Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385180 | XP_003611871.2 | 94.551 | 624 | 20 | 1 | 13 | 622 | 1 | 624 | 0.0 | 1222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385180 | G7KAR6 | 94.551 | 624 | 20 | 1 | 13 | 622 | 1 | 624 | 0.0 | 1222 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077340 | Msa1385180 | 0.818395 | 2.005048e-52 | -8.615850e-47 |
| Msa1385180 | Msa1405460 | 0.826981 | 2.012250e-54 | -8.615850e-47 |
| Msa0674480 | Msa1385180 | 0.805271 | 1.447117e-49 | -8.615850e-47 |
| Msa0772450 | Msa1385180 | 0.994823 | 1.617831e-210 | -8.615850e-47 |
| Msa0798670 | Msa1385180 | 0.903350 | 3.798101e-79 | -8.615850e-47 |
| Msa0125360 | Msa1385180 | 0.844306 | 8.201550e-59 | -8.615850e-47 |
| Msa1232700 | Msa1385180 | 0.806397 | 8.392170e-50 | -8.615850e-47 |
| Msa1313280 | Msa1385180 | 0.809693 | 1.667855e-50 | -8.615850e-47 |
| Msa0405680 | Msa1385180 | 0.802435 | 5.616905e-49 | -8.615850e-47 |
| Msa0251620 | Msa1385180 | 0.802682 | 4.995717e-49 | -8.615850e-47 |
| Msa0529030 | Msa1385180 | 0.826500 | 2.622003e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385180 | MtrunA17_Chr5g0403231 | 94.551 | 624 | 20 | 1 | 13 | 622 | 1 | 624 | 0.0 | 1222 |
| Msa1385180 | MtrunA17_Chr8g0373901 | 66.190 | 630 | 174 | 12 | 24 | 622 | 5 | 626 | 0.0 | 804 |
| Msa1385180 | MtrunA17_Chr4g0034351 | 39.840 | 625 | 314 | 10 | 32 | 620 | 18 | 616 | 1.63e-135 | 409 |
| Msa1385180 | MtrunA17_Chr5g0399331 | 31.317 | 562 | 301 | 16 | 85 | 621 | 79 | 580 | 2.56e-73 | 246 |
| Msa1385180 | MtrunA17_Chr8g0374741 | 31.956 | 363 | 202 | 8 | 273 | 616 | 259 | 595 | 2.54e-45 | 170 |
| Msa1385180 | MtrunA17_Chr1g0153951 | 28.397 | 574 | 344 | 20 | 73 | 616 | 9 | 545 | 3.75e-40 | 154 |
| Msa1385180 | MtrunA17_Chr3g0133631 | 28.393 | 560 | 321 | 21 | 86 | 617 | 62 | 569 | 8.95e-39 | 150 |
| Msa1385180 | MtrunA17_Chr5g0402501 | 29.290 | 338 | 195 | 4 | 285 | 616 | 245 | 544 | 1.03e-37 | 147 |
| Msa1385180 | MtrunA17_Chr4g0028651 | 30.571 | 350 | 213 | 7 | 289 | 617 | 354 | 694 | 1.54e-37 | 148 |
| Msa1385180 | MtrunA17_Chr5g0435281 | 30.725 | 345 | 211 | 8 | 288 | 616 | 177 | 509 | 2.00e-36 | 143 |
| Msa1385180 | MtrunA17_Chr8g0351061 | 33.708 | 178 | 107 | 3 | 393 | 567 | 408 | 577 | 1.38e-22 | 102 |
| Msa1385180 | MtrunA17_Chr3g0115381 | 37.333 | 150 | 87 | 2 | 396 | 545 | 545 | 687 | 9.73e-21 | 97.1 |
| Msa1385180 | MtrunA17_Chr1g0163291 | 33.775 | 151 | 92 | 2 | 393 | 543 | 386 | 528 | 2.54e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385180 | AT5G66600.14 | 55.431 | 626 | 232 | 18 | 22 | 622 | 11 | 614 | 0.0 | 613 |
| Msa1385180 | AT5G66600.1 | 55.431 | 626 | 232 | 18 | 22 | 622 | 11 | 614 | 0.0 | 613 |
| Msa1385180 | AT5G66600.4 | 55.431 | 626 | 232 | 18 | 22 | 622 | 11 | 614 | 0.0 | 613 |
| Msa1385180 | AT5G66600.9 | 55.431 | 626 | 232 | 18 | 22 | 622 | 11 | 614 | 0.0 | 613 |
| Msa1385180 | AT5G66600.3 | 55.431 | 626 | 232 | 18 | 22 | 622 | 11 | 614 | 0.0 | 613 |
| Msa1385180 | AT5G66600.2 | 55.810 | 611 | 225 | 17 | 35 | 622 | 6 | 594 | 0.0 | 606 |
| Msa1385180 | AT5G66600.7 | 56.392 | 571 | 214 | 14 | 74 | 622 | 3 | 560 | 0.0 | 585 |
| Msa1385180 | AT5G66600.12 | 54.476 | 525 | 195 | 16 | 22 | 523 | 11 | 514 | 2.12e-168 | 490 |
| Msa1385180 | AT5G66600.11 | 54.476 | 525 | 195 | 16 | 22 | 523 | 11 | 514 | 2.12e-168 | 490 |
| Msa1385180 | AT5G66600.6 | 54.476 | 525 | 195 | 16 | 22 | 523 | 11 | 514 | 2.12e-168 | 490 |
| Msa1385180 | AT5G66600.13 | 54.476 | 525 | 195 | 16 | 22 | 523 | 11 | 514 | 2.12e-168 | 490 |
| Msa1385180 | AT5G66600.10 | 53.222 | 481 | 182 | 15 | 22 | 479 | 11 | 471 | 1.53e-145 | 431 |
| Msa1385180 | AT5G66600.8 | 53.222 | 481 | 182 | 15 | 22 | 479 | 11 | 471 | 1.53e-145 | 431 |
| Msa1385180 | AT5G66600.5 | 53.222 | 481 | 182 | 15 | 22 | 479 | 11 | 471 | 1.53e-145 | 431 |
| Msa1385180 | AT2G23700.1 | 55.370 | 419 | 154 | 8 | 220 | 622 | 306 | 707 | 1.16e-142 | 431 |
| Msa1385180 | AT2G23700.1 | 47.126 | 174 | 79 | 6 | 13 | 182 | 1 | 165 | 3.88e-29 | 123 |
| Msa1385180 | AT5G66600.15 | 54.225 | 426 | 164 | 11 | 74 | 479 | 3 | 417 | 4.26e-135 | 402 |
| Msa1385180 | AT3G18900.5 | 37.752 | 596 | 288 | 12 | 29 | 616 | 5 | 525 | 1.48e-102 | 322 |
| Msa1385180 | AT3G18900.4 | 37.604 | 601 | 287 | 12 | 29 | 616 | 5 | 530 | 2.25e-102 | 321 |
| Msa1385180 | AT3G18900.6 | 40.121 | 496 | 224 | 7 | 127 | 616 | 21 | 449 | 6.52e-102 | 317 |
| Msa1385180 | AT3G18900.3 | 40.121 | 496 | 224 | 7 | 127 | 616 | 21 | 449 | 6.52e-102 | 317 |
| Msa1385180 | AT1G76620.1 | 34.990 | 503 | 264 | 11 | 126 | 621 | 75 | 521 | 3.59e-85 | 276 |
| Msa1385180 | AT5G47380.5 | 30.380 | 553 | 320 | 10 | 85 | 622 | 34 | 536 | 1.60e-79 | 261 |
| Msa1385180 | AT5G47380.4 | 30.380 | 553 | 320 | 10 | 85 | 622 | 90 | 592 | 3.03e-79 | 263 |
| Msa1385180 | AT5G47380.1 | 30.380 | 553 | 320 | 10 | 85 | 622 | 90 | 592 | 5.61e-79 | 262 |
| Msa1385180 | AT1G21060.1 | 36.346 | 509 | 237 | 14 | 122 | 616 | 68 | 503 | 1.14e-77 | 256 |
| Msa1385180 | AT1G21060.2 | 36.346 | 509 | 237 | 14 | 122 | 616 | 56 | 491 | 1.46e-77 | 255 |
| Msa1385180 | AT1G43020.1 | 31.976 | 491 | 222 | 10 | 133 | 622 | 61 | 440 | 1.10e-65 | 222 |
| Msa1385180 | AT3G18900.1 | 35.108 | 507 | 242 | 11 | 29 | 523 | 5 | 436 | 2.66e-65 | 222 |
| Msa1385180 | AT5G47380.2 | 30.088 | 452 | 256 | 9 | 85 | 526 | 90 | 491 | 1.70e-55 | 196 |
| Msa1385180 | AT5G47380.3 | 30.201 | 447 | 252 | 9 | 85 | 521 | 90 | 486 | 2.55e-54 | 193 |
| Msa1385180 | AT1G76620.2 | 33.086 | 405 | 208 | 11 | 126 | 523 | 75 | 423 | 3.13e-54 | 191 |
| Msa1385180 | AT3G18900.2 | 33.983 | 462 | 218 | 11 | 29 | 478 | 5 | 391 | 1.90e-50 | 180 |
| Msa1385180 | AT3G13000.1 | 33.518 | 361 | 201 | 12 | 289 | 619 | 197 | 548 | 1.95e-46 | 172 |
| Msa1385180 | AT3G13000.3 | 33.518 | 361 | 201 | 12 | 289 | 619 | 226 | 577 | 2.92e-46 | 172 |
| Msa1385180 | AT3G13000.2 | 33.518 | 361 | 201 | 12 | 289 | 619 | 226 | 577 | 2.92e-46 | 172 |
| Msa1385180 | AT1G16750.1 | 32.055 | 365 | 199 | 12 | 288 | 616 | 176 | 527 | 8.69e-43 | 162 |
| Msa1385180 | AT5G42690.3 | 33.731 | 335 | 186 | 10 | 288 | 617 | 184 | 487 | 1.97e-39 | 151 |
| Msa1385180 | AT5G42690.5 | 33.731 | 335 | 186 | 10 | 288 | 617 | 209 | 512 | 2.34e-39 | 152 |
| Msa1385180 | AT2G39690.5 | 28.374 | 578 | 292 | 19 | 87 | 617 | 22 | 524 | 2.87e-39 | 152 |
| Msa1385180 | AT2G39690.1 | 28.201 | 578 | 292 | 18 | 87 | 617 | 22 | 523 | 3.03e-39 | 151 |
| Msa1385180 | AT5G42690.1 | 33.731 | 335 | 186 | 10 | 288 | 617 | 235 | 538 | 3.81e-39 | 151 |
| Msa1385180 | AT5G42690.2 | 33.731 | 335 | 186 | 10 | 288 | 617 | 236 | 539 | 4.02e-39 | 151 |
| Msa1385180 | AT5G42690.4 | 33.731 | 335 | 186 | 10 | 288 | 617 | 236 | 539 | 4.02e-39 | 151 |
| Msa1385180 | AT1G43020.3 | 31.026 | 390 | 157 | 10 | 133 | 521 | 61 | 339 | 7.99e-39 | 147 |
| Msa1385180 | AT2G39690.8 | 28.447 | 573 | 287 | 18 | 92 | 617 | 1 | 497 | 1.30e-38 | 149 |
| Msa1385180 | AT2G39690.4 | 28.621 | 573 | 287 | 19 | 92 | 617 | 1 | 498 | 1.77e-38 | 149 |
| Msa1385180 | AT2G39690.2 | 32.102 | 352 | 188 | 10 | 288 | 617 | 95 | 417 | 4.61e-38 | 146 |
| Msa1385180 | AT4G37080.2 | 36.052 | 233 | 132 | 4 | 392 | 616 | 385 | 608 | 1.51e-36 | 145 |
| Msa1385180 | AT4G37080.3 | 36.052 | 233 | 132 | 4 | 392 | 616 | 385 | 608 | 1.51e-36 | 145 |
| Msa1385180 | AT4G37080.1 | 36.052 | 233 | 132 | 4 | 392 | 616 | 372 | 595 | 1.61e-36 | 145 |
| Msa1385180 | AT3G12540.2 | 25.731 | 513 | 303 | 17 | 133 | 617 | 42 | 504 | 1.09e-33 | 135 |
| Msa1385180 | AT3G12540.1 | 24.643 | 560 | 344 | 17 | 86 | 617 | 62 | 571 | 1.90e-33 | 135 |
| Msa1385180 | AT5G60720.1 | 30.189 | 371 | 197 | 12 | 289 | 617 | 340 | 690 | 1.15e-32 | 134 |
| Msa1385180 | AT1G16750.2 | 31.776 | 214 | 113 | 7 | 288 | 477 | 176 | 380 | 9.42e-25 | 107 |
| Msa1385180 | AT2G39690.7 | 27.521 | 476 | 232 | 15 | 87 | 523 | 22 | 423 | 7.22e-24 | 105 |
| Msa1385180 | AT2G39690.6 | 27.615 | 478 | 230 | 17 | 87 | 523 | 22 | 424 | 1.21e-23 | 104 |
| Msa1385180 | AT4G08550.1 | 35.032 | 157 | 94 | 3 | 396 | 552 | 425 | 573 | 1.56e-21 | 99.8 |
| Msa1385180 | AT4G08550.2 | 35.032 | 157 | 94 | 3 | 396 | 552 | 479 | 627 | 1.89e-21 | 99.4 |
| Msa1385180 | AT1G43020.4 | 28.228 | 333 | 122 | 10 | 133 | 458 | 61 | 283 | 5.50e-21 | 94.0 |
| Msa1385180 | AT1G43020.5 | 28.228 | 333 | 122 | 10 | 133 | 458 | 61 | 283 | 1.25e-20 | 93.6 |
| Msa1385180 | AT1G43020.2 | 28.228 | 333 | 122 | 10 | 133 | 458 | 61 | 283 | 1.25e-20 | 93.6 |
| Msa1385180 | AT3G11920.1 | 32.768 | 177 | 111 | 4 | 393 | 567 | 413 | 583 | 3.21e-20 | 95.5 |
| Msa1385180 | AT2G39690.3 | 27.446 | 419 | 199 | 14 | 92 | 471 | 1 | 353 | 8.97e-20 | 92.0 |
| Msa1385180 | AT4G37080.4 | 37.879 | 132 | 77 | 1 | 392 | 523 | 385 | 511 | 1.12e-16 | 84.0 |
Find 125 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAGTCACTTTGCATTTC+AGG | 0.104604 | tig0020715:+101107 | None:intergenic |
| AAGAGACTCACTTGTAATTT+TGG | 0.138544 | tig0020715:+98251 | None:intergenic |
| ATGTCCTCGGAAAGTTTATT+TGG | 0.216360 | tig0020715:+98565 | None:intergenic |
| GATTTGAGTCTCCAACTATT+TGG | 0.218537 | tig0020715:+96637 | None:intergenic |
| CACTATGGACTTCACCTTTA+GGG | 0.242461 | tig0020715:+99958 | None:intergenic |
| TTGGTAGTGTTACATCTTAA+TGG | 0.249426 | tig0020715:-96897 | Msa1385180:three_prime_UTR |
| AATCCATTCAATGCACTTCT+TGG | 0.270499 | tig0020715:+96977 | None:intergenic |
| CAATTGTCATTATATTTATC+AGG | 0.281230 | tig0020715:+96776 | None:intergenic |
| AGATCTTGAAACACCCTCTT+TGG | 0.285334 | tig0020715:+97191 | None:intergenic |
| GTGATTCAGGTAGAGATTCT+AGG | 0.296325 | tig0020715:+97036 | None:intergenic |
| AGTAGCACATGATCACTTTC+AGG | 0.302446 | tig0020715:-101136 | None:intergenic |
| ATGAGGAGAAGCTAGCTTTC+TGG | 0.319002 | tig0020715:-98096 | Msa1385180:CDS |
| AATTGCGGTGTTAGAGTTAG+AGG | 0.324704 | tig0020715:-99428 | Msa1385180:CDS |
| TGTCTTAAAATGATACTTCT+TGG | 0.325120 | tig0020715:-96916 | Msa1385180:exon |
| GCACTATGGACTTCACCTTT+AGG | 0.328459 | tig0020715:+99957 | None:intergenic |
| GATTTCGTTAATGATTCTTC+TGG | 0.331571 | tig0020715:+99073 | None:intergenic |
| ACAGTTTCCTCCTTGGTAGA+TGG | 0.360682 | tig0020715:+99334 | None:intergenic |
| GCCAGCCACAGAATTGATTA+AGG | 0.361092 | tig0020715:-99452 | Msa1385180:CDS |
| AAGGCCTCAACATGATTATC+TGG | 0.362523 | tig0020715:+100579 | None:intergenic |
| GACAATCCTTTCCATGTTGA+AGG | 0.367794 | tig0020715:-98367 | Msa1385180:CDS |
| CTGATAAATATAATGACAAT+TGG | 0.377514 | tig0020715:-96775 | Msa1385180:three_prime_UTR |
| TAGCGTAGAACATTCAGTTT+TGG | 0.377719 | tig0020715:+99249 | None:intergenic |
| TGTGGAGAAAATAAAATGTT+AGG | 0.392386 | tig0020715:-100903 | Msa1385180:CDS |
| TCCTTAATCAATTCTGTGGC+TGG | 0.395060 | tig0020715:+99451 | None:intergenic |
| GTTAAGACCTCAGGCATAGA+AGG | 0.399795 | tig0020715:+99271 | None:intergenic |
| TCCTCATGTTCCAACTTCCC+TGG | 0.401836 | tig0020715:+98112 | None:intergenic |
| ACAACTAGAGAGAAGATTAC+AGG | 0.409737 | tig0020715:-99661 | Msa1385180:CDS |
| TCAAAGACAAAATTCAAAAC+AGG | 0.410809 | tig0020715:-97521 | Msa1385180:CDS |
| TCACACTTTGCTCTATGTTC+AGG | 0.413440 | tig0020715:-97455 | Msa1385180:CDS |
| AAAGAGGGTGTTTCAAGATC+TGG | 0.413791 | tig0020715:-97189 | Msa1385180:CDS |
| CGATTAGAAGAAGTAGATCC+AGG | 0.414544 | tig0020715:-98130 | Msa1385180:CDS |
| GCGAATGATTCAACAAGCTT+TGG | 0.415486 | tig0020715:+97101 | None:intergenic |
| TATAAAGAGAATCAGAAATC+AGG | 0.439388 | tig0020715:-98292 | Msa1385180:CDS |
| CACAGTGTACAACATTTACA+AGG | 0.441294 | tig0020715:-99105 | Msa1385180:CDS |
| AGAAGTAGATCCAGGGAAGT+TGG | 0.445141 | tig0020715:-98122 | Msa1385180:CDS |
| CCTCTTGCTTCATAGCACTA+TGG | 0.447376 | tig0020715:+99943 | None:intergenic |
| ATCATAGGATTCACCTGTCC+GGG | 0.450390 | tig0020715:+97701 | None:intergenic |
| TATCTAAAATTGAAGTTATG+TGG | 0.456390 | tig0020715:+96954 | None:intergenic |
| GAAAGGCCAGGATGTATCAT+AGG | 0.456490 | tig0020715:+98499 | None:intergenic |
| TCGAATGTCTCGCCCCGGAC+AGG | 0.456865 | tig0020715:-97714 | Msa1385180:intron |
| GAAGGACTCAAGGAGTTTAG+TGG | 0.461754 | tig0020715:-98349 | Msa1385180:CDS |
| ATTTCAACCATGGTGTTGTA+TGG | 0.465340 | tig0020715:+98325 | None:intergenic |
| CAAGGCACAACCGTTCAAAC+AGG | 0.466381 | tig0020715:-100866 | Msa1385180:intron |
| AAGTTATTATTCTTGAACCT+TGG | 0.466616 | tig0020715:+98409 | None:intergenic |
| GATAATAAGAAAAGAGTTGA+AGG | 0.468044 | tig0020715:-100609 | Msa1385180:CDS |
| AATCCAAGAAGTGCATTGAA+TGG | 0.470825 | tig0020715:-96980 | Msa1385180:CDS |
| AGGAATAAACAAAGCCCTAA+AGG | 0.473840 | tig0020715:-99972 | Msa1385180:CDS |
| ACACCATGGTTGAAATATCA+TGG | 0.478714 | tig0020715:-98318 | Msa1385180:CDS |
| GATATGAACATCAGAGTTTG+AGG | 0.478741 | tig0020715:-99177 | Msa1385180:CDS |
| GAAAGTTTATTTGGATCCAC+TGG | 0.480761 | tig0020715:+98574 | None:intergenic |
| AAGATTACAGGATCAGTTTG+AGG | 0.483902 | tig0020715:-99649 | Msa1385180:CDS |
| CTATATGTGATATCAATCTA+CGG | 0.486343 | tig0020715:+96675 | None:intergenic |
| GGTTAGATCCACTTTAGAAA+AGG | 0.488861 | tig0020715:-99628 | Msa1385180:CDS |
| GAGTACATTCGAGCTACATT+AGG | 0.490739 | tig0020715:-97152 | Msa1385180:CDS |
| TTGCAGGCTGCATATAAAGT+TGG | 0.492936 | tig0020715:-97785 | Msa1385180:intron |
| ACAAAATTCAAAACAGGAGC+TGG | 0.493686 | tig0020715:-97515 | Msa1385180:CDS |
| TACCATCTTCATTCTATCAA+AGG | 0.495545 | tig0020715:+100560 | None:intergenic |
| CAGGCTGCATATAAAGTTGG+AGG | 0.501104 | tig0020715:-97782 | Msa1385180:CDS |
| GGCCTTTGATAGAATGAAGA+TGG | 0.505046 | tig0020715:-100562 | Msa1385180:intron |
| GTTACATCTTAATGGAGAAA+CGG | 0.506577 | tig0020715:-96889 | Msa1385180:three_prime_UTR |
| CTGTTTGAACGGTTGTGCCT+TGG | 0.507631 | tig0020715:+100867 | None:intergenic |
| GATCATAGGATTCACCTGTC+CGG | 0.510393 | tig0020715:+97700 | None:intergenic |
| GAACTAGGAGATGAAAGGCC+AGG | 0.513380 | tig0020715:+98487 | None:intergenic |
| CATAGAGCAAAGTGTGAAAG+TGG | 0.514117 | tig0020715:+97461 | None:intergenic |
| TTGGAGATCAAGGCGATATG+TGG | 0.525849 | tig0020715:-98435 | Msa1385180:CDS |
| TTGAGTCCTTCAACATGGAA+AGG | 0.527244 | tig0020715:+98361 | None:intergenic |
| TCCACTTTAGAAAAGGCACT+TGG | 0.527701 | tig0020715:-99621 | Msa1385180:CDS |
| TCACTGACTGTGCTAAATCA+AGG | 0.543584 | tig0020715:-99992 | Msa1385180:CDS |
| CAATACAAAATACTATACTT+AGG | 0.544168 | tig0020715:-97739 | Msa1385180:CDS |
| GACAACACCTCAAGCACCAT+TGG | 0.544456 | tig0020715:-99299 | Msa1385180:CDS |
| TGAATCATTCGCAAAAGACT+CGG | 0.545921 | tig0020715:-97090 | Msa1385180:CDS |
| AAATAAACTTTCCGAGGACA+TGG | 0.552065 | tig0020715:-98563 | Msa1385180:CDS |
| AATCTCTACCTGAATCACTA+AGG | 0.553338 | tig0020715:-97031 | Msa1385180:CDS |
| AAGAAACAAACCTGTTTGAA+CGG | 0.555319 | tig0020715:+100856 | None:intergenic |
| TATATGTGATATCAATCTAC+GGG | 0.555405 | tig0020715:+96676 | None:intergenic |
| ACTATTTGGTTACAAAATCG+TGG | 0.556968 | tig0020715:+96651 | None:intergenic |
| TGGAAACACATCCTCATCAC+TGG | 0.559239 | tig0020715:-99601 | Msa1385180:CDS |
| ATTGTGTTGTGTTGTGATGT+CGG | 0.560275 | tig0020715:-96809 | Msa1385180:three_prime_UTR |
| GACCCTCCTATGATACATCC+TGG | 0.567538 | tig0020715:-98505 | Msa1385180:CDS |
| AATTTCCTTAATCAATTCTG+TGG | 0.567883 | tig0020715:+99447 | None:intergenic |
| GGTTACACCTTCTATGCCTG+AGG | 0.567968 | tig0020715:-99278 | Msa1385180:CDS |
| TTTCCATGTTGAAGGACTCA+AGG | 0.569447 | tig0020715:-98359 | Msa1385180:CDS |
| TCCAGGGAAGTTGGAACATG+AGG | 0.572203 | tig0020715:-98113 | Msa1385180:CDS |
| AGGCCAGGATGTATCATAGG+AGG | 0.574012 | tig0020715:+98502 | None:intergenic |
| AGAATTGATTAAGGAAATTG+CGG | 0.574659 | tig0020715:-99443 | Msa1385180:CDS |
| ATAATAAGAAAAGAGTTGAA+GGG | 0.576256 | tig0020715:-100608 | Msa1385180:CDS |
| AAATGAAAAGATGATGCCTA+AGG | 0.576588 | tig0020715:-99571 | Msa1385180:intron |
| AATGGTGCTTGAGGTGTTGT+CGG | 0.580229 | tig0020715:+99301 | None:intergenic |
| CTATTTGGTTACAAAATCGT+GGG | 0.580677 | tig0020715:+96652 | None:intergenic |
| GATCAACATACACAATGCAT+TGG | 0.584592 | tig0020715:-98074 | Msa1385180:CDS |
| ATCAGTCTTGCTGAACATCT+CGG | 0.584693 | tig0020715:-98619 | Msa1385180:intron |
| AATAGAAAAGCCGCTCGTTG+TGG | 0.585793 | tig0020715:+98456 | None:intergenic |
| AGCTACATTAGGCGTACGAA+AGG | 0.590906 | tig0020715:-97141 | Msa1385180:CDS |
| GATTAGAAGAAGTAGATCCA+GGG | 0.599683 | tig0020715:-98129 | Msa1385180:CDS |
| TAGGACTTAGATTTACTCCA+AGG | 0.601220 | tig0020715:-100884 | Msa1385180:CDS |
| TAATAAGAAAAGAGTTGAAG+GGG | 0.602560 | tig0020715:-100607 | Msa1385180:CDS |
| GGCATAGAAGGTGTAACCAA+TGG | 0.608767 | tig0020715:+99283 | None:intergenic |
| AGAATACCGCTGGATCAGAA+TGG | 0.608826 | tig0020715:+97429 | None:intergenic |
| CCATAGTGCTATGAAGCAAG+AGG | 0.610584 | tig0020715:-99943 | Msa1385180:intron |
| TCATCATTGTCCACAACGAG+CGG | 0.614026 | tig0020715:-98466 | Msa1385180:CDS |
| AAGGCGATATGTGGAGTCCA+AGG | 0.615664 | tig0020715:-98426 | Msa1385180:CDS |
| TTTGTGTCCTAGTGGTGTCA+TGG | 0.615867 | tig0020715:-97066 | Msa1385180:CDS |
| ACTCCTTGAGTCCTTCAACA+TGG | 0.616645 | tig0020715:+98356 | None:intergenic |
| AATCCATGATATTTCAACCA+TGG | 0.619395 | tig0020715:+98315 | None:intergenic |
| ATCATGTCCATGACACCACT+AGG | 0.621315 | tig0020715:+97059 | None:intergenic |
| AGGTGTCGAATGTCTCGCCC+CGG | 0.626926 | tig0020715:-97719 | Msa1385180:CDS |
| TGGACGACAAGCATATGCAT+TGG | 0.627823 | tig0020715:-97495 | Msa1385180:CDS |
| GACTCGGATTTGTGTCCTAG+TGG | 0.642968 | tig0020715:-97074 | Msa1385180:CDS |
| ATGATGAACTAGGAGATGAA+AGG | 0.643049 | tig0020715:+98482 | None:intergenic |
| TAATCCAGATAATCATGTTG+AGG | 0.649033 | tig0020715:-100583 | Msa1385180:CDS |
| GGCCAGGATGTATCATAGGA+GGG | 0.650926 | tig0020715:+98503 | None:intergenic |
| ATTTGAATGGACCAGTGATG+AGG | 0.653122 | tig0020715:+99590 | None:intergenic |
| ACGTGCATATACACCAAAGA+GGG | 0.654488 | tig0020715:-97204 | Msa1385180:CDS |
| TTCGGCATCTCCATCTACCA+AGG | 0.656111 | tig0020715:-99344 | Msa1385180:CDS |
| GGATCCAAATAAACTTTCCG+AGG | 0.657195 | tig0020715:-98569 | Msa1385180:CDS |
| TACGTGCATATACACCAAAG+AGG | 0.657722 | tig0020715:-97205 | Msa1385180:CDS |
| AGGAAACCATTCTGATCCAG+CGG | 0.658662 | tig0020715:-97435 | Msa1385180:intron |
| AATATCTGATCATGTTCCAG+TGG | 0.666723 | tig0020715:-98590 | Msa1385180:CDS |
| GTTGTGGACAATGATGAACT+AGG | 0.667692 | tig0020715:+98472 | None:intergenic |
| TCATAGGATTCACCTGTCCG+GGG | 0.671251 | tig0020715:+97702 | None:intergenic |
| ACAGTGTACAACATTTACAA+GGG | 0.685994 | tig0020715:-99104 | Msa1385180:CDS |
| GGTATGGGACTTGAAAAGTG+TGG | 0.692140 | tig0020715:-100921 | Msa1385180:CDS |
| GGTGTAACCAATGGTGCTTG+AGG | 0.693133 | tig0020715:+99292 | None:intergenic |
| TAGTGGACCATACAACACCA+TGG | 0.700278 | tig0020715:-98332 | Msa1385180:CDS |
| GGCATCTCCATCTACCAAGG+AGG | 0.713209 | tig0020715:-99341 | Msa1385180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTTCTTCAAAAAAT+AGG | + | tig0020715:98068-98087 | None:intergenic | 10.0% |
| !!! | AATTTTATTTTTTTGGTATA+TGG | + | tig0020715:100103-100122 | None:intergenic | 10.0% |
| !! | TATTTCATAATGAAAAAGAA+TGG | + | tig0020715:97245-97264 | None:intergenic | 15.0% |
| !!! | CTATTTTCTCAAATTATTAA+CGG | - | tig0020715:97423-97442 | Msa1385180:intron | 15.0% |
| !!! | TTAAAAAGTTTGTTATGAAA+TGG | - | tig0020715:97564-97583 | Msa1385180:intron | 15.0% |
| !! | ATATAATACTTATTGACATT+TGG | - | tig0020715:97899-97918 | Msa1385180:CDS | 15.0% |
| !! | TTTCGATAAAAAATTATCTT+CGG | - | tig0020715:98405-98424 | Msa1385180:CDS | 15.0% |
| !! | AATAAAAGATGACAATAAAA+CGG | - | tig0020715:99018-99037 | Msa1385180:intron | 15.0% |
| !!! | TTTTGAAGGTAAAAAAATTA+AGG | - | tig0020715:99887-99906 | Msa1385180:intron | 15.0% |
| !! | TATATCTTAATATATACCTG+AGG | - | tig0020715:96988-97007 | Msa1385180:CDS | 20.0% |
| !!! | TGTTGTTTTAAAGTAGAATT+GGG | - | tig0020715:97019-97038 | Msa1385180:CDS | 20.0% |
| !! | ATAATAAGAAAAGAGTTGAA+GGG | - | tig0020715:97159-97178 | Msa1385180:CDS | 20.0% |
| !! | AAGATGATGTAAAAAACAAA+AGG | + | tig0020715:97282-97301 | None:intergenic | 20.0% |
| !! | ATAAGGAATGATTAACAATA+TGG | + | tig0020715:97684-97703 | None:intergenic | 20.0% |
| !! | AAATTAAAATTGTTGTGTGT+GGG | + | tig0020715:97712-97731 | None:intergenic | 20.0% |
| !!! | TATTTGTTTGAATTGGTTTT+AGG | - | tig0020715:97740-97759 | Msa1385180:CDS | 20.0% |
| !! | AACAAAAGAACATGATTAAA+TGG | + | tig0020715:97926-97945 | None:intergenic | 20.0% |
| !!! | TCTTTTATAAACATGACAAT+AGG | - | tig0020715:98855-98874 | Msa1385180:intron | 20.0% |
| !! | TCGTATACAGTATAAATAAA+TGG | - | tig0020715:99044-99063 | Msa1385180:intron | 20.0% |
| !!! | TATGTCATTTTTGTTGTTTA+AGG | - | tig0020715:99602-99621 | Msa1385180:CDS | 20.0% |
| !! | GCATTGGAAAAAATATTATA+GGG | + | tig0020715:99759-99778 | None:intergenic | 20.0% |
| !! | TGCATTGGAAAAAATATTAT+AGG | + | tig0020715:99760-99779 | None:intergenic | 20.0% |
| !!! | TATCTAGTTTGATTATAAGT+TGG | - | tig0020715:99782-99801 | Msa1385180:intron | 20.0% |
| !! | TTAACAGTTTCATCTTTAAA+TGG | + | tig0020715:99927-99946 | None:intergenic | 20.0% |
| !! | GTATGATATATTTGTTTGTT+TGG | - | tig0020715:99956-99975 | Msa1385180:CDS | 20.0% |
| !! | CAATACAAAATACTATACTT+AGG | - | tig0020715:100028-100047 | Msa1385180:intron | 20.0% |
| !!! | TATCTAAAATTGAAGTTATG+TGG | + | tig0020715:100816-100835 | None:intergenic | 20.0% |
| !!! | TTTTAGATATCTCATATCTA+AGG | - | tig0020715:100827-100846 | Msa1385180:intron | 20.0% |
| !! | CAATTGTCATTATATTTATC+AGG | + | tig0020715:100994-101013 | None:intergenic | 20.0% |
| !! | CTGATAAATATAATGACAAT+TGG | - | tig0020715:100992-101011 | Msa1385180:intron | 20.0% |
| !! | AAAGTGACTTGTGAAATATT+TGG | - | tig0020715:96670-96689 | Msa1385180:three_prime_UTR | 25.0% |
| ! | TGTGGAGAAAATAAAATGTT+AGG | - | tig0020715:96864-96883 | Msa1385180:three_prime_UTR | 25.0% |
| !!! | CAATTCTACTTTAAAACAAC+AGG | + | tig0020715:97020-97039 | None:intergenic | 25.0% |
| !!! | CTGTTGTTTTAAAGTAGAAT+TGG | - | tig0020715:97018-97037 | Msa1385180:CDS | 25.0% |
| !! | TCAACTCTTTTCTTATTATC+AGG | + | tig0020715:97158-97177 | None:intergenic | 25.0% |
| ! | GATAATAAGAAAAGAGTTGA+AGG | - | tig0020715:97158-97177 | Msa1385180:CDS | 25.0% |
| ! | TAATAAGAAAAGAGTTGAAG+GGG | - | tig0020715:97160-97179 | Msa1385180:CDS | 25.0% |
| ! | AATATGCCAAATATGAATCA+TGG | + | tig0020715:97484-97503 | None:intergenic | 25.0% |
| !! | TAGTTTCTGTGTTGAATTTT+TGG | + | tig0020715:97540-97559 | None:intergenic | 25.0% |
| ! | GAGAAAGGTAAAAAAGAAAA+AGG | + | tig0020715:97606-97625 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTACCTTTCTCAA+AGG | - | tig0020715:97608-97627 | Msa1385180:intron | 25.0% |
| ! | AATTAAAATTGTTGTGTGTG+GGG | + | tig0020715:97711-97730 | None:intergenic | 25.0% |
| ! | CAAATTAAAATTGTTGTGTG+TGG | + | tig0020715:97713-97732 | None:intergenic | 25.0% |
| !!! | TTTGAATTGGTTTTAGGATA+TGG | - | tig0020715:97746-97765 | Msa1385180:CDS | 25.0% |
| !!! | TTGAATTGGTTTTAGGATAT+GGG | - | tig0020715:97747-97766 | Msa1385180:CDS | 25.0% |
| ! | AATAAGTATTATATGACTGC+AGG | + | tig0020715:97893-97912 | None:intergenic | 25.0% |
| ! | GAAGCATGATTAAAATAACA+TGG | + | tig0020715:98023-98042 | None:intergenic | 25.0% |
| !!! | ATTTTAATCATGCTTCTTCT+TGG | - | tig0020715:98027-98046 | Msa1385180:intron | 25.0% |
| ! | AATTTCCTTAATCAATTCTG+TGG | + | tig0020715:98323-98342 | None:intergenic | 25.0% |
| ! | AGAATTGATTAAGGAAATTG+CGG | - | tig0020715:98324-98343 | Msa1385180:CDS | 25.0% |
| ! | ATTATTAAACTGCATTAACC+AGG | + | tig0020715:98790-98809 | None:intergenic | 25.0% |
| ! | AACATAGTTGCAAAGAAAAA+TGG | + | tig0020715:98934-98953 | None:intergenic | 25.0% |
| ! | AAGTTATTATTCTTGAACCT+TGG | + | tig0020715:99361-99380 | None:intergenic | 25.0% |
| ! | TATAAAGAGAATCAGAAATC+AGG | - | tig0020715:99475-99494 | Msa1385180:intron | 25.0% |
| ! | ATCAAACTAGATAAATGCAT+TGG | + | tig0020715:99775-99794 | None:intergenic | 25.0% |
| !!! | ACTCTTTTCATATTGTTTTG+TGG | + | tig0020715:99859-99878 | None:intergenic | 25.0% |
| !!! | AAGAGTATTTCTTCTTTTGA+AGG | - | tig0020715:99873-99892 | Msa1385180:intron | 25.0% |
| ! | TTTCATCTTTAAATGGCATA+AGG | + | tig0020715:99920-99939 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGGTATATGGAAG+TGG | + | tig0020715:100097-100116 | None:intergenic | 25.0% |
| ! | TCAAAGACAAAATTCAAAAC+AGG | - | tig0020715:100246-100265 | Msa1385180:intron | 25.0% |
| ! | TAATGAACTTGTGTACAAAT+GGG | + | tig0020715:100371-100390 | None:intergenic | 25.0% |
| ! | AATTCCTAGTATCTTTGTTA+TGG | + | tig0020715:100475-100494 | None:intergenic | 25.0% |
| ! | TAATTCTGATGAACTATGAT+AGG | - | tig0020715:100539-100558 | Msa1385180:intron | 25.0% |
| ! | TGTCTTAAAATGATACTTCT+TGG | - | tig0020715:100851-100870 | Msa1385180:intron | 25.0% |
| ! | TATATGTGATATCAATCTAC+GGG | + | tig0020715:101094-101113 | None:intergenic | 25.0% |
| ! | CTATATGTGATATCAATCTA+CGG | + | tig0020715:101095-101114 | None:intergenic | 25.0% |
| !!! | GACTCTTAGAAGCTTTTTTT+TGG | - | tig0020715:96692-96711 | Msa1385180:intron | 30.0% |
| GAATTGTATGTGAATAGCTA+TGG | - | tig0020715:96808-96827 | Msa1385180:three_prime_UTR | 30.0% | |
| AAGAAACAAACCTGTTTGAA+CGG | + | tig0020715:96914-96933 | None:intergenic | 30.0% | |
| TAATCCAGATAATCATGTTG+AGG | - | tig0020715:97184-97203 | Msa1385180:CDS | 30.0% | |
| TACCATCTTCATTCTATCAA+AGG | + | tig0020715:97210-97229 | None:intergenic | 30.0% | |
| ! | CAATCATATACCTTTGAGAA+AGG | + | tig0020715:97621-97640 | None:intergenic | 30.0% |
| ATTAAAATTGTTGTGTGTGG+GGG | + | tig0020715:97710-97729 | None:intergenic | 30.0% | |
| CCAATTCAAACAAATACTTG+AGG | + | tig0020715:97736-97755 | None:intergenic | 30.0% | |
| CCTCAAGTATTTGTTTGAAT+TGG | - | tig0020715:97733-97752 | Msa1385180:CDS | 30.0% | |
| ! | TTTGTTTGTCCTTTTCTGTT+TGG | - | tig0020715:97940-97959 | Msa1385180:intron | 30.0% |
| AAAATAGGCATAAAGCAACT+AGG | + | tig0020715:98053-98072 | None:intergenic | 30.0% | |
| ! | GCATCATCTTTTCATTTGAA+TGG | + | tig0020715:98193-98212 | None:intergenic | 30.0% |
| AAATGAAAAGATGATGCCTA+AGG | - | tig0020715:98196-98215 | Msa1385180:intron | 30.0% | |
| GCAACAAGTTCAATATACTT+AGG | - | tig0020715:98221-98240 | Msa1385180:intron | 30.0% | |
| CTATAGAGTTACATTGTTGT+AGG | - | tig0020715:98246-98265 | Msa1385180:intron | 30.0% | |
| ACAGTGTACAACATTTACAA+GGG | - | tig0020715:98663-98682 | Msa1385180:intron | 30.0% | |
| GATTTCGTTAATGATTCTTC+TGG | + | tig0020715:98697-98716 | None:intergenic | 30.0% | |
| ! | AAAATGATTTTCCATGAGAC+TGG | + | tig0020715:98766-98785 | None:intergenic | 30.0% |
| ! | TCATGGAAAATCATTTTACC+TGG | - | tig0020715:98769-98788 | Msa1385180:intron | 30.0% |
| AATCCATGATATTTCAACCA+TGG | + | tig0020715:99455-99474 | None:intergenic | 30.0% | |
| ! | AAGAGACTCACTTGTAATTT+TGG | + | tig0020715:99519-99538 | None:intergenic | 30.0% |
| TAGTAAAAATTTGCATGCTG+AGG | + | tig0020715:100141-100160 | None:intergenic | 30.0% | |
| TATAATGTAGTGACTGACAT+GGG | - | tig0020715:100173-100192 | Msa1385180:intron | 30.0% | |
| GTAATGAACTTGTGTACAAA+TGG | + | tig0020715:100372-100391 | None:intergenic | 30.0% | |
| !!! | CATCAGCTTATTTTTGTAAC+CGG | - | tig0020715:100432-100451 | Msa1385180:intron | 30.0% |
| TAGTCCATAACAAAGATACT+AGG | - | tig0020715:100468-100487 | Msa1385180:intron | 30.0% | |
| AACTCATTAGAGTTAAGCAA+AGG | + | tig0020715:100514-100533 | None:intergenic | 30.0% | |
| !!! | GCTTTGGTAGAAGTATTTTT+TGG | + | tig0020715:100653-100672 | None:intergenic | 30.0% |
| !! | TTGGTAGTGTTACATCTTAA+TGG | - | tig0020715:100870-100889 | Msa1385180:CDS | 30.0% |
| GTTACATCTTAATGGAGAAA+CGG | - | tig0020715:100878-100897 | Msa1385180:CDS | 30.0% | |
| CTATTTGGTTACAAAATCGT+GGG | + | tig0020715:101118-101137 | None:intergenic | 30.0% | |
| ACTATTTGGTTACAAAATCG+TGG | + | tig0020715:101119-101138 | None:intergenic | 30.0% | |
| ! | CGATTTTGTAACCAAATAGT+TGG | - | tig0020715:101119-101138 | Msa1385180:CDS | 30.0% |
| ! | CTCTCTACTGTGAAGTTTTT+AGG | - | tig0020715:96740-96759 | Msa1385180:three_prime_UTR | 35.0% |
| !!! | CTACTGTGAAGTTTTTAGGT+AGG | - | tig0020715:96744-96763 | Msa1385180:three_prime_UTR | 35.0% |
| !!! | TGTGAAGTTTTTAGGTAGGA+TGG | - | tig0020715:96748-96767 | Msa1385180:three_prime_UTR | 35.0% |
| ! | GTGAATAGCTATGGTTTTTG+TGG | - | tig0020715:96817-96836 | Msa1385180:three_prime_UTR | 35.0% |
| !! | TTTTTGTGGCTTTCAGGTAT+GGG | - | tig0020715:96831-96850 | Msa1385180:three_prime_UTR | 35.0% |
| TAGGACTTAGATTTACTCCA+AGG | - | tig0020715:96883-96902 | Msa1385180:three_prime_UTR | 35.0% | |
| ! | TTCTCATGTTGCTTGAATTG+AGG | - | tig0020715:96933-96952 | Msa1385180:CDS | 35.0% |
| ! | GCTTGAATTGAGGTTCTTTT+TGG | - | tig0020715:96943-96962 | Msa1385180:CDS | 35.0% |
| CTATTCCATACATACGCATT+CGG | - | tig0020715:97315-97334 | Msa1385180:intron | 35.0% | |
| GCACGAAAACTTTAGATTGA+AGG | - | tig0020715:97343-97362 | Msa1385180:intron | 35.0% | |
| !! | TTGGTGCCATGATTCATATT+TGG | - | tig0020715:97475-97494 | Msa1385180:CDS | 35.0% |
| ATTATGTATCATGAGTGCCA+AGG | - | tig0020715:97510-97529 | Msa1385180:CDS | 35.0% | |
| TTATGTATCATGAGTGCCAA+GGG | - | tig0020715:97511-97530 | Msa1385180:CDS | 35.0% | |
| ATTAGTCCCAACCATAATGT+TGG | - | tig0020715:97646-97665 | Msa1385180:intron | 35.0% | |
| TTAGTCCCAACCATAATGTT+GGG | - | tig0020715:97647-97666 | Msa1385180:intron | 35.0% | |
| AATGTCCCAACATTATGGTT+GGG | + | tig0020715:97655-97674 | None:intergenic | 35.0% | |
| TAATGTCCCAACATTATGGT+TGG | + | tig0020715:97656-97675 | None:intergenic | 35.0% | |
| CCATTAATGTCCCAACATTA+TGG | + | tig0020715:97660-97679 | None:intergenic | 35.0% | |
| CCATAATGTTGGGACATTAA+TGG | - | tig0020715:97657-97676 | Msa1385180:intron | 35.0% | |
| AGGAATAAACAAAGCCCTAA+AGG | - | tig0020715:97795-97814 | Msa1385180:intron | 35.0% | |
| TACCAGAACCTCATCATAAT+TGG | - | tig0020715:97852-97871 | Msa1385180:intron | 35.0% | |
| AACCAATTATGATGAGGTTC+TGG | + | tig0020715:97857-97876 | None:intergenic | 35.0% | |
| GAACCTCATCATAATTGGTT+TGG | - | tig0020715:97857-97876 | Msa1385180:intron | 35.0% | |
| TAGTTGTAGAATCTGTCACA+AGG | + | tig0020715:98093-98112 | None:intergenic | 35.0% | |
| ACAACTAGAGAGAAGATTAC+AGG | - | tig0020715:98106-98125 | Msa1385180:CDS | 35.0% | |
| AAGATTACAGGATCAGTTTG+AGG | - | tig0020715:98118-98137 | Msa1385180:CDS | 35.0% | |
| ! | GGTTAGATCCACTTTAGAAA+AGG | - | tig0020715:98139-98158 | Msa1385180:CDS | 35.0% |
| !! | ATTGAACTTGTTGCTACCTT+AGG | + | tig0020715:98215-98234 | None:intergenic | 35.0% |
| ! | ATCGAAAGCTTTTCTGTACA+AGG | + | tig0020715:98392-98411 | None:intergenic | 35.0% |
| ! | ATGTTTTACAGTTTCCTCCT+TGG | + | tig0020715:98443-98462 | None:intergenic | 35.0% |
| ! | TAGCGTAGAACATTCAGTTT+TGG | + | tig0020715:98521-98540 | None:intergenic | 35.0% |
| GATATGAACATCAGAGTTTG+AGG | - | tig0020715:98590-98609 | Msa1385180:CDS | 35.0% | |
| CACAGTGTACAACATTTACA+AGG | - | tig0020715:98662-98681 | Msa1385180:intron | 35.0% | |
| GCAACTATGTTATCAACCTA+AGG | - | tig0020715:98943-98962 | Msa1385180:intron | 35.0% | |
| AATATCTGATCATGTTCCAG+TGG | - | tig0020715:99177-99196 | Msa1385180:CDS | 35.0% | |
| GAAAGTTTATTTGGATCCAC+TGG | + | tig0020715:99196-99215 | None:intergenic | 35.0% | |
| ATGTCCTCGGAAAGTTTATT+TGG | + | tig0020715:99205-99224 | None:intergenic | 35.0% | |
| AAATAAACTTTCCGAGGACA+TGG | - | tig0020715:99204-99223 | Msa1385180:CDS | 35.0% | |
| ! | TATGCATTTTACCATGTCCT+CGG | + | tig0020715:99218-99237 | None:intergenic | 35.0% |
| ATGATGAACTAGGAGATGAA+AGG | + | tig0020715:99288-99307 | None:intergenic | 35.0% | |
| !! | ATTTCAACCATGGTGTTGTA+TGG | + | tig0020715:99445-99464 | None:intergenic | 35.0% |
| ACACCATGGTTGAAATATCA+TGG | - | tig0020715:99449-99468 | Msa1385180:CDS | 35.0% | |
| GATTAGAAGAAGTAGATCCA+GGG | - | tig0020715:99638-99657 | Msa1385180:CDS | 35.0% | |
| GATCAACATACACAATGCAT+TGG | - | tig0020715:99693-99712 | Msa1385180:intron | 35.0% | |
| TCTGTTCTTTGTCTTCTGAT+AGG | - | tig0020715:99813-99832 | Msa1385180:intron | 35.0% | |
| ! | TGTCTTCTGATAGGCATTTT+TGG | - | tig0020715:99822-99841 | Msa1385180:intron | 35.0% |
| !!! | TGATAGGCATTTTTGGCTTA+TGG | - | tig0020715:99829-99848 | Msa1385180:intron | 35.0% |
| ! | TTTGTTTGTTTGGTCTTTGC+AGG | - | tig0020715:99966-99985 | Msa1385180:CDS | 35.0% |
| TTTGGTATATGGAAGTGGTT+TGG | + | tig0020715:100092-100111 | None:intergenic | 35.0% | |
| CATGTCAGTCACTACATTAT+AGG | + | tig0020715:100174-100193 | None:intergenic | 35.0% | |
| CTATAATGTAGTGACTGACA+TGG | - | tig0020715:100172-100191 | Msa1385180:intron | 35.0% | |
| !! | AAACTTGCTTCCTTTTGTAG+TGG | - | tig0020715:100205-100224 | Msa1385180:intron | 35.0% |
| ACAAAATTCAAAACAGGAGC+TGG | - | tig0020715:100252-100271 | Msa1385180:intron | 35.0% | |
| CTTGTGTACAAATGGGAATT+AGG | + | tig0020715:100364-100383 | None:intergenic | 35.0% | |
| TGAATCATTCGCAAAAGACT+CGG | - | tig0020715:100677-100696 | Msa1385180:intron | 35.0% | |
| AATCTCTACCTGAATCACTA+AGG | - | tig0020715:100736-100755 | Msa1385180:intron | 35.0% | |
| ! | ACTCTTTTCCTTAGTGATTC+AGG | + | tig0020715:100747-100766 | None:intergenic | 35.0% |
| ! | AATCCAAGAAGTGCATTGAA+TGG | - | tig0020715:100787-100806 | Msa1385180:intron | 35.0% |
| AATCCATTCAATGCACTTCT+TGG | + | tig0020715:100793-100812 | None:intergenic | 35.0% | |
| ATTGTGTTGTGTTGTGATGT+CGG | - | tig0020715:100958-100977 | Msa1385180:intron | 35.0% | |
| ! | CACAAGTCACTTTGCATTTC+AGG | + | tig0020715:96663-96682 | None:intergenic | 40.0% |
| ! | CTATGGTTTTTGTGGCTTTC+AGG | - | tig0020715:96825-96844 | Msa1385180:three_prime_UTR | 40.0% |
| !! | GTTTTTGTGGCTTTCAGGTA+TGG | - | tig0020715:96830-96849 | Msa1385180:three_prime_UTR | 40.0% |
| AAACAACAGGTTTGAACCTC+AGG | + | tig0020715:97007-97026 | None:intergenic | 40.0% | |
| CTGTGTTTGCTCTTTCTATG+TGG | - | tig0020715:97125-97144 | Msa1385180:CDS | 40.0% | |
| AAGGCCTCAACATGATTATC+TGG | + | tig0020715:97191-97210 | None:intergenic | 40.0% | |
| GGCCTTTGATAGAATGAAGA+TGG | - | tig0020715:97205-97224 | Msa1385180:CDS | 40.0% | |
| TACAACCGAATGCGTATGTA+TGG | + | tig0020715:97323-97342 | None:intergenic | 40.0% | |
| ! | TCAGTGTCGTGTATTTCTGT+TGG | - | tig0020715:97456-97475 | Msa1385180:CDS | 40.0% |
| TATGTATCATGAGTGCCAAG+GGG | - | tig0020715:97512-97531 | Msa1385180:CDS | 40.0% | |
| ! | TCACTGACTGTGCTAAATCA+AGG | - | tig0020715:97775-97794 | Msa1385180:CDS | 40.0% |
| CACTATGGACTTCACCTTTA+GGG | + | tig0020715:97812-97831 | None:intergenic | 40.0% | |
| GCACCAAACCAATTATGATG+AGG | + | tig0020715:97863-97882 | None:intergenic | 40.0% | |
| TGCAATGCACCAAACAGAAA+AGG | + | tig0020715:97952-97971 | None:intergenic | 40.0% | |
| !! | TCCACTTTAGAAAAGGCACT+TGG | - | tig0020715:98146-98165 | Msa1385180:CDS | 40.0% |
| !! | TCCAAGTGCCTTTTCTAAAG+TGG | + | tig0020715:98150-98169 | None:intergenic | 40.0% |
| ATTTGAATGGACCAGTGATG+AGG | + | tig0020715:98180-98199 | None:intergenic | 40.0% | |
| TCCTTAATCAATTCTGTGGC+TGG | + | tig0020715:98319-98338 | None:intergenic | 40.0% | |
| ! | AATTGCGGTGTTAGAGTTAG+AGG | - | tig0020715:98339-98358 | Msa1385180:CDS | 40.0% |
| !!! | TCAGTTTTGGTTAAGACCTC+AGG | + | tig0020715:98508-98527 | None:intergenic | 40.0% |
| TTTACCTCCATCATGGACAA+TGG | + | tig0020715:98742-98761 | None:intergenic | 40.0% | |
| ! | TATCAACCTAAGGCTCTAGT+TGG | - | tig0020715:98953-98972 | Msa1385180:intron | 40.0% |
| GTATATCCAACTAGAGCCTT+AGG | + | tig0020715:98962-98981 | None:intergenic | 40.0% | |
| ATCAGTCTTGCTGAACATCT+CGG | - | tig0020715:99148-99167 | Msa1385180:CDS | 40.0% | |
| GGATCCAAATAAACTTTCCG+AGG | - | tig0020715:99198-99217 | Msa1385180:CDS | 40.0% | |
| GTTGTGGACAATGATGAACT+AGG | + | tig0020715:99298-99317 | None:intergenic | 40.0% | |
| ! | GGCTTTTCTATTGGAGATCA+AGG | - | tig0020715:99322-99341 | Msa1385180:CDS | 40.0% |
| GACAATCCTTTCCATGTTGA+AGG | - | tig0020715:99400-99419 | Msa1385180:CDS | 40.0% | |
| TTGAGTCCTTCAACATGGAA+AGG | + | tig0020715:99409-99428 | None:intergenic | 40.0% | |
| TTTCCATGTTGAAGGACTCA+AGG | - | tig0020715:99408-99427 | Msa1385180:CDS | 40.0% | |
| CGATTAGAAGAAGTAGATCC+AGG | - | tig0020715:99637-99656 | Msa1385180:CDS | 40.0% | |
| TTGCAGGCTGCATATAAAGT+TGG | - | tig0020715:99982-100001 | Msa1385180:CDS | 40.0% | |
| ! | ATGGAAGTGGTTTGGATCAT+AGG | + | tig0020715:100084-100103 | None:intergenic | 40.0% |
| ACAAACGTAGCCACTACAAA+AGG | + | tig0020715:100218-100237 | None:intergenic | 40.0% | |
| CATAGAGCAAAGTGTGAAAG+TGG | + | tig0020715:100309-100328 | None:intergenic | 40.0% | |
| TCACACTTTGCTCTATGTTC+AGG | - | tig0020715:100312-100331 | Msa1385180:intron | 40.0% | |
| AGCTGATGTCGCAAAATTTG+TGG | + | tig0020715:100420-100439 | None:intergenic | 40.0% | |
| GGACTACGACACTTAAAATC+CGG | + | tig0020715:100454-100473 | None:intergenic | 40.0% | |
| TACGTGCATATACACCAAAG+AGG | - | tig0020715:100562-100581 | Msa1385180:intron | 40.0% | |
| ACGTGCATATACACCAAAGA+GGG | - | tig0020715:100563-100582 | Msa1385180:CDS | 40.0% | |
| AGATCTTGAAACACCCTCTT+TGG | + | tig0020715:100579-100598 | None:intergenic | 40.0% | |
| !! | AAAGAGGGTGTTTCAAGATC+TGG | - | tig0020715:100578-100597 | Msa1385180:CDS | 40.0% |
| GAGTACATTCGAGCTACATT+AGG | - | tig0020715:100615-100634 | Msa1385180:CDS | 40.0% | |
| GCGAATGATTCAACAAGCTT+TGG | + | tig0020715:100669-100688 | None:intergenic | 40.0% | |
| GTGATTCAGGTAGAGATTCT+AGG | + | tig0020715:100734-100753 | None:intergenic | 40.0% | |
| GGTATGGGACTTGAAAAGTG+TGG | - | tig0020715:96846-96865 | Msa1385180:three_prime_UTR | 45.0% | |
| !!! | GTTGAATTTTTGGCTCCCCT+TGG | + | tig0020715:97530-97549 | None:intergenic | 45.0% |
| GCACTATGGACTTCACCTTT+AGG | + | tig0020715:97813-97832 | None:intergenic | 45.0% | |
| CCTCTTGCTTCATAGCACTA+TGG | + | tig0020715:97827-97846 | None:intergenic | 45.0% | |
| CCATAGTGCTATGAAGCAAG+AGG | - | tig0020715:97824-97843 | Msa1385180:intron | 45.0% | |
| TGGCAAAAAGTCACACTCAG+AGG | + | tig0020715:98003-98022 | None:intergenic | 45.0% | |
| TGGAAACACATCCTCATCAC+TGG | - | tig0020715:98166-98185 | Msa1385180:intron | 45.0% | |
| GCCAGCCACAGAATTGATTA+AGG | - | tig0020715:98315-98334 | Msa1385180:CDS | 45.0% | |
| ACAGTTTCCTCCTTGGTAGA+TGG | + | tig0020715:98436-98455 | None:intergenic | 45.0% | |
| !! | AATGGTGCTTGAGGTGTTGT+CGG | + | tig0020715:98469-98488 | None:intergenic | 45.0% |
| ! | GGCATAGAAGGTGTAACCAA+TGG | + | tig0020715:98487-98506 | None:intergenic | 45.0% |
| GTTAAGACCTCAGGCATAGA+AGG | + | tig0020715:98499-98518 | None:intergenic | 45.0% | |
| GACTGGATTTACCTCCATCA+TGG | + | tig0020715:98749-98768 | None:intergenic | 45.0% | |
| TGGAGGTAAATCCAGTCTCA+TGG | - | tig0020715:98752-98771 | Msa1385180:intron | 45.0% | |
| GAAAGGCCAGGATGTATCAT+AGG | + | tig0020715:99271-99290 | None:intergenic | 45.0% | |
| TCATCATTGTCCACAACGAG+CGG | - | tig0020715:99301-99320 | Msa1385180:CDS | 45.0% | |
| AATAGAAAAGCCGCTCGTTG+TGG | + | tig0020715:99314-99333 | None:intergenic | 45.0% | |
| ! | ACAACGAGCGGCTTTTCTAT+TGG | - | tig0020715:99313-99332 | Msa1385180:CDS | 45.0% |
| TTGGAGATCAAGGCGATATG+TGG | - | tig0020715:99332-99351 | Msa1385180:CDS | 45.0% | |
| ACTCCTTGAGTCCTTCAACA+TGG | + | tig0020715:99414-99433 | None:intergenic | 45.0% | |
| GAAGGACTCAAGGAGTTTAG+TGG | - | tig0020715:99418-99437 | Msa1385180:CDS | 45.0% | |
| ! | TAGTGGACCATACAACACCA+TGG | - | tig0020715:99435-99454 | Msa1385180:CDS | 45.0% |
| AGAAGTAGATCCAGGGAAGT+TGG | - | tig0020715:99645-99664 | Msa1385180:CDS | 45.0% | |
| !! | ATGAGGAGAAGCTAGCTTTC+TGG | - | tig0020715:99671-99690 | Msa1385180:intron | 45.0% |
| CAGGCTGCATATAAAGTTGG+AGG | - | tig0020715:99985-100004 | Msa1385180:CDS | 45.0% | |
| ATCATAGGATTCACCTGTCC+GGG | + | tig0020715:100069-100088 | None:intergenic | 45.0% | |
| GATCATAGGATTCACCTGTC+CGG | + | tig0020715:100070-100089 | None:intergenic | 45.0% | |
| TGGACGACAAGCATATGCAT+TGG | - | tig0020715:100272-100291 | Msa1385180:intron | 45.0% | |
| AGGAAACCATTCTGATCCAG+CGG | - | tig0020715:100332-100351 | Msa1385180:intron | 45.0% | |
| AGAATACCGCTGGATCAGAA+TGG | + | tig0020715:100341-100360 | None:intergenic | 45.0% | |
| AGCTACATTAGGCGTACGAA+AGG | - | tig0020715:100626-100645 | Msa1385180:intron | 45.0% | |
| ! | TTTGTGTCCTAGTGGTGTCA+TGG | - | tig0020715:100701-100720 | Msa1385180:intron | 45.0% |
| ATCATGTCCATGACACCACT+AGG | + | tig0020715:100711-100730 | None:intergenic | 45.0% | |
| !!! | TCTTTATAATTTTATTTTTT+TGG | + | tig0020715:100110-100129 | None:intergenic | 5.0% |
| CTGTTTGAACGGTTGTGCCT+TGG | + | tig0020715:96903-96922 | None:intergenic | 50.0% | |
| CAAGGCACAACCGTTCAAAC+AGG | - | tig0020715:96901-96920 | Msa1385180:three_prime_UTR | 50.0% | |
| GTTGTGTGTGGGGGACTATA+AGG | + | tig0020715:97701-97720 | None:intergenic | 50.0% | |
| TTCGGCATCTCCATCTACCA+AGG | - | tig0020715:98423-98442 | Msa1385180:CDS | 50.0% | |
| GACAACACCTCAAGCACCAT+TGG | - | tig0020715:98468-98487 | Msa1385180:CDS | 50.0% | |
| GGTGTAACCAATGGTGCTTG+AGG | + | tig0020715:98478-98497 | None:intergenic | 50.0% | |
| GGTTACACCTTCTATGCCTG+AGG | - | tig0020715:98489-98508 | Msa1385180:CDS | 50.0% | |
| TTCGCAGCCATTGTCCATGA+TGG | - | tig0020715:98732-98751 | Msa1385180:intron | 50.0% | |
| GACCCTCCTATGATACATCC+TGG | - | tig0020715:99262-99281 | Msa1385180:CDS | 50.0% | |
| GGCCAGGATGTATCATAGGA+GGG | + | tig0020715:99267-99286 | None:intergenic | 50.0% | |
| AGGCCAGGATGTATCATAGG+AGG | + | tig0020715:99268-99287 | None:intergenic | 50.0% | |
| GAACTAGGAGATGAAAGGCC+AGG | + | tig0020715:99283-99302 | None:intergenic | 50.0% | |
| AAGGCGATATGTGGAGTCCA+AGG | - | tig0020715:99341-99360 | Msa1385180:CDS | 50.0% | |
| TCCAGGGAAGTTGGAACATG+AGG | - | tig0020715:99654-99673 | Msa1385180:CDS | 50.0% | |
| TCCTCATGTTCCAACTTCCC+TGG | + | tig0020715:99658-99677 | None:intergenic | 50.0% | |
| TCATAGGATTCACCTGTCCG+GGG | + | tig0020715:100068-100087 | None:intergenic | 50.0% | |
| GGGAATTAGGAGAATACCGC+TGG | + | tig0020715:100351-100370 | None:intergenic | 50.0% | |
| GACTCGGATTTGTGTCCTAG+TGG | - | tig0020715:100693-100712 | Msa1385180:intron | 50.0% | |
| GTCCACTGTCTGACACGTGT+CGG | - | tig0020715:97369-97388 | Msa1385180:intron | 55.0% | |
| GGCATCTCCATCTACCAAGG+AGG | - | tig0020715:98426-98445 | Msa1385180:CDS | 55.0% | |
| GCAGCCATTGTCCATGATGG+AGG | - | tig0020715:98735-98754 | Msa1385180:intron | 55.0% | |
| CACCGACACGTGTCAGACAG+TGG | + | tig0020715:97374-97393 | None:intergenic | 60.0% | |
| !! | AGGTGTCGAATGTCTCGCCC+CGG | - | tig0020715:100048-100067 | Msa1385180:intron | 60.0% |
| TCGAATGTCTCGCCCCGGAC+AGG | - | tig0020715:100053-100072 | Msa1385180:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020715 | gene | 96639 | 101150 | 96639 | ID=Msa1385180;Name=Msa1385180 |
| tig0020715 | mRNA | 96639 | 101150 | 96639 | ID=Msa1385180-mRNA-1;Parent=Msa1385180;Name=Msa1385180-mRNA-1;_AED=0.23;_eAED=0.25;_QI=0|0.83|0.76|1|0.91|0.84|13|253|622 |
| tig0020715 | exon | 96639 | 96698 | 96639 | ID=Msa1385180-mRNA-1:exon:9491;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 96733 | 97228 | 96733 | ID=Msa1385180-mRNA-1:exon:9490;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 97436 | 97564 | 97436 | ID=Msa1385180-mRNA-1:exon:9489;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 97715 | 97801 | 97715 | ID=Msa1385180-mRNA-1:exon:9488;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 97895 | 97954 | 97895 | ID=Msa1385180-mRNA-1:exon:9487;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 98066 | 98165 | 98066 | ID=Msa1385180-mRNA-1:exon:9486;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 98262 | 98636 | 98262 | ID=Msa1385180-mRNA-1:exon:9485;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 99046 | 99473 | 99046 | ID=Msa1385180-mRNA-1:exon:9484;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 99572 | 99688 | 99572 | ID=Msa1385180-mRNA-1:exon:9483;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 99944 | 100027 | 99944 | ID=Msa1385180-mRNA-1:exon:9482;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 100563 | 100638 | 100563 | ID=Msa1385180-mRNA-1:exon:9481;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 100867 | 100942 | 100867 | ID=Msa1385180-mRNA-1:exon:9480;Parent=Msa1385180-mRNA-1 |
| tig0020715 | exon | 101117 | 101150 | 101117 | ID=Msa1385180-mRNA-1:exon:9479;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 101117 | 101150 | 101117 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 100867 | 100942 | 100867 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 100563 | 100638 | 100563 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 99944 | 100027 | 99944 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 99572 | 99688 | 99572 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 99046 | 99473 | 99046 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 98262 | 98636 | 98262 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 98066 | 98165 | 98066 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 97895 | 97954 | 97895 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 97715 | 97801 | 97715 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 97436 | 97564 | 97436 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | CDS | 96926 | 97228 | 96926 | ID=Msa1385180-mRNA-1:cds;Parent=Msa1385180-mRNA-1 |
| tig0020715 | three_prime_UTR | 96733 | 96925 | 96733 | ID=Msa1385180-mRNA-1:three_prime_utr;Parent=Msa1385180-mRNA-1 |
| tig0020715 | three_prime_UTR | 96639 | 96698 | 96639 | ID=Msa1385180-mRNA-1:three_prime_utr;Parent=Msa1385180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
