AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092740 MtrunA17_Chr1g0209811 95.092 163 5 1 1 163 1 160 3.03e-106 300
Msa0092740 MtrunA17_Chr6g0457561 46.584 161 66 6 4 163 27 168 8.29e-35 119
Msa0092740 MtrunA17_Chr8g0391011 46.012 163 67 8 7 163 13 160 5.04e-29 104
Msa0092740 MtrunA17_Chr6g0484481 45.122 164 68 7 5 163 21 167 1.28e-25 96.3
Msa0092740 MtrunA17_Chr1g0171841 38.931 131 60 4 26 149 31 148 4.39e-13 63.2
Msa0092740 MtrunA17_Chr4g0045631 38.732 142 58 5 9 149 22 135 1.47e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092740 AT1G68490.1 59.756 164 53 6 4 163 29 183 4.03e-49 157
Msa0092740 AT1G13390.1 52.469 162 65 5 4 163 25 176 4.89e-42 138
Msa0092740 AT1G13390.2 52.469 162 65 5 4 163 25 176 4.89e-42 138
Msa0092740 AT5G16110.1 50.909 165 67 7 4 163 89 244 1.94e-35 124
Msa0092740 AT3G02555.2 46.296 162 56 5 5 163 29 162 2.16e-27 100
Msa0092740 AT3G02555.1 46.296 162 56 5 5 163 29 162 2.16e-27 100

Find 108 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCGGATTGTTACCAAAAT+TGG 0.118190 1_2:-75459919 None:intergenic
TTGCAGATTGAGGGTTAATT+TGG 0.190437 1_2:+75460264 Msa0092740:three_prime_UTR
GGATGTGTTCGGGCCAATTT+TGG 0.234336 1_2:+75459906 Msa0092740:CDS
AGCTACGGGATAAGGAATTT+TGG 0.240607 1_2:+75460091 Msa0092740:three_prime_UTR
AGACACTAGTACAAGAAATA+AGG 0.256941 1_2:-75460298 None:intergenic
TGTAAGTAGAAGAGTCATTA+GGG 0.322886 1_2:+75460348 Msa0092740:three_prime_UTR
TTGTAACTACCGGCTTAAAA+AGG 0.335635 1_2:+75460421 Msa0092740:three_prime_UTR
AGTCCGACACGGCGGGGCTT+AGG 0.339729 1_2:-75459191 None:intergenic
AGTAGCTAACCCACTAATTC+AGG 0.341828 1_2:+75459773 Msa0092740:CDS
GTCAATAGTGTCTCTTGTTT+AGG 0.345549 1_2:+75460209 Msa0092740:three_prime_UTR
TTGTAAGTAGAAGAGTCATT+AGG 0.348876 1_2:+75460347 Msa0092740:three_prime_UTR
CTTATCCCGTAGCTCTTATA+TGG 0.352258 1_2:-75460082 None:intergenic
TAATTCAGGATGCTCGATTC+GGG 0.363565 1_2:+75459787 Msa0092740:CDS
CCTCCCTTCCTTGCAGAAGA+TGG 0.393816 1_2:-75459885 None:intergenic
CTAATTCAGGATGCTCGATT+CGG 0.401608 1_2:+75459786 Msa0092740:CDS
CATATAAGAGCTACGGGATA+AGG 0.402512 1_2:+75460083 Msa0092740:three_prime_UTR
AGAAGGTGGCAGACCGGATG+GGG 0.404001 1_2:-75459859 None:intergenic
GTGACTAAATAATGCGGTTA+AGG 0.406349 1_2:+75460241 Msa0092740:three_prime_UTR
GAGCAGGGATGCTGCAATTA+CGG 0.410027 1_2:-75459980 None:intergenic
CGCCCCTCTCACCGTCGTCA+TGG 0.419708 1_2:+75459823 Msa0092740:CDS
GTCCGACACGGCGGGGCTTA+GGG 0.420772 1_2:-75459190 None:intergenic
TGCAGATTGAGGGTTAATTT+GGG 0.421481 1_2:+75460265 Msa0092740:three_prime_UTR
CAAGGAAGGGAGGATGTGTT+CGG 0.421741 1_2:+75459895 Msa0092740:CDS
GATCCTTCCGGTGGCATCTC+AGG 0.425952 1_2:+75459246 Msa0092740:CDS
GACACTAGTACAAGAAATAA+GGG 0.430863 1_2:-75460297 None:intergenic
CTCCCTTCCTTGCAGAAGAT+GGG 0.432493 1_2:-75459884 None:intergenic
TAGTTACAATTACAATTCAT+AGG 0.433568 1_2:-75460407 None:intergenic
GGTGGAACTGCAAGCAAGCT+TGG 0.435280 1_2:-75458411 None:intergenic
AAGGATTCGATTGCCTTGAC+AGG 0.436802 1_2:+75459952 Msa0092740:CDS
CGGTTAAGGTTGCAGATTGA+GGG 0.439951 1_2:+75460255 Msa0092740:three_prime_UTR
TAATTGCAGCATCCCTGCTC+TGG 0.448656 1_2:+75459983 Msa0092740:CDS
GCCCCTCTCACCGTCGTCAT+GGG 0.457309 1_2:+75459824 Msa0092740:CDS
GGAGAAGGTGGCAGACCGGA+TGG 0.458776 1_2:-75459861 None:intergenic
GTGGAACTGCAAGCAAGCTT+GGG 0.463428 1_2:-75458410 None:intergenic
CTCATCTGCGTCAAATCCCT+TGG 0.463633 1_2:+75459395 Msa0092740:CDS
GGTGGCAGACCGGATGGGGC+AGG 0.466438 1_2:-75459855 None:intergenic
TGCCCTAAGCCCCGCCGTGT+CGG 0.473384 1_2:+75459188 Msa0092740:CDS
CTGTTGTTCTAAGCCAGAGC+AGG 0.481278 1_2:-75459996 None:intergenic
TAGAAGAAATGAAGAGGTGC+AGG 0.484324 1_2:-75458432 None:intergenic
GAGAAGGTGGCAGACCGGAT+GGG 0.484866 1_2:-75459860 None:intergenic
ATTGAAAGAAGAAAGTAAAG+AGG 0.489519 1_2:-75458469 None:intergenic
ACTACCCGAGCAGATCCTTC+CGG 0.494170 1_2:+75459234 Msa0092740:CDS
GTGGTGGTTCCTGCCCCATC+CGG 0.495940 1_2:+75459846 Msa0092740:CDS
TTGAATCACACGGTTCAACT+TGG 0.496164 1_2:-75459371 None:intergenic
GTTGAGGAGTCCGACACGGC+GGG 0.496709 1_2:-75459198 None:intergenic
GTAGAAGAGTCATTAGGGGA+TGG 0.509141 1_2:+75460353 Msa0092740:three_prime_UTR
GCGGTTAAGGTTGCAGATTG+AGG 0.511423 1_2:+75460254 Msa0092740:three_prime_UTR
CTCACCGTCGTCATGGGTGG+TGG 0.513742 1_2:+75459830 Msa0092740:CDS
TCTGCTCGGGTAGTCGTTGA+CGG 0.526759 1_2:-75459225 None:intergenic
TGAATTGTAATTGTAACTAC+CGG 0.527904 1_2:+75460411 Msa0092740:three_prime_UTR
AATAGAATGGGTTAATATCG+TGG 0.530353 1_2:+75458230 None:intergenic
GAATTTACTGTACAAAGCTA+TGG 0.531959 1_2:-75458520 None:intergenic
CCACCCATGACGACGGTGAG+AGG 0.533000 1_2:-75459827 None:intergenic
CAAAGTTACAAACAAGAGGA+TGG 0.534199 1_2:-75460327 None:intergenic
AATCCGGCGGTGAGAGTCGA+AGG 0.545936 1_2:+75459933 Msa0092740:CDS
TCCCTTCCTTGCAGAAGATG+GGG 0.546203 1_2:-75459883 None:intergenic
AATCGAGCATCCTGAATTAG+TGG 0.550154 1_2:-75459783 None:intergenic
CAACCACCATATAAGAGCTA+CGG 0.552833 1_2:+75460076 Msa0092740:three_prime_UTR
AGTCGTTGACGGCGAAGTTG+AGG 0.554697 1_2:-75459214 None:intergenic
AACCACCATATAAGAGCTAC+GGG 0.555576 1_2:+75460077 Msa0092740:three_prime_UTR
TAATGTATGGTTAATTCATG+CGG 0.557043 1_2:-75458291 None:intergenic
CACCCATGACGACGGTGAGA+GGG 0.562391 1_2:-75459826 None:intergenic
TTGGATGTCCTAGTTTGAAG+AGG 0.567788 1_2:+75460110 Msa0092740:three_prime_UTR
AAGGAAGGGAGGATGTGTTC+GGG 0.568345 1_2:+75459896 Msa0092740:CDS
AGAAAAGAAAATTTCGACGA+AGG 0.572219 1_2:+75459138 Msa0092740:five_prime_UTR
GCCACCGGAAGGATCTGCTC+GGG 0.575084 1_2:-75459238 None:intergenic
TTGGTGAGAATTGTGTCCAA+GGG 0.586012 1_2:-75459411 None:intergenic
CTTACAAAGTTACAAACAAG+AGG 0.586457 1_2:-75460331 None:intergenic
CCTCTCACCGTCGTCATGGG+TGG 0.588491 1_2:+75459827 Msa0092740:CDS
ATCCCGTAGCTCTTATATGG+TGG 0.589075 1_2:-75460079 None:intergenic
CTTGGTGAGAATTGTGTCCA+AGG 0.590478 1_2:-75459412 None:intergenic
GCAGGATGATGATTGTGATA+CGG 0.592153 1_2:+75459686 Msa0092740:intron
AATGTATGGTTAATTCATGC+GGG 0.595664 1_2:-75458290 None:intergenic
AGTGGGTTAGCTACTCTGCT+CGG 0.596257 1_2:-75459765 None:intergenic
TGCCACCGGAAGGATCTGCT+CGG 0.596625 1_2:-75459239 None:intergenic
AGGATTCGATTGCCTTGACA+GGG 0.597575 1_2:+75459953 Msa0092740:CDS
ATAGAATGGGTTAATATCGT+GGG 0.604680 1_2:+75458231 None:intergenic
CCATCTTCTGCAAGGAAGGG+AGG 0.605126 1_2:+75459885 Msa0092740:CDS
CCCTTCCTTGCAGAAGATGG+GGG 0.610451 1_2:-75459882 None:intergenic
ACCCATGACGACGGTGAGAG+GGG 0.613698 1_2:-75459825 None:intergenic
AATCCTTCGACTCTCACCGC+CGG 0.616188 1_2:-75459936 None:intergenic
CAGTAAATTCATTCAACACA+AGG 0.616519 1_2:+75458533 Msa0092740:five_prime_UTR
TTTCGACGAAGGAAGATGAA+CGG 0.620932 1_2:+75459149 Msa0092740:exon
AATTACGGCTGTCCCTGTCA+AGG 0.629306 1_2:-75459965 None:intergenic
ATCGAGCATCCTGAATTAGT+GGG 0.630666 1_2:-75459782 None:intergenic
GGCGGCGACGAGGCTACTGG+AGG 0.632101 1_2:-75459720 None:intergenic
AAATTCACCTGAGATGCCAC+CGG 0.634810 1_2:-75459253 None:intergenic
AAGAAATGAAGAGGTGCAGG+TGG 0.635822 1_2:-75458429 None:intergenic
TAAATATAAAGCAACGAGTG+TGG 0.638706 1_2:+75458375 Msa0092740:five_prime_UTR
TCACCTGAGATGCCACCGGA+AGG 0.642394 1_2:-75459249 None:intergenic
CGAAGTTGAGGAGTCCGACA+CGG 0.647237 1_2:-75459202 None:intergenic
GGAACCACCACCCATGACGA+CGG 0.659927 1_2:-75459834 None:intergenic
GCAGATGAGTTTGAATCACA+CGG 0.662013 1_2:-75459381 None:intergenic
TGTTGTTCTAAGCCAGAGCA+GGG 0.670625 1_2:-75459995 None:intergenic
ATGATGTGATATTACGCGGG+AGG 0.672546 1_2:+75458262 Msa0092740:five_prime_UTR
ACCCGAGCAGATCCTTCCGG+TGG 0.672658 1_2:+75459237 Msa0092740:CDS
AATTCAGGATGCTCGATTCG+GGG 0.678593 1_2:+75459788 Msa0092740:CDS
TATATAGTGACTAAATAATG+CGG 0.682777 1_2:+75460235 Msa0092740:three_prime_UTR
AGTTGAGGAGTCCGACACGG+CGG 0.682882 1_2:-75459199 None:intergenic
TTGAGGAGTCCGACACGGCG+GGG 0.686362 1_2:-75459197 None:intergenic
GCGGGGCTTAGGGCAAACGA+CGG 0.692402 1_2:-75459180 None:intergenic
AAAATGATGTGATATTACGC+GGG 0.699449 1_2:+75458259 Msa0092740:five_prime_UTR
GTAAGTAGAAGAGTCATTAG+GGG 0.703281 1_2:+75460349 Msa0092740:three_prime_UTR
CTTGGACACAATTCTCACCA+AGG 0.706031 1_2:+75459413 Msa0092740:CDS
GTATGGTTAATTCATGCGGG+CGG 0.716668 1_2:-75458287 None:intergenic
TGGTTGTAGAAGAAATGAAG+AGG 0.719069 1_2:-75458438 None:intergenic
GGGTTAGCTACTCTGCTCGG+CGG 0.725325 1_2:-75459762 None:intergenic
AAAGTAAAGAGGATGTTGTG+TGG 0.752917 1_2:-75458458 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGTTTTGTTTTAATTTTA+TGG + chr1_2:75458790-75458809 Msa0092740:intron 10.0%
!! AAATTCATATAAAATAATAG+AGG - chr1_2:75459448-75459467 None:intergenic 10.0%
!!! CTATTATTTTATATGAATTT+AGG + chr1_2:75459448-75459467 Msa0092740:intron 10.0%
!!! CTATTATTTTATATGAATTT+AGG + chr1_2:75459448-75459467 Msa0092740:intron 10.0%
!!! ATAGTTTTGTTTTAATTTTA+TGG + chr1_2:75458790-75458809 Msa0092740:intron 10.0%
!! AAATTCATATAAAATAATAG+AGG - chr1_2:75459448-75459467 None:intergenic 10.0%
!!! CTATTATTTTATATGAATTT+AGG + chr1_2:75459448-75459467 Msa0092740:intron 10.0%
!!! CTATTATTTTATATGAATTT+AGG + chr1_2:75459448-75459467 Msa0092740:intron 10.0%
!!! AAGATATTTTTAGTAATGTA+TGG - chr1_2:75458307-75458326 None:intergenic 15.0%
!! AGAAATAGAAATAGAATAAA+AGG - chr1_2:75458611-75458630 None:intergenic 15.0%
!! AAAATTTCATCATGAAAAAA+CGG - chr1_2:75458723-75458742 None:intergenic 15.0%
!!! TGTTTTATTTGTTAGTTTAA+CGG + chr1_2:75458766-75458785 Msa0092740:intron 15.0%
!!! AACGTGTTTATAATTTATTT+TGG + chr1_2:75458905-75458924 Msa0092740:intron 15.0%
!!! ATATGAATTTAGGTTAAAAT+TGG + chr1_2:75459458-75459477 Msa0092740:intron 15.0%
!!! AATTGATCTATTTTTAACAT+TGG + chr1_2:75459526-75459545 Msa0092740:intron 15.0%
!!! TTCATTTTGATTTTCTTTTA+TGG + chr1_2:75460382-75460401 Msa0092740:three_prime_UTR 15.0%
!!! TCATTTTGATTTTCTTTTAT+GGG + chr1_2:75460383-75460402 Msa0092740:three_prime_UTR 15.0%
!!! AAGATATTTTTAGTAATGTA+TGG - chr1_2:75458307-75458326 None:intergenic 15.0%
!! AGAAATAGAAATAGAATAAA+AGG - chr1_2:75458611-75458630 None:intergenic 15.0%
!! AAAATTTCATCATGAAAAAA+CGG - chr1_2:75458723-75458742 None:intergenic 15.0%
!!! TGTTTTATTTGTTAGTTTAA+CGG + chr1_2:75458766-75458785 Msa0092740:intron 15.0%
!!! AACGTGTTTATAATTTATTT+TGG + chr1_2:75458905-75458924 Msa0092740:intron 15.0%
!!! ATATGAATTTAGGTTAAAAT+TGG + chr1_2:75459458-75459477 Msa0092740:intron 15.0%
!!! AATTGATCTATTTTTAACAT+TGG + chr1_2:75459526-75459545 Msa0092740:intron 15.0%
!!! TTCATTTTGATTTTCTTTTA+TGG + chr1_2:75460382-75460401 Msa0092740:three_prime_UTR 15.0%
!!! TCATTTTGATTTTCTTTTAT+GGG + chr1_2:75460383-75460402 Msa0092740:three_prime_UTR 15.0%
!! AGAAATAGAATAAAAGGAAA+CGG - chr1_2:75458605-75458624 None:intergenic 20.0%
!! TTGAATATATGTGGAAAAAA+TGG - chr1_2:75458655-75458674 None:intergenic 20.0%
!! AGATTAAAGTTGAATATATG+TGG - chr1_2:75458664-75458683 None:intergenic 20.0%
!! CGAAAAAACAATAACAATTA+AGG + chr1_2:75458848-75458867 Msa0092740:intron 20.0%
!!! TTTTCTCTTTTAATTTGCTT+TGG + chr1_2:75459298-75459317 Msa0092740:intron 20.0%
!! TATATAGTGACTAAATAATG+CGG + chr1_2:75460235-75460254 Msa0092740:three_prime_UTR 20.0%
!! TAGTTACAATTACAATTCAT+AGG - chr1_2:75460410-75460429 None:intergenic 20.0%
!! AGAAATAGAATAAAAGGAAA+CGG - chr1_2:75458605-75458624 None:intergenic 20.0%
!! TTGAATATATGTGGAAAAAA+TGG - chr1_2:75458655-75458674 None:intergenic 20.0%
!! AGATTAAAGTTGAATATATG+TGG - chr1_2:75458664-75458683 None:intergenic 20.0%
!! CGAAAAAACAATAACAATTA+AGG + chr1_2:75458848-75458867 Msa0092740:intron 20.0%
!!! TTTTCTCTTTTAATTTGCTT+TGG + chr1_2:75459298-75459317 Msa0092740:intron 20.0%
!! TATATAGTGACTAAATAATG+CGG + chr1_2:75460235-75460254 Msa0092740:three_prime_UTR 20.0%
!! TAGTTACAATTACAATTCAT+AGG - chr1_2:75460410-75460429 None:intergenic 20.0%
! AAAAATGATGTGATATTACG+CGG + chr1_2:75458258-75458277 Msa0092740:five_prime_UTR 25.0%
! TAATGTATGGTTAATTCATG+CGG - chr1_2:75458294-75458313 None:intergenic 25.0%
! ATTGAAAGAAGAAAGTAAAG+AGG - chr1_2:75458472-75458491 None:intergenic 25.0%
!!! ATATATCTCGTTCTGAATTT+TGG + chr1_2:75459076-75459095 Msa0092740:intron 25.0%
! AATAGAGGAATTATTTACCT+TGG - chr1_2:75459433-75459452 None:intergenic 25.0%
! TGAATTGTAATTGTAACTAC+CGG + chr1_2:75460411-75460430 Msa0092740:three_prime_UTR 25.0%
!!! ACAAATTTTCCTTTTTAAGC+CGG - chr1_2:75460433-75460452 None:intergenic 25.0%
! AAAAATGATGTGATATTACG+CGG + chr1_2:75458258-75458277 Msa0092740:five_prime_UTR 25.0%
! TAATGTATGGTTAATTCATG+CGG - chr1_2:75458294-75458313 None:intergenic 25.0%
! ATTGAAAGAAGAAAGTAAAG+AGG - chr1_2:75458472-75458491 None:intergenic 25.0%
!!! ATATATCTCGTTCTGAATTT+TGG + chr1_2:75459076-75459095 Msa0092740:intron 25.0%
! AATAGAGGAATTATTTACCT+TGG - chr1_2:75459433-75459452 None:intergenic 25.0%
! TGAATTGTAATTGTAACTAC+CGG + chr1_2:75460411-75460430 Msa0092740:three_prime_UTR 25.0%
!!! ACAAATTTTCCTTTTTAAGC+CGG - chr1_2:75460433-75460452 None:intergenic 25.0%
AAAATGATGTGATATTACGC+GGG + chr1_2:75458259-75458278 Msa0092740:five_prime_UTR 30.0%
AATGTATGGTTAATTCATGC+GGG - chr1_2:75458293-75458312 None:intergenic 30.0%
TAAATATAAAGCAACGAGTG+TGG + chr1_2:75458375-75458394 Msa0092740:five_prime_UTR 30.0%
GAATTTACTGTACAAAGCTA+TGG - chr1_2:75458523-75458542 None:intergenic 30.0%
CAGTAAATTCATTCAACACA+AGG + chr1_2:75458533-75458552 Msa0092740:five_prime_UTR 30.0%
AGAAAAGAAAATTTCGACGA+AGG + chr1_2:75459138-75459157 Msa0092740:five_prime_UTR 30.0%
ACACAAAGCAATTCAACAAA+AGG - chr1_2:75459622-75459641 None:intergenic 30.0%
GACACTAGTACAAGAAATAA+GGG - chr1_2:75460300-75460319 None:intergenic 30.0%
AGACACTAGTACAAGAAATA+AGG - chr1_2:75460301-75460320 None:intergenic 30.0%
CTTACAAAGTTACAAACAAG+AGG - chr1_2:75460334-75460353 None:intergenic 30.0%
TTGTAAGTAGAAGAGTCATT+AGG + chr1_2:75460347-75460366 Msa0092740:three_prime_UTR 30.0%
TGTAAGTAGAAGAGTCATTA+GGG + chr1_2:75460348-75460367 Msa0092740:three_prime_UTR 30.0%
TATTTAGCAACTTGAATGAC+AGG + chr1_2:75460492-75460511 Msa0092740:three_prime_UTR 30.0%
AAAATGATGTGATATTACGC+GGG + chr1_2:75458259-75458278 Msa0092740:five_prime_UTR 30.0%
AATGTATGGTTAATTCATGC+GGG - chr1_2:75458293-75458312 None:intergenic 30.0%
TAAATATAAAGCAACGAGTG+TGG + chr1_2:75458375-75458394 Msa0092740:five_prime_UTR 30.0%
GAATTTACTGTACAAAGCTA+TGG - chr1_2:75458523-75458542 None:intergenic 30.0%
CAGTAAATTCATTCAACACA+AGG + chr1_2:75458533-75458552 Msa0092740:five_prime_UTR 30.0%
AGAAAAGAAAATTTCGACGA+AGG + chr1_2:75459138-75459157 Msa0092740:five_prime_UTR 30.0%
ACACAAAGCAATTCAACAAA+AGG - chr1_2:75459622-75459641 None:intergenic 30.0%
GACACTAGTACAAGAAATAA+GGG - chr1_2:75460300-75460319 None:intergenic 30.0%
AGACACTAGTACAAGAAATA+AGG - chr1_2:75460301-75460320 None:intergenic 30.0%
CTTACAAAGTTACAAACAAG+AGG - chr1_2:75460334-75460353 None:intergenic 30.0%
TTGTAAGTAGAAGAGTCATT+AGG + chr1_2:75460347-75460366 Msa0092740:three_prime_UTR 30.0%
TGTAAGTAGAAGAGTCATTA+GGG + chr1_2:75460348-75460367 Msa0092740:three_prime_UTR 30.0%
TGGTTGTAGAAGAAATGAAG+AGG - chr1_2:75458441-75458460 None:intergenic 35.0%
AAAGTAAAGAGGATGTTGTG+TGG - chr1_2:75458461-75458480 None:intergenic 35.0%
TTAAGGTGATTAGAGCTAAG+CGG + chr1_2:75458865-75458884 Msa0092740:intron 35.0%
GGAAAAATTGTAACAGCTCA+AGG - chr1_2:75458958-75458977 None:intergenic 35.0%
AGAAACGTTCATTTCATGGA+CGG - chr1_2:75458979-75458998 None:intergenic 35.0%
GATGAGAAACGTTCATTTCA+TGG - chr1_2:75458983-75459002 None:intergenic 35.0%
! ACTCTTTTCCTCTTCAAACT+AGG - chr1_2:75460121-75460140 None:intergenic 35.0%
! GTCAATAGTGTCTCTTGTTT+AGG + chr1_2:75460209-75460228 Msa0092740:three_prime_UTR 35.0%
GTGACTAAATAATGCGGTTA+AGG + chr1_2:75460241-75460260 Msa0092740:three_prime_UTR 35.0%
TTGCAGATTGAGGGTTAATT+TGG + chr1_2:75460264-75460283 Msa0092740:three_prime_UTR 35.0%
TGCAGATTGAGGGTTAATTT+GGG + chr1_2:75460265-75460284 Msa0092740:three_prime_UTR 35.0%
CAAAGTTACAAACAAGAGGA+TGG - chr1_2:75460330-75460349 None:intergenic 35.0%
GTAAGTAGAAGAGTCATTAG+GGG + chr1_2:75460349-75460368 Msa0092740:three_prime_UTR 35.0%
!! TTGTAACTACCGGCTTAAAA+AGG + chr1_2:75460421-75460440 Msa0092740:three_prime_UTR 35.0%
TGGTTGTAGAAGAAATGAAG+AGG - chr1_2:75458441-75458460 None:intergenic 35.0%
AAAGTAAAGAGGATGTTGTG+TGG - chr1_2:75458461-75458480 None:intergenic 35.0%
TTAAGGTGATTAGAGCTAAG+CGG + chr1_2:75458865-75458884 Msa0092740:intron 35.0%
GGAAAAATTGTAACAGCTCA+AGG - chr1_2:75458958-75458977 None:intergenic 35.0%
AGAAACGTTCATTTCATGGA+CGG - chr1_2:75458979-75458998 None:intergenic 35.0%
GATGAGAAACGTTCATTTCA+TGG - chr1_2:75458983-75459002 None:intergenic 35.0%
! ACTCTTTTCCTCTTCAAACT+AGG - chr1_2:75460121-75460140 None:intergenic 35.0%
! GTCAATAGTGTCTCTTGTTT+AGG + chr1_2:75460209-75460228 Msa0092740:three_prime_UTR 35.0%
GTGACTAAATAATGCGGTTA+AGG + chr1_2:75460241-75460260 Msa0092740:three_prime_UTR 35.0%
TTGCAGATTGAGGGTTAATT+TGG + chr1_2:75460264-75460283 Msa0092740:three_prime_UTR 35.0%
TGCAGATTGAGGGTTAATTT+GGG + chr1_2:75460265-75460284 Msa0092740:three_prime_UTR 35.0%
CAAAGTTACAAACAAGAGGA+TGG - chr1_2:75460330-75460349 None:intergenic 35.0%
GTAAGTAGAAGAGTCATTAG+GGG + chr1_2:75460349-75460368 Msa0092740:three_prime_UTR 35.0%
!! TTGTAACTACCGGCTTAAAA+AGG + chr1_2:75460421-75460440 Msa0092740:three_prime_UTR 35.0%
! TAGAAGAAATGAAGAGGTGC+AGG - chr1_2:75458435-75458454 None:intergenic 40.0%
AACAGCTCAAGGTTAAGATC+TGG - chr1_2:75458947-75458966 None:intergenic 40.0%
TTTCGACGAAGGAAGATGAA+CGG + chr1_2:75459149-75459168 Msa0092740:exon 40.0%
TTGAATCACACGGTTCAACT+TGG - chr1_2:75459374-75459393 None:intergenic 40.0%
GCAGATGAGTTTGAATCACA+CGG - chr1_2:75459384-75459403 None:intergenic 40.0%
TTGGTGAGAATTGTGTCCAA+GGG - chr1_2:75459414-75459433 None:intergenic 40.0%
!! GTTGTGCTTTTGTGATTTGC+AGG + chr1_2:75459668-75459687 Msa0092740:intron 40.0%
GCAGGATGATGATTGTGATA+CGG + chr1_2:75459686-75459705 Msa0092740:intron 40.0%
AGTAGCTAACCCACTAATTC+AGG + chr1_2:75459773-75459792 Msa0092740:CDS 40.0%
ATCGAGCATCCTGAATTAGT+GGG - chr1_2:75459785-75459804 None:intergenic 40.0%
AATCGAGCATCCTGAATTAG+TGG - chr1_2:75459786-75459805 None:intergenic 40.0%
CTAATTCAGGATGCTCGATT+CGG + chr1_2:75459786-75459805 Msa0092740:CDS 40.0%
TAATTCAGGATGCTCGATTC+GGG + chr1_2:75459787-75459806 Msa0092740:CDS 40.0%
!! GGCCAATTTTGGTAACAATC+CGG + chr1_2:75459917-75459936 Msa0092740:CDS 40.0%
!! CAATTTTGGTAACAATCCGG+CGG + chr1_2:75459920-75459939 Msa0092740:CDS 40.0%
CAACCACCATATAAGAGCTA+CGG + chr1_2:75460076-75460095 Msa0092740:three_prime_UTR 40.0%
AACCACCATATAAGAGCTAC+GGG + chr1_2:75460077-75460096 Msa0092740:three_prime_UTR 40.0%
CTTATCCCGTAGCTCTTATA+TGG - chr1_2:75460085-75460104 None:intergenic 40.0%
CATATAAGAGCTACGGGATA+AGG + chr1_2:75460083-75460102 Msa0092740:three_prime_UTR 40.0%
! AGCTACGGGATAAGGAATTT+TGG + chr1_2:75460091-75460110 Msa0092740:three_prime_UTR 40.0%
TTGGATGTCCTAGTTTGAAG+AGG + chr1_2:75460110-75460129 Msa0092740:three_prime_UTR 40.0%
! TAGAAGAAATGAAGAGGTGC+AGG - chr1_2:75458435-75458454 None:intergenic 40.0%
AACAGCTCAAGGTTAAGATC+TGG - chr1_2:75458947-75458966 None:intergenic 40.0%
TTTCGACGAAGGAAGATGAA+CGG + chr1_2:75459149-75459168 Msa0092740:exon 40.0%
TTGAATCACACGGTTCAACT+TGG - chr1_2:75459374-75459393 None:intergenic 40.0%
GCAGATGAGTTTGAATCACA+CGG - chr1_2:75459384-75459403 None:intergenic 40.0%
TTGGTGAGAATTGTGTCCAA+GGG - chr1_2:75459414-75459433 None:intergenic 40.0%
!! GTTGTGCTTTTGTGATTTGC+AGG + chr1_2:75459668-75459687 Msa0092740:intron 40.0%
GCAGGATGATGATTGTGATA+CGG + chr1_2:75459686-75459705 Msa0092740:intron 40.0%
AGTAGCTAACCCACTAATTC+AGG + chr1_2:75459773-75459792 Msa0092740:CDS 40.0%
ATCGAGCATCCTGAATTAGT+GGG - chr1_2:75459785-75459804 None:intergenic 40.0%
AATCGAGCATCCTGAATTAG+TGG - chr1_2:75459786-75459805 None:intergenic 40.0%
CTAATTCAGGATGCTCGATT+CGG + chr1_2:75459786-75459805 Msa0092740:CDS 40.0%
TAATTCAGGATGCTCGATTC+GGG + chr1_2:75459787-75459806 Msa0092740:CDS 40.0%
!! GGCCAATTTTGGTAACAATC+CGG + chr1_2:75459917-75459936 Msa0092740:CDS 40.0%
!! CAATTTTGGTAACAATCCGG+CGG + chr1_2:75459920-75459939 Msa0092740:CDS 40.0%
CAACCACCATATAAGAGCTA+CGG + chr1_2:75460076-75460095 Msa0092740:three_prime_UTR 40.0%
AACCACCATATAAGAGCTAC+GGG + chr1_2:75460077-75460096 Msa0092740:three_prime_UTR 40.0%
CTTATCCCGTAGCTCTTATA+TGG - chr1_2:75460085-75460104 None:intergenic 40.0%
CATATAAGAGCTACGGGATA+AGG + chr1_2:75460083-75460102 Msa0092740:three_prime_UTR 40.0%
! AGCTACGGGATAAGGAATTT+TGG + chr1_2:75460091-75460110 Msa0092740:three_prime_UTR 40.0%
TTGGATGTCCTAGTTTGAAG+AGG + chr1_2:75460110-75460129 Msa0092740:three_prime_UTR 40.0%
ATGATGTGATATTACGCGGG+AGG + chr1_2:75458262-75458281 Msa0092740:five_prime_UTR 45.0%
GTATGGTTAATTCATGCGGG+CGG - chr1_2:75458290-75458309 None:intergenic 45.0%
! AAGAAATGAAGAGGTGCAGG+TGG - chr1_2:75458432-75458451 None:intergenic 45.0%
AAATTCACCTGAGATGCCAC+CGG - chr1_2:75459256-75459275 None:intergenic 45.0%
CTTGGTGAGAATTGTGTCCA+AGG - chr1_2:75459415-75459434 None:intergenic 45.0%
CTTGGACACAATTCTCACCA+AGG + chr1_2:75459413-75459432 Msa0092740:CDS 45.0%
! AATTCAGGATGCTCGATTCG+GGG + chr1_2:75459788-75459807 Msa0092740:CDS 45.0%
CGCCGGATTGTTACCAAAAT+TGG - chr1_2:75459922-75459941 None:intergenic 45.0%
AAGGATTCGATTGCCTTGAC+AGG + chr1_2:75459952-75459971 Msa0092740:CDS 45.0%
AGGATTCGATTGCCTTGACA+GGG + chr1_2:75459953-75459972 Msa0092740:CDS 45.0%
! TGTTGTTCTAAGCCAGAGCA+GGG - chr1_2:75459998-75460017 None:intergenic 45.0%
ATCCCGTAGCTCTTATATGG+TGG - chr1_2:75460082-75460101 None:intergenic 45.0%
CGGTTAAGGTTGCAGATTGA+GGG + chr1_2:75460255-75460274 Msa0092740:three_prime_UTR 45.0%
GTAGAAGAGTCATTAGGGGA+TGG + chr1_2:75460353-75460372 Msa0092740:three_prime_UTR 45.0%
ATGATGTGATATTACGCGGG+AGG + chr1_2:75458262-75458281 Msa0092740:five_prime_UTR 45.0%
GTATGGTTAATTCATGCGGG+CGG - chr1_2:75458290-75458309 None:intergenic 45.0%
! AAGAAATGAAGAGGTGCAGG+TGG - chr1_2:75458432-75458451 None:intergenic 45.0%
AAATTCACCTGAGATGCCAC+CGG - chr1_2:75459256-75459275 None:intergenic 45.0%
CTTGGTGAGAATTGTGTCCA+AGG - chr1_2:75459415-75459434 None:intergenic 45.0%
CTTGGACACAATTCTCACCA+AGG + chr1_2:75459413-75459432 Msa0092740:CDS 45.0%
! AATTCAGGATGCTCGATTCG+GGG + chr1_2:75459788-75459807 Msa0092740:CDS 45.0%
CGCCGGATTGTTACCAAAAT+TGG - chr1_2:75459922-75459941 None:intergenic 45.0%
AAGGATTCGATTGCCTTGAC+AGG + chr1_2:75459952-75459971 Msa0092740:CDS 45.0%
AGGATTCGATTGCCTTGACA+GGG + chr1_2:75459953-75459972 Msa0092740:CDS 45.0%
! TGTTGTTCTAAGCCAGAGCA+GGG - chr1_2:75459998-75460017 None:intergenic 45.0%
ATCCCGTAGCTCTTATATGG+TGG - chr1_2:75460082-75460101 None:intergenic 45.0%
CGGTTAAGGTTGCAGATTGA+GGG + chr1_2:75460255-75460274 Msa0092740:three_prime_UTR 45.0%
GTAGAAGAGTCATTAGGGGA+TGG + chr1_2:75460353-75460372 Msa0092740:three_prime_UTR 45.0%
GTGGAACTGCAAGCAAGCTT+GGG - chr1_2:75458413-75458432 None:intergenic 50.0%
CTCATCTGCGTCAAATCCCT+TGG + chr1_2:75459395-75459414 Msa0092740:CDS 50.0%
GGAGACCCACAGAAAAATGG+GGG - chr1_2:75459744-75459763 None:intergenic 50.0%
CGGAGACCCACAGAAAAATG+GGG - chr1_2:75459745-75459764 None:intergenic 50.0%
GCGGAGACCCACAGAAAAAT+GGG - chr1_2:75459746-75459765 None:intergenic 50.0%
!! AGTGGGTTAGCTACTCTGCT+CGG - chr1_2:75459768-75459787 None:intergenic 50.0%
TCCCTTCCTTGCAGAAGATG+GGG - chr1_2:75459886-75459905 None:intergenic 50.0%
CTCCCTTCCTTGCAGAAGAT+GGG - chr1_2:75459887-75459906 None:intergenic 50.0%
CAAGGAAGGGAGGATGTGTT+CGG + chr1_2:75459895-75459914 Msa0092740:CDS 50.0%
AAGGAAGGGAGGATGTGTTC+GGG + chr1_2:75459896-75459915 Msa0092740:CDS 50.0%
! GGATGTGTTCGGGCCAATTT+TGG + chr1_2:75459906-75459925 Msa0092740:CDS 50.0%
AATTACGGCTGTCCCTGTCA+AGG - chr1_2:75459968-75459987 None:intergenic 50.0%
GAGCAGGGATGCTGCAATTA+CGG - chr1_2:75459983-75460002 None:intergenic 50.0%
TAATTGCAGCATCCCTGCTC+TGG + chr1_2:75459983-75460002 Msa0092740:CDS 50.0%
! CTGTTGTTCTAAGCCAGAGC+AGG - chr1_2:75459999-75460018 None:intergenic 50.0%
GCGGTTAAGGTTGCAGATTG+AGG + chr1_2:75460254-75460273 Msa0092740:three_prime_UTR 50.0%
GTGGAACTGCAAGCAAGCTT+GGG - chr1_2:75458413-75458432 None:intergenic 50.0%
CTCATCTGCGTCAAATCCCT+TGG + chr1_2:75459395-75459414 Msa0092740:CDS 50.0%
GGAGACCCACAGAAAAATGG+GGG - chr1_2:75459744-75459763 None:intergenic 50.0%
CGGAGACCCACAGAAAAATG+GGG - chr1_2:75459745-75459764 None:intergenic 50.0%
GCGGAGACCCACAGAAAAAT+GGG - chr1_2:75459746-75459765 None:intergenic 50.0%
!! AGTGGGTTAGCTACTCTGCT+CGG - chr1_2:75459768-75459787 None:intergenic 50.0%
TCCCTTCCTTGCAGAAGATG+GGG - chr1_2:75459886-75459905 None:intergenic 50.0%
CTCCCTTCCTTGCAGAAGAT+GGG - chr1_2:75459887-75459906 None:intergenic 50.0%
CAAGGAAGGGAGGATGTGTT+CGG + chr1_2:75459895-75459914 Msa0092740:CDS 50.0%
AAGGAAGGGAGGATGTGTTC+GGG + chr1_2:75459896-75459915 Msa0092740:CDS 50.0%
! GGATGTGTTCGGGCCAATTT+TGG + chr1_2:75459906-75459925 Msa0092740:CDS 50.0%
AATTACGGCTGTCCCTGTCA+AGG - chr1_2:75459968-75459987 None:intergenic 50.0%
GAGCAGGGATGCTGCAATTA+CGG - chr1_2:75459983-75460002 None:intergenic 50.0%
TAATTGCAGCATCCCTGCTC+TGG + chr1_2:75459983-75460002 Msa0092740:CDS 50.0%
! CTGTTGTTCTAAGCCAGAGC+AGG - chr1_2:75459999-75460018 None:intergenic 50.0%
GCGGTTAAGGTTGCAGATTG+AGG + chr1_2:75460254-75460273 Msa0092740:three_prime_UTR 50.0%
GGTGGAACTGCAAGCAAGCT+TGG - chr1_2:75458414-75458433 None:intergenic 55.0%
CGAAGTTGAGGAGTCCGACA+CGG - chr1_2:75459205-75459224 None:intergenic 55.0%
AGTCGTTGACGGCGAAGTTG+AGG - chr1_2:75459217-75459236 None:intergenic 55.0%
TCTGCTCGGGTAGTCGTTGA+CGG - chr1_2:75459228-75459247 None:intergenic 55.0%
ACTACCCGAGCAGATCCTTC+CGG + chr1_2:75459234-75459253 Msa0092740:CDS 55.0%
GACCCACAGAAAAATGGGGG+CGG - chr1_2:75459741-75459760 None:intergenic 55.0%
GGCGGAGACCCACAGAAAAA+TGG - chr1_2:75459747-75459766 None:intergenic 55.0%
CTTGCAGAAGATGGGGGAGA+AGG - chr1_2:75459879-75459898 None:intergenic 55.0%
CTTCTCCCCCATCTTCTGCA+AGG + chr1_2:75459877-75459896 Msa0092740:CDS 55.0%
TCCCCCATCTTCTGCAAGGA+AGG + chr1_2:75459881-75459900 Msa0092740:CDS 55.0%
CCCTTCCTTGCAGAAGATGG+GGG - chr1_2:75459885-75459904 None:intergenic 55.0%
CCCCCATCTTCTGCAAGGAA+GGG + chr1_2:75459882-75459901 Msa0092740:CDS 55.0%
CCTCCCTTCCTTGCAGAAGA+TGG - chr1_2:75459888-75459907 None:intergenic 55.0%
CCATCTTCTGCAAGGAAGGG+AGG + chr1_2:75459885-75459904 Msa0092740:CDS 55.0%
AATCCTTCGACTCTCACCGC+CGG - chr1_2:75459939-75459958 None:intergenic 55.0%
GGTGGAACTGCAAGCAAGCT+TGG - chr1_2:75458414-75458433 None:intergenic 55.0%
CGAAGTTGAGGAGTCCGACA+CGG - chr1_2:75459205-75459224 None:intergenic 55.0%
AGTCGTTGACGGCGAAGTTG+AGG - chr1_2:75459217-75459236 None:intergenic 55.0%
TCTGCTCGGGTAGTCGTTGA+CGG - chr1_2:75459228-75459247 None:intergenic 55.0%
ACTACCCGAGCAGATCCTTC+CGG + chr1_2:75459234-75459253 Msa0092740:CDS 55.0%
GACCCACAGAAAAATGGGGG+CGG - chr1_2:75459741-75459760 None:intergenic 55.0%
GGCGGAGACCCACAGAAAAA+TGG - chr1_2:75459747-75459766 None:intergenic 55.0%
CTTGCAGAAGATGGGGGAGA+AGG - chr1_2:75459879-75459898 None:intergenic 55.0%
CTTCTCCCCCATCTTCTGCA+AGG + chr1_2:75459877-75459896 Msa0092740:CDS 55.0%
TCCCCCATCTTCTGCAAGGA+AGG + chr1_2:75459881-75459900 Msa0092740:CDS 55.0%
CCCTTCCTTGCAGAAGATGG+GGG - chr1_2:75459885-75459904 None:intergenic 55.0%
CCCCCATCTTCTGCAAGGAA+GGG + chr1_2:75459882-75459901 Msa0092740:CDS 55.0%
CCTCCCTTCCTTGCAGAAGA+TGG - chr1_2:75459888-75459907 None:intergenic 55.0%
CCATCTTCTGCAAGGAAGGG+AGG + chr1_2:75459885-75459904 Msa0092740:CDS 55.0%
AATCCTTCGACTCTCACCGC+CGG - chr1_2:75459939-75459958 None:intergenic 55.0%
AGTTGAGGAGTCCGACACGG+CGG - chr1_2:75459202-75459221 None:intergenic 60.0%
TGCCACCGGAAGGATCTGCT+CGG - chr1_2:75459242-75459261 None:intergenic 60.0%
GATCCTTCCGGTGGCATCTC+AGG + chr1_2:75459246-75459265 Msa0092740:CDS 60.0%
TCACCTGAGATGCCACCGGA+AGG - chr1_2:75459252-75459271 None:intergenic 60.0%
!! TCGCCGCCCCCATTTTTCTG+TGG + chr1_2:75459735-75459754 Msa0092740:CDS 60.0%
!! CGCCGCCCCCATTTTTCTGT+GGG + chr1_2:75459736-75459755 Msa0092740:CDS 60.0%
!! GGGTTAGCTACTCTGCTCGG+CGG - chr1_2:75459765-75459784 None:intergenic 60.0%
ACCCATGACGACGGTGAGAG+GGG - chr1_2:75459828-75459847 None:intergenic 60.0%
CACCCATGACGACGGTGAGA+GGG - chr1_2:75459829-75459848 None:intergenic 60.0%
GGAACCACCACCCATGACGA+CGG - chr1_2:75459837-75459856 None:intergenic 60.0%
AGAAGGTGGCAGACCGGATG+GGG - chr1_2:75459862-75459881 None:intergenic 60.0%
GAGAAGGTGGCAGACCGGAT+GGG - chr1_2:75459863-75459882 None:intergenic 60.0%
GCAGAAGATGGGGGAGAAGG+TGG - chr1_2:75459876-75459895 None:intergenic 60.0%
AATCCGGCGGTGAGAGTCGA+AGG + chr1_2:75459933-75459952 Msa0092740:CDS 60.0%
AGTTGAGGAGTCCGACACGG+CGG - chr1_2:75459202-75459221 None:intergenic 60.0%
TGCCACCGGAAGGATCTGCT+CGG - chr1_2:75459242-75459261 None:intergenic 60.0%
GATCCTTCCGGTGGCATCTC+AGG + chr1_2:75459246-75459265 Msa0092740:CDS 60.0%
TCACCTGAGATGCCACCGGA+AGG - chr1_2:75459252-75459271 None:intergenic 60.0%
!! TCGCCGCCCCCATTTTTCTG+TGG + chr1_2:75459735-75459754 Msa0092740:CDS 60.0%
!! CGCCGCCCCCATTTTTCTGT+GGG + chr1_2:75459736-75459755 Msa0092740:CDS 60.0%
!! GGGTTAGCTACTCTGCTCGG+CGG - chr1_2:75459765-75459784 None:intergenic 60.0%
ACCCATGACGACGGTGAGAG+GGG - chr1_2:75459828-75459847 None:intergenic 60.0%
CACCCATGACGACGGTGAGA+GGG - chr1_2:75459829-75459848 None:intergenic 60.0%
GGAACCACCACCCATGACGA+CGG - chr1_2:75459837-75459856 None:intergenic 60.0%
AGAAGGTGGCAGACCGGATG+GGG - chr1_2:75459862-75459881 None:intergenic 60.0%
GAGAAGGTGGCAGACCGGAT+GGG - chr1_2:75459863-75459882 None:intergenic 60.0%
GCAGAAGATGGGGGAGAAGG+TGG - chr1_2:75459876-75459895 None:intergenic 60.0%
AATCCGGCGGTGAGAGTCGA+AGG + chr1_2:75459933-75459952 Msa0092740:CDS 60.0%
GCGGGGCTTAGGGCAAACGA+CGG - chr1_2:75459183-75459202 None:intergenic 65.0%
TTGAGGAGTCCGACACGGCG+GGG - chr1_2:75459200-75459219 None:intergenic 65.0%
GTTGAGGAGTCCGACACGGC+GGG - chr1_2:75459201-75459220 None:intergenic 65.0%
ACCCGAGCAGATCCTTCCGG+TGG + chr1_2:75459237-75459256 Msa0092740:CDS 65.0%
GCCACCGGAAGGATCTGCTC+GGG - chr1_2:75459241-75459260 None:intergenic 65.0%
GAAAAATGGGGGCGGCGACG+AGG - chr1_2:75459733-75459752 None:intergenic 65.0%
GCCCCTCTCACCGTCGTCAT+GGG + chr1_2:75459824-75459843 Msa0092740:CDS 65.0%
CCACCCATGACGACGGTGAG+AGG - chr1_2:75459830-75459849 None:intergenic 65.0%
CCTCTCACCGTCGTCATGGG+TGG + chr1_2:75459827-75459846 Msa0092740:CDS 65.0%
CTCACCGTCGTCATGGGTGG+TGG + chr1_2:75459830-75459849 Msa0092740:CDS 65.0%
GTGGTGGTTCCTGCCCCATC+CGG + chr1_2:75459846-75459865 Msa0092740:CDS 65.0%
GGAGAAGGTGGCAGACCGGA+TGG - chr1_2:75459864-75459883 None:intergenic 65.0%
TGGGGGAGAAGGTGGCAGAC+CGG - chr1_2:75459868-75459887 None:intergenic 65.0%
GCGGGGCTTAGGGCAAACGA+CGG - chr1_2:75459183-75459202 None:intergenic 65.0%
TTGAGGAGTCCGACACGGCG+GGG - chr1_2:75459200-75459219 None:intergenic 65.0%
GTTGAGGAGTCCGACACGGC+GGG - chr1_2:75459201-75459220 None:intergenic 65.0%
ACCCGAGCAGATCCTTCCGG+TGG + chr1_2:75459237-75459256 Msa0092740:CDS 65.0%
GCCACCGGAAGGATCTGCTC+GGG - chr1_2:75459241-75459260 None:intergenic 65.0%
GAAAAATGGGGGCGGCGACG+AGG - chr1_2:75459733-75459752 None:intergenic 65.0%
GCCCCTCTCACCGTCGTCAT+GGG + chr1_2:75459824-75459843 Msa0092740:CDS 65.0%
CCACCCATGACGACGGTGAG+AGG - chr1_2:75459830-75459849 None:intergenic 65.0%
CCTCTCACCGTCGTCATGGG+TGG + chr1_2:75459827-75459846 Msa0092740:CDS 65.0%
CTCACCGTCGTCATGGGTGG+TGG + chr1_2:75459830-75459849 Msa0092740:CDS 65.0%
GTGGTGGTTCCTGCCCCATC+CGG + chr1_2:75459846-75459865 Msa0092740:CDS 65.0%
GGAGAAGGTGGCAGACCGGA+TGG - chr1_2:75459864-75459883 None:intergenic 65.0%
TGGGGGAGAAGGTGGCAGAC+CGG - chr1_2:75459868-75459887 None:intergenic 65.0%
TGCCCTAAGCCCCGCCGTGT+CGG + chr1_2:75459188-75459207 Msa0092740:CDS 70.0%
GTCCGACACGGCGGGGCTTA+GGG - chr1_2:75459193-75459212 None:intergenic 70.0%
AGTCCGACACGGCGGGGCTT+AGG - chr1_2:75459194-75459213 None:intergenic 70.0%
CGCCCCTCTCACCGTCGTCA+TGG + chr1_2:75459823-75459842 Msa0092740:CDS 70.0%
TGCCCTAAGCCCCGCCGTGT+CGG + chr1_2:75459188-75459207 Msa0092740:CDS 70.0%
GTCCGACACGGCGGGGCTTA+GGG - chr1_2:75459193-75459212 None:intergenic 70.0%
AGTCCGACACGGCGGGGCTT+AGG - chr1_2:75459194-75459213 None:intergenic 70.0%
CGCCCCTCTCACCGTCGTCA+TGG + chr1_2:75459823-75459842 Msa0092740:CDS 70.0%
GGCGGCGACGAGGCTACTGG+AGG - chr1_2:75459723-75459742 None:intergenic 75.0%
GGTGGCAGACCGGATGGGGC+AGG - chr1_2:75459858-75459877 None:intergenic 75.0%
GGCGGCGACGAGGCTACTGG+AGG - chr1_2:75459723-75459742 None:intergenic 75.0%
GGTGGCAGACCGGATGGGGC+AGG - chr1_2:75459858-75459877 None:intergenic 75.0%
! GGGGGCGGCGACGAGGCTAC+TGG - chr1_2:75459726-75459745 None:intergenic 80.0%
! GGGGGCGGCGACGAGGCTAC+TGG - chr1_2:75459726-75459745 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 75458239 75460512 75458239 ID=Msa0092740;Name=Msa0092740
chr1_2 mRNA 75458239 75460512 75458239 ID=Msa0092740-mRNA-1;Parent=Msa0092740;Name=Msa0092740-mRNA-1;_AED=0.16;_eAED=0.16;_QI=352|1|1|1|0.66|0.5|4|502|163
chr1_2 exon 75458239 75458554 75458239 ID=Msa0092740-mRNA-1:exon:26547;Parent=Msa0092740-mRNA-1
chr1_2 exon 75459128 75459267 75459128 ID=Msa0092740-mRNA-1:exon:26548;Parent=Msa0092740-mRNA-1
chr1_2 exon 75459368 75459434 75459368 ID=Msa0092740-mRNA-1:exon:26549;Parent=Msa0092740-mRNA-1
chr1_2 exon 75459690 75460512 75459690 ID=Msa0092740-mRNA-1:exon:26550;Parent=Msa0092740-mRNA-1
chr1_2 five_prime_UTR 75458239 75458554 75458239 ID=Msa0092740-mRNA-1:five_prime_utr;Parent=Msa0092740-mRNA-1
chr1_2 five_prime_UTR 75459128 75459163 75459128 ID=Msa0092740-mRNA-1:five_prime_utr;Parent=Msa0092740-mRNA-1
chr1_2 CDS 75459164 75459267 75459164 ID=Msa0092740-mRNA-1:cds;Parent=Msa0092740-mRNA-1
chr1_2 CDS 75459368 75459434 75459368 ID=Msa0092740-mRNA-1:cds;Parent=Msa0092740-mRNA-1
chr1_2 CDS 75459690 75460010 75459690 ID=Msa0092740-mRNA-1:cds;Parent=Msa0092740-mRNA-1
chr1_2 three_prime_UTR 75460011 75460512 75460011 ID=Msa0092740-mRNA-1:three_prime_utr;Parent=Msa0092740-mRNA-1
Gene Sequence

>Msa0092740

ATGAACGGAAGAGACTCCGTCGTTTGCCCTAAGCCCCGCCGTGTCGGACTCCTCAACTTCGCCGTCAACGACTACCCGAGCAGATCCTTCCGGTGGCATCTCAGTTGCCAAGTTGAACCGTGTGATTCAAACTCATCTGCGTCAAATCCCTTGGACACAATTCTCACCAAGGATGATGATTGTGATACGGAACAATCAAGTCCTCCAGTAGCCTCGTCGCCGCCCCCATTTTTCTGTGGGTCTCCGCCGAGCAGAGTAGCTAACCCACTAATTCAGGATGCTCGATTCGGGGATGAGAATTTCTCGCCCCTCTCACCGTCGTCATGGGTGGTGGTTCCTGCCCCATCCGGTCTGCCACCTTCTCCCCCATCTTCTGCAAGGAAGGGAGGATGTGTTCGGGCCAATTTTGGTAACAATCCGGCGGTGAGAGTCGAAGGATTCGATTGCCTTGACAGGGACAGCCGTAATTGCAGCATCCCTGCTCTGGCTTAG
Protein sequence

>Msa0092740

MNGRDSVVCPKPRRVGLLNFAVNDYPSRSFRWHLSCQVEPCDSNSSASNPLDTILTKDDDCDTEQSSPPVASSPPPFFCGSPPSRVANPLIQDARFGDENFSPLSPSSWVVVPAPSGLPPSPPSSARKGGCVRANFGNNPAVRVEGFDCLDRDSRNCSIPALA*