Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772450 | XP_003611871.2 | 94.613 | 594 | 18 | 1 | 17 | 596 | 31 | 624 | 0.0 | 1165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772450 | G7KAR6 | 94.613 | 594 | 18 | 1 | 17 | 596 | 31 | 624 | 0.0 | 1165 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077340 | Msa0772450 | 0.812439 | 4.237040e-51 | -8.615850e-47 |
| Msa0674480 | Msa0772450 | 0.803404 | 3.542368e-49 | -8.615850e-47 |
| Msa0772450 | Msa0798670 | 0.906346 | 1.636989e-80 | -8.615850e-47 |
| Msa0772450 | Msa1313280 | 0.809519 | 1.817943e-50 | -8.615850e-47 |
| Msa0772450 | Msa1385180 | 0.994823 | 1.617831e-210 | -8.615850e-47 |
| Msa0772450 | Msa1405460 | 0.825026 | 5.865452e-54 | -8.615850e-47 |
| Msa0125360 | Msa0772450 | 0.842827 | 2.037996e-58 | -8.615850e-47 |
| Msa0405680 | Msa0772450 | 0.804956 | 1.684215e-49 | -8.615850e-47 |
| Msa0251620 | Msa0772450 | 0.812570 | 3.966770e-51 | -8.615850e-47 |
| Msa0529030 | Msa0772450 | 0.825162 | 5.447877e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772450 | MtrunA17_Chr5g0403231 | 94.613 | 594 | 18 | 1 | 17 | 596 | 31 | 624 | 0.0 | 1165 |
| Msa0772450 | MtrunA17_Chr8g0373901 | 66.889 | 601 | 163 | 9 | 26 | 596 | 32 | 626 | 0.0 | 786 |
| Msa0772450 | MtrunA17_Chr4g0034351 | 39.478 | 613 | 310 | 9 | 18 | 594 | 29 | 616 | 1.41e-133 | 403 |
| Msa0772450 | MtrunA17_Chr5g0399331 | 31.317 | 562 | 301 | 16 | 59 | 595 | 79 | 580 | 2.15e-73 | 245 |
| Msa0772450 | MtrunA17_Chr8g0374741 | 31.538 | 390 | 220 | 9 | 222 | 590 | 232 | 595 | 3.20e-45 | 169 |
| Msa0772450 | MtrunA17_Chr1g0153951 | 28.397 | 574 | 344 | 20 | 47 | 590 | 9 | 545 | 3.39e-40 | 154 |
| Msa0772450 | MtrunA17_Chr3g0133631 | 28.393 | 560 | 321 | 21 | 60 | 591 | 62 | 569 | 6.09e-39 | 150 |
| Msa0772450 | MtrunA17_Chr5g0402501 | 29.341 | 334 | 192 | 4 | 263 | 590 | 249 | 544 | 9.41e-38 | 147 |
| Msa0772450 | MtrunA17_Chr4g0028651 | 30.286 | 350 | 214 | 7 | 263 | 591 | 354 | 694 | 2.10e-37 | 147 |
| Msa0772450 | MtrunA17_Chr5g0435281 | 30.725 | 345 | 211 | 8 | 262 | 590 | 177 | 509 | 1.88e-36 | 142 |
| Msa0772450 | MtrunA17_Chr8g0351061 | 33.708 | 178 | 107 | 3 | 367 | 541 | 408 | 577 | 1.46e-22 | 102 |
| Msa0772450 | MtrunA17_Chr3g0115381 | 37.333 | 150 | 87 | 2 | 370 | 519 | 545 | 687 | 7.35e-21 | 97.1 |
| Msa0772450 | MtrunA17_Chr1g0163291 | 33.775 | 151 | 92 | 2 | 367 | 517 | 386 | 528 | 2.33e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772450 | AT5G66600.2 | 55.887 | 603 | 222 | 16 | 17 | 596 | 13 | 594 | 0.0 | 603 |
| Msa0772450 | AT5G66600.14 | 55.887 | 603 | 222 | 16 | 17 | 596 | 33 | 614 | 0.0 | 603 |
| Msa0772450 | AT5G66600.1 | 55.887 | 603 | 222 | 16 | 17 | 596 | 33 | 614 | 0.0 | 603 |
| Msa0772450 | AT5G66600.4 | 55.887 | 603 | 222 | 16 | 17 | 596 | 33 | 614 | 0.0 | 603 |
| Msa0772450 | AT5G66600.9 | 55.887 | 603 | 222 | 16 | 17 | 596 | 33 | 614 | 0.0 | 603 |
| Msa0772450 | AT5G66600.3 | 55.887 | 603 | 222 | 16 | 17 | 596 | 33 | 614 | 0.0 | 603 |
| Msa0772450 | AT5G66600.7 | 56.392 | 571 | 214 | 14 | 48 | 596 | 3 | 560 | 0.0 | 585 |
| Msa0772450 | AT5G66600.12 | 54.980 | 502 | 185 | 14 | 17 | 497 | 33 | 514 | 5.05e-165 | 481 |
| Msa0772450 | AT5G66600.11 | 54.980 | 502 | 185 | 14 | 17 | 497 | 33 | 514 | 5.05e-165 | 481 |
| Msa0772450 | AT5G66600.6 | 54.980 | 502 | 185 | 14 | 17 | 497 | 33 | 514 | 5.05e-165 | 481 |
| Msa0772450 | AT5G66600.13 | 54.980 | 502 | 185 | 14 | 17 | 497 | 33 | 514 | 5.05e-165 | 481 |
| Msa0772450 | AT2G23700.1 | 55.370 | 419 | 154 | 8 | 194 | 596 | 306 | 707 | 5.52e-143 | 431 |
| Msa0772450 | AT2G23700.1 | 49.650 | 143 | 67 | 4 | 17 | 156 | 25 | 165 | 7.57e-27 | 116 |
| Msa0772450 | AT5G66600.10 | 53.712 | 458 | 172 | 13 | 17 | 453 | 33 | 471 | 6.00e-142 | 421 |
| Msa0772450 | AT5G66600.8 | 53.712 | 458 | 172 | 13 | 17 | 453 | 33 | 471 | 6.00e-142 | 421 |
| Msa0772450 | AT5G66600.5 | 53.712 | 458 | 172 | 13 | 17 | 453 | 33 | 471 | 6.00e-142 | 421 |
| Msa0772450 | AT5G66600.15 | 54.225 | 426 | 164 | 11 | 48 | 453 | 3 | 417 | 1.01e-135 | 403 |
| Msa0772450 | AT3G18900.4 | 39.238 | 525 | 245 | 8 | 73 | 590 | 73 | 530 | 1.43e-102 | 321 |
| Msa0772450 | AT3G18900.6 | 40.121 | 496 | 224 | 7 | 101 | 590 | 21 | 449 | 1.49e-102 | 318 |
| Msa0772450 | AT3G18900.3 | 40.121 | 496 | 224 | 7 | 101 | 590 | 21 | 449 | 1.49e-102 | 318 |
| Msa0772450 | AT3G18900.5 | 39.238 | 525 | 245 | 8 | 73 | 590 | 68 | 525 | 2.06e-102 | 320 |
| Msa0772450 | AT1G76620.1 | 36.183 | 503 | 258 | 11 | 100 | 595 | 75 | 521 | 1.85e-85 | 276 |
| Msa0772450 | AT5G47380.5 | 30.380 | 553 | 320 | 10 | 59 | 596 | 34 | 536 | 6.73e-80 | 262 |
| Msa0772450 | AT5G47380.4 | 30.380 | 553 | 320 | 10 | 59 | 596 | 90 | 592 | 2.15e-79 | 262 |
| Msa0772450 | AT5G47380.1 | 30.380 | 553 | 320 | 10 | 59 | 596 | 90 | 592 | 4.41e-79 | 262 |
| Msa0772450 | AT1G21060.2 | 36.346 | 509 | 237 | 14 | 96 | 590 | 56 | 491 | 5.31e-78 | 256 |
| Msa0772450 | AT1G21060.1 | 36.346 | 509 | 237 | 14 | 96 | 590 | 68 | 503 | 9.38e-78 | 256 |
| Msa0772450 | AT1G43020.1 | 31.976 | 491 | 222 | 10 | 107 | 596 | 61 | 440 | 5.30e-66 | 223 |
| Msa0772450 | AT3G18900.1 | 36.659 | 431 | 200 | 7 | 73 | 497 | 73 | 436 | 2.86e-65 | 221 |
| Msa0772450 | AT5G47380.2 | 30.088 | 452 | 256 | 9 | 59 | 500 | 90 | 491 | 1.62e-55 | 196 |
| Msa0772450 | AT1G76620.2 | 33.086 | 405 | 208 | 11 | 100 | 497 | 75 | 423 | 2.22e-54 | 191 |
| Msa0772450 | AT5G47380.3 | 30.201 | 447 | 252 | 9 | 59 | 495 | 90 | 486 | 3.16e-54 | 192 |
| Msa0772450 | AT3G18900.2 | 35.492 | 386 | 176 | 7 | 73 | 452 | 73 | 391 | 3.77e-50 | 179 |
| Msa0772450 | AT3G13000.1 | 33.795 | 361 | 200 | 13 | 263 | 593 | 197 | 548 | 1.02e-46 | 173 |
| Msa0772450 | AT3G13000.3 | 33.795 | 361 | 200 | 13 | 263 | 593 | 226 | 577 | 2.03e-46 | 172 |
| Msa0772450 | AT3G13000.2 | 33.795 | 361 | 200 | 13 | 263 | 593 | 226 | 577 | 2.03e-46 | 172 |
| Msa0772450 | AT1G16750.1 | 32.055 | 365 | 199 | 12 | 262 | 590 | 176 | 527 | 7.56e-43 | 161 |
| Msa0772450 | AT5G42690.3 | 33.731 | 335 | 186 | 10 | 262 | 591 | 184 | 487 | 1.50e-39 | 151 |
| Msa0772450 | AT2G39690.1 | 28.201 | 578 | 292 | 18 | 61 | 591 | 22 | 523 | 2.20e-39 | 152 |
| Msa0772450 | AT5G42690.5 | 33.731 | 335 | 186 | 10 | 262 | 591 | 209 | 512 | 2.86e-39 | 151 |
| Msa0772450 | AT2G39690.5 | 28.374 | 578 | 292 | 19 | 61 | 591 | 22 | 524 | 3.16e-39 | 151 |
| Msa0772450 | AT5G42690.1 | 33.929 | 336 | 184 | 11 | 262 | 591 | 235 | 538 | 3.92e-39 | 151 |
| Msa0772450 | AT1G43020.3 | 31.026 | 390 | 157 | 10 | 107 | 495 | 61 | 339 | 3.96e-39 | 147 |
| Msa0772450 | AT5G42690.2 | 33.929 | 336 | 184 | 11 | 262 | 591 | 236 | 539 | 4.37e-39 | 151 |
| Msa0772450 | AT5G42690.4 | 33.929 | 336 | 184 | 11 | 262 | 591 | 236 | 539 | 4.37e-39 | 151 |
| Msa0772450 | AT2G39690.8 | 28.447 | 573 | 287 | 18 | 66 | 591 | 1 | 497 | 1.03e-38 | 149 |
| Msa0772450 | AT2G39690.4 | 28.546 | 571 | 290 | 18 | 66 | 591 | 1 | 498 | 1.43e-38 | 149 |
| Msa0772450 | AT2G39690.2 | 32.102 | 352 | 188 | 10 | 262 | 591 | 95 | 417 | 3.94e-38 | 146 |
| Msa0772450 | AT4G37080.1 | 36.052 | 233 | 132 | 4 | 366 | 590 | 372 | 595 | 2.04e-36 | 144 |
| Msa0772450 | AT4G37080.2 | 36.052 | 233 | 132 | 4 | 366 | 590 | 385 | 608 | 2.06e-36 | 144 |
| Msa0772450 | AT4G37080.3 | 36.052 | 233 | 132 | 4 | 366 | 590 | 385 | 608 | 2.06e-36 | 144 |
| Msa0772450 | AT3G12540.2 | 25.731 | 513 | 303 | 17 | 107 | 591 | 42 | 504 | 1.02e-33 | 135 |
| Msa0772450 | AT3G12540.1 | 25.000 | 564 | 337 | 19 | 60 | 591 | 62 | 571 | 1.58e-33 | 135 |
| Msa0772450 | AT5G60720.1 | 30.189 | 371 | 197 | 12 | 263 | 591 | 340 | 690 | 1.45e-32 | 133 |
| Msa0772450 | AT1G16750.2 | 31.776 | 214 | 113 | 7 | 262 | 451 | 176 | 380 | 9.65e-25 | 107 |
| Msa0772450 | AT2G39690.7 | 27.521 | 476 | 232 | 15 | 61 | 497 | 22 | 423 | 8.03e-24 | 105 |
| Msa0772450 | AT2G39690.6 | 27.521 | 476 | 233 | 16 | 61 | 497 | 22 | 424 | 1.24e-23 | 104 |
| Msa0772450 | AT4G08550.1 | 35.032 | 157 | 94 | 3 | 370 | 526 | 425 | 573 | 1.31e-21 | 99.8 |
| Msa0772450 | AT4G08550.2 | 35.032 | 157 | 94 | 3 | 370 | 526 | 479 | 627 | 1.59e-21 | 99.4 |
| Msa0772450 | AT1G43020.4 | 28.228 | 333 | 122 | 10 | 107 | 432 | 61 | 283 | 4.62e-21 | 94.4 |
| Msa0772450 | AT1G43020.5 | 28.228 | 333 | 122 | 10 | 107 | 432 | 61 | 283 | 9.72e-21 | 94.0 |
| Msa0772450 | AT1G43020.2 | 28.228 | 333 | 122 | 10 | 107 | 432 | 61 | 283 | 9.72e-21 | 94.0 |
| Msa0772450 | AT3G11920.1 | 32.768 | 177 | 111 | 4 | 367 | 541 | 413 | 583 | 3.27e-20 | 95.1 |
| Msa0772450 | AT2G39690.3 | 27.446 | 419 | 199 | 14 | 66 | 445 | 1 | 353 | 9.01e-20 | 92.0 |
| Msa0772450 | AT4G37080.4 | 37.879 | 132 | 77 | 1 | 366 | 497 | 385 | 511 | 1.65e-16 | 83.2 |
Find 116 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAGTCACTTTGCATTTC+AGG | 0.104604 | 5_2:+46800526 | None:intergenic |
| AAGAGACTCACTTGTAATTT+TGG | 0.138544 | 5_2:+46797670 | None:intergenic |
| ATGTCCTCGGAAAGTTTATT+TGG | 0.216360 | 5_2:+46797984 | None:intergenic |
| GATTTGAGTCTCCAACTATT+TGG | 0.218537 | 5_2:+46796056 | None:intergenic |
| CACTATGGACTTCACCTTTA+GGG | 0.242461 | 5_2:+46799377 | None:intergenic |
| TTGGTAGTGTTACATCTTAA+TGG | 0.249426 | 5_2:-46796316 | Msa0772450:three_prime_UTR |
| AATCCATTCAATGCACTTCT+TGG | 0.270499 | 5_2:+46796396 | None:intergenic |
| CAATTGTCATTATATTTATC+AGG | 0.281230 | 5_2:+46796195 | None:intergenic |
| AGATCTTGAAACACCCTCTT+TGG | 0.285334 | 5_2:+46796610 | None:intergenic |
| GTGATTCAGGTAGAGATTCT+AGG | 0.296325 | 5_2:+46796455 | None:intergenic |
| AGTAGCACATGATCACTTTC+AGG | 0.302446 | 5_2:-46800555 | None:intergenic |
| ATGAGGAGAAGCTAGCTTTC+TGG | 0.319002 | 5_2:-46797515 | Msa0772450:CDS |
| AATTGCGGTGTTAGAGTTAG+AGG | 0.324704 | 5_2:-46798847 | Msa0772450:CDS |
| TGTCTTAAAATGATACTTCT+TGG | 0.325120 | 5_2:-46796335 | Msa0772450:exon |
| GCACTATGGACTTCACCTTT+AGG | 0.328459 | 5_2:+46799376 | None:intergenic |
| GATTTCGTTAATGATTCTTC+TGG | 0.331571 | 5_2:+46798492 | None:intergenic |
| ACAGTTTCCTCCTTGGTAGA+TGG | 0.360682 | 5_2:+46798753 | None:intergenic |
| GCCAGCCACAGAATTGATTA+AGG | 0.361092 | 5_2:-46798871 | Msa0772450:CDS |
| AAGGCCTCAACATGATTATC+TGG | 0.362523 | 5_2:+46799998 | None:intergenic |
| GACAATCCTTTCCATGTTGA+AGG | 0.367794 | 5_2:-46797786 | Msa0772450:CDS |
| CTGATAAATATAATGACAAT+TGG | 0.377514 | 5_2:-46796194 | Msa0772450:three_prime_UTR |
| TAGCGTAGAACATTCAGTTT+TGG | 0.377719 | 5_2:+46798668 | None:intergenic |
| TCCTTAATCAATTCTGTGGC+TGG | 0.395060 | 5_2:+46798870 | None:intergenic |
| GTTAAGACCTCAGGCATAGA+AGG | 0.399795 | 5_2:+46798690 | None:intergenic |
| TCCTCATGTTCCAACTTCCC+TGG | 0.401836 | 5_2:+46797531 | None:intergenic |
| ACAACTAGAGAGAAGATTAC+AGG | 0.409737 | 5_2:-46799080 | Msa0772450:CDS |
| TCAAAGACAAAATTCAAAAC+AGG | 0.410809 | 5_2:-46796940 | Msa0772450:CDS |
| TCACACTTTGCTCTATGTTC+AGG | 0.413440 | 5_2:-46796874 | Msa0772450:CDS |
| AAAGAGGGTGTTTCAAGATC+TGG | 0.413791 | 5_2:-46796608 | Msa0772450:CDS |
| CGATTAGAAGAAGTAGATCC+AGG | 0.414544 | 5_2:-46797549 | Msa0772450:CDS |
| GCGAATGATTCAACAAGCTT+TGG | 0.415486 | 5_2:+46796520 | None:intergenic |
| TATAAAGAGAATCAGAAATC+AGG | 0.439388 | 5_2:-46797711 | Msa0772450:CDS |
| CACAGTGTACAACATTTACA+AGG | 0.441294 | 5_2:-46798524 | Msa0772450:CDS |
| AGAAGTAGATCCAGGGAAGT+TGG | 0.445141 | 5_2:-46797541 | Msa0772450:CDS |
| CCTCTTGCTTCATAGCACTA+TGG | 0.447376 | 5_2:+46799362 | None:intergenic |
| ATCATAGGATTCACCTGTCC+GGG | 0.450390 | 5_2:+46797120 | None:intergenic |
| TATCTAAAATTGAAGTTATG+TGG | 0.456390 | 5_2:+46796373 | None:intergenic |
| GAAAGGCCAGGATGTATCAT+AGG | 0.456490 | 5_2:+46797918 | None:intergenic |
| TCGAATGTCTCGCCCCGGAC+AGG | 0.456865 | 5_2:-46797133 | Msa0772450:intron |
| GAAGGACTCAAGGAGTTTAG+TGG | 0.461754 | 5_2:-46797768 | Msa0772450:CDS |
| ATTTCAACCATGGTGTTGTA+TGG | 0.465340 | 5_2:+46797744 | None:intergenic |
| AAGTTATTATTCTTGAACCT+TGG | 0.466616 | 5_2:+46797828 | None:intergenic |
| AATCCAAGAAGTGCATTGAA+TGG | 0.470825 | 5_2:-46796399 | Msa0772450:CDS |
| AGGAATAAACAAAGCCCTAA+AGG | 0.473840 | 5_2:-46799391 | Msa0772450:CDS |
| ACACCATGGTTGAAATATCA+TGG | 0.478714 | 5_2:-46797737 | Msa0772450:CDS |
| GATATGAACATCAGAGTTTG+AGG | 0.478741 | 5_2:-46798596 | Msa0772450:CDS |
| GAAAGTTTATTTGGATCCAC+TGG | 0.480761 | 5_2:+46797993 | None:intergenic |
| AAGATTACAGGATCAGTTTG+AGG | 0.483902 | 5_2:-46799068 | Msa0772450:CDS |
| CTATATGTGATATCAATCTA+CGG | 0.486343 | 5_2:+46796094 | None:intergenic |
| GGTTAGATCCACTTTAGAAA+AGG | 0.488861 | 5_2:-46799047 | Msa0772450:CDS |
| GAGTACATTCGAGCTACATT+AGG | 0.490739 | 5_2:-46796571 | Msa0772450:CDS |
| TTGCAGGCTGCATATAAAGT+TGG | 0.492936 | 5_2:-46797204 | Msa0772450:intron |
| ACAAAATTCAAAACAGGAGC+TGG | 0.493686 | 5_2:-46796934 | Msa0772450:CDS |
| TACCATCTTCATTCTATCAA+AGG | 0.495545 | 5_2:+46799979 | None:intergenic |
| CAGGCTGCATATAAAGTTGG+AGG | 0.501104 | 5_2:-46797201 | Msa0772450:CDS |
| GGCCTTTGATAGAATGAAGA+TGG | 0.505046 | 5_2:-46799981 | Msa0772450:intron |
| GTTACATCTTAATGGAGAAA+CGG | 0.506577 | 5_2:-46796308 | Msa0772450:three_prime_UTR |
| GATCATAGGATTCACCTGTC+CGG | 0.510393 | 5_2:+46797119 | None:intergenic |
| GAACTAGGAGATGAAAGGCC+AGG | 0.513380 | 5_2:+46797906 | None:intergenic |
| CATAGAGCAAAGTGTGAAAG+TGG | 0.514117 | 5_2:+46796880 | None:intergenic |
| TTGGAGATCAAGGCGATATG+TGG | 0.525849 | 5_2:-46797854 | Msa0772450:CDS |
| TTGAGTCCTTCAACATGGAA+AGG | 0.527244 | 5_2:+46797780 | None:intergenic |
| TCCACTTTAGAAAAGGCACT+TGG | 0.527701 | 5_2:-46799040 | Msa0772450:CDS |
| TCACTGACTGTGCTAAATCA+AGG | 0.543584 | 5_2:-46799411 | Msa0772450:CDS |
| CAATACAAAATACTATACTT+AGG | 0.544168 | 5_2:-46797158 | Msa0772450:CDS |
| GACAACACCTCAAGCACCAT+TGG | 0.544456 | 5_2:-46798718 | Msa0772450:CDS |
| TGAATCATTCGCAAAAGACT+CGG | 0.545921 | 5_2:-46796509 | Msa0772450:CDS |
| AAATAAACTTTCCGAGGACA+TGG | 0.552065 | 5_2:-46797982 | Msa0772450:CDS |
| AATCTCTACCTGAATCACTA+AGG | 0.553338 | 5_2:-46796450 | Msa0772450:CDS |
| TATATGTGATATCAATCTAC+GGG | 0.555405 | 5_2:+46796095 | None:intergenic |
| ACTATTTGGTTACAAAATCG+TGG | 0.556968 | 5_2:+46796070 | None:intergenic |
| TGGAAACACATCCTCATCAC+TGG | 0.559239 | 5_2:-46799020 | Msa0772450:CDS |
| ATTGTGTTGTGTTGTGATGT+CGG | 0.560275 | 5_2:-46796228 | Msa0772450:three_prime_UTR |
| GACCCTCCTATGATACATCC+TGG | 0.567538 | 5_2:-46797924 | Msa0772450:CDS |
| AATTTCCTTAATCAATTCTG+TGG | 0.567883 | 5_2:+46798866 | None:intergenic |
| GGTTACACCTTCTATGCCTG+AGG | 0.567968 | 5_2:-46798697 | Msa0772450:CDS |
| TTTCCATGTTGAAGGACTCA+AGG | 0.569447 | 5_2:-46797778 | Msa0772450:CDS |
| TCCAGGGAAGTTGGAACATG+AGG | 0.572203 | 5_2:-46797532 | Msa0772450:CDS |
| AGGCCAGGATGTATCATAGG+AGG | 0.574012 | 5_2:+46797921 | None:intergenic |
| AGAATTGATTAAGGAAATTG+CGG | 0.574659 | 5_2:-46798862 | Msa0772450:CDS |
| AAATGAAAAGATGATGCCTA+AGG | 0.576588 | 5_2:-46798990 | Msa0772450:intron |
| AATGGTGCTTGAGGTGTTGT+CGG | 0.580229 | 5_2:+46798720 | None:intergenic |
| CTATTTGGTTACAAAATCGT+GGG | 0.580677 | 5_2:+46796071 | None:intergenic |
| GATCAACATACACAATGCAT+TGG | 0.584592 | 5_2:-46797493 | Msa0772450:CDS |
| ATCAGTCTTGCTGAACATCT+CGG | 0.584693 | 5_2:-46798038 | Msa0772450:intron |
| AATAGAAAAGCCGCTCGTTG+TGG | 0.585793 | 5_2:+46797875 | None:intergenic |
| AGCTACATTAGGCGTACGAA+AGG | 0.590906 | 5_2:-46796560 | Msa0772450:CDS |
| GATTAGAAGAAGTAGATCCA+GGG | 0.599683 | 5_2:-46797548 | Msa0772450:CDS |
| GGCATAGAAGGTGTAACCAA+TGG | 0.608767 | 5_2:+46798702 | None:intergenic |
| AGAATACCGCTGGATCAGAA+TGG | 0.608826 | 5_2:+46796848 | None:intergenic |
| CCATAGTGCTATGAAGCAAG+AGG | 0.610584 | 5_2:-46799362 | Msa0772450:intron |
| TCATCATTGTCCACAACGAG+CGG | 0.614026 | 5_2:-46797885 | Msa0772450:CDS |
| AAGGCGATATGTGGAGTCCA+AGG | 0.615664 | 5_2:-46797845 | Msa0772450:CDS |
| TTTGTGTCCTAGTGGTGTCA+TGG | 0.615867 | 5_2:-46796485 | Msa0772450:CDS |
| ACTCCTTGAGTCCTTCAACA+TGG | 0.616645 | 5_2:+46797775 | None:intergenic |
| AATCCATGATATTTCAACCA+TGG | 0.619395 | 5_2:+46797734 | None:intergenic |
| ATCATGTCCATGACACCACT+AGG | 0.621315 | 5_2:+46796478 | None:intergenic |
| AGGTGTCGAATGTCTCGCCC+CGG | 0.626926 | 5_2:-46797138 | Msa0772450:CDS |
| TGGACGACAAGCATATGCAT+TGG | 0.627823 | 5_2:-46796914 | Msa0772450:CDS |
| GACTCGGATTTGTGTCCTAG+TGG | 0.642968 | 5_2:-46796493 | Msa0772450:CDS |
| ATGATGAACTAGGAGATGAA+AGG | 0.643049 | 5_2:+46797901 | None:intergenic |
| TAATCCAGATAATCATGTTG+AGG | 0.649033 | 5_2:-46800002 | Msa0772450:CDS |
| GGCCAGGATGTATCATAGGA+GGG | 0.650926 | 5_2:+46797922 | None:intergenic |
| ATTTGAATGGACCAGTGATG+AGG | 0.653122 | 5_2:+46799009 | None:intergenic |
| ACGTGCATATACACCAAAGA+GGG | 0.654488 | 5_2:-46796623 | Msa0772450:CDS |
| TTCGGCATCTCCATCTACCA+AGG | 0.656111 | 5_2:-46798763 | Msa0772450:CDS |
| GGATCCAAATAAACTTTCCG+AGG | 0.657195 | 5_2:-46797988 | Msa0772450:CDS |
| TACGTGCATATACACCAAAG+AGG | 0.657722 | 5_2:-46796624 | Msa0772450:CDS |
| AGGAAACCATTCTGATCCAG+CGG | 0.658662 | 5_2:-46796854 | Msa0772450:intron |
| AATATCTGATCATGTTCCAG+TGG | 0.666723 | 5_2:-46798009 | Msa0772450:CDS |
| GTTGTGGACAATGATGAACT+AGG | 0.667692 | 5_2:+46797891 | None:intergenic |
| TCATAGGATTCACCTGTCCG+GGG | 0.671251 | 5_2:+46797121 | None:intergenic |
| ACAGTGTACAACATTTACAA+GGG | 0.685994 | 5_2:-46798523 | Msa0772450:CDS |
| GGTGTAACCAATGGTGCTTG+AGG | 0.693133 | 5_2:+46798711 | None:intergenic |
| TAGTGGACCATACAACACCA+TGG | 0.700278 | 5_2:-46797751 | Msa0772450:CDS |
| GGCATCTCCATCTACCAAGG+AGG | 0.713209 | 5_2:-46798760 | Msa0772450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTTCTTCAAAAAAT+AGG | + | chr5_2:46797487-46797506 | None:intergenic | 10.0% |
| !!! | AATTTTATTTTTTTGGTATA+TGG | + | chr5_2:46799522-46799541 | None:intergenic | 10.0% |
| !! | TATTTCATAATGAAAAAGAA+TGG | + | chr5_2:46796664-46796683 | None:intergenic | 15.0% |
| !!! | CTATTTTCTCAAATTATTAA+CGG | - | chr5_2:46796842-46796861 | Msa0772450:intron | 15.0% |
| !!! | TTAAAAAGTTTGTTATGAAA+TGG | - | chr5_2:46796983-46797002 | Msa0772450:intron | 15.0% |
| !! | ATATAATACTTATTGACATT+TGG | - | chr5_2:46797318-46797337 | Msa0772450:CDS | 15.0% |
| !! | TTTCGATAAAAAATTATCTT+CGG | - | chr5_2:46797824-46797843 | Msa0772450:CDS | 15.0% |
| !! | AATAAAAGATGACAATAAAA+CGG | - | chr5_2:46798437-46798456 | Msa0772450:intron | 15.0% |
| !!! | TTTTGAAGGTAAAAAAATTA+AGG | - | chr5_2:46799306-46799325 | Msa0772450:intron | 15.0% |
| !! | TATATTCTTAAATATACCTG+AGG | - | chr5_2:46796405-46796424 | Msa0772450:CDS | 20.0% |
| !!! | TGTTGTTTTAAAGTAGAATT+GGG | - | chr5_2:46796436-46796455 | Msa0772450:CDS | 20.0% |
| !! | TGATAATAAAAAGAGTTGAA+GGG | - | chr5_2:46796578-46796597 | Msa0772450:CDS | 20.0% |
| !! | AAGATGATGTAAAAAACAAA+AGG | + | chr5_2:46796701-46796720 | None:intergenic | 20.0% |
| !! | ATAAGGAATGATTAACAATA+TGG | + | chr5_2:46797103-46797122 | None:intergenic | 20.0% |
| !! | AAATTAAAATTGTTGTGTGT+GGG | + | chr5_2:46797131-46797150 | None:intergenic | 20.0% |
| !!! | TATTTGTTTGAATTGGTTTT+AGG | - | chr5_2:46797159-46797178 | Msa0772450:CDS | 20.0% |
| !! | AACAAAAGAACATGATTAAA+TGG | + | chr5_2:46797345-46797364 | None:intergenic | 20.0% |
| !!! | TCTTTTATAAACATGACAAT+AGG | - | chr5_2:46798274-46798293 | Msa0772450:intron | 20.0% |
| !! | TCGTATACAGTATAAATAAA+TGG | - | chr5_2:46798463-46798482 | Msa0772450:intron | 20.0% |
| !!! | TATGTCATTTTTGTTGTTTA+AGG | - | chr5_2:46799021-46799040 | Msa0772450:CDS | 20.0% |
| !! | GCATTGGAAAAAATATTATA+GGG | + | chr5_2:46799178-46799197 | None:intergenic | 20.0% |
| !! | TGCATTGGAAAAAATATTAT+AGG | + | chr5_2:46799179-46799198 | None:intergenic | 20.0% |
| !!! | TATCTAGTTTGATTATAAGT+TGG | - | chr5_2:46799201-46799220 | Msa0772450:intron | 20.0% |
| !! | TTAACAGTTTCATCTTTAAA+TGG | + | chr5_2:46799346-46799365 | None:intergenic | 20.0% |
| !! | GTATGATATATTTGTTTGTT+TGG | - | chr5_2:46799375-46799394 | Msa0772450:CDS | 20.0% |
| !! | CAATACAAAATACTATACTT+AGG | - | chr5_2:46799447-46799466 | Msa0772450:intron | 20.0% |
| !!! | TATCTAAAATTGAAGTTATG+TGG | + | chr5_2:46800235-46800254 | None:intergenic | 20.0% |
| !!! | TTTTAGATATCTCATATCTA+AGG | - | chr5_2:46800246-46800265 | Msa0772450:intron | 20.0% |
| !! | CAATTGTCATTATATTTATC+AGG | + | chr5_2:46800413-46800432 | None:intergenic | 20.0% |
| !! | CTGATAAATATAATGACAAT+TGG | - | chr5_2:46800411-46800430 | Msa0772450:intron | 20.0% |
| !! | AAAGTGACTTGTGAAATATT+TGG | - | chr5_2:46796089-46796108 | Msa0772450:three_prime_UTR | 25.0% |
| !!! | CAATTCTACTTTAAAACAAC+AGG | + | chr5_2:46796437-46796456 | None:intergenic | 25.0% |
| !!! | CTGTTGTTTTAAAGTAGAAT+TGG | - | chr5_2:46796435-46796454 | Msa0772450:CDS | 25.0% |
| !! | CTTCAACTCTTTTTATTATC+AGG | + | chr5_2:46796579-46796598 | None:intergenic | 25.0% |
| ! | CTGATAATAAAAAGAGTTGA+AGG | - | chr5_2:46796577-46796596 | Msa0772450:CDS | 25.0% |
| ! | GATAATAAAAAGAGTTGAAG+GGG | - | chr5_2:46796579-46796598 | Msa0772450:CDS | 25.0% |
| ! | AATATGCCAAATATGAATCA+TGG | + | chr5_2:46796903-46796922 | None:intergenic | 25.0% |
| !! | TAGTTTCTGTGTTGAATTTT+TGG | + | chr5_2:46796959-46796978 | None:intergenic | 25.0% |
| ! | GAGAAAGGTAAAAAAGAAAA+AGG | + | chr5_2:46797025-46797044 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTACCTTTCTCAA+AGG | - | chr5_2:46797027-46797046 | Msa0772450:intron | 25.0% |
| ! | AATTAAAATTGTTGTGTGTG+GGG | + | chr5_2:46797130-46797149 | None:intergenic | 25.0% |
| ! | CAAATTAAAATTGTTGTGTG+TGG | + | chr5_2:46797132-46797151 | None:intergenic | 25.0% |
| !!! | TTTGAATTGGTTTTAGGATA+TGG | - | chr5_2:46797165-46797184 | Msa0772450:CDS | 25.0% |
| !!! | TTGAATTGGTTTTAGGATAT+GGG | - | chr5_2:46797166-46797185 | Msa0772450:CDS | 25.0% |
| ! | AATAAGTATTATATGACTGC+AGG | + | chr5_2:46797312-46797331 | None:intergenic | 25.0% |
| ! | GAAGCATGATTAAAATAACA+TGG | + | chr5_2:46797442-46797461 | None:intergenic | 25.0% |
| !!! | ATTTTAATCATGCTTCTTCT+TGG | - | chr5_2:46797446-46797465 | Msa0772450:intron | 25.0% |
| ! | AATTTCCTTAATCAATTCTG+TGG | + | chr5_2:46797742-46797761 | None:intergenic | 25.0% |
| ! | AGAATTGATTAAGGAAATTG+CGG | - | chr5_2:46797743-46797762 | Msa0772450:CDS | 25.0% |
| ! | ATTATTAAACTGCATTAACC+AGG | + | chr5_2:46798209-46798228 | None:intergenic | 25.0% |
| ! | AACATAGTTGCAAAGAAAAA+TGG | + | chr5_2:46798353-46798372 | None:intergenic | 25.0% |
| ! | AAGTTATTATTCTTGAACCT+TGG | + | chr5_2:46798780-46798799 | None:intergenic | 25.0% |
| ! | TATAAAGAGAATCAGAAATC+AGG | - | chr5_2:46798894-46798913 | Msa0772450:intron | 25.0% |
| ! | ATCAAACTAGATAAATGCAT+TGG | + | chr5_2:46799194-46799213 | None:intergenic | 25.0% |
| !!! | ACTCTTTTCATATTGTTTTG+TGG | + | chr5_2:46799278-46799297 | None:intergenic | 25.0% |
| !!! | AAGAGTATTTCTTCTTTTGA+AGG | - | chr5_2:46799292-46799311 | Msa0772450:intron | 25.0% |
| ! | TTTCATCTTTAAATGGCATA+AGG | + | chr5_2:46799339-46799358 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGGTATATGGAAG+TGG | + | chr5_2:46799516-46799535 | None:intergenic | 25.0% |
| ! | TCAAAGACAAAATTCAAAAC+AGG | - | chr5_2:46799665-46799684 | Msa0772450:intron | 25.0% |
| ! | TAATGAACTTGTGTACAAAT+GGG | + | chr5_2:46799790-46799809 | None:intergenic | 25.0% |
| ! | AATTCCTAGTATCTTTGTTA+TGG | + | chr5_2:46799894-46799913 | None:intergenic | 25.0% |
| ! | TAATTCTGATGAACTATGAT+AGG | - | chr5_2:46799958-46799977 | Msa0772450:intron | 25.0% |
| ! | TGTCTTAAAATGATACTTCT+TGG | - | chr5_2:46800270-46800289 | Msa0772450:intron | 25.0% |
| ! | TATATGTGATATCAATCTAC+GGG | + | chr5_2:46800513-46800532 | None:intergenic | 25.0% |
| ! | CTATATGTGATATCAATCTA+CGG | + | chr5_2:46800514-46800533 | None:intergenic | 25.0% |
| !!! | GACTCTTAGAAGCTTTTTTT+TGG | - | chr5_2:46796111-46796130 | Msa0772450:intron | 30.0% |
| GAATTGTATGTGAATAGCTA+TGG | - | chr5_2:46796227-46796246 | Msa0772450:three_prime_UTR | 30.0% | |
| GTGTGGAGAAATAAAATGTT+AGG | - | chr5_2:46796282-46796301 | Msa0772450:three_prime_UTR | 30.0% | |
| AAGAAACAAACCTGTTTGAA+CGG | + | chr5_2:46796332-46796351 | None:intergenic | 30.0% | |
| !! | TTTTGTTTGCTCTTTCTATG+TGG | - | chr5_2:46796546-46796565 | Msa0772450:CDS | 30.0% |
| TAATCCAGATAATCATGTTG+AGG | - | chr5_2:46796603-46796622 | Msa0772450:CDS | 30.0% | |
| TACCATCTTCATTCTATCAA+AGG | + | chr5_2:46796629-46796648 | None:intergenic | 30.0% | |
| ! | CAATCATATACCTTTGAGAA+AGG | + | chr5_2:46797040-46797059 | None:intergenic | 30.0% |
| ATTAAAATTGTTGTGTGTGG+GGG | + | chr5_2:46797129-46797148 | None:intergenic | 30.0% | |
| CCAATTCAAACAAATACTTG+AGG | + | chr5_2:46797155-46797174 | None:intergenic | 30.0% | |
| CCTCAAGTATTTGTTTGAAT+TGG | - | chr5_2:46797152-46797171 | Msa0772450:CDS | 30.0% | |
| ! | TTTGTTTGTCCTTTTCTGTT+TGG | - | chr5_2:46797359-46797378 | Msa0772450:intron | 30.0% |
| AAAATAGGCATAAAGCAACT+AGG | + | chr5_2:46797472-46797491 | None:intergenic | 30.0% | |
| ! | GCATCATCTTTTCATTTGAA+TGG | + | chr5_2:46797612-46797631 | None:intergenic | 30.0% |
| AAATGAAAAGATGATGCCTA+AGG | - | chr5_2:46797615-46797634 | Msa0772450:intron | 30.0% | |
| GCAACAAGTTCAATATACTT+AGG | - | chr5_2:46797640-46797659 | Msa0772450:intron | 30.0% | |
| CTATAGAGTTACATTGTTGT+AGG | - | chr5_2:46797665-46797684 | Msa0772450:intron | 30.0% | |
| ACAGTGTACAACATTTACAA+GGG | - | chr5_2:46798082-46798101 | Msa0772450:intron | 30.0% | |
| GATTTCGTTAATGATTCTTC+TGG | + | chr5_2:46798116-46798135 | None:intergenic | 30.0% | |
| ! | AAAATGATTTTCCATGAGAC+TGG | + | chr5_2:46798185-46798204 | None:intergenic | 30.0% |
| ! | TCATGGAAAATCATTTTACC+TGG | - | chr5_2:46798188-46798207 | Msa0772450:intron | 30.0% |
| AATCCATGATATTTCAACCA+TGG | + | chr5_2:46798874-46798893 | None:intergenic | 30.0% | |
| ! | AAGAGACTCACTTGTAATTT+TGG | + | chr5_2:46798938-46798957 | None:intergenic | 30.0% |
| TAGTAAAAATTTGCATGCTG+AGG | + | chr5_2:46799560-46799579 | None:intergenic | 30.0% | |
| TATAATGTAGTGACTGACAT+GGG | - | chr5_2:46799592-46799611 | Msa0772450:intron | 30.0% | |
| GTAATGAACTTGTGTACAAA+TGG | + | chr5_2:46799791-46799810 | None:intergenic | 30.0% | |
| !!! | CATCAGCTTATTTTTGTAAC+CGG | - | chr5_2:46799851-46799870 | Msa0772450:intron | 30.0% |
| TAGTCCATAACAAAGATACT+AGG | - | chr5_2:46799887-46799906 | Msa0772450:intron | 30.0% | |
| AACTCATTAGAGTTAAGCAA+AGG | + | chr5_2:46799933-46799952 | None:intergenic | 30.0% | |
| !!! | GCTTTGGTAGAAGTATTTTT+TGG | + | chr5_2:46800072-46800091 | None:intergenic | 30.0% |
| !! | TTGGTAGTGTTACATCTTAA+TGG | - | chr5_2:46800289-46800308 | Msa0772450:intron | 30.0% |
| GTTACATCTTAATGGAGAAA+CGG | - | chr5_2:46800297-46800316 | Msa0772450:intron | 30.0% | |
| CTATTTGGTTACAAAATCGT+GGG | + | chr5_2:46800537-46800556 | None:intergenic | 30.0% | |
| ACTATTTGGTTACAAAATCG+TGG | + | chr5_2:46800538-46800557 | None:intergenic | 30.0% | |
| ! | CGATTTTGTAACCAAATAGT+TGG | - | chr5_2:46800538-46800557 | Msa0772450:CDS | 30.0% |
| ! | CTCTCTACTGTGAAGTTTTT+AGG | - | chr5_2:46796159-46796178 | Msa0772450:three_prime_UTR | 35.0% |
| !!! | CTACTGTGAAGTTTTTAGGT+AGG | - | chr5_2:46796163-46796182 | Msa0772450:three_prime_UTR | 35.0% |
| !!! | TGTGAAGTTTTTAGGTAGGA+TGG | - | chr5_2:46796167-46796186 | Msa0772450:three_prime_UTR | 35.0% |
| ! | GTGAATAGCTATGGTTTTTG+TGG | - | chr5_2:46796236-46796255 | Msa0772450:three_prime_UTR | 35.0% |
| !! | TTTTTGTGGCTTTCAGGTAT+GGG | - | chr5_2:46796250-46796269 | Msa0772450:three_prime_UTR | 35.0% |
| TAGGACTTAGATTTACTCCA+AGG | - | chr5_2:46796301-46796320 | Msa0772450:three_prime_UTR | 35.0% | |
| ! | TTCTCATGTTGCTTGAATTG+AGG | - | chr5_2:46796351-46796370 | Msa0772450:CDS | 35.0% |
| ! | TGCTTGAATTGAGGTTCTTT+TGG | - | chr5_2:46796360-46796379 | Msa0772450:CDS | 35.0% |
| CTATTCCATACATACGCATT+CGG | - | chr5_2:46796734-46796753 | Msa0772450:intron | 35.0% | |
| GCACGAAAACTTTAGATTGA+AGG | - | chr5_2:46796762-46796781 | Msa0772450:intron | 35.0% | |
| !! | TTGGTGCCATGATTCATATT+TGG | - | chr5_2:46796894-46796913 | Msa0772450:CDS | 35.0% |
| ATTATGTATCATGAGTGCCA+AGG | - | chr5_2:46796929-46796948 | Msa0772450:CDS | 35.0% | |
| TTATGTATCATGAGTGCCAA+GGG | - | chr5_2:46796930-46796949 | Msa0772450:CDS | 35.0% | |
| ATTAGTCCCAACCATAATGT+TGG | - | chr5_2:46797065-46797084 | Msa0772450:intron | 35.0% | |
| TTAGTCCCAACCATAATGTT+GGG | - | chr5_2:46797066-46797085 | Msa0772450:intron | 35.0% | |
| AATGTCCCAACATTATGGTT+GGG | + | chr5_2:46797074-46797093 | None:intergenic | 35.0% | |
| TAATGTCCCAACATTATGGT+TGG | + | chr5_2:46797075-46797094 | None:intergenic | 35.0% | |
| CCATTAATGTCCCAACATTA+TGG | + | chr5_2:46797079-46797098 | None:intergenic | 35.0% | |
| CCATAATGTTGGGACATTAA+TGG | - | chr5_2:46797076-46797095 | Msa0772450:intron | 35.0% | |
| AGGAATAAACAAAGCCCTAA+AGG | - | chr5_2:46797214-46797233 | Msa0772450:intron | 35.0% | |
| TACCAGAACCTCATCATAAT+TGG | - | chr5_2:46797271-46797290 | Msa0772450:intron | 35.0% | |
| AACCAATTATGATGAGGTTC+TGG | + | chr5_2:46797276-46797295 | None:intergenic | 35.0% | |
| GAACCTCATCATAATTGGTT+TGG | - | chr5_2:46797276-46797295 | Msa0772450:intron | 35.0% | |
| TAGTTGTAGAATCTGTCACA+AGG | + | chr5_2:46797512-46797531 | None:intergenic | 35.0% | |
| ACAACTAGAGAGAAGATTAC+AGG | - | chr5_2:46797525-46797544 | Msa0772450:CDS | 35.0% | |
| AAGATTACAGGATCAGTTTG+AGG | - | chr5_2:46797537-46797556 | Msa0772450:CDS | 35.0% | |
| ! | GGTTAGATCCACTTTAGAAA+AGG | - | chr5_2:46797558-46797577 | Msa0772450:CDS | 35.0% |
| !! | ATTGAACTTGTTGCTACCTT+AGG | + | chr5_2:46797634-46797653 | None:intergenic | 35.0% |
| ! | ATCGAAAGCTTTTCTGTACA+AGG | + | chr5_2:46797811-46797830 | None:intergenic | 35.0% |
| ! | ATGTTTTACAGTTTCCTCCT+TGG | + | chr5_2:46797862-46797881 | None:intergenic | 35.0% |
| ! | TAGCGTAGAACATTCAGTTT+TGG | + | chr5_2:46797940-46797959 | None:intergenic | 35.0% |
| GATATGAACATCAGAGTTTG+AGG | - | chr5_2:46798009-46798028 | Msa0772450:CDS | 35.0% | |
| CACAGTGTACAACATTTACA+AGG | - | chr5_2:46798081-46798100 | Msa0772450:intron | 35.0% | |
| GCAACTATGTTATCAACCTA+AGG | - | chr5_2:46798362-46798381 | Msa0772450:intron | 35.0% | |
| AATATCTGATCATGTTCCAG+TGG | - | chr5_2:46798596-46798615 | Msa0772450:CDS | 35.0% | |
| GAAAGTTTATTTGGATCCAC+TGG | + | chr5_2:46798615-46798634 | None:intergenic | 35.0% | |
| ATGTCCTCGGAAAGTTTATT+TGG | + | chr5_2:46798624-46798643 | None:intergenic | 35.0% | |
| AAATAAACTTTCCGAGGACA+TGG | - | chr5_2:46798623-46798642 | Msa0772450:CDS | 35.0% | |
| ! | TATGCATTTTACCATGTCCT+CGG | + | chr5_2:46798637-46798656 | None:intergenic | 35.0% |
| ATGATGAACTAGGAGATGAA+AGG | + | chr5_2:46798707-46798726 | None:intergenic | 35.0% | |
| !! | ATTTCAACCATGGTGTTGTA+TGG | + | chr5_2:46798864-46798883 | None:intergenic | 35.0% |
| ACACCATGGTTGAAATATCA+TGG | - | chr5_2:46798868-46798887 | Msa0772450:CDS | 35.0% | |
| GATTAGAAGAAGTAGATCCA+GGG | - | chr5_2:46799057-46799076 | Msa0772450:CDS | 35.0% | |
| GATCAACATACACAATGCAT+TGG | - | chr5_2:46799112-46799131 | Msa0772450:intron | 35.0% | |
| TCTGTTCTTTGTCTTCTGAT+AGG | - | chr5_2:46799232-46799251 | Msa0772450:intron | 35.0% | |
| ! | TGTCTTCTGATAGGCATTTT+TGG | - | chr5_2:46799241-46799260 | Msa0772450:intron | 35.0% |
| !!! | TGATAGGCATTTTTGGCTTA+TGG | - | chr5_2:46799248-46799267 | Msa0772450:intron | 35.0% |
| ! | TTTGTTTGTTTGGTCTTTGC+AGG | - | chr5_2:46799385-46799404 | Msa0772450:CDS | 35.0% |
| TTTGGTATATGGAAGTGGTT+TGG | + | chr5_2:46799511-46799530 | None:intergenic | 35.0% | |
| CATGTCAGTCACTACATTAT+AGG | + | chr5_2:46799593-46799612 | None:intergenic | 35.0% | |
| CTATAATGTAGTGACTGACA+TGG | - | chr5_2:46799591-46799610 | Msa0772450:intron | 35.0% | |
| !! | AAACTTGCTTCCTTTTGTAG+TGG | - | chr5_2:46799624-46799643 | Msa0772450:intron | 35.0% |
| ACAAAATTCAAAACAGGAGC+TGG | - | chr5_2:46799671-46799690 | Msa0772450:intron | 35.0% | |
| CTTGTGTACAAATGGGAATT+AGG | + | chr5_2:46799783-46799802 | None:intergenic | 35.0% | |
| TGAATCATTCGCAAAAGACT+CGG | - | chr5_2:46800096-46800115 | Msa0772450:intron | 35.0% | |
| AATCTCTACCTGAATCACTA+AGG | - | chr5_2:46800155-46800174 | Msa0772450:intron | 35.0% | |
| ! | ACTCTTTTCCTTAGTGATTC+AGG | + | chr5_2:46800166-46800185 | None:intergenic | 35.0% |
| ! | AATCCAAGAAGTGCATTGAA+TGG | - | chr5_2:46800206-46800225 | Msa0772450:intron | 35.0% |
| AATCCATTCAATGCACTTCT+TGG | + | chr5_2:46800212-46800231 | None:intergenic | 35.0% | |
| ATTGTGTTGTGTTGTGATGT+CGG | - | chr5_2:46800377-46800396 | Msa0772450:intron | 35.0% | |
| ! | CACAAGTCACTTTGCATTTC+AGG | + | chr5_2:46796082-46796101 | None:intergenic | 40.0% |
| ! | CTATGGTTTTTGTGGCTTTC+AGG | - | chr5_2:46796244-46796263 | Msa0772450:three_prime_UTR | 40.0% |
| !! | GTTTTTGTGGCTTTCAGGTA+TGG | - | chr5_2:46796249-46796268 | Msa0772450:three_prime_UTR | 40.0% |
| AAACAACAGGTTTGAACCTC+AGG | + | chr5_2:46796424-46796443 | None:intergenic | 40.0% | |
| AAGGCCTCAACATGATTATC+TGG | + | chr5_2:46796610-46796629 | None:intergenic | 40.0% | |
| GGCCTTTGATAGAATGAAGA+TGG | - | chr5_2:46796624-46796643 | Msa0772450:CDS | 40.0% | |
| TACAACCGAATGCGTATGTA+TGG | + | chr5_2:46796742-46796761 | None:intergenic | 40.0% | |
| ! | TCAGTGTCGTGTATTTCTGT+TGG | - | chr5_2:46796875-46796894 | Msa0772450:CDS | 40.0% |
| TATGTATCATGAGTGCCAAG+GGG | - | chr5_2:46796931-46796950 | Msa0772450:CDS | 40.0% | |
| ! | TCACTGACTGTGCTAAATCA+AGG | - | chr5_2:46797194-46797213 | Msa0772450:CDS | 40.0% |
| CACTATGGACTTCACCTTTA+GGG | + | chr5_2:46797231-46797250 | None:intergenic | 40.0% | |
| GCACCAAACCAATTATGATG+AGG | + | chr5_2:46797282-46797301 | None:intergenic | 40.0% | |
| TGCAATGCACCAAACAGAAA+AGG | + | chr5_2:46797371-46797390 | None:intergenic | 40.0% | |
| !! | TCCACTTTAGAAAAGGCACT+TGG | - | chr5_2:46797565-46797584 | Msa0772450:CDS | 40.0% |
| !! | TCCAAGTGCCTTTTCTAAAG+TGG | + | chr5_2:46797569-46797588 | None:intergenic | 40.0% |
| ATTTGAATGGACCAGTGATG+AGG | + | chr5_2:46797599-46797618 | None:intergenic | 40.0% | |
| TCCTTAATCAATTCTGTGGC+TGG | + | chr5_2:46797738-46797757 | None:intergenic | 40.0% | |
| ! | AATTGCGGTGTTAGAGTTAG+AGG | - | chr5_2:46797758-46797777 | Msa0772450:CDS | 40.0% |
| !!! | TCAGTTTTGGTTAAGACCTC+AGG | + | chr5_2:46797927-46797946 | None:intergenic | 40.0% |
| TTTACCTCCATCATGGACAA+TGG | + | chr5_2:46798161-46798180 | None:intergenic | 40.0% | |
| ! | TATCAACCTAAGGCTCTAGT+TGG | - | chr5_2:46798372-46798391 | Msa0772450:intron | 40.0% |
| GTATATCCAACTAGAGCCTT+AGG | + | chr5_2:46798381-46798400 | None:intergenic | 40.0% | |
| ATCAGTCTTGCTGAACATCT+CGG | - | chr5_2:46798567-46798586 | Msa0772450:CDS | 40.0% | |
| GGATCCAAATAAACTTTCCG+AGG | - | chr5_2:46798617-46798636 | Msa0772450:CDS | 40.0% | |
| GTTGTGGACAATGATGAACT+AGG | + | chr5_2:46798717-46798736 | None:intergenic | 40.0% | |
| ! | GGCTTTTCTATTGGAGATCA+AGG | - | chr5_2:46798741-46798760 | Msa0772450:CDS | 40.0% |
| GACAATCCTTTCCATGTTGA+AGG | - | chr5_2:46798819-46798838 | Msa0772450:CDS | 40.0% | |
| TTGAGTCCTTCAACATGGAA+AGG | + | chr5_2:46798828-46798847 | None:intergenic | 40.0% | |
| TTTCCATGTTGAAGGACTCA+AGG | - | chr5_2:46798827-46798846 | Msa0772450:CDS | 40.0% | |
| CGATTAGAAGAAGTAGATCC+AGG | - | chr5_2:46799056-46799075 | Msa0772450:CDS | 40.0% | |
| TTGCAGGCTGCATATAAAGT+TGG | - | chr5_2:46799401-46799420 | Msa0772450:CDS | 40.0% | |
| ! | ATGGAAGTGGTTTGGATCAT+AGG | + | chr5_2:46799503-46799522 | None:intergenic | 40.0% |
| ACAAACGTAGCCACTACAAA+AGG | + | chr5_2:46799637-46799656 | None:intergenic | 40.0% | |
| CATAGAGCAAAGTGTGAAAG+TGG | + | chr5_2:46799728-46799747 | None:intergenic | 40.0% | |
| TCACACTTTGCTCTATGTTC+AGG | - | chr5_2:46799731-46799750 | Msa0772450:intron | 40.0% | |
| AGCTGATGTCGCAAAATTTG+TGG | + | chr5_2:46799839-46799858 | None:intergenic | 40.0% | |
| GGACTACGACACTTAAAATC+CGG | + | chr5_2:46799873-46799892 | None:intergenic | 40.0% | |
| TACGTGCATATACACCAAAG+AGG | - | chr5_2:46799981-46800000 | Msa0772450:intron | 40.0% | |
| ACGTGCATATACACCAAAGA+GGG | - | chr5_2:46799982-46800001 | Msa0772450:CDS | 40.0% | |
| AGATCTTGAAACACCCTCTT+TGG | + | chr5_2:46799998-46800017 | None:intergenic | 40.0% | |
| !! | AAAGAGGGTGTTTCAAGATC+TGG | - | chr5_2:46799997-46800016 | Msa0772450:CDS | 40.0% |
| GAGTACATTCGAGCTACATT+AGG | - | chr5_2:46800034-46800053 | Msa0772450:CDS | 40.0% | |
| GCGAATGATTCAACAAGCTT+TGG | + | chr5_2:46800088-46800107 | None:intergenic | 40.0% | |
| GTGATTCAGGTAGAGATTCT+AGG | + | chr5_2:46800153-46800172 | None:intergenic | 40.0% | |
| GGTATGGGACTTGAAAAGTG+TGG | - | chr5_2:46796265-46796284 | Msa0772450:three_prime_UTR | 45.0% | |
| !!! | GTTGAATTTTTGGCTCCCCT+TGG | + | chr5_2:46796949-46796968 | None:intergenic | 45.0% |
| GCACTATGGACTTCACCTTT+AGG | + | chr5_2:46797232-46797251 | None:intergenic | 45.0% | |
| CCTCTTGCTTCATAGCACTA+TGG | + | chr5_2:46797246-46797265 | None:intergenic | 45.0% | |
| CCATAGTGCTATGAAGCAAG+AGG | - | chr5_2:46797243-46797262 | Msa0772450:intron | 45.0% | |
| TGGCAAAAAGTCACACTCAG+AGG | + | chr5_2:46797422-46797441 | None:intergenic | 45.0% | |
| TGGAAACACATCCTCATCAC+TGG | - | chr5_2:46797585-46797604 | Msa0772450:intron | 45.0% | |
| GCCAGCCACAGAATTGATTA+AGG | - | chr5_2:46797734-46797753 | Msa0772450:CDS | 45.0% | |
| ACAGTTTCCTCCTTGGTAGA+TGG | + | chr5_2:46797855-46797874 | None:intergenic | 45.0% | |
| !! | AATGGTGCTTGAGGTGTTGT+CGG | + | chr5_2:46797888-46797907 | None:intergenic | 45.0% |
| ! | GGCATAGAAGGTGTAACCAA+TGG | + | chr5_2:46797906-46797925 | None:intergenic | 45.0% |
| GTTAAGACCTCAGGCATAGA+AGG | + | chr5_2:46797918-46797937 | None:intergenic | 45.0% | |
| GACTGGATTTACCTCCATCA+TGG | + | chr5_2:46798168-46798187 | None:intergenic | 45.0% | |
| TGGAGGTAAATCCAGTCTCA+TGG | - | chr5_2:46798171-46798190 | Msa0772450:intron | 45.0% | |
| GAAAGGCCAGGATGTATCAT+AGG | + | chr5_2:46798690-46798709 | None:intergenic | 45.0% | |
| TCATCATTGTCCACAACGAG+CGG | - | chr5_2:46798720-46798739 | Msa0772450:CDS | 45.0% | |
| AATAGAAAAGCCGCTCGTTG+TGG | + | chr5_2:46798733-46798752 | None:intergenic | 45.0% | |
| ! | ACAACGAGCGGCTTTTCTAT+TGG | - | chr5_2:46798732-46798751 | Msa0772450:CDS | 45.0% |
| TTGGAGATCAAGGCGATATG+TGG | - | chr5_2:46798751-46798770 | Msa0772450:CDS | 45.0% | |
| ACTCCTTGAGTCCTTCAACA+TGG | + | chr5_2:46798833-46798852 | None:intergenic | 45.0% | |
| GAAGGACTCAAGGAGTTTAG+TGG | - | chr5_2:46798837-46798856 | Msa0772450:CDS | 45.0% | |
| ! | TAGTGGACCATACAACACCA+TGG | - | chr5_2:46798854-46798873 | Msa0772450:CDS | 45.0% |
| AGAAGTAGATCCAGGGAAGT+TGG | - | chr5_2:46799064-46799083 | Msa0772450:CDS | 45.0% | |
| !! | ATGAGGAGAAGCTAGCTTTC+TGG | - | chr5_2:46799090-46799109 | Msa0772450:intron | 45.0% |
| CAGGCTGCATATAAAGTTGG+AGG | - | chr5_2:46799404-46799423 | Msa0772450:CDS | 45.0% | |
| ATCATAGGATTCACCTGTCC+GGG | + | chr5_2:46799488-46799507 | None:intergenic | 45.0% | |
| GATCATAGGATTCACCTGTC+CGG | + | chr5_2:46799489-46799508 | None:intergenic | 45.0% | |
| TGGACGACAAGCATATGCAT+TGG | - | chr5_2:46799691-46799710 | Msa0772450:intron | 45.0% | |
| AGGAAACCATTCTGATCCAG+CGG | - | chr5_2:46799751-46799770 | Msa0772450:intron | 45.0% | |
| AGAATACCGCTGGATCAGAA+TGG | + | chr5_2:46799760-46799779 | None:intergenic | 45.0% | |
| AGCTACATTAGGCGTACGAA+AGG | - | chr5_2:46800045-46800064 | Msa0772450:intron | 45.0% | |
| ! | TTTGTGTCCTAGTGGTGTCA+TGG | - | chr5_2:46800120-46800139 | Msa0772450:intron | 45.0% |
| ATCATGTCCATGACACCACT+AGG | + | chr5_2:46800130-46800149 | None:intergenic | 45.0% | |
| !!! | TCTTTATAATTTTATTTTTT+TGG | + | chr5_2:46799529-46799548 | None:intergenic | 5.0% |
| CTGTTTGAACGGTTGTGCCT+TGG | + | chr5_2:46796321-46796340 | None:intergenic | 50.0% | |
| CAAGGCACAACCGTTCAAAC+AGG | - | chr5_2:46796319-46796338 | Msa0772450:three_prime_UTR | 50.0% | |
| GTTGTGTGTGGGGGACTATA+AGG | + | chr5_2:46797120-46797139 | None:intergenic | 50.0% | |
| TTCGGCATCTCCATCTACCA+AGG | - | chr5_2:46797842-46797861 | Msa0772450:CDS | 50.0% | |
| GACAACACCTCAAGCACCAT+TGG | - | chr5_2:46797887-46797906 | Msa0772450:CDS | 50.0% | |
| GGTGTAACCAATGGTGCTTG+AGG | + | chr5_2:46797897-46797916 | None:intergenic | 50.0% | |
| GGTTACACCTTCTATGCCTG+AGG | - | chr5_2:46797908-46797927 | Msa0772450:CDS | 50.0% | |
| TTCGCAGCCATTGTCCATGA+TGG | - | chr5_2:46798151-46798170 | Msa0772450:intron | 50.0% | |
| GACCCTCCTATGATACATCC+TGG | - | chr5_2:46798681-46798700 | Msa0772450:CDS | 50.0% | |
| GGCCAGGATGTATCATAGGA+GGG | + | chr5_2:46798686-46798705 | None:intergenic | 50.0% | |
| AGGCCAGGATGTATCATAGG+AGG | + | chr5_2:46798687-46798706 | None:intergenic | 50.0% | |
| GAACTAGGAGATGAAAGGCC+AGG | + | chr5_2:46798702-46798721 | None:intergenic | 50.0% | |
| AAGGCGATATGTGGAGTCCA+AGG | - | chr5_2:46798760-46798779 | Msa0772450:CDS | 50.0% | |
| TCCAGGGAAGTTGGAACATG+AGG | - | chr5_2:46799073-46799092 | Msa0772450:CDS | 50.0% | |
| TCCTCATGTTCCAACTTCCC+TGG | + | chr5_2:46799077-46799096 | None:intergenic | 50.0% | |
| TCATAGGATTCACCTGTCCG+GGG | + | chr5_2:46799487-46799506 | None:intergenic | 50.0% | |
| GGGAATTAGGAGAATACCGC+TGG | + | chr5_2:46799770-46799789 | None:intergenic | 50.0% | |
| GACTCGGATTTGTGTCCTAG+TGG | - | chr5_2:46800112-46800131 | Msa0772450:intron | 50.0% | |
| GTCCACTGTCTGACACGTGT+CGG | - | chr5_2:46796788-46796807 | Msa0772450:intron | 55.0% | |
| GGCATCTCCATCTACCAAGG+AGG | - | chr5_2:46797845-46797864 | Msa0772450:CDS | 55.0% | |
| GCAGCCATTGTCCATGATGG+AGG | - | chr5_2:46798154-46798173 | Msa0772450:intron | 55.0% | |
| CACCGACACGTGTCAGACAG+TGG | + | chr5_2:46796793-46796812 | None:intergenic | 60.0% | |
| !! | AGGTGTCGAATGTCTCGCCC+CGG | - | chr5_2:46799467-46799486 | Msa0772450:intron | 60.0% |
| TCGAATGTCTCGCCCCGGAC+AGG | - | chr5_2:46799472-46799491 | Msa0772450:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 46796058 | 46800569 | 46796058 | ID=Msa0772450;Name=Msa0772450 |
| chr5_2 | mRNA | 46796058 | 46800569 | 46796058 | ID=Msa0772450-mRNA-1;Parent=Msa0772450;Name=Msa0772450-mRNA-1;_AED=0.24;_eAED=0.26;_QI=0|0.81|0.75|1|0.90|0.83|12|253|596 |
| chr5_2 | exon | 46796058 | 46796117 | 46796058 | ID=Msa0772450-mRNA-1:exon:14044;Parent=Msa0772450-mRNA-1 |
| chr5_2 | exon | 46796152 | 46796647 | 46796152 | ID=Msa0772450-mRNA-1:exon:14043;Parent=Msa0772450-mRNA-1 |
| chr5_2 | exon | 46796855 | 46796983 | 46796855 | ID=Msa0772450-mRNA-1:exon:14042;Parent=Msa0772450-mRNA-1 |
| chr5_2 | exon | 46797134 | 46797220 | 46797134 | ID=Msa0772450-mRNA-1:exon:14041;Parent=Msa0772450-mRNA-1 |
| chr5_2 | exon | 46797314 | 46797373 | 46797314 | ID=Msa0772450-mRNA-1:exon:14040;Parent=Msa0772450-mRNA-1 |
| chr5_2 | exon | 46797485 | 46797584 | 46797485 | ID=Msa0772450-mRNA-1:exon:14039;Parent=Msa0772450-mRNA-1 |
| chr5_2 | exon | 46797681 | 46798055 | 46797681 | ID=Msa0772450-mRNA-1:exon:14038;Parent=Msa0772450-mRNA-1 |
| chr5_2 | exon | 46798465 | 46798892 | 46798465 | ID=Msa0772450-mRNA-1:exon:14037;Parent=Msa0772450-mRNA-1 |
| chr5_2 | exon | 46798991 | 46799107 | 46798991 | ID=Msa0772450-mRNA-1:exon:14036;Parent=Msa0772450-mRNA-1 |
| chr5_2 | exon | 46799363 | 46799446 | 46799363 | ID=Msa0772450-mRNA-1:exon:14035;Parent=Msa0772450-mRNA-1 |
| chr5_2 | exon | 46799982 | 46800055 | 46799982 | ID=Msa0772450-mRNA-1:exon:14034;Parent=Msa0772450-mRNA-1 |
| chr5_2 | exon | 46800536 | 46800569 | 46800536 | ID=Msa0772450-mRNA-1:exon:14033;Parent=Msa0772450-mRNA-1 |
| chr5_2 | CDS | 46800536 | 46800569 | 46800536 | ID=Msa0772450-mRNA-1:cds;Parent=Msa0772450-mRNA-1 |
| chr5_2 | CDS | 46799982 | 46800055 | 46799982 | ID=Msa0772450-mRNA-1:cds;Parent=Msa0772450-mRNA-1 |
| chr5_2 | CDS | 46799363 | 46799446 | 46799363 | ID=Msa0772450-mRNA-1:cds;Parent=Msa0772450-mRNA-1 |
| chr5_2 | CDS | 46798991 | 46799107 | 46798991 | ID=Msa0772450-mRNA-1:cds;Parent=Msa0772450-mRNA-1 |
| chr5_2 | CDS | 46798465 | 46798892 | 46798465 | ID=Msa0772450-mRNA-1:cds;Parent=Msa0772450-mRNA-1 |
| chr5_2 | CDS | 46797681 | 46798055 | 46797681 | ID=Msa0772450-mRNA-1:cds;Parent=Msa0772450-mRNA-1 |
| chr5_2 | CDS | 46797485 | 46797584 | 46797485 | ID=Msa0772450-mRNA-1:cds;Parent=Msa0772450-mRNA-1 |
| chr5_2 | CDS | 46797314 | 46797373 | 46797314 | ID=Msa0772450-mRNA-1:cds;Parent=Msa0772450-mRNA-1 |
| chr5_2 | CDS | 46797134 | 46797220 | 46797134 | ID=Msa0772450-mRNA-1:cds;Parent=Msa0772450-mRNA-1 |
| chr5_2 | CDS | 46796855 | 46796983 | 46796855 | ID=Msa0772450-mRNA-1:cds;Parent=Msa0772450-mRNA-1 |
| chr5_2 | CDS | 46796345 | 46796647 | 46796345 | ID=Msa0772450-mRNA-1:cds;Parent=Msa0772450-mRNA-1 |
| chr5_2 | three_prime_UTR | 46796152 | 46796344 | 46796152 | ID=Msa0772450-mRNA-1:three_prime_utr;Parent=Msa0772450-mRNA-1 |
| chr5_2 | three_prime_UTR | 46796058 | 46796117 | 46796058 | ID=Msa0772450-mRNA-1:three_prime_utr;Parent=Msa0772450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
