AlfalfaGEDB | Msa0251620

M. sativa cultivar zhongmu-4 / Msa0251620

KEGG: -
GO: -
PFAM: PF04788.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0251620	XP_013452074.1	99.225	387	3	0	1	387	1	387	0.0	803

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0251620	A0A072U8X6	99.225	387	3	0	1	387	1	387	0.0	803

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002580	Msa0251620	0.804084	2.560080e-49	-8.615850e-47
Msa0034210	Msa0251620	0.810593	1.067142e-50	-8.615850e-47
Msa0108880	Msa0251620	0.801778	7.670060e-49	-8.615850e-47
Msa0117480	Msa0251620	0.800496	1.402247e-48	-8.615850e-47
Msa0128310	Msa0251620	0.819257	1.276965e-52	-8.615850e-47
Msa0136650	Msa0251620	0.802680	5.001741e-49	-8.615850e-47
Msa0174440	Msa0251620	0.803164	3.973217e-49	-8.615850e-47
Msa0251620	Msa0380620	0.816033	6.812965e-52	-8.615850e-47
Msa0251620	Msa0430260	0.818239	2.174384e-52	-8.615850e-47
Msa0251620	Msa0436910	0.808500	3.004734e-50	-8.615850e-47

Showing 1 to 10 of 28 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0251620	MtrunA17_Chr2g0309941	99.225	387	3	0	1	387	1	387	0.0	803
Msa0251620	MtrunA17_Chr1g0152841	54.743	369	151	4	15	380	65	420	1.92e-142	413
Msa0251620	MtrunA17_Chr1g0207581	54.223	367	150	4	15	380	72	421	1.57e-139	405
Msa0251620	MtrunA17_Chr3g0134521	57.947	302	121	4	81	380	93	390	3.18e-124	364
Msa0251620	MtrunA17_Chr1g0176101	47.411	367	167	7	17	380	4	347	2.30e-112	332
Msa0251620	MtrunA17_Chr3g0112781	43.229	384	186	7	17	380	14	385	5.40e-105	317
Msa0251620	MtrunA17_Chr5g0436191	42.049	371	197	5	17	380	14	373	1.58e-96	294
Msa0251620	MtrunA17_Chr1g0154851	41.144	367	198	8	17	380	14	365	2.55e-87	269
Msa0251620	MtrunA17_Chr5g0403841	39.782	367	204	9	17	380	23	375	9.49e-84	260
Msa0251620	MtrunA17_Chr3g0141481	39.402	368	203	8	17	379	21	373	6.43e-82	255

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0251620	AT1G79420.1	69.042	407	101	10	1	385	1	404	0.0	548
Msa0251620	AT1G49840.1	53.825	366	158	5	17	380	86	442	7.44e-139	405
Msa0251620	AT3G19540.1	55.786	337	138	5	45	380	108	434	1.72e-135	396
Msa0251620	AT1G27690.1	51.771	367	168	6	17	380	49	409	8.55e-129	377
Msa0251620	AT5G05840.1	44.772	373	197	3	17	380	14	386	1.62e-108	326
Msa0251620	AT5G06610.1	47.340	376	161	11	15	380	2	350	4.87e-103	309
Msa0251620	AT5G66740.1	44.444	369	184	9	17	380	14	366	9.20e-92	280
Msa0251620	AT3G55720.1	39.164	383	208	9	17	380	14	390	5.32e-83	260
Msa0251620	AT1G75160.1	39.529	382	207	9	17	380	16	391	7.60e-80	251

Showing 1 to 9 of 9 entries

Previous1Next

Find 126 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTTGCTTTGTACTT+TGG	0.478913	2_2:+41466819	Msa0251620:CDS
AAACATGTATGCAACTGGGG+TGG	0.744117	2_2:+41466724	Msa0251620:CDS
AAAGCAGGATCATGATCTGA+TGG	0.591942	2_2:-41465975	None:intergenic
AAAGCTCTTGGGAAGCTATA+AGG	0.275008	2_2:+41465820	Msa0251620:CDS
AAATCGAAACACGGTCGCGA+TGG	0.580090	2_2:-41469023	None:intergenic
AAATGATCCATGGAGAGTCC+AGG	0.573862	2_2:-41469121	None:intergenic
AAGAAAGTGATGCAGTTTAT+TGG	0.231313	2_2:+41468927	Msa0251620:CDS
AAGAAGTGAGGGACCCGCAG+AGG	0.611234	2_2:+41468814	Msa0251620:CDS
AAGATTGTTGCTGGTAGTAA+TGG	0.516674	2_2:+41466890	Msa0251620:CDS
AAGCTCTTGGGAAGCTATAA+GGG	0.396989	2_2:+41465821	Msa0251620:CDS

Showing 1 to 10 of 126 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGATGATTGTGTTATGAGAA+TGG	-	chr2_2:41465665-41465684	None:intergenic	30.0%
TTGTGATGAATACTTAAAGC+AGG	-	chr2_2:41465993-41466012	None:intergenic	30.0%
ATAGAAATGCATGTTTCGAT+TGG	+	chr2_2:41466188-41466207	Msa0251620:intron	30.0%
TAGAAATGCATGTTTCGATT+GGG	+	chr2_2:41466189-41466208	Msa0251620:intron	30.0%
TAAAAACATGTATGCAACTG+GGG	+	chr2_2:41466721-41466740	Msa0251620:CDS	30.0%
TTACTTAAAAATGTGATCGG+AGG	-	chr2_2:41467019-41467038	None:intergenic	30.0%
GAAAATCACATCAAGTAATG+TGG	+	chr2_2:41467228-41467247	Msa0251620:intron	30.0%
TAATGTCGCGTCTTTATATT+AGG	+	chr2_2:41467302-41467321	Msa0251620:intron	30.0%
ACGTTTGTAGTGTAAAGTAA+GGG	-	chr2_2:41467913-41467932	None:intergenic	30.0%
AAGGATAATTCATTCTTCAG+GGG	-	chr2_2:41468065-41468084	None:intergenic	30.0%

Showing 1 to 10 of 261 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	41465607	41469449	41465607	ID=Msa0251620;Name=Msa0251620
chr2_2	mRNA	41465607	41469449	41465607	ID=Msa0251620-mRNA-1;Parent=Msa0251620;Name=Msa0251620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=107\|1\|1\|1\|1\|1\|3\|263\|387
chr2_2	exon	41465607	41466034	41465607	ID=Msa0251620-mRNA-1:exon:13046;Parent=Msa0251620-mRNA-1
chr2_2	exon	41466647	41466994	41466647	ID=Msa0251620-mRNA-1:exon:13047;Parent=Msa0251620-mRNA-1
chr2_2	exon	41468692	41469449	41468692	ID=Msa0251620-mRNA-1:exon:13048;Parent=Msa0251620-mRNA-1
chr2_2	five_prime_UTR	41465607	41465713	41465607	ID=Msa0251620-mRNA-1:five_prime_utr;Parent=Msa0251620-mRNA-1
chr2_2	CDS	41465714	41466034	41465714	ID=Msa0251620-mRNA-1:cds;Parent=Msa0251620-mRNA-1
chr2_2	CDS	41466647	41466994	41466647	ID=Msa0251620-mRNA-1:cds;Parent=Msa0251620-mRNA-1
chr2_2	CDS	41468692	41469186	41468692	ID=Msa0251620-mRNA-1:cds;Parent=Msa0251620-mRNA-1
chr2_2	three_prime_UTR	41469187	41469449	41469187	ID=Msa0251620-mRNA-1:three_prime_utr;Parent=Msa0251620-mRNA-1

Gene Sequence

>Msa0251620

ATGGCTTCAAGATCAGCACGTTGGCGCCAAAGTTGGGCACCACAGCCATTAACACCATTGATGGAAGGTCCTGACCCTGAAATGCAAGAAGAAGGAGGCAAAAAAGAAAGCTCTTGGGAAGCTATAAGGGAATGGTTCAAAGCTCAGAAAATTTCACCTAGTGGCAACATTTCATCACAATCATTTTATGGAACCATTGATGCTAAGACACAAGATTTGAGGTTATTGCTTGGTGTCTTAGGTTGTCCCTTGGCTCCTATTCCATCAGATCATGATCCTGCTTTAAGTATTCATCACAATCACATCAAAGATACCCCATTTGAAACATCAACAGCCAAGTACATCATACAACAATATTTAGCTGCAACAGGATGTTTGAAACAACAAAAGGAGAATAAAAACATGTATGCAACTGGGGTGGTGAAGATGATTTGTTGTGAAACGGAGATATCATCAGGGAAGAATGTAAAGTGTTTGGGGACAAGAAGTAGTGAAAATGGTTGCTTTGTACTTTGGCAAATGTTGCCAGGAATGTGGTCTCTTGAATTGGTTGTTGGTGGCCATAAGATTGTTGCTGGTAGTAATGGTAAGACTGTGTGGAGACATACCCCTTGGTTAGGTACTCATGCTGCTAAAGGCCCACAACGCCCATTACGTCGCATTATTCAGGGTTTGGATCCAAAGAGCACAGCAAGTTTATTCACAAATGCACAATGCTTAGGTGAAAATCGAATCGGAAACGTTGATTGCTTCGTGTTAAAGGTATGTGCAGATCGTGAGACTGTGATAGAAAGAAGTGAGGGACCCGCAGAGGTAATAAGGCACATTCTATATGGCTACTTTTGCCAAAAAAGTGGACTCCTCATATACCTAGAAGACTCACATCTCACTAGGGTTCCAACACAAGAAAGTGATGCAGTTTATTGGGAGACCACAATAGGTAGTAGCATTGGTGATTATCGAGACGTTGATGGGATCTTGATTGCACATCAAGGACGGTCCATCGCGACCGTGTTTCGATTTGGTGAACTCTCAATGCAGCATAGTAGAACCAGAATGGAGGAGATTTGGACCATTGATGATGTTATGTTTAATGTACCTGGACTCTCCATGGATCATTTCATTCCTCCTGCTGATATTCTTGACAATATAAATTCTCCATGA

Protein sequence

>Msa0251620

MASRSARWRQSWAPQPLTPLMEGPDPEMQEEGGKKESSWEAIREWFKAQKISPSGNISSQSFYGTIDAKTQDLRLLLGVLGCPLAPIPSDHDPALSIHHNHIKDTPFETSTAKYIIQQYLAATGCLKQQKENKNMYATGVVKMICCETEISSGKNVKCLGTRSSENGCFVLWQMLPGMWSLELVVGGHKIVAGSNGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKSTASLFTNAQCLGENRIGNVDCFVLKVCADRETVIERSEGPAEVIRHILYGYFCQKSGLLIYLEDSHLTRVPTQESDAVYWETTIGSSIGDYRDVDGILIAHQGRSIATVFRFGELSMQHSRTRMEEIWTIDDVMFNVPGLSMDHFIPPADILDNINSP*