Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772230 | G7K876 | 94.268 | 157 | 6 | 1 | 1 | 154 | 1 | 157 | 1.29e-96 | 285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052610 | Msa0772230 | 0.802148 | 6.436483e-49 | -8.615850e-47 |
| Msa0092740 | Msa0772230 | -0.802661 | 5.047157e-49 | -8.615850e-47 |
| Msa0709780 | Msa0772230 | 0.814566 | 1.443097e-51 | -8.615850e-47 |
| Msa0772230 | Msa1258710 | 0.816634 | 4.997883e-52 | -8.615850e-47 |
| Msa0772230 | Msa1333560 | 0.810999 | 8.717070e-51 | -8.615850e-47 |
| Msa0772230 | Msa1401390 | 0.804146 | 2.485256e-49 | -8.615850e-47 |
| Msa0137610 | Msa0772230 | -0.805457 | 1.322868e-49 | -8.615850e-47 |
| Msa0434920 | Msa0772230 | 0.822671 | 2.091047e-53 | -8.615850e-47 |
| Msa0435370 | Msa0772230 | 0.804248 | 2.366694e-49 | -8.615850e-47 |
| Msa0435420 | Msa0772230 | 0.809646 | 1.707494e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772230 | MtrunA17_Chr5g0409761 | 94.268 | 157 | 6 | 1 | 1 | 154 | 1 | 157 | 2.49e-100 | 285 |
| Msa0772230 | MtrunA17_Chr1g0170021 | 91.837 | 49 | 4 | 0 | 106 | 154 | 1 | 49 | 2.36e-27 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772230 | AT5G45590.1 | 47.159 | 176 | 67 | 6 | 2 | 154 | 1 | 173 | 1.39e-39 | 132 |
Find 53 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGCAGTTTGATAAAATAT+TGG | 0.300777 | 5_2:+46542294 | Msa0772230:three_prime_UTR |
| AAATCAAATGTGCTACAAAA+AGG | 0.306645 | 5_2:-46542266 | None:intergenic |
| ACCCTTACGGAGGAAGAAAA+TGG | 0.363594 | 5_2:-46537460 | None:intergenic |
| ATTGAAGAGAGTGCGAGAAA+TGG | 0.364488 | 5_2:-46537401 | None:intergenic |
| TTCTTGAGCTTCGACGTAAC+CGG | 0.380798 | 5_2:-46537638 | None:intergenic |
| TAATGAATGATGGGACCTTT+AGG | 0.380844 | 5_2:+46538771 | Msa0772230:CDS |
| ACGGCGAGAGAGCGAAGCTT+TGG | 0.390614 | 5_2:-46537310 | None:intergenic |
| TTCGACGTAACCGGAGTCAT+TGG | 0.392090 | 5_2:-46537629 | None:intergenic |
| ACCAGTCCACTTTCTGCAAC+TGG | 0.398707 | 5_2:-46542075 | None:intergenic |
| ATGGAGAAGGGAGAGATTTG+TGG | 0.398788 | 5_2:-46537441 | None:intergenic |
| ACCGAGCTTCTTCATTACTT+TGG | 0.400147 | 5_2:-46542023 | None:intergenic |
| ACGTCACAATGCTCATTTGA+AGG | 0.431879 | 5_2:+46538811 | Msa0772230:CDS |
| CGGCGAGAGAGCGAAGCTTT+GGG | 0.436962 | 5_2:-46537309 | None:intergenic |
| ACCTTTAGGCGTTGGAGGGA+GGG | 0.447972 | 5_2:+46538785 | Msa0772230:CDS |
| TTGCAGAAAGTGGACTGGTC+AGG | 0.450306 | 5_2:+46542079 | Msa0772230:three_prime_UTR |
| GCCCTCCCTCCAACGCCTAA+AGG | 0.473388 | 5_2:-46538786 | None:intergenic |
| ATTACTTTGGCATATGCCAC+AGG | 0.473820 | 5_2:-46542010 | None:intergenic |
| AGGTTCAGATTAATGAATGA+TGG | 0.478461 | 5_2:+46538761 | Msa0772230:CDS |
| GACCTTTAGGCGTTGGAGGG+AGG | 0.486811 | 5_2:+46538784 | Msa0772230:CDS |
| AGAGATTTGTGGAGAGACGA+GGG | 0.491217 | 5_2:-46537430 | None:intergenic |
| TTATAAGTGGCATGCTTTAG+TGG | 0.491426 | 5_2:+46542201 | Msa0772230:three_prime_UTR |
| GAGAGATTTGTGGAGAGACG+AGG | 0.505377 | 5_2:-46537431 | None:intergenic |
| TTGCTGCCAGTTGCAGAAAG+TGG | 0.507478 | 5_2:+46542069 | Msa0772230:three_prime_UTR |
| TGGAGGAAACGGCGAGAAGA+TGG | 0.520137 | 5_2:-46537346 | None:intergenic |
| ATGATGGGACCTTTAGGCGT+TGG | 0.525720 | 5_2:+46538777 | Msa0772230:CDS |
| ATGGGACCTTTAGGCGTTGG+AGG | 0.529126 | 5_2:+46538780 | Msa0772230:CDS |
| GAAGCGGAGTGAAGTGGTTG+TGG | 0.534119 | 5_2:-46537379 | None:intergenic |
| TATAAGTGGCATGCTTTAGT+GGG | 0.535444 | 5_2:+46542202 | Msa0772230:three_prime_UTR |
| GGCATGTTTCGTCGAGGGAA+AGG | 0.539147 | 5_2:+46537591 | Msa0772230:CDS |
| TATGCCACAGGGACAAGAGC+AGG | 0.545659 | 5_2:-46541998 | None:intergenic |
| TGGGACCTTTAGGCGTTGGA+GGG | 0.558733 | 5_2:+46538781 | Msa0772230:CDS |
| GAGAAGAAAGCCAATGACTC+CGG | 0.563221 | 5_2:+46537619 | Msa0772230:CDS |
| TTGCGTGGAAGAGTTATAAG+TGG | 0.564098 | 5_2:+46542188 | Msa0772230:three_prime_UTR |
| CGGAGGAAGAAAATGGAGAA+GGG | 0.570430 | 5_2:-46537453 | None:intergenic |
| GAGAGTGCGAGAAATGGAAG+CGG | 0.575366 | 5_2:-46537395 | None:intergenic |
| AGTGAGGCATGTTTCGTCGA+GGG | 0.576144 | 5_2:+46537586 | Msa0772230:CDS |
| GCCAAAGTAATGAAGAAGCT+CGG | 0.576667 | 5_2:+46542022 | Msa0772230:CDS |
| GTAATGAGTGGTGGAGGAAA+CGG | 0.577154 | 5_2:-46537357 | None:intergenic |
| GGTTCAGATTAATGAATGAT+GGG | 0.577928 | 5_2:+46538762 | Msa0772230:CDS |
| AATAGTTGATTCTTCAAGTG+AGG | 0.581795 | 5_2:+46537570 | Msa0772230:intron |
| AGATGGTTGTAGAGATTGAA+CGG | 0.592297 | 5_2:-46537329 | None:intergenic |
| ACGGAGGAAGAAAATGGAGA+AGG | 0.596657 | 5_2:-46537454 | None:intergenic |
| GGAGCAGGTCTTACAAGTCG+AGG | 0.597749 | 5_2:+46538741 | Msa0772230:intron |
| TGTTTCTTTCTCTATTTGCG+TGG | 0.598761 | 5_2:+46542173 | Msa0772230:three_prime_UTR |
| GTGGTTGTGGTAATGAGTGG+TGG | 0.611455 | 5_2:-46537366 | None:intergenic |
| GCCAGTTGCAGAAAGTGGAC+TGG | 0.618857 | 5_2:+46542074 | Msa0772230:three_prime_UTR |
| GTTGTGGTAATGAGTGGTGG+AGG | 0.629721 | 5_2:-46537363 | None:intergenic |
| GAAATGGAAGCGGAGTGAAG+TGG | 0.632454 | 5_2:-46537385 | None:intergenic |
| TTACTTTGGCATATGCCACA+GGG | 0.639641 | 5_2:-46542009 | None:intergenic |
| AAAACCTGCTCTTGTCCCTG+TGG | 0.644927 | 5_2:+46541994 | Msa0772230:CDS |
| CAGATTCTAAAATGTGAATG+TGG | 0.646618 | 5_2:-46542129 | None:intergenic |
| AAGTGAGGCATGTTTCGTCG+AGG | 0.653477 | 5_2:+46537585 | Msa0772230:CDS |
| GAAGTGGTTGTGGTAATGAG+TGG | 0.690846 | 5_2:-46537369 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTATAAAAATATTTT+TGG | + | chr5_2:46539643-46539662 | Msa0772230:intron | 0.0% |
| !! | TAAAATAAATAAAAAATATA+GGG | - | chr5_2:46541495-46541514 | None:intergenic | 0.0% |
| !! | TTAAAATAAATAAAAAATAT+AGG | - | chr5_2:46541496-46541515 | None:intergenic | 0.0% |
| !! | TTGTATTTGATATATTAATT+AGG | + | chr5_2:46539334-46539353 | Msa0772230:intron | 10.0% |
| !! | TGTATTTGATATATTAATTA+GGG | + | chr5_2:46539335-46539354 | Msa0772230:intron | 10.0% |
| !! | AAATTAAAAAATACTGTAAT+GGG | - | chr5_2:46541867-46541886 | None:intergenic | 10.0% |
| !! | TTTCATAAATCAAAATAAAA+TGG | - | chr5_2:46541890-46541909 | None:intergenic | 10.0% |
| !!! | TTTTAGTAATAATAATGATA+AGG | + | chr5_2:46542335-46542354 | Msa0772230:three_prime_UTR | 10.0% |
| !!! | TTATTTTTGTGTATTTAGTT+TGG | + | chr5_2:46538696-46538715 | Msa0772230:intron | 15.0% |
| !!! | AATACTATTTAATTTTGTAC+AGG | + | chr5_2:46539876-46539895 | Msa0772230:intron | 15.0% |
| !! | ATGAAATTTATACAACATAA+TGG | - | chr5_2:46539962-46539981 | None:intergenic | 15.0% |
| !!! | TCTAAAAGTTTAAGATTTTA+AGG | + | chr5_2:46539989-46540008 | Msa0772230:intron | 15.0% |
| !! | GAAATTAAAAAATACTGTAA+TGG | - | chr5_2:46541868-46541887 | None:intergenic | 15.0% |
| !! | TAAACAAAATAGACCTAAAT+TGG | - | chr5_2:46538186-46538205 | None:intergenic | 20.0% |
| !!! | TAATAACTTGTGATACTTTT+TGG | + | chr5_2:46538330-46538349 | Msa0772230:intron | 20.0% |
| !!! | AATAACTTGTGATACTTTTT+GGG | + | chr5_2:46538331-46538350 | Msa0772230:intron | 20.0% |
| !!! | AGAAAACTGTTTGATTTTAT+CGG | + | chr5_2:46538414-46538433 | Msa0772230:intron | 20.0% |
| !! | TATATAAAATAGGACATGTT+TGG | - | chr5_2:46538517-46538536 | None:intergenic | 20.0% |
| !!! | ACAGAATAAGGTTTTATTTA+TGG | + | chr5_2:46538857-46538876 | Msa0772230:intron | 20.0% |
| !! | TTGTTGAAATGTAAGTATAT+AGG | + | chr5_2:46538900-46538919 | Msa0772230:intron | 20.0% |
| !!! | TCAATTAATGAATGTTTCTA+AGG | + | chr5_2:46539216-46539235 | Msa0772230:intron | 20.0% |
| !!! | CATTTTCAAGTTAGTTATTA+GGG | - | chr5_2:46539563-46539582 | None:intergenic | 20.0% |
| !!! | TCATTTTCAAGTTAGTTATT+AGG | - | chr5_2:46539564-46539583 | None:intergenic | 20.0% |
| !! | TTAAGGAACATAAGAATTAT+TGG | + | chr5_2:46540006-46540025 | Msa0772230:intron | 20.0% |
| !!! | GAAATACAGTTCTAAATTAT+AGG | - | chr5_2:46540210-46540229 | None:intergenic | 20.0% |
| !!! | AAATCAACTCAATTTTTCTT+AGG | - | chr5_2:46540257-46540276 | None:intergenic | 20.0% |
| !! | ATTAATTAGTTAGCATATGA+AGG | + | chr5_2:46540289-46540308 | Msa0772230:intron | 20.0% |
| !! | TTATTAGTCAGAAAATTGAA+TGG | - | chr5_2:46540344-46540363 | None:intergenic | 20.0% |
| !!! | TCTTATTTTTTTAGAAGCAA+AGG | - | chr5_2:46540482-46540501 | None:intergenic | 20.0% |
| !!! | TTACGCACAATATATATTTT+TGG | + | chr5_2:46540638-46540657 | Msa0772230:intron | 20.0% |
| !!! | TACGCACAATATATATTTTT+GGG | + | chr5_2:46540639-46540658 | Msa0772230:intron | 20.0% |
| !! | TCTATTATACAAGAACTTAA+GGG | - | chr5_2:46540742-46540761 | None:intergenic | 20.0% |
| !!! | AAATTCTCTAAAGAAATTCA+CGG | - | chr5_2:46540801-46540820 | None:intergenic | 20.0% |
| !! | TTTCCATTAATATTTAACAG+AGG | + | chr5_2:46540819-46540838 | Msa0772230:intron | 20.0% |
| !! | AAGAATCAAAATTAACTGTT+TGG | - | chr5_2:46541831-46541850 | None:intergenic | 20.0% |
| !!! | AAACAGTTAATTTTGATTCT+TGG | + | chr5_2:46541830-46541849 | Msa0772230:intron | 20.0% |
| !!! | AACAGTTAATTTTGATTCTT+GGG | + | chr5_2:46541831-46541850 | Msa0772230:intron | 20.0% |
| !!! | TGATTTATGAAATTTTTCTC+AGG | + | chr5_2:46541898-46541917 | Msa0772230:intron | 20.0% |
| !!! | GATTTATGAAATTTTTCTCA+GGG | + | chr5_2:46541899-46541918 | Msa0772230:intron | 20.0% |
| !! | TTAGCAGTTTGATAAAATAT+TGG | + | chr5_2:46542294-46542313 | Msa0772230:three_prime_UTR | 20.0% |
| !!! | TGTTTGATTTTTTGTGTGAA+TGG | + | chr5_2:46537544-46537563 | Msa0772230:intron | 25.0% |
| ! | GCTTATGAAAAAAAACAGTT+TGG | + | chr5_2:46538070-46538089 | Msa0772230:intron | 25.0% |
| !!! | ACAGTTTGGTTTGAATTTAT+TGG | + | chr5_2:46538084-46538103 | Msa0772230:intron | 25.0% |
| ! | GCATAGCTCATATATAAAAT+AGG | - | chr5_2:46538527-46538546 | None:intergenic | 25.0% |
| ! | ATAAAACCTTATTCTGTCTA+AGG | - | chr5_2:46538854-46538873 | None:intergenic | 25.0% |
| !! | TATGGTATATGATAATGTCA+TGG | + | chr5_2:46538875-46538894 | Msa0772230:intron | 25.0% |
| ! | CCTATTTATCTAACTATCTA+AGG | - | chr5_2:46539138-46539157 | None:intergenic | 25.0% |
| ! | CCTTAGATAGTTAGATAAAT+AGG | + | chr5_2:46539135-46539154 | Msa0772230:intron | 25.0% |
| ! | TAATAGCTAAATTGTGAGTT+TGG | + | chr5_2:46539248-46539267 | Msa0772230:intron | 25.0% |
| ! | AAAACACCACATGAAAAATA+GGG | + | chr5_2:46539362-46539381 | Msa0772230:intron | 25.0% |
| ! | AATAATGCATTAAAGCTGTT+GGG | + | chr5_2:46539486-46539505 | Msa0772230:intron | 25.0% |
| ! | TTGAAAATGACATTGTAAGA+TGG | + | chr5_2:46539574-46539593 | Msa0772230:intron | 25.0% |
| !!! | TGTTATGATATAAAAGCACT+AGG | + | chr5_2:46539612-46539631 | Msa0772230:intron | 25.0% |
| ! | GACATAGAAACAATTTATGA+TGG | + | chr5_2:46539719-46539738 | Msa0772230:intron | 25.0% |
| ! | TTAGGAGTTAGAAATTAGAA+AGG | + | chr5_2:46540041-46540060 | Msa0772230:intron | 25.0% |
| ! | TTCTGACTAATAAATGTTAG+TGG | + | chr5_2:46540351-46540370 | Msa0772230:intron | 25.0% |
| ! | AGAATACACTATAGACAATT+TGG | + | chr5_2:46540383-46540402 | Msa0772230:intron | 25.0% |
| ! | TAAACTTGTAAACATAGTGA+TGG | + | chr5_2:46540436-46540455 | Msa0772230:intron | 25.0% |
| !!! | AGGGTATGTTATTTCTTTAA+AGG | + | chr5_2:46540554-46540573 | Msa0772230:intron | 25.0% |
| !!! | TATTTCTTTAAAGGAGTGTT+TGG | + | chr5_2:46540563-46540582 | Msa0772230:intron | 25.0% |
| !!! | TGTCGTTTTAATAAACTTCA+GGG | - | chr5_2:46540682-46540701 | None:intergenic | 25.0% |
| !!! | TGTAAGTTTTAAAACTAGAG+GGG | - | chr5_2:46540712-46540731 | None:intergenic | 25.0% |
| !!! | GTGTAAGTTTTAAAACTAGA+GGG | - | chr5_2:46540713-46540732 | None:intergenic | 25.0% |
| !!! | AGTGTAAGTTTTAAAACTAG+AGG | - | chr5_2:46540714-46540733 | None:intergenic | 25.0% |
| ! | GTCTATTATACAAGAACTTA+AGG | - | chr5_2:46540743-46540762 | None:intergenic | 25.0% |
| ! | GAACCTCTGTTAAATATTAA+TGG | - | chr5_2:46540825-46540844 | None:intergenic | 25.0% |
| ! | TGATATCTTCCTTTATATTG+TGG | + | chr5_2:46540917-46540936 | Msa0772230:intron | 25.0% |
| ! | TCAATATGGGTGAAAATTAA+CGG | + | chr5_2:46541333-46541352 | Msa0772230:intron | 25.0% |
| !! | CTATGGTATCATTTCTTTTA+GGG | - | chr5_2:46541676-46541695 | None:intergenic | 25.0% |
| ! | TCTTGTAATTGATGAATTTC+TGG | + | chr5_2:46541933-46541952 | Msa0772230:intron | 25.0% |
| ! | AAATCAAATGTGCTACAAAA+AGG | - | chr5_2:46542269-46542288 | None:intergenic | 25.0% |
| !! | TTTTGGTTGGAATCAGATTT+TGG | - | chr5_2:46537272-46537291 | None:intergenic | 30.0% |
| ! | AGTAATCTCTGCATCATTTT+TGG | - | chr5_2:46537289-46537308 | None:intergenic | 30.0% |
| ! | AATAGTTGATTCTTCAAGTG+AGG | + | chr5_2:46537570-46537589 | Msa0772230:intron | 30.0% |
| AAAACACACACACATTGAAA+GGG | - | chr5_2:46537717-46537736 | None:intergenic | 30.0% | |
| !!! | TGTGTGTTTTGTTTGGAATT+TGG | + | chr5_2:46537727-46537746 | Msa0772230:intron | 30.0% |
| ! | TTGTTTGGAATTTGGAATTG+TGG | + | chr5_2:46537735-46537754 | Msa0772230:intron | 30.0% |
| !!! | AATTGTGGAGGTTTAGTTTT+GGG | + | chr5_2:46537750-46537769 | Msa0772230:intron | 30.0% |
| AAACACTTACAAGACTGTTT+AGG | + | chr5_2:46538001-46538020 | Msa0772230:intron | 30.0% | |
| !! | TGAGTCTGTTTTTCCAATTT+AGG | + | chr5_2:46538170-46538189 | Msa0772230:intron | 30.0% |
| ACCTACACAACTTAAACTTA+GGG | - | chr5_2:46538253-46538272 | None:intergenic | 30.0% | |
| AACCTACACAACTTAAACTT+AGG | - | chr5_2:46538254-46538273 | None:intergenic | 30.0% | |
| !!! | GGTTTATTTTAGAATCCGTT+TGG | + | chr5_2:46538270-46538289 | Msa0772230:intron | 30.0% |
| !!! | ATTTTAGAATCCGTTTGGAT+TGG | + | chr5_2:46538275-46538294 | Msa0772230:intron | 30.0% |
| ATAATCCAATCCAATCCAAA+CGG | - | chr5_2:46538288-46538307 | None:intergenic | 30.0% | |
| ATGAAAAAGCAACTGATAGA+TGG | - | chr5_2:46538589-46538608 | None:intergenic | 30.0% | |
| ! | GTGAGTGATTTTACTGTATT+TGG | + | chr5_2:46538720-46538739 | Msa0772230:intron | 30.0% |
| AGGTTCAGATTAATGAATGA+TGG | + | chr5_2:46538761-46538780 | Msa0772230:CDS | 30.0% | |
| GGTTCAGATTAATGAATGAT+GGG | + | chr5_2:46538762-46538781 | Msa0772230:CDS | 30.0% | |
| ! | ACTTTTCCTTAGACAGAATA+AGG | + | chr5_2:46538845-46538864 | Msa0772230:intron | 30.0% |
| GTAATTAGTGATCGAGTATA+TGG | - | chr5_2:46538962-46538981 | None:intergenic | 30.0% | |
| GTTCATAGCTTAGTAAAGAA+GGG | - | chr5_2:46539033-46539052 | None:intergenic | 30.0% | |
| AGTTCATAGCTTAGTAAAGA+AGG | - | chr5_2:46539034-46539053 | None:intergenic | 30.0% | |
| ACTTGAGCATATTCACAATA+TGG | + | chr5_2:46539051-46539070 | Msa0772230:intron | 30.0% | |
| TTAGCTACTATAAATGCAGT+AGG | - | chr5_2:46539100-46539119 | None:intergenic | 30.0% | |
| AAATAGGTCAAATACCTAAC+AGG | + | chr5_2:46539151-46539170 | Msa0772230:intron | 30.0% | |
| GAAAACACCACATGAAAAAT+AGG | + | chr5_2:46539361-46539380 | Msa0772230:intron | 30.0% | |
| AAACACCACATGAAAAATAG+GGG | + | chr5_2:46539363-46539382 | Msa0772230:intron | 30.0% | |
| CAATAATGCATTAAAGCTGT+TGG | + | chr5_2:46539485-46539504 | Msa0772230:intron | 30.0% | |
| GAAACAATTTATGATGGCTA+TGG | + | chr5_2:46539725-46539744 | Msa0772230:intron | 30.0% | |
| TGTTAGGAATGTTATTGGAT+AGG | - | chr5_2:46539816-46539835 | None:intergenic | 30.0% | |
| GCTAATGTTAGGAATGTTAT+TGG | - | chr5_2:46539821-46539840 | None:intergenic | 30.0% | |
| !! | ACTAGTTTGCACATTTTCAA+AGG | + | chr5_2:46539924-46539943 | Msa0772230:intron | 30.0% |
| ! | TTGCACATTTTCAAAGGAAA+AGG | + | chr5_2:46539930-46539949 | Msa0772230:intron | 30.0% |
| AGGAACATAAGAATTATTGG+TGG | + | chr5_2:46540009-46540028 | Msa0772230:intron | 30.0% | |
| GGAACATAAGAATTATTGGT+GGG | + | chr5_2:46540010-46540029 | Msa0772230:intron | 30.0% | |
| AGAATTATTGGTGGGATTAA+TGG | + | chr5_2:46540018-46540037 | Msa0772230:intron | 30.0% | |
| TTACCCAGTGATGATTTAAA+AGG | - | chr5_2:46540110-46540129 | None:intergenic | 30.0% | |
| AAACTTGTAGTGGTATAAGA+CGG | - | chr5_2:46540172-46540191 | None:intergenic | 30.0% | |
| CCACAAAAAAAAACTTGTAG+TGG | - | chr5_2:46540182-46540201 | None:intergenic | 30.0% | |
| !!! | CCACTACAAGTTTTTTTTTG+TGG | + | chr5_2:46540179-46540198 | Msa0772230:intron | 30.0% |
| !! | GTCGTTTTAATAAACTTCAG+GGG | - | chr5_2:46540681-46540700 | None:intergenic | 30.0% |
| !!! | GTGTCGTTTTAATAAACTTC+AGG | - | chr5_2:46540683-46540702 | None:intergenic | 30.0% |
| !!! | GTAAGTTTTAAAACTAGAGG+GGG | - | chr5_2:46540711-46540730 | None:intergenic | 30.0% |
| TTAACGGTCTTAACAAACAA+GGG | - | chr5_2:46540774-46540793 | None:intergenic | 30.0% | |
| AGAAATTCACGGAAAGTTAA+CGG | - | chr5_2:46540790-46540809 | None:intergenic | 30.0% | |
| AAGATATCAAAAGCAGCTTT+CGG | - | chr5_2:46540906-46540925 | None:intergenic | 30.0% | |
| TATCTTCCTTTATATTGTGG+AGG | + | chr5_2:46540920-46540939 | Msa0772230:intron | 30.0% | |
| ATGTATCAGCTATTTGAATG+TGG | + | chr5_2:46541071-46541090 | Msa0772230:intron | 30.0% | |
| AAACGAAAGAGTTCATAAAC+AGG | - | chr5_2:46541152-46541171 | None:intergenic | 30.0% | |
| TTGACAAAAGAATCCTAATC+TGG | + | chr5_2:46541187-46541206 | Msa0772230:intron | 30.0% | |
| TAGTATAGCATCTTCATCAT+TGG | + | chr5_2:46541229-46541248 | Msa0772230:intron | 30.0% | |
| !!! | AGTTGTTTTTAATGAGCAAG+TGG | - | chr5_2:46541286-46541305 | None:intergenic | 30.0% |
| TAACAGAAGATGGATCAATA+TGG | + | chr5_2:46541319-46541338 | Msa0772230:intron | 30.0% | |
| AACAGAAGATGGATCAATAT+GGG | + | chr5_2:46541320-46541339 | Msa0772230:intron | 30.0% | |
| AGTAACGATGTTAACAAGTA+AGG | + | chr5_2:46541359-46541378 | Msa0772230:intron | 30.0% | |
| GTAACGATGTTAACAAGTAA+GGG | + | chr5_2:46541360-46541379 | Msa0772230:intron | 30.0% | |
| !!! | TGTGTAGGTTTTAAAACTAG+AGG | + | chr5_2:46541420-46541439 | Msa0772230:intron | 30.0% |
| !!! | GTGTAGGTTTTAAAACTAGA+GGG | + | chr5_2:46541421-46541440 | Msa0772230:intron | 30.0% |
| !!! | TGTAGGTTTTAAAACTAGAG+GGG | + | chr5_2:46541422-46541441 | Msa0772230:intron | 30.0% |
| ! | TGTCCTTTTCATAAACCTTA+GGG | + | chr5_2:46541452-46541471 | Msa0772230:intron | 30.0% |
| ! | CCTATGGTATCATTTCTTTT+AGG | - | chr5_2:46541677-46541696 | None:intergenic | 30.0% |
| CCTAAAAGAAATGATACCAT+AGG | + | chr5_2:46541674-46541693 | Msa0772230:intron | 30.0% | |
| CATTGATATAGACTTTCCTA+TGG | - | chr5_2:46541693-46541712 | None:intergenic | 30.0% | |
| ! | TCAATGCTTTAAACAGATGT+CGG | + | chr5_2:46541707-46541726 | Msa0772230:intron | 30.0% |
| TCAGTATTATAAGACCAACA+TGG | + | chr5_2:46541769-46541788 | Msa0772230:intron | 30.0% | |
| !! | CAGATTCTAAAATGTGAATG+TGG | - | chr5_2:46542132-46542151 | None:intergenic | 30.0% |
| !!! | TTGGAATCAGATTTTGGCTA+TGG | - | chr5_2:46537266-46537285 | None:intergenic | 35.0% |
| !!! | ATCTCTGCATCATTTTTGGT+TGG | - | chr5_2:46537285-46537304 | None:intergenic | 35.0% |
| AGATGGTTGTAGAGATTGAA+CGG | - | chr5_2:46537332-46537351 | None:intergenic | 35.0% | |
| CAAAACACACACACATTGAA+AGG | - | chr5_2:46537718-46537737 | None:intergenic | 35.0% | |
| !! | CAATGTGTGTGTGTTTTGTT+TGG | + | chr5_2:46537720-46537739 | Msa0772230:intron | 35.0% |
| ! | TTTGGAATTTGGAATTGTGG+AGG | + | chr5_2:46537738-46537757 | Msa0772230:intron | 35.0% |
| !! | GAATTGTGGAGGTTTAGTTT+TGG | + | chr5_2:46537749-46537768 | Msa0772230:intron | 35.0% |
| !!! | GGTTTAGTTTTGGGTCTATT+TGG | + | chr5_2:46537759-46537778 | Msa0772230:intron | 35.0% |
| ! | TAAACTTAGGGTGTCACATA+CGG | - | chr5_2:46538241-46538260 | None:intergenic | 35.0% |
| !! | ACCCTAAGTTTAAGTTGTGT+AGG | + | chr5_2:46538249-46538268 | Msa0772230:intron | 35.0% |
| !! | GATTTTACTGTATTTGGAGC+AGG | + | chr5_2:46538726-46538745 | Msa0772230:intron | 35.0% |
| ! | TAATGAATGATGGGACCTTT+AGG | + | chr5_2:46538771-46538790 | Msa0772230:CDS | 35.0% |
| AATTGTTGAGATGGGGATAA+TGG | - | chr5_2:46538984-46539003 | None:intergenic | 35.0% | |
| ACCTCATGAATTGTTGAGAT+GGG | - | chr5_2:46538992-46539011 | None:intergenic | 35.0% | |
| TTCACGTATGTGCATAAAAC+AGG | - | chr5_2:46539302-46539321 | None:intergenic | 35.0% | |
| TATGCACATACGTGAAACTA+TGG | + | chr5_2:46539306-46539325 | Msa0772230:intron | 35.0% | |
| !! | AGTAACCCCTATTTTTCATG+TGG | - | chr5_2:46539371-46539390 | None:intergenic | 35.0% |
| ACATGAAAAATAGGGGTTAC+TGG | + | chr5_2:46539370-46539389 | Msa0772230:intron | 35.0% | |
| TGTATCCAATACAGCATACA+TGG | - | chr5_2:46539416-46539435 | None:intergenic | 35.0% | |
| GTATTGGATACACGTCAATA+TGG | + | chr5_2:46539424-46539443 | Msa0772230:intron | 35.0% | |
| AGATGACACTAACATGTTTG+TGG | + | chr5_2:46539510-46539529 | Msa0772230:intron | 35.0% | |
| GATGACACTAACATGTTTGT+GGG | + | chr5_2:46539511-46539530 | Msa0772230:intron | 35.0% | |
| GAATGTTATTGGATAGGCTT+CGG | - | chr5_2:46539810-46539829 | None:intergenic | 35.0% | |
| ACATTCCTAACATTAGCCAA+TGG | + | chr5_2:46539824-46539843 | Msa0772230:intron | 35.0% | |
| CATTCCTAACATTAGCCAAT+GGG | + | chr5_2:46539825-46539844 | Msa0772230:intron | 35.0% | |
| ATTCCTAACATTAGCCAATG+GGG | + | chr5_2:46539826-46539845 | Msa0772230:intron | 35.0% | |
| TATTGGTGGGATTAATGGTT+AGG | + | chr5_2:46540023-46540042 | Msa0772230:intron | 35.0% | |
| ! | ACTGCCTTTTAAATCATCAC+TGG | + | chr5_2:46540103-46540122 | Msa0772230:intron | 35.0% |
| ! | CTGCCTTTTAAATCATCACT+GGG | + | chr5_2:46540104-46540123 | Msa0772230:intron | 35.0% |
| AACTTGTAGTGGTATAAGAC+GGG | - | chr5_2:46540171-46540190 | None:intergenic | 35.0% | |
| ! | GAAAATGTGATTTGCGTACT+TGG | - | chr5_2:46540235-46540254 | None:intergenic | 35.0% |
| GTAAACATAGTGATGGCATT+TGG | + | chr5_2:46540443-46540462 | Msa0772230:intron | 35.0% | |
| !! | TTAAAGGAGTGTTTGGATTG+AGG | + | chr5_2:46540570-46540589 | Msa0772230:intron | 35.0% |
| !! | TAAAGGAGTGTTTGGATTGA+GGG | + | chr5_2:46540571-46540590 | Msa0772230:intron | 35.0% |
| GTTAACGGTCTTAACAAACA+AGG | - | chr5_2:46540775-46540794 | None:intergenic | 35.0% | |
| GAAAAGCCTCCACAATATAA+AGG | - | chr5_2:46540929-46540948 | None:intergenic | 35.0% | |
| ! | TACAATGGCCAATTTTTCCT+TGG | + | chr5_2:46541010-46541029 | Msa0772230:intron | 35.0% |
| GAAGGTTACCAAGGAAAAAT+TGG | - | chr5_2:46541021-46541040 | None:intergenic | 35.0% | |
| !! | TTTGTGGTGTCTAGTTCTTA+CGG | + | chr5_2:46541042-46541061 | Msa0772230:intron | 35.0% |
| GAAAAATGCTGCAAAGTTTG+AGG | - | chr5_2:46541107-46541126 | None:intergenic | 35.0% | |
| AGAATCCTAATCTGGATCAT+AGG | + | chr5_2:46541195-46541214 | Msa0772230:intron | 35.0% | |
| TGAAACCTATGATCCAGATT+AGG | - | chr5_2:46541203-46541222 | None:intergenic | 35.0% | |
| TTTAATGAGCAAGTGGAACT+TGG | - | chr5_2:46541279-46541298 | None:intergenic | 35.0% | |
| TCCTTCAATGTAACAGAAGA+TGG | + | chr5_2:46541309-46541328 | Msa0772230:intron | 35.0% | |
| TCCATCTTCTGTTACATTGA+AGG | - | chr5_2:46541313-46541332 | None:intergenic | 35.0% | |
| TCTATTTCATGAGAACTCGA+GGG | + | chr5_2:46541392-46541411 | Msa0772230:intron | 35.0% | |
| !!! | GTAGGTTTTAAAACTAGAGG+GGG | + | chr5_2:46541423-46541442 | Msa0772230:intron | 35.0% |
| ! | GTGTCCTTTTCATAAACCTT+AGG | + | chr5_2:46541451-46541470 | Msa0772230:intron | 35.0% |
| ! | GTCCTTTTCATAAACCTTAG+GGG | + | chr5_2:46541453-46541472 | Msa0772230:intron | 35.0% |
| !!! | CATTTCTTTTAGGGTGTCTT+TGG | - | chr5_2:46541667-46541686 | None:intergenic | 35.0% |
| ! | TGTTTGCTAAGAAACCATGT+TGG | - | chr5_2:46541786-46541805 | None:intergenic | 35.0% |
| ATGGTTTCTTAGCAAACACA+AGG | + | chr5_2:46541788-46541807 | Msa0772230:intron | 35.0% | |
| TGGTTTCTTAGCAAACACAA+GGG | + | chr5_2:46541789-46541808 | Msa0772230:intron | 35.0% | |
| TGTTTCTTTCTCTATTTGCG+TGG | + | chr5_2:46542173-46542192 | Msa0772230:three_prime_UTR | 35.0% | |
| TTATAAGTGGCATGCTTTAG+TGG | + | chr5_2:46542201-46542220 | Msa0772230:three_prime_UTR | 35.0% | |
| TATAAGTGGCATGCTTTAGT+GGG | + | chr5_2:46542202-46542221 | Msa0772230:three_prime_UTR | 35.0% | |
| ! | ATTGAAGAGAGTGCGAGAAA+TGG | - | chr5_2:46537404-46537423 | None:intergenic | 40.0% |
| ! | TCCATTTTCTTCCTCCGTAA+GGG | + | chr5_2:46537459-46537478 | Msa0772230:intron | 40.0% |
| TCGAAAGCAAGTAACCCTTA+CGG | - | chr5_2:46537476-46537495 | None:intergenic | 40.0% | |
| AGACTGTTTAGGAGAGCTTA+TGG | + | chr5_2:46538012-46538031 | Msa0772230:intron | 40.0% | |
| ! | AGAATCCGTTTGGATTGGAT+TGG | + | chr5_2:46538280-46538299 | Msa0772230:intron | 40.0% |
| TATGACATCCACAAGCTCTA+TGG | + | chr5_2:46538373-46538392 | Msa0772230:intron | 40.0% | |
| TAGATGGAGCTAGAGCAATA+CGG | - | chr5_2:46538573-46538592 | None:intergenic | 40.0% | |
| ACGTCACAATGCTCATTTGA+AGG | + | chr5_2:46538811-46538830 | Msa0772230:CDS | 40.0% | |
| CCTCATGAATTGTTGAGATG+GGG | - | chr5_2:46538991-46539010 | None:intergenic | 40.0% | |
| CACCTCATGAATTGTTGAGA+TGG | - | chr5_2:46538993-46539012 | None:intergenic | 40.0% | |
| ATGCAGTAGGAAACCTGATT+AGG | - | chr5_2:46539087-46539106 | None:intergenic | 40.0% | |
| ! | AATAGGGGTTACTGGTTAGT+AGG | + | chr5_2:46539378-46539397 | Msa0772230:intron | 40.0% |
| CACTAACATGTTTGTGGGTT+TGG | + | chr5_2:46539516-46539535 | Msa0772230:intron | 40.0% | |
| ATGTGCAAACTAGTTGTGTG+TGG | - | chr5_2:46539918-46539937 | None:intergenic | 40.0% | |
| ATAACATACCCTTGAAAGCC+TGG | - | chr5_2:46540546-46540565 | None:intergenic | 40.0% | |
| AGTGTTTGGATTGAGGGTTT+AGG | + | chr5_2:46540577-46540596 | Msa0772230:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr5_2:46540581-46540600 | Msa0772230:intron | 40.0% | |
| GTAGAAGAAGGAACACGAAT+AGG | - | chr5_2:46540884-46540903 | None:intergenic | 40.0% | |
| ! | TATTGTGGAGGCTTTTCGTT+TGG | + | chr5_2:46540932-46540951 | Msa0772230:intron | 40.0% |
| GAAAAATTGGCCATTGTAGC+AGG | - | chr5_2:46541008-46541027 | None:intergenic | 40.0% | |
| !! | TCCTTGGTAACCTTCTTTTG+TGG | + | chr5_2:46541026-46541045 | Msa0772230:intron | 40.0% |
| ACCACAAAAGAAGGTTACCA+AGG | - | chr5_2:46541030-46541049 | None:intergenic | 40.0% | |
| GAACTAGACACCACAAAAGA+AGG | - | chr5_2:46541039-46541058 | None:intergenic | 40.0% | |
| !! | TTGTGGTGTCTAGTTCTTAC+GGG | + | chr5_2:46541043-46541062 | Msa0772230:intron | 40.0% |
| TCAGCTATTTGAATGTGGCT+AGG | + | chr5_2:46541076-46541095 | Msa0772230:intron | 40.0% | |
| GTCTATTTCATGAGAACTCG+AGG | + | chr5_2:46541391-46541410 | Msa0772230:intron | 40.0% | |
| CTCCCCTAAGGTTTATGAAA+AGG | - | chr5_2:46541458-46541477 | None:intergenic | 40.0% | |
| ! | CTTTTCATAAACCTTAGGGG+AGG | + | chr5_2:46541456-46541475 | Msa0772230:intron | 40.0% |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr5_2:46540581-46540600 | None:intergenic | 40.0% | |
| TGTCTTTGGATTGAGGGTTT+AGG | - | chr5_2:46541653-46541672 | None:intergenic | 40.0% | |
| ! | TTAGGGTGTCTTTGGATTGA+GGG | - | chr5_2:46541659-46541678 | None:intergenic | 40.0% |
| ! | TTTAGGGTGTCTTTGGATTG+AGG | - | chr5_2:46541660-46541679 | None:intergenic | 40.0% |
| GGTTTCTTAGCAAACACAAG+GGG | + | chr5_2:46541790-46541809 | Msa0772230:intron | 40.0% | |
| GTTTCTTAGCAAACACAAGG+GGG | + | chr5_2:46541791-46541810 | Msa0772230:intron | 40.0% | |
| TTACTTTGGCATATGCCACA+GGG | - | chr5_2:46542012-46542031 | None:intergenic | 40.0% | |
| ATTACTTTGGCATATGCCAC+AGG | - | chr5_2:46542013-46542032 | None:intergenic | 40.0% | |
| GCCAAAGTAATGAAGAAGCT+CGG | + | chr5_2:46542022-46542041 | Msa0772230:CDS | 40.0% | |
| ACCGAGCTTCTTCATTACTT+TGG | - | chr5_2:46542026-46542045 | None:intergenic | 40.0% | |
| ! | ATGAAGAAGCTCGGTTTTTG+TGG | + | chr5_2:46542031-46542050 | Msa0772230:CDS | 40.0% |
| TTGCGTGGAAGAGTTATAAG+TGG | + | chr5_2:46542188-46542207 | Msa0772230:three_prime_UTR | 40.0% | |
| ! | GTAATGAGTGGTGGAGGAAA+CGG | - | chr5_2:46537360-46537379 | None:intergenic | 45.0% |
| ! | GAAGTGGTTGTGGTAATGAG+TGG | - | chr5_2:46537372-46537391 | None:intergenic | 45.0% |
| AGAGATTTGTGGAGAGACGA+GGG | - | chr5_2:46537433-46537452 | None:intergenic | 45.0% | |
| ATGGAGAAGGGAGAGATTTG+TGG | - | chr5_2:46537444-46537463 | None:intergenic | 45.0% | |
| CGGAGGAAGAAAATGGAGAA+GGG | - | chr5_2:46537456-46537475 | None:intergenic | 45.0% | |
| ACGGAGGAAGAAAATGGAGA+AGG | - | chr5_2:46537457-46537476 | None:intergenic | 45.0% | |
| ! | CTCCATTTTCTTCCTCCGTA+AGG | + | chr5_2:46537458-46537477 | Msa0772230:intron | 45.0% |
| ACCCTTACGGAGGAAGAAAA+TGG | - | chr5_2:46537463-46537482 | None:intergenic | 45.0% | |
| AAAGCAAGTAACCCTTACGG+AGG | - | chr5_2:46537473-46537492 | None:intergenic | 45.0% | |
| GAGAAGAAAGCCAATGACTC+CGG | + | chr5_2:46537619-46537638 | Msa0772230:CDS | 45.0% | |
| TTCTTGAGCTTCGACGTAAC+CGG | - | chr5_2:46537641-46537660 | None:intergenic | 45.0% | |
| ! | CATCGATAAGTGCTGCAAGA+TGG | + | chr5_2:46538048-46538067 | Msa0772230:intron | 45.0% |
| AAGCTGTTCCATAGAGCTTG+TGG | - | chr5_2:46538384-46538403 | None:intergenic | 45.0% | |
| CTAGAGCAATACGGTGTCTA+AGG | - | chr5_2:46538564-46538583 | None:intergenic | 45.0% | |
| CCCCATCTCAACAATTCATG+AGG | + | chr5_2:46538988-46539007 | Msa0772230:intron | 45.0% | |
| TGGATGCTTACCTCCTAATC+AGG | + | chr5_2:46539071-46539090 | Msa0772230:intron | 45.0% | |
| CAGTAGGAAACCTGATTAGG+AGG | - | chr5_2:46539084-46539103 | None:intergenic | 45.0% | |
| TAGCGCGTTTCTGTCATAGT+AGG | + | chr5_2:46539180-46539199 | Msa0772230:intron | 45.0% | |
| ! | TGGTTAGTAGGCATTTGCTG+TGG | + | chr5_2:46539390-46539409 | Msa0772230:intron | 45.0% |
| TGTGGCCATGTATGCTGTAT+TGG | + | chr5_2:46539408-46539427 | Msa0772230:intron | 45.0% | |
| ! | TGGTGCAGAGAGAAAGCTTT+TGG | + | chr5_2:46539745-46539764 | Msa0772230:intron | 45.0% |
| ! | TTGCCCCATTGGCTAATGTT+AGG | - | chr5_2:46539832-46539851 | None:intergenic | 45.0% |
| CATCACATGTATTGCCCCAT+TGG | - | chr5_2:46539843-46539862 | None:intergenic | 45.0% | |
| AGGCAGTGTCTGTTTACTAG+TGG | - | chr5_2:46540090-46540109 | None:intergenic | 45.0% | |
| TAGTTTGACTCATACCAGCC+AGG | + | chr5_2:46540525-46540544 | Msa0772230:intron | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr5_2:46540580-46540599 | Msa0772230:intron | 45.0% | |
| ATTGAGGGTTTAGGAGGGAA+AGG | + | chr5_2:46540586-46540605 | Msa0772230:intron | 45.0% | |
| TTGAGGGTTTAGGAGGGAAA+GGG | + | chr5_2:46540587-46540606 | Msa0772230:intron | 45.0% | |
| ! | GTTTTACTTTGCTCGCTCTC+CGG | + | chr5_2:46540854-46540873 | Msa0772230:intron | 45.0% |
| AGGAACACGAATAGGATCAC+CGG | - | chr5_2:46540876-46540895 | None:intergenic | 45.0% | |
| AAGCAGCTTTCGGTAGAAGA+AGG | - | chr5_2:46540896-46540915 | None:intergenic | 45.0% | |
| AAATTTCCCACCGCTAGTTG+TGG | + | chr5_2:46540968-46540987 | Msa0772230:intron | 45.0% | |
| TGGGGAAATTCCTGCTACAA+TGG | + | chr5_2:46540995-46541014 | Msa0772230:intron | 45.0% | |
| ! | GGAACTTGGAAAGGCATACA+TGG | - | chr5_2:46541265-46541284 | None:intergenic | 45.0% |
| TGAGCAAGTGGAACTTGGAA+AGG | - | chr5_2:46541274-46541293 | None:intergenic | 45.0% | |
| ATTTCATGAGAACTCGAGGG+AGG | + | chr5_2:46541395-46541414 | Msa0772230:intron | 45.0% | |
| AATTGCATTCACCTCCCCTA+AGG | - | chr5_2:46541470-46541489 | None:intergenic | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr5_2:46540582-46540601 | None:intergenic | 45.0% | |
| CTTTGGATTGAGGGTTTAGG+AGG | - | chr5_2:46541650-46541669 | None:intergenic | 45.0% | |
| !! | AAAATAAATAAAAAATATAG+GGG | - | chr5_2:46541494-46541513 | None:intergenic | 5.0% |
| !!! | TTTATTTTCTTTTTTAAAAT+AGG | - | chr5_2:46541607-46541626 | None:intergenic | 5.0% |
| ! | GTTGTGGTAATGAGTGGTGG+AGG | - | chr5_2:46537366-46537385 | None:intergenic | 50.0% |
| ! | GTGGTTGTGGTAATGAGTGG+TGG | - | chr5_2:46537369-46537388 | None:intergenic | 50.0% |
| GAAATGGAAGCGGAGTGAAG+TGG | - | chr5_2:46537388-46537407 | None:intergenic | 50.0% | |
| ! | GAGAGTGCGAGAAATGGAAG+CGG | - | chr5_2:46537398-46537417 | None:intergenic | 50.0% |
| GAGAGATTTGTGGAGAGACG+AGG | - | chr5_2:46537434-46537453 | None:intergenic | 50.0% | |
| AAGTGAGGCATGTTTCGTCG+AGG | + | chr5_2:46537585-46537604 | Msa0772230:CDS | 50.0% | |
| AGTGAGGCATGTTTCGTCGA+GGG | + | chr5_2:46537586-46537605 | Msa0772230:CDS | 50.0% | |
| TTCGACGTAACCGGAGTCAT+TGG | - | chr5_2:46537632-46537651 | None:intergenic | 50.0% | |
| ! | ATGATGGGACCTTTAGGCGT+TGG | + | chr5_2:46538777-46538796 | Msa0772230:CDS | 50.0% |
| ACGCGCTACTGTTTCCTGTT+AGG | - | chr5_2:46539168-46539187 | None:intergenic | 50.0% | |
| TCATACCAGCCAGGCTTTCA+AGG | + | chr5_2:46540534-46540553 | Msa0772230:intron | 50.0% | |
| CATACCAGCCAGGCTTTCAA+GGG | + | chr5_2:46540535-46540554 | Msa0772230:intron | 50.0% | |
| AACTCGAGGGAGGTTTGTGT+AGG | + | chr5_2:46541405-46541424 | Msa0772230:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | - | chr5_2:46541643-46541662 | None:intergenic | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | - | chr5_2:46541644-46541663 | None:intergenic | 50.0% | |
| AAAACCTGCTCTTGTCCCTG+TGG | + | chr5_2:46541994-46542013 | Msa0772230:CDS | 50.0% | |
| TTGCTGCCAGTTGCAGAAAG+TGG | + | chr5_2:46542069-46542088 | Msa0772230:three_prime_UTR | 50.0% | |
| ACCAGTCCACTTTCTGCAAC+TGG | - | chr5_2:46542078-46542097 | None:intergenic | 50.0% | |
| !! | TTGCAGAAAGTGGACTGGTC+AGG | + | chr5_2:46542079-46542098 | Msa0772230:three_prime_UTR | 50.0% |
| TGGAGGAAACGGCGAGAAGA+TGG | - | chr5_2:46537349-46537368 | None:intergenic | 55.0% | |
| GAAGCGGAGTGAAGTGGTTG+TGG | - | chr5_2:46537382-46537401 | None:intergenic | 55.0% | |
| GGCATGTTTCGTCGAGGGAA+AGG | + | chr5_2:46537591-46537610 | Msa0772230:CDS | 55.0% | |
| GGAGCAGGTCTTACAAGTCG+AGG | + | chr5_2:46538741-46538760 | Msa0772230:intron | 55.0% | |
| !! | ATGGGACCTTTAGGCGTTGG+AGG | + | chr5_2:46538780-46538799 | Msa0772230:CDS | 55.0% |
| !! | TGGGACCTTTAGGCGTTGGA+GGG | + | chr5_2:46538781-46538800 | Msa0772230:CDS | 55.0% |
| !! | ACCTTTAGGCGTTGGAGGGA+GGG | + | chr5_2:46538785-46538804 | Msa0772230:CDS | 55.0% |
| CATACCCTTGAAAGCCTGGC+TGG | - | chr5_2:46540542-46540561 | None:intergenic | 55.0% | |
| GGTTTAGGAGGGAAAGGGAG+AGG | + | chr5_2:46540592-46540611 | Msa0772230:intron | 55.0% | |
| TTAGGAGGGAAAGGGAGAGG+AGG | + | chr5_2:46540595-46540614 | Msa0772230:intron | 55.0% | |
| TAGGAGGGAAAGGGAGAGGA+GGG | + | chr5_2:46540596-46540615 | Msa0772230:intron | 55.0% | |
| CAACTGCCACAACTAGCGGT+GGG | - | chr5_2:46540977-46540996 | None:intergenic | 55.0% | |
| CACCGCTAGTTGTGGCAGTT+GGG | + | chr5_2:46540976-46540995 | Msa0772230:intron | 55.0% | |
| ACCGCTAGTTGTGGCAGTTG+GGG | + | chr5_2:46540977-46540996 | Msa0772230:intron | 55.0% | |
| TCCCCAACTGCCACAACTAG+CGG | - | chr5_2:46540981-46541000 | None:intergenic | 55.0% | |
| GGTTTAGGAGGGGAAGGGAA+GGG | - | chr5_2:46541638-46541657 | None:intergenic | 55.0% | |
| TATGCCACAGGGACAAGAGC+AGG | - | chr5_2:46542001-46542020 | None:intergenic | 55.0% | |
| GCCAGTTGCAGAAAGTGGAC+TGG | + | chr5_2:46542074-46542093 | Msa0772230:three_prime_UTR | 55.0% | |
| CGGCGAGAGAGCGAAGCTTT+GGG | - | chr5_2:46537312-46537331 | None:intergenic | 60.0% | |
| ACGGCGAGAGAGCGAAGCTT+TGG | - | chr5_2:46537313-46537332 | None:intergenic | 60.0% | |
| !! | GACCTTTAGGCGTTGGAGGG+AGG | + | chr5_2:46538784-46538803 | Msa0772230:CDS | 60.0% |
| CCAACTGCCACAACTAGCGG+TGG | - | chr5_2:46540978-46540997 | None:intergenic | 60.0% | |
| CCACCGCTAGTTGTGGCAGT+TGG | + | chr5_2:46540975-46540994 | Msa0772230:intron | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+AGG | - | chr5_2:46541639-46541658 | None:intergenic | 60.0% | |
| CAAACACAAGGGGGCTGCGA+CGG | + | chr5_2:46541800-46541819 | Msa0772230:intron | 60.0% | |
| GCCCTCCCTCCAACGCCTAA+AGG | - | chr5_2:46538789-46538808 | None:intergenic | 65.0% | |
| CACAAGGGGGCTGCGACGGA+AGG | + | chr5_2:46541804-46541823 | Msa0772230:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 46537194 | 46542367 | 46537194 | ID=Msa0772230;Name=Msa0772230 |
| chr5_2 | mRNA | 46537194 | 46542367 | 46537194 | ID=Msa0772230-mRNA-1;Parent=Msa0772230;Name=Msa0772230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=98|1|1|1|0.33|0.75|4|310|154 |
| chr5_2 | exon | 46537194 | 46537474 | 46537194 | ID=Msa0772230-mRNA-1:exon:13896;Parent=Msa0772230-mRNA-1 |
| chr5_2 | exon | 46537575 | 46537681 | 46537575 | ID=Msa0772230-mRNA-1:exon:13897;Parent=Msa0772230-mRNA-1 |
| chr5_2 | exon | 46538748 | 46538832 | 46538748 | ID=Msa0772230-mRNA-1:exon:13898;Parent=Msa0772230-mRNA-1 |
| chr5_2 | exon | 46541968 | 46542367 | 46541968 | ID=Msa0772230-mRNA-1:exon:13899;Parent=Msa0772230-mRNA-1 |
| chr5_2 | five_prime_UTR | 46537194 | 46537291 | 46537194 | ID=Msa0772230-mRNA-1:five_prime_utr;Parent=Msa0772230-mRNA-1 |
| chr5_2 | CDS | 46537292 | 46537474 | 46537292 | ID=Msa0772230-mRNA-1:cds;Parent=Msa0772230-mRNA-1 |
| chr5_2 | CDS | 46537575 | 46537681 | 46537575 | ID=Msa0772230-mRNA-1:cds;Parent=Msa0772230-mRNA-1 |
| chr5_2 | CDS | 46538748 | 46538832 | 46538748 | ID=Msa0772230-mRNA-1:cds;Parent=Msa0772230-mRNA-1 |
| chr5_2 | CDS | 46541968 | 46542057 | 46541968 | ID=Msa0772230-mRNA-1:cds;Parent=Msa0772230-mRNA-1 |
| chr5_2 | three_prime_UTR | 46542058 | 46542367 | 46542058 | ID=Msa0772230-mRNA-1:three_prime_utr;Parent=Msa0772230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
