AGCTATCGTGTATCTGATAG+GGG + chr2_3:46505216-46505235 Msa0294560:intron 40.0%
GGGGTTTACATTTACGAAAG+AGG + chr2_3:46505235-46505254 Msa0294560:intron 40.0%
! TTTTTGTCAAGAACCTGACC+TGG - chr2_3:46505468-46505487 None:intergenic 40.0%
! GTTTGAAATTCGATGCAGCT+TGG + chr2_3:46505572-46505591 Msa0294560:intron 40.0%
AAGTACAGTGCGAATCTGAA+GGG - chr2_3:46505639-46505658 None:intergenic 40.0%
AAAGTACAGTGCGAATCTGA+AGG - chr2_3:46505640-46505659 None:intergenic 40.0%
! AGATTCGCACTGTACTTTTG+AGG + chr2_3:46505642-46505661 Msa0294560:CDS 40.0%
TCTCAGAAAGAGGATCATCT+GGG - chr2_3:46506196-46506215 None:intergenic 40.0%
TTCTCAGAAAGAGGATCATC+TGG - chr2_3:46506197-46506216 None:intergenic 40.0%
CTGAGAACATTGCTAAGCAT+TGG + chr2_3:46506210-46506229 Msa0294560:CDS 40.0%
TTAAATCTGCAGCCAAAGAG+TGG + chr2_3:46506369-46506388 Msa0294560:intron 40.0%
CGGAAGCTATAAGAGGAAAA+TGG - chr2_3:46506530-46506549 None:intergenic 40.0%
ATGTAACCGGAAGCTATAAG+AGG - chr2_3:46506537-46506556 None:intergenic 40.0%
AAGTTCCAATAGAAGGCTTC+CGG - chr2_3:46506579-46506598 None:intergenic 40.0%
!! GTGAAGAGTACCCTTTAAAC+GGG + chr2_3:46506746-46506765 Msa0294560:three_prime_UTR 40.0%
GATTCACACTACCCGTTTAA+AGG - chr2_3:46506760-46506779 None:intergenic 40.0%
! TTGACTTCTCTGAGGAAAGT+GGG - chr2_3:46506887-46506906 None:intergenic 40.0%
AGTACGCAATAGGGGTTTGA+GGG - chr2_3:46501453-46501472 None:intergenic 45.0%
AAGTACGCAATAGGGGTTTG+AGG - chr2_3:46501454-46501473 None:intergenic 45.0%
! CCTTGATGATTCTTCGAGGA+AGG - chr2_3:46501507-46501526 None:intergenic 45.0%
CCTTCCTCGAAGAATCATCA+AGG + chr2_3:46501504-46501523 Msa0294560:CDS 45.0%
! CGAACCTTGATGATTCTTCG+AGG - chr2_3:46501511-46501530 None:intergenic 45.0%
GATTCATGTGCGATAAGGCT+TGG + chr2_3:46502084-46502103 Msa0294560:intron 45.0%
CTTCGTGTCTGTGCTTCATA+GGG - chr2_3:46502146-46502165 None:intergenic 45.0%
TCTTCGTGTCTGTGCTTCAT+AGG - chr2_3:46502147-46502166 None:intergenic 45.0%
GCTATTCCATTGCTGCATAG+TGG + chr2_3:46502449-46502468 Msa0294560:intron 45.0%
TGGAATTAGTGCATCCCCTT+CGG + chr2_3:46502601-46502620 Msa0294560:CDS 45.0%
ACCGCATATTGTCTTCCGAA+GGG - chr2_3:46502619-46502638 None:intergenic 45.0%
TACCGCATATTGTCTTCCGA+AGG - chr2_3:46502620-46502639 None:intergenic 45.0%
CCTTCATAAGGAGACTGAGT+TGG - chr2_3:46502665-46502684 None:intergenic 45.0%
CCAACTCAGTCTCCTTATGA+AGG + chr2_3:46502662-46502681 Msa0294560:CDS 45.0%
GGGTCATCACTACCTTCATA+AGG - chr2_3:46502677-46502696 None:intergenic 45.0%
GATGCATGAGTTATGGCACT+TGG + chr2_3:46503494-46503513 Msa0294560:intron 45.0%
CATGAGTTATGGCACTTGGT+TGG + chr2_3:46503498-46503517 Msa0294560:intron 45.0%
TTATGGCACTTGGTTGGAGT+GGG + chr2_3:46503504-46503523 Msa0294560:intron 45.0%
GCAGCCATTGGATATTCTTC+AGG - chr2_3:46503947-46503966 None:intergenic 45.0%
ATATCCAATGGCTGCTCCAA+AGG + chr2_3:46503952-46503971 Msa0294560:CDS 45.0%
CCCTTAACTATTCACTGCAG+AGG + chr2_3:46504190-46504209 Msa0294560:intron 45.0%
CCCTCTGCAGTGAATAGTTA+AGG - chr2_3:46504194-46504213 None:intergenic 45.0%
TTCACTGCAGAGGGAGAAAT+AGG + chr2_3:46504200-46504219 Msa0294560:intron 45.0%
TCGCTGCATCAGTTTCAAAG+GGG - chr2_3:46504488-46504507 None:intergenic 45.0%
CTCGCTGCATCAGTTTCAAA+GGG - chr2_3:46504489-46504508 None:intergenic 45.0%
TCTCGCTGCATCAGTTTCAA+AGG - chr2_3:46504490-46504509 None:intergenic 45.0%
GAAACTGATGCAGCGAGAAA+TGG + chr2_3:46504492-46504511 Msa0294560:intron 45.0%
! GAGTGTTCCTTTGGTGTGTA+AGG - chr2_3:46504813-46504832 None:intergenic 45.0%
AATAGCCATCAATCGGCAGA+GGG - chr2_3:46504891-46504910 None:intergenic 45.0%
AAATAGCCATCAATCGGCAG+AGG - chr2_3:46504892-46504911 None:intergenic 45.0%
TGCTCAATTTCTACGTGGTC+TGG + chr2_3:46505134-46505153 Msa0294560:intron 45.0%
GCTCAATTTCTACGTGGTCT+GGG + chr2_3:46505135-46505154 Msa0294560:intron 45.0%
TACGAAAGAGGTCTAGTAGG+AGG + chr2_3:46505247-46505266 Msa0294560:intron 45.0%
! ACAATCCACAATTCTGAGGG+AGG - chr2_3:46505310-46505329 None:intergenic 45.0%
AATCATGCCTTGCTTCTTCC+AGG + chr2_3:46505447-46505466 Msa0294560:intron 45.0%
TTTGTATGCGAAGGTTCAGC+CGG + chr2_3:46506004-46506023 Msa0294560:intron 45.0%
GAAAGAGGATCATCTGGGTT+TGG - chr2_3:46506191-46506210 None:intergenic 45.0%
TTGGAAATCTAACGAGGCTG+AGG + chr2_3:46506229-46506248 Msa0294560:CDS 45.0%
TGGACCAGATTATATGCCAG+TGG + chr2_3:46506389-46506408 Msa0294560:CDS 45.0%
AGCACCACTGGCATATAATC+TGG - chr2_3:46506396-46506415 None:intergenic 45.0%
ACCAAATTGTCAAGCACCAC+TGG - chr2_3:46506408-46506427 None:intergenic 45.0%
AGTGGTGCTTGACAATTTGG+TGG + chr2_3:46506407-46506426 Msa0294560:exon 45.0%
ATCTTCCGGAAGCCTTCTAT+TGG + chr2_3:46506571-46506590 Msa0294560:three_prime_UTR 45.0%
!!! TTCTTTTTATTTTATTTTTA+AGG + chr2_3:46505270-46505289 Msa0294560:intron 5.0%
GAACGATAGGTTTCCGACAC+CGG + chr2_3:46502240-46502259 Msa0294560:intron 50.0%
AACGATAGGTTTCCGACACC+GGG + chr2_3:46502241-46502260 Msa0294560:intron 50.0%
GTTTGTTCAATGCGGATCGC+AGG - chr2_3:46502480-46502499 None:intergenic 50.0%
CTGCAGATCACGGGCAATAA+CGG - chr2_3:46502502-46502521 None:intergenic 50.0%
TGCTGTCAACTGCAGATCAC+GGG - chr2_3:46502511-46502530 None:intergenic 50.0%
GTGCTGTCAACTGCAGATCA+CGG - chr2_3:46502512-46502531 None:intergenic 50.0%
GAAGGGGATGCACTAATTCC+AGG - chr2_3:46502602-46502621 None:intergenic 50.0%
CCGCATATTGTCTTCCGAAG+GGG - chr2_3:46502618-46502637 None:intergenic 50.0%
CCCCTTCGGAAGACAATATG+CGG + chr2_3:46502615-46502634 Msa0294560:CDS 50.0%
GTTATGGCACTTGGTTGGAG+TGG + chr2_3:46503503-46503522 Msa0294560:intron 50.0%
!! AGTACCTTTGGAGCAGCCAT+TGG - chr2_3:46503959-46503978 None:intergenic 50.0%
ACTGCAGAGGGAGAAATAGG+TGG + chr2_3:46504203-46504222 Msa0294560:intron 50.0%
CGCTGCATCAGTTTCAAAGG+GGG - chr2_3:46504487-46504506 None:intergenic 50.0%
ATAGCCATCAATCGGCAGAG+GGG - chr2_3:46504890-46504909 None:intergenic 50.0%
! GACTGTCGTTTCCTAAACCC+TGG - chr2_3:46505194-46505213 None:intergenic 50.0%
TCATGCCTCCCTCAGAATTG+TGG + chr2_3:46505302-46505321 Msa0294560:intron 50.0%
AACCTGACCTGGAAGAAGCA+AGG - chr2_3:46505457-46505476 None:intergenic 50.0%
GAAATTCGATGCAGCTTGGC+AGG + chr2_3:46505576-46505595 Msa0294560:intron 50.0%
TACAGTGCGAATCTGAAGGG+CGG - chr2_3:46505636-46505655 None:intergenic 50.0%
GCCAGTGGTGCTTGACAATT+TGG + chr2_3:46506404-46506423 Msa0294560:exon 50.0%
GATTAAGCGTGTCCCGGTGT+CGG - chr2_3:46502256-46502275 None:intergenic 55.0%
! TGATCTGATGATGCAGCGCC+TGG + chr2_3:46502581-46502600 Msa0294560:intron 55.0%
! AAGGAGACTGAGTTGGGCCA+AGG - chr2_3:46502658-46502677 None:intergenic 55.0%
AGGGGGAGATATGAAGGGCA+AGG - chr2_3:46504470-46504489 None:intergenic 55.0%
! CTTTCCCCTCTGCCGATTGA+TGG + chr2_3:46504883-46504902 Msa0294560:intron 55.0%
TGCCTTGCTTCTTCCAGGTC+AGG + chr2_3:46505452-46505471 Msa0294560:intron 55.0%
ACAGTGCGAATCTGAAGGGC+GGG - chr2_3:46505635-46505654 None:intergenic 55.0%
CAGCGTTTGCTCAGTGAGCC+AGG + chr2_3:46501926-46501945 Msa0294560:CDS 60.0%
ACCGGGACACGCTTAATCCG+AGG + chr2_3:46502258-46502277 Msa0294560:intron 60.0%
CCCTCGGATTAAGCGTGTCC+CGG - chr2_3:46502262-46502281 None:intergenic 60.0%
CCGGGACACGCTTAATCCGA+GGG + chr2_3:46502259-46502278 Msa0294560:intron 60.0%
CGGGACACGCTTAATCCGAG+GGG + chr2_3:46502260-46502279 Msa0294560:intron 60.0%
GAGGCTGAGGCTGTTGAGAC+AGG + chr2_3:46506242-46506261 Msa0294560:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 46501350 46506906 46501350 ID=Msa0294560;Name=Msa0294560
chr2_3 mRNA 46501350 46506906 46501350 ID=Msa0294560-mRNA-1;Parent=Msa0294560;Name=Msa0294560-mRNA-1;_AED=0.07;_eAED=0.07;_QI=140|0.85|0.87|1|1|1|8|488|185
chr2_3 exon 46501350 46501525 46501350 ID=Msa0294560-mRNA-1:exon:14502;Parent=Msa0294560-mRNA-1
chr2_3 exon 46501920 46501947 46501920 ID=Msa0294560-mRNA-1:exon:14503;Parent=Msa0294560-mRNA-1
chr2_3 exon 46502597 46502779 46502597 ID=Msa0294560-mRNA-1:exon:14504;Parent=Msa0294560-mRNA-1
chr2_3 exon 46503915 46503973 46503915 ID=Msa0294560-mRNA-1:exon:14505;Parent=Msa0294560-mRNA-1
chr2_3 exon 46505469 46505510 46505469 ID=Msa0294560-mRNA-1:exon:14506;Parent=Msa0294560-mRNA-1
chr2_3 exon 46505590 46505663 46505590 ID=Msa0294560-mRNA-1:exon:14507;Parent=Msa0294560-mRNA-1
chr2_3 exon 46506166 46506263 46506166 ID=Msa0294560-mRNA-1:exon:14508;Parent=Msa0294560-mRNA-1
chr2_3 exon 46506381 46506906 46506381 ID=Msa0294560-mRNA-1:exon:14509;Parent=Msa0294560-mRNA-1
chr2_3 five_prime_UTR 46501350 46501489 46501350 ID=Msa0294560-mRNA-1:five_prime_utr;Parent=Msa0294560-mRNA-1
chr2_3 CDS 46501490 46501525 46501490 ID=Msa0294560-mRNA-1:cds;Parent=Msa0294560-mRNA-1
chr2_3 CDS 46501920 46501947 46501920 ID=Msa0294560-mRNA-1:cds;Parent=Msa0294560-mRNA-1
chr2_3 CDS 46502597 46502779 46502597 ID=Msa0294560-mRNA-1:cds;Parent=Msa0294560-mRNA-1
chr2_3 CDS 46503915 46503973 46503915 ID=Msa0294560-mRNA-1:cds;Parent=Msa0294560-mRNA-1
chr2_3 CDS 46505469 46505510 46505469 ID=Msa0294560-mRNA-1:cds;Parent=Msa0294560-mRNA-1
chr2_3 CDS 46505590 46505663 46505590 ID=Msa0294560-mRNA-1:cds;Parent=Msa0294560-mRNA-1
chr2_3 CDS 46506166 46506263 46506166 ID=Msa0294560-mRNA-1:cds;Parent=Msa0294560-mRNA-1
chr2_3 CDS 46506381 46506418 46506381 ID=Msa0294560-mRNA-1:cds;Parent=Msa0294560-mRNA-1
chr2_3 three_prime_UTR 46506419 46506906 46506419 ID=Msa0294560-mRNA-1:three_prime_utr;Parent=Msa0294560-mRNA-1
Gene Sequence

>Msa0294560

ATGGCTAACAGTAACCTTCCTCGAAGAATCATCAAGGAAACACAGCGTTTGCTCAGTGAGCCAGCGCCTGGAATTAGTGCATCCCCTTCGGAAGACAATATGCGGTATTTCAATGTGATGATCCTTGGCCCAACTCAGTCTCCTTATGAAGGTAGTGATGACCCTAACAACTTGGTTTTACACCTTGAAATGCGTATTGTGTTTATCTTTGATAGAAATGGGATATTGATTATTTTGGGGCTTTTGAGGGGAGTTTTCAAGCTAGAACTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCAGGTTCTTGACAAAAATATATCATCCTAACATTGACAAGCTTGGCAGGATATGTCTTGATATTCTGAAAGATAAGTGGAGTCCCGCCCTTCAGATTCGCACTGTACTTTTGAGTATTCAAGCTCTTTTGAGTGCACCAAACCCAGATGATCCTCTTTCTGAGAACATTGCTAAGCATTGGAAATCTAACGAGGCTGAGGCTGTTGAGACAGCCAAAGAGTGGACCAGATTATATGCCAGTGGTGCTTGA
Protein sequence

>Msa0294560

MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGSDDPNNLVLHLEMRIVFIFDRNGILIILGLLRGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA*