AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0529030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529030 MtrunA17_Chr1g0187121 93.995 383 22 1 1 382 1 383 0.0 734
Msa0529030 MtrunA17_Chr1g0190551 43.023 258 133 6 61 313 45 293 9.70e-45 158
Msa0529030 MtrunA17_Chr7g0274281 58.993 139 53 1 179 317 178 312 1.55e-33 128
Msa0529030 MtrunA17_Chr7g0267791 54.198 131 54 3 185 315 213 337 4.78e-31 122
Msa0529030 MtrunA17_Chr1g0149361 53.913 115 48 2 217 331 229 338 1.00e-29 119
Msa0529030 MtrunA17_Chr3g0137761 60.870 92 36 0 217 308 212 303 7.86e-29 116
Msa0529030 MtrunA17_Chr1g0176611 60.194 103 39 2 213 315 231 331 1.01e-27 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529030 AT3G23090.1 49.701 334 128 8 7 333 2 302 8.05e-83 256
Msa0529030 AT3G23090.4 49.701 334 128 8 7 333 38 338 1.86e-82 256
Msa0529030 AT3G23090.5 49.401 334 129 8 7 333 3 303 6.00e-82 254
Msa0529030 AT3G23090.2 49.112 338 128 9 7 333 2 306 3.51e-81 252
Msa0529030 AT3G23090.3 49.112 338 128 9 7 333 38 342 6.98e-81 253
Msa0529030 AT1G54460.1 48.551 276 106 11 63 335 40 282 3.27e-61 201
Msa0529030 AT3G04630.3 60.993 141 52 2 168 305 82 222 3.09e-50 171
Msa0529030 AT3G04630.1 60.993 141 52 2 168 305 78 218 3.15e-50 171
Msa0529030 AT3G04630.2 62.222 135 49 1 173 305 83 217 5.16e-50 170
Msa0529030 AT5G28646.2 54.194 155 62 3 162 314 40 187 3.86e-41 144
Msa0529030 AT5G28646.1 54.194 155 62 3 162 314 40 187 3.86e-41 144
Msa0529030 AT5G28646.3 58.647 133 49 2 184 314 55 183 1.65e-40 142
Msa0529030 AT2G35880.3 57.143 133 54 2 178 310 210 339 2.94e-33 129
Msa0529030 AT2G35880.2 57.143 133 54 2 178 310 210 339 2.94e-33 129
Msa0529030 AT2G35880.1 57.143 133 54 2 178 310 210 339 2.94e-33 129
Msa0529030 AT4G32330.1 54.098 122 56 0 189 310 180 301 7.90e-31 122
Msa0529030 AT4G32330.4 54.098 122 56 0 189 310 180 301 7.90e-31 122
Msa0529030 AT4G32330.3 54.098 122 56 0 189 310 180 301 7.90e-31 122
Msa0529030 AT4G32330.2 61.702 94 36 0 217 310 207 300 1.83e-30 121
Msa0529030 AT2G25480.2 58.416 101 41 1 217 317 184 283 1.81e-27 112
Msa0529030 AT2G25480.1 58.416 101 41 1 217 317 183 282 1.86e-27 112
Msa0529030 AT1G70950.1 50.617 81 40 0 218 298 330 410 4.05e-16 80.1

Find 103 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCAATAGTTTGTTATTA+AGG 0.161776 4_1:+2020625 Msa0529030:three_prime_UTR
GTCACATTGTTTGAAGTTAT+TGG 0.185251 4_1:+2020561 Msa0529030:three_prime_UTR
ATCTCAAGTTATTTGTAAAA+AGG 0.213581 4_1:+2020480 Msa0529030:three_prime_UTR
GATTCATGTTCAGTTGCTTC+TGG 0.221500 4_1:+2019032 Msa0529030:CDS
TTTCTGTCTGCCTCAACTTC+AGG 0.221974 4_1:+2020538 Msa0529030:three_prime_UTR
CTCTTTCGCCGACCCAGTTT+TGG 0.233302 4_1:-2020057 None:intergenic
TCTGAATGTTTCTTGTTATC+AGG 0.235516 4_1:-2019002 None:intergenic
ATGACTCACATTTAGAGTTT+TGG 0.250804 4_1:-2017315 None:intergenic
AGAAAGTGCTTATAAGTTAA+AGG 0.253991 4_1:-2020410 None:intergenic
ATCATAGAGAATCTTATTTC+AGG 0.276186 4_1:-2020664 None:intergenic
ACTTCTAATTTATGAGTTTC+CGG 0.286282 4_1:+2020336 Msa0529030:three_prime_UTR
GATGGAATTTCGCACAATTC+AGG 0.294711 4_1:+2018395 Msa0529030:CDS
ACGTGCAAAATCTCCAAAAC+TGG 0.305226 4_1:+2020044 Msa0529030:CDS
ATGCAATAGTTTGTTATTAA+GGG 0.313028 4_1:+2020626 Msa0529030:three_prime_UTR
ATTAATTTCTTCAATTAATT+CGG 0.315412 4_1:-2020241 None:intergenic
CTTTCAGTTGCTAGGGAAAA+TGG 0.316077 4_1:-2018698 None:intergenic
AATCTCATTGAAGACTTTAC+TGG 0.317150 4_1:-2020305 None:intergenic
ACTCCTCCTCAACTGTTTGA+TGG 0.328938 4_1:-2019556 None:intergenic
TCTGAAGGGGTCAAAGAAAA+AGG 0.336391 4_1:+2020102 Msa0529030:CDS
TTGCTTCTGCTCCAAGCTTT+CGG 0.336692 4_1:+2019227 Msa0529030:CDS
ACCTTCTTCAAGTCAACTTT+AGG 0.339340 4_1:-2019630 None:intergenic
CTTCTAATTTATGAGTTTCC+GGG 0.356248 4_1:+2020337 Msa0529030:three_prime_UTR
TTCTGTCTGCCTCAACTTCA+GGG 0.362550 4_1:+2020539 Msa0529030:three_prime_UTR
CATATTGTGATTATCAGTTC+CGG 0.379451 4_1:-2018426 None:intergenic
CGGAACTGATAATCACAATA+TGG 0.387299 4_1:+2018427 Msa0529030:CDS
AACGGTTTCCTTGGAACTAA+AGG 0.390764 4_1:-2018975 None:intergenic
AATAATGATGTTCAGTGAAC+AGG 0.391655 4_1:+2020586 Msa0529030:three_prime_UTR
ATTCATGTTCAGTTGCTTCT+GGG 0.401381 4_1:+2019033 Msa0529030:CDS
TTGTTATCTTCTTCAAAAGT+AGG 0.404232 4_1:-2018743 None:intergenic
TTGAGAACACCCTCAAAATC+TGG 0.409193 4_1:-2018599 None:intergenic
TTCAATTAATTCGGTGTGCT+CGG 0.412792 4_1:-2020232 None:intergenic
GAAGATAACAAGGGCGGTAA+TGG 0.429080 4_1:+2018755 Msa0529030:CDS
TAATACGCTTAAACAGAATC+AGG 0.429313 4_1:+2018814 Msa0529030:CDS
CTGTGAGGTCTTTCAAGTCC+AGG 0.430512 4_1:+2019197 Msa0529030:CDS
TCATAGAGAATCTTATTTCA+GGG 0.431405 4_1:-2020663 None:intergenic
TGATGAGTTTGTGAATTACT+AGG 0.440371 4_1:-2017244 None:intergenic
TGAAATAAGATTCTCTATGA+TGG 0.444022 4_1:+2020666 Msa0529030:three_prime_UTR
AAGGAAATTCTATTGCTCAT+AGG 0.446691 4_1:+2020499 Msa0529030:three_prime_UTR
TCAGGTTTCAACGGTTTCCT+TGG 0.446814 4_1:-2018984 None:intergenic
CACAATTCAGGTCATGAAAC+CGG 0.449746 4_1:+2018407 Msa0529030:CDS
TCTTTGTTATATAGTGCAAT+GGG 0.450750 4_1:+2018314 Msa0529030:intron
AGAAGTTTCTGTTAAGGCCT+CGG 0.454828 4_1:+2018538 Msa0529030:CDS
TTCTTTGTTATATAGTGCAA+TGG 0.455351 4_1:+2018313 Msa0529030:intron
ATTTATGAGTTTCCGGGGAA+TGG 0.455619 4_1:+2020343 Msa0529030:three_prime_UTR
TGTTCCTTGCAACTTTCTGA+AGG 0.459969 4_1:+2020372 Msa0529030:three_prime_UTR
CACATCACTCAAGTTACAAC+TGG 0.463926 4_1:-2020160 None:intergenic
TACAACAGAAGTTTCTGTTA+AGG 0.465193 4_1:+2018532 Msa0529030:CDS
CGTTCAGTCGACCGAAAGCT+TGG 0.469154 4_1:-2019238 None:intergenic
ATTAATATGATCAAAGTGAA+TGG 0.469665 4_1:+2020258 Msa0529030:CDS
TTCAAGTCAACTTTAGGTGG+AGG 0.483139 4_1:-2019624 None:intergenic
TTCAGATATTTGTATCATCA+AGG 0.486869 4_1:+2018346 Msa0529030:CDS
ATCGATTAAGGAAGAGAAAG+AGG 0.493171 4_1:+2019530 Msa0529030:intron
TGAAGTCTCCTTTAGTTCCA+AGG 0.494501 4_1:+2018967 Msa0529030:CDS
ATAGTTTGTTATTAAGGGAA+AGG 0.495055 4_1:+2020631 Msa0529030:three_prime_UTR
TTCTTCAAGTCAACTTTAGG+TGG 0.500721 4_1:-2019627 None:intergenic
GTTCCTTGCAACTTTCTGAA+GGG 0.511117 4_1:+2020373 Msa0529030:three_prime_UTR
AGCAGAAGCAACAGTTGCCC+TGG 0.512471 4_1:-2019215 None:intergenic
GAATAGACTACAACACGATC+TGG 0.520100 4_1:-2018371 None:intergenic
GTTCGAAACCGCACAAAACA+AGG 0.521164 4_1:+2018630 Msa0529030:CDS
TCGTGGTAAAAGCTTGGCAT+AGG 0.526747 4_1:-2019597 None:intergenic
AGCACGCCTTTCAGTTGCTA+GGG 0.527177 4_1:-2018705 None:intergenic
GAAAATGGTCGCGGAACTGT+AGG 0.532713 4_1:-2018683 None:intergenic
GGCCCCTCGTGGTAAAAGCT+TGG 0.537816 4_1:-2019603 None:intergenic
GTGCAGCTAATTCATCTGAA+GGG 0.542207 4_1:+2020088 Msa0529030:CDS
TAGCACGCCTTTCAGTTGCT+AGG 0.543009 4_1:-2018706 None:intergenic
TGTGAGGTCTTTCAAGTCCA+GGG 0.549601 4_1:+2019198 Msa0529030:CDS
ACTAACGACAATGGCTTGGA+TGG 0.551118 4_1:+2020183 Msa0529030:CDS
TTCTTGTTATCAGGTTTCAA+CGG 0.554280 4_1:-2018993 None:intergenic
CGTGGTAAAAGCTTGGCATA+GGG 0.555406 4_1:-2019596 None:intergenic
AGAGGAAAAGCAACAAGCAA+TGG 0.560439 4_1:+2019379 Msa0529030:CDS
GGTGCAGCTAATTCATCTGA+AGG 0.565625 4_1:+2020087 Msa0529030:CDS
TGAACGCGCACAAAGAAGAA+AGG 0.565933 4_1:+2019255 Msa0529030:CDS
CACAAAGGAATACGAGGTGA+AGG 0.571994 4_1:+2018505 Msa0529030:CDS
ACCTAAAGTTGACTTGAAGA+AGG 0.572341 4_1:+2019629 Msa0529030:CDS
TGTGACTAACGACAATGGCT+TGG 0.576886 4_1:+2020179 Msa0529030:CDS
ATCAAAGTGAATGGACAAGC+GGG 0.577317 4_1:+2020267 Msa0529030:CDS
CGTGCAAAATCTCCAAAACT+GGG 0.584227 4_1:+2020045 Msa0529030:CDS
AAGCCATCAAACAGTTGAGG+AGG 0.591790 4_1:+2019553 Msa0529030:CDS
TTCTAATTTATGAGTTTCCG+GGG 0.592283 4_1:+2020338 Msa0529030:three_prime_UTR
ACAATGTGACCCTGAAGTTG+AGG 0.592428 4_1:-2020548 None:intergenic
CGTGTTGTAGTCTATTCCGA+TGG 0.596110 4_1:+2018377 Msa0529030:CDS
AGGAAGCCATCAAACAGTTG+AGG 0.603449 4_1:+2019550 Msa0529030:CDS
GGAACAATACTTCCATTCCC+CGG 0.605392 4_1:-2020355 None:intergenic
TCAAAATGAAGCAAGGAGCA+AGG 0.605637 4_1:+2019415 Msa0529030:CDS
TTCGAAACCGCACAAAACAA+GGG 0.608167 4_1:+2018631 Msa0529030:CDS
TGAATTGTGCGAAATTCCAT+CGG 0.608447 4_1:-2018393 None:intergenic
AGAAGAATCAAAATGAAGCA+AGG 0.613159 4_1:+2019408 Msa0529030:CDS
CAAAATCTCCAAAACTGGGT+CGG 0.613811 4_1:+2020049 Msa0529030:CDS
TGCAGCTAATTCATCTGAAG+GGG 0.619271 4_1:+2020089 Msa0529030:CDS
GTTGCTAGGGAAAATGGTCG+CGG 0.629133 4_1:-2018692 None:intergenic
TCGAAACCGCACAAAACAAG+GGG 0.655229 4_1:+2018632 Msa0529030:CDS
GATCAAAGTGAATGGACAAG+CGG 0.657804 4_1:+2020266 Msa0529030:CDS
ACACCCTTCAGAAAGTTGCA+AGG 0.664952 4_1:-2020376 None:intergenic
TTTGAAGAAGATAACAAGGG+CGG 0.669853 4_1:+2018749 Msa0529030:CDS
CTTTAGGTGGAGGCCCCTCG+TGG 0.681265 4_1:-2019614 None:intergenic
AGAGAGCACAAAGGAATACG+AGG 0.687992 4_1:+2018499 Msa0529030:CDS
GTAGGCTTGACAGTATCTCG+TGG 0.692488 4_1:-2018665 None:intergenic
ACGCGCACAAAGAAGAAAGG+AGG 0.694653 4_1:+2019258 Msa0529030:CDS
AAAGAACTGCAACTTCTGTG+AGG 0.704237 4_1:+2019182 Msa0529030:intron
GGTCGGCGAAAGAGCAACAG+CGG 0.709755 4_1:+2020066 Msa0529030:CDS
TAGTTCAGAAGAGAGCACAA+AGG 0.711655 4_1:+2018490 Msa0529030:CDS
AGTGATGTGACTAACGACAA+TGG 0.713243 4_1:+2020174 Msa0529030:CDS
TAACAAGAAACATTCAGACG+AGG 0.732280 4_1:+2019007 Msa0529030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATTTATACTAAG+TGG - chr4_1:2017617-2017636 None:intergenic 10.0%
!! ATTAATTTCTTCAATTAATT+CGG - chr4_1:2020244-2020263 None:intergenic 10.0%
!! TTGTTCAAAAAACAATAAAA+GGG - chr4_1:2017456-2017475 None:intergenic 15.0%
!! TTTGTTCAAAAAACAATAAA+AGG - chr4_1:2017457-2017476 None:intergenic 15.0%
!!! TTTATTGTTTTTTGAACAAA+TGG + chr4_1:2017457-2017476 Msa0529030:intron 15.0%
!! ATTAAATTTATATACACGTT+TGG + chr4_1:2018003-2018022 Msa0529030:intron 15.0%
!! TTAAATTTATATACACGTTT+GGG + chr4_1:2018004-2018023 Msa0529030:intron 15.0%
!!! ATAGTTTTATTCAAAATTAG+AGG + chr4_1:2019361-2019380 Msa0529030:intron 15.0%
!!! ACTATTTATTTTTCCTATAC+TGG - chr4_1:2017500-2017519 None:intergenic 20.0%
!! ATAAATTTATACTAAGTGGT+TGG - chr4_1:2017613-2017632 None:intergenic 20.0%
!! AAAAGGAAAGTAATCAAATT+GGG - chr4_1:2017746-2017765 None:intergenic 20.0%
!!! TAGTTTTTCTTAACTTAGTT+AGG + chr4_1:2017774-2017793 Msa0529030:intron 20.0%
!!! TAGGTTTTTTAATCAATCTT+TGG + chr4_1:2017898-2017917 Msa0529030:intron 20.0%
!! TTGAAATAATCTTTCAGAAA+TGG - chr4_1:2018085-2018104 None:intergenic 20.0%
!!! TTTTATAAAATGGACTGTAT+AGG - chr4_1:2018116-2018135 None:intergenic 20.0%
!!! ACTCAAGTGATTTTATAAAA+TGG - chr4_1:2018126-2018145 None:intergenic 20.0%
!! AGAAAAACAAAATCTTACAT+AGG - chr4_1:2018199-2018218 None:intergenic 20.0%
!! AAACTATAGCACAAATAAAA+AGG - chr4_1:2019348-2019367 None:intergenic 20.0%
!! CAAAATGACAATGTAATTTA+TGG - chr4_1:2019471-2019490 None:intergenic 20.0%
!!! TTTGACTTCATTTTATCTTT+TGG - chr4_1:2019752-2019771 None:intergenic 20.0%
!! ATTAATATGATCAAAGTGAA+TGG + chr4_1:2020258-2020277 Msa0529030:CDS 20.0%
!! ATCTCAAGTTATTTGTAAAA+AGG + chr4_1:2020480-2020499 Msa0529030:three_prime_UTR 20.0%
!!! ATGCAATAGTTTGTTATTAA+GGG + chr4_1:2020626-2020645 Msa0529030:three_prime_UTR 20.0%
!!! TTTTGGATCTGGAATAATAA+TGG - chr4_1:2017301-2017320 None:intergenic 25.0%
! TTGATGCATGAAAATGTAAA+GGG - chr4_1:2017350-2017369 None:intergenic 25.0%
! TTTGATGCATGAAAATGTAA+AGG - chr4_1:2017351-2017370 None:intergenic 25.0%
!! ATTGTTGATGTTTGTTAATC+AGG + chr4_1:2017419-2017438 Msa0529030:intron 25.0%
! GAAAAGGAAAGTAATCAAAT+TGG - chr4_1:2017747-2017766 None:intergenic 25.0%
! GAAAAACTAAAACACAGAAA+AGG - chr4_1:2017763-2017782 None:intergenic 25.0%
! AGAATATTCTCTTATCTTCT+AGG + chr4_1:2017968-2017987 Msa0529030:intron 25.0%
! GAATATTCTCTTATCTTCTA+GGG + chr4_1:2017969-2017988 Msa0529030:intron 25.0%
! AATTAAAGAATGCTTCCAAA+GGG - chr4_1:2018153-2018172 None:intergenic 25.0%
! AAATTAAAGAATGCTTCCAA+AGG - chr4_1:2018154-2018173 None:intergenic 25.0%
!! TTCTTTGTTATATAGTGCAA+TGG + chr4_1:2018313-2018332 Msa0529030:intron 25.0%
!! TCTTTGTTATATAGTGCAAT+GGG + chr4_1:2018314-2018333 Msa0529030:intron 25.0%
! TTCAGATATTTGTATCATCA+AGG + chr4_1:2018346-2018365 Msa0529030:CDS 25.0%
! ATCTAACCTAAAAAAAAGTG+AGG + chr4_1:2018565-2018584 Msa0529030:CDS 25.0%
! TTGTTATCTTCTTCAAAAGT+AGG - chr4_1:2018746-2018765 None:intergenic 25.0%
!!! TACTTTTGAAGAAGATAACA+AGG + chr4_1:2018745-2018764 Msa0529030:CDS 25.0%
!!! ACTTTTGAAGAAGATAACAA+GGG + chr4_1:2018746-2018765 Msa0529030:CDS 25.0%
! TTATAAACCTTATAGTCGAA+GGG + chr4_1:2019063-2019082 Msa0529030:intron 25.0%
!!! TTAAGTAGCTTTGTTTCAAT+AGG + chr4_1:2019294-2019313 Msa0529030:intron 25.0%
!!! TAAGTAGCTTTGTTTCAATA+GGG + chr4_1:2019295-2019314 Msa0529030:intron 25.0%
!!! TCTAATTTGTTCATCGATTA+AGG + chr4_1:2019518-2019537 Msa0529030:intron 25.0%
! TAATTGAGTGGTTATCATAT+AGG + chr4_1:2019701-2019720 Msa0529030:intron 25.0%
! AATGACAATGTTAACATGTA+TGG + chr4_1:2020006-2020025 Msa0529030:intron 25.0%
! ACTTCTAATTTATGAGTTTC+CGG + chr4_1:2020336-2020355 Msa0529030:three_prime_UTR 25.0%
!!! AGAAAGTGCTTATAAGTTAA+AGG - chr4_1:2020413-2020432 None:intergenic 25.0%
!!! CATGCAATAGTTTGTTATTA+AGG + chr4_1:2020625-2020644 Msa0529030:three_prime_UTR 25.0%
!!! ATAGTTTGTTATTAAGGGAA+AGG + chr4_1:2020631-2020650 Msa0529030:three_prime_UTR 25.0%
!! TCATAGAGAATCTTATTTCA+GGG - chr4_1:2020666-2020685 None:intergenic 25.0%
!! ATCATAGAGAATCTTATTTC+AGG - chr4_1:2020667-2020686 None:intergenic 25.0%
! TGAAATAAGATTCTCTATGA+TGG + chr4_1:2020666-2020685 Msa0529030:three_prime_UTR 25.0%
TGATGAGTTTGTGAATTACT+AGG - chr4_1:2017247-2017266 None:intergenic 30.0%
!! ATGACTCACATTTAGAGTTT+TGG - chr4_1:2017318-2017337 None:intergenic 30.0%
CTTAGAAGGAAAGAAAAAAG+TGG - chr4_1:2017376-2017395 None:intergenic 30.0%
TTTGTTAATCAGGTTCAGTT+TGG + chr4_1:2017429-2017448 Msa0529030:intron 30.0%
AACAATATGATTAACCGACA+AGG - chr4_1:2017667-2017686 None:intergenic 30.0%
! CTTAGTTAGGTAGACAATTT+TGG + chr4_1:2017787-2017806 Msa0529030:intron 30.0%
! GCTAACAACTTCAATACTTT+TGG + chr4_1:2017855-2017874 Msa0529030:intron 30.0%
AAAAAACCTAAGTAATGAGC+AGG - chr4_1:2017888-2017907 None:intergenic 30.0%
! AGTTGCTTTCAACTAAAAAG+TGG - chr4_1:2017934-2017953 None:intergenic 30.0%
CTTACATAGGTACAAATTCA+AGG - chr4_1:2018186-2018205 None:intergenic 30.0%
CATATTGTGATTATCAGTTC+CGG - chr4_1:2018429-2018448 None:intergenic 30.0%
TACAACAGAAGTTTCTGTTA+AGG + chr4_1:2018532-2018551 Msa0529030:CDS 30.0%
!!! ACTTCTCCTCACTTTTTTTT+AGG - chr4_1:2018574-2018593 None:intergenic 30.0%
TAATACGCTTAAACAGAATC+AGG + chr4_1:2018814-2018833 Msa0529030:CDS 30.0%
AATAGATTAGACAATGAAGG+AGG - chr4_1:2018864-2018883 None:intergenic 30.0%
AGCAATAGATTAGACAATGA+AGG - chr4_1:2018867-2018886 None:intergenic 30.0%
ATCTATTGCTGAACTGTTTA+TGG + chr4_1:2018877-2018896 Msa0529030:intron 30.0%
! TTCTTGTTATCAGGTTTCAA+CGG - chr4_1:2018996-2019015 None:intergenic 30.0%
! TCTGAATGTTTCTTGTTATC+AGG - chr4_1:2019005-2019024 None:intergenic 30.0%
CTTATAAACCTTATAGTCGA+AGG + chr4_1:2019062-2019081 Msa0529030:intron 30.0%
AGAAGAATCAAAATGAAGCA+AGG + chr4_1:2019408-2019427 Msa0529030:CDS 30.0%
AGAGATTTCTTCATTATCTC+AGG + chr4_1:2019443-2019462 Msa0529030:intron 30.0%
CAAATTAGAGTGAGAAAACT+AGG - chr4_1:2019507-2019526 None:intergenic 30.0%
! TTAAGTTGTTTATCCCAACA+GGG - chr4_1:2019684-2019703 None:intergenic 30.0%
! ATTAAGTTGTTTATCCCAAC+AGG - chr4_1:2019685-2019704 None:intergenic 30.0%
GGATAAACAACTTAATTGAG+TGG + chr4_1:2019689-2019708 Msa0529030:intron 30.0%
TCAGACATGATACTGTTATA+AGG - chr4_1:2019868-2019887 None:intergenic 30.0%
TTATAACAGTATCATGTCTG+AGG + chr4_1:2019867-2019886 Msa0529030:intron 30.0%
AATCTCATTGAAGACTTTAC+TGG - chr4_1:2020308-2020327 None:intergenic 30.0%
CTTCTAATTTATGAGTTTCC+GGG + chr4_1:2020337-2020356 Msa0529030:three_prime_UTR 30.0%
TTCTAATTTATGAGTTTCCG+GGG + chr4_1:2020338-2020357 Msa0529030:three_prime_UTR 30.0%
AAGGAAATTCTATTGCTCAT+AGG + chr4_1:2020499-2020518 Msa0529030:three_prime_UTR 30.0%
! GTCACATTGTTTGAAGTTAT+TGG + chr4_1:2020561-2020580 Msa0529030:three_prime_UTR 30.0%
AATAATGATGTTCAGTGAAC+AGG + chr4_1:2020586-2020605 Msa0529030:three_prime_UTR 30.0%
!!! CACATTTAGAGTTTTGGATC+TGG - chr4_1:2017312-2017331 None:intergenic 35.0%
AGAACATGCTAGATCTTAGA+AGG - chr4_1:2017390-2017409 None:intergenic 35.0%
TTGAACAAATGGTTCTTGCA+TGG + chr4_1:2017468-2017487 Msa0529030:intron 35.0%
TCTAGTGTATGATACCTTGT+CGG + chr4_1:2017650-2017669 Msa0529030:intron 35.0%
GGAAAGTAATCAAATTGGGT+TGG - chr4_1:2017742-2017761 None:intergenic 35.0%
ATTTGTCCTGCTCATTACTT+AGG + chr4_1:2017879-2017898 Msa0529030:intron 35.0%
AACTAAAAAGTGGAACCATG+GGG - chr4_1:2017924-2017943 None:intergenic 35.0%
CAACTAAAAAGTGGAACCAT+GGG - chr4_1:2017925-2017944 None:intergenic 35.0%
TCAACTAAAAAGTGGAACCA+TGG - chr4_1:2017926-2017945 None:intergenic 35.0%
ATCACTTGAGTAAAACCCTT+TGG + chr4_1:2018135-2018154 Msa0529030:intron 35.0%
TGAATTGTGCGAAATTCCAT+CGG - chr4_1:2018396-2018415 None:intergenic 35.0%
CGGAACTGATAATCACAATA+TGG + chr4_1:2018427-2018446 Msa0529030:CDS 35.0%
TTTGAAGAAGATAACAAGGG+CGG + chr4_1:2018749-2018768 Msa0529030:CDS 35.0%
GGAGGAAGCAAATTCAAAAT+CGG - chr4_1:2018846-2018865 None:intergenic 35.0%
TAACAAGAAACATTCAGACG+AGG + chr4_1:2019007-2019026 Msa0529030:CDS 35.0%
ATTCATGTTCAGTTGCTTCT+GGG + chr4_1:2019033-2019052 Msa0529030:CDS 35.0%
AGAAGTTGCAGTTCTTTACA+TGG - chr4_1:2019179-2019198 None:intergenic 35.0%
! GGTTTTCTTCCCAAATTGAT+CGG + chr4_1:2019316-2019335 Msa0529030:intron 35.0%
ATCGATTAAGGAAGAGAAAG+AGG + chr4_1:2019530-2019549 Msa0529030:intron 35.0%
TTCTTCAAGTCAACTTTAGG+TGG - chr4_1:2019630-2019649 None:intergenic 35.0%
!! ACCTAAAGTTGACTTGAAGA+AGG + chr4_1:2019629-2019648 Msa0529030:CDS 35.0%
ACCTTCTTCAAGTCAACTTT+AGG - chr4_1:2019633-2019652 None:intergenic 35.0%
! GACTTGAAGAAGGTATGTAA+TGG + chr4_1:2019639-2019658 Msa0529030:intron 35.0%
TACTTAAACTTATGCCCTGT+TGG + chr4_1:2019667-2019686 Msa0529030:intron 35.0%
ACTTAAACTTATGCCCTGTT+GGG + chr4_1:2019668-2019687 Msa0529030:intron 35.0%
!! TTCAATTAATTCGGTGTGCT+CGG - chr4_1:2020235-2020254 None:intergenic 35.0%
ACAAATGGTTCTTGCATGGT+TGG + chr4_1:2017472-2017491 Msa0529030:intron 40.0%
TTAATCAATCTTTGGCCCCA+TGG + chr4_1:2017906-2017925 Msa0529030:intron 40.0%
GAATAGACTACAACACGATC+TGG - chr4_1:2018374-2018393 None:intergenic 40.0%
GATGGAATTTCGCACAATTC+AGG + chr4_1:2018395-2018414 Msa0529030:CDS 40.0%
CACAATTCAGGTCATGAAAC+CGG + chr4_1:2018407-2018426 Msa0529030:CDS 40.0%
! TAGTTCAGAAGAGAGCACAA+AGG + chr4_1:2018490-2018509 Msa0529030:CDS 40.0%
AGAAGTTTCTGTTAAGGCCT+CGG + chr4_1:2018538-2018557 Msa0529030:CDS 40.0%
!!! TTTTAGGTTAGATACGTCCG+AGG - chr4_1:2018558-2018577 None:intergenic 40.0%
! AAGTTGACGCCAGATTTTGA+GGG + chr4_1:2018590-2018609 Msa0529030:CDS 40.0%
TTGAGAACACCCTCAAAATC+TGG - chr4_1:2018602-2018621 None:intergenic 40.0%
TTCGAAACCGCACAAAACAA+GGG + chr4_1:2018631-2018650 Msa0529030:CDS 40.0%
!!! TGATTACCCCTTGTTTTGTG+CGG - chr4_1:2018641-2018660 None:intergenic 40.0%
CTTTCAGTTGCTAGGGAAAA+TGG - chr4_1:2018701-2018720 None:intergenic 40.0%
! CATTTTCCCTAGCAACTGAA+AGG + chr4_1:2018699-2018718 Msa0529030:CDS 40.0%
TAAAGGAGACTTCAACTGCA+AGG - chr4_1:2018961-2018980 None:intergenic 40.0%
! TGAAGTCTCCTTTAGTTCCA+AGG + chr4_1:2018967-2018986 Msa0529030:CDS 40.0%
AACGGTTTCCTTGGAACTAA+AGG - chr4_1:2018978-2018997 None:intergenic 40.0%
GATTCATGTTCAGTTGCTTC+TGG + chr4_1:2019032-2019051 Msa0529030:CDS 40.0%
TTTGACACCCTTCGACTATA+AGG - chr4_1:2019073-2019092 None:intergenic 40.0%
CAGTTCTTTACATGGTCAAG+GGG - chr4_1:2019171-2019190 None:intergenic 40.0%
GCAGTTCTTTACATGGTCAA+GGG - chr4_1:2019172-2019191 None:intergenic 40.0%
TGCAGTTCTTTACATGGTCA+AGG - chr4_1:2019173-2019192 None:intergenic 40.0%
AAAGAACTGCAACTTCTGTG+AGG + chr4_1:2019182-2019201 Msa0529030:intron 40.0%
! AGGAATGCACCGATCAATTT+GGG - chr4_1:2019328-2019347 None:intergenic 40.0%
! AAGGAATGCACCGATCAATT+TGG - chr4_1:2019329-2019348 None:intergenic 40.0%
AGAGGAAAAGCAACAAGCAA+TGG + chr4_1:2019379-2019398 Msa0529030:CDS 40.0%
TCAAAATGAAGCAAGGAGCA+AGG + chr4_1:2019415-2019434 Msa0529030:CDS 40.0%
TTCAAGTCAACTTTAGGTGG+AGG - chr4_1:2019627-2019646 None:intergenic 40.0%
! AACAGTCTCACAAGTGCTTT+TGG + chr4_1:2019806-2019825 Msa0529030:intron 40.0%
! TTTGGAGATTTTGCACGTGT+GGG - chr4_1:2020042-2020061 None:intergenic 40.0%
!! TTTTGGAGATTTTGCACGTG+TGG - chr4_1:2020043-2020062 None:intergenic 40.0%
ACGTGCAAAATCTCCAAAAC+TGG + chr4_1:2020044-2020063 Msa0529030:CDS 40.0%
CGTGCAAAATCTCCAAAACT+GGG + chr4_1:2020045-2020064 Msa0529030:CDS 40.0%
CAAAATCTCCAAAACTGGGT+CGG + chr4_1:2020049-2020068 Msa0529030:CDS 40.0%
GTGCAGCTAATTCATCTGAA+GGG + chr4_1:2020088-2020107 Msa0529030:CDS 40.0%
TGCAGCTAATTCATCTGAAG+GGG + chr4_1:2020089-2020108 Msa0529030:CDS 40.0%
TCTGAAGGGGTCAAAGAAAA+AGG + chr4_1:2020102-2020121 Msa0529030:CDS 40.0%
CACATCACTCAAGTTACAAC+TGG - chr4_1:2020163-2020182 None:intergenic 40.0%
AGTGATGTGACTAACGACAA+TGG + chr4_1:2020174-2020193 Msa0529030:CDS 40.0%
GATCAAAGTGAATGGACAAG+CGG + chr4_1:2020266-2020285 Msa0529030:CDS 40.0%
ATCAAAGTGAATGGACAAGC+GGG + chr4_1:2020267-2020286 Msa0529030:CDS 40.0%
ATTTATGAGTTTCCGGGGAA+TGG + chr4_1:2020343-2020362 Msa0529030:three_prime_UTR 40.0%
TGTTCCTTGCAACTTTCTGA+AGG + chr4_1:2020372-2020391 Msa0529030:three_prime_UTR 40.0%
GTTCCTTGCAACTTTCTGAA+GGG + chr4_1:2020373-2020392 Msa0529030:three_prime_UTR 40.0%
TGCATGGTTGGATCCAGTAT+AGG + chr4_1:2017484-2017503 Msa0529030:intron 45.0%
TATACACGTTTGGGCATGCT+TGG + chr4_1:2018013-2018032 Msa0529030:intron 45.0%
CGTGTTGTAGTCTATTCCGA+TGG + chr4_1:2018377-2018396 Msa0529030:CDS 45.0%
! AGAGAGCACAAAGGAATACG+AGG + chr4_1:2018499-2018518 Msa0529030:CDS 45.0%
CACAAAGGAATACGAGGTGA+AGG + chr4_1:2018505-2018524 Msa0529030:CDS 45.0%
! GAAGTTGACGCCAGATTTTG+AGG + chr4_1:2018589-2018608 Msa0529030:CDS 45.0%
GTTCGAAACCGCACAAAACA+AGG + chr4_1:2018630-2018649 Msa0529030:CDS 45.0%
TCGAAACCGCACAAAACAAG+GGG + chr4_1:2018632-2018651 Msa0529030:CDS 45.0%
GAAGATAACAAGGGCGGTAA+TGG + chr4_1:2018755-2018774 Msa0529030:CDS 45.0%
TCAGGTTTCAACGGTTTCCT+TGG - chr4_1:2018987-2019006 None:intergenic 45.0%
! TGTGAGGTCTTTCAAGTCCA+GGG + chr4_1:2019198-2019217 Msa0529030:CDS 45.0%
TTGCTTCTGCTCCAAGCTTT+CGG + chr4_1:2019227-2019246 Msa0529030:CDS 45.0%
TGAACGCGCACAAAGAAGAA+AGG + chr4_1:2019255-2019274 Msa0529030:CDS 45.0%
AGGAAGCCATCAAACAGTTG+AGG + chr4_1:2019550-2019569 Msa0529030:CDS 45.0%
AAGCCATCAAACAGTTGAGG+AGG + chr4_1:2019553-2019572 Msa0529030:CDS 45.0%
ACTCCTCCTCAACTGTTTGA+TGG - chr4_1:2019559-2019578 None:intergenic 45.0%
CGTGGTAAAAGCTTGGCATA+GGG - chr4_1:2019599-2019618 None:intergenic 45.0%
TCGTGGTAAAAGCTTGGCAT+AGG - chr4_1:2019600-2019619 None:intergenic 45.0%
! TATGCCAAGCTTTTACCACG+AGG + chr4_1:2019599-2019618 Msa0529030:CDS 45.0%
! ATGCCAAGCTTTTACCACGA+GGG + chr4_1:2019600-2019619 Msa0529030:CDS 45.0%
GGTGCAGCTAATTCATCTGA+AGG + chr4_1:2020087-2020106 Msa0529030:CDS 45.0%
AGGGGTCAAAGAAAAAGGAG+CGG + chr4_1:2020107-2020126 Msa0529030:CDS 45.0%
TGTGACTAACGACAATGGCT+TGG + chr4_1:2020179-2020198 Msa0529030:CDS 45.0%
! ACTAACGACAATGGCTTGGA+TGG + chr4_1:2020183-2020202 Msa0529030:CDS 45.0%
GGAACAATACTTCCATTCCC+CGG - chr4_1:2020358-2020377 None:intergenic 45.0%
ACACCCTTCAGAAAGTTGCA+AGG - chr4_1:2020379-2020398 None:intergenic 45.0%
TTTCTGTCTGCCTCAACTTC+AGG + chr4_1:2020538-2020557 Msa0529030:three_prime_UTR 45.0%
TTCTGTCTGCCTCAACTTCA+GGG + chr4_1:2020539-2020558 Msa0529030:three_prime_UTR 45.0%
ACAATGTGACCCTGAAGTTG+AGG - chr4_1:2020551-2020570 None:intergenic 45.0%
GTAGGCTTGACAGTATCTCG+TGG - chr4_1:2018668-2018687 None:intergenic 50.0%
GAAAATGGTCGCGGAACTGT+AGG - chr4_1:2018686-2018705 None:intergenic 50.0%
GTTGCTAGGGAAAATGGTCG+CGG - chr4_1:2018695-2018714 None:intergenic 50.0%
AGCACGCCTTTCAGTTGCTA+GGG - chr4_1:2018708-2018727 None:intergenic 50.0%
TAGCACGCCTTTCAGTTGCT+AGG - chr4_1:2018709-2018728 None:intergenic 50.0%
! CTGTGAGGTCTTTCAAGTCC+AGG + chr4_1:2019197-2019216 Msa0529030:CDS 50.0%
ACGCGCACAAAGAAGAAAGG+AGG + chr4_1:2019258-2019277 Msa0529030:CDS 50.0%
! TGCCAAGCTTTTACCACGAG+GGG + chr4_1:2019601-2019620 Msa0529030:CDS 50.0%
AGCAGAAGCAACAGTTGCCC+TGG - chr4_1:2019218-2019237 None:intergenic 55.0%
CGTTCAGTCGACCGAAAGCT+TGG - chr4_1:2019241-2019260 None:intergenic 55.0%
! GGAGATTTTGCACGTGTGGG+TGG - chr4_1:2020039-2020058 None:intergenic 55.0%
! CTCTTTCGCCGACCCAGTTT+TGG - chr4_1:2020060-2020079 None:intergenic 55.0%
GGCCCCTCGTGGTAAAAGCT+TGG - chr4_1:2019606-2019625 None:intergenic 60.0%
TTGCACGTGTGGGTGGTAGC+TGG - chr4_1:2020032-2020051 None:intergenic 60.0%
GGTCGGCGAAAGAGCAACAG+CGG + chr4_1:2020066-2020085 Msa0529030:CDS 60.0%
CTTTAGGTGGAGGCCCCTCG+TGG - chr4_1:2019617-2019636 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 2017191 2020690 2017191 ID=Msa0529030;Name=Msa0529030
chr4_1 mRNA 2017191 2020690 2017191 ID=Msa0529030-mRNA-1;Parent=Msa0529030;Name=Msa0529030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=142|1|1|1|0.83|0.71|7|379|382
chr4_1 exon 2017191 2017328 2017191 ID=Msa0529030-mRNA-1:exon:608;Parent=Msa0529030-mRNA-1
chr4_1 exon 2018328 2018835 2018328 ID=Msa0529030-mRNA-1:exon:609;Parent=Msa0529030-mRNA-1
chr4_1 exon 2018966 2019054 2018966 ID=Msa0529030-mRNA-1:exon:610;Parent=Msa0529030-mRNA-1
chr4_1 exon 2019186 2019279 2019186 ID=Msa0529030-mRNA-1:exon:611;Parent=Msa0529030-mRNA-1
chr4_1 exon 2019365 2019436 2019365 ID=Msa0529030-mRNA-1:exon:612;Parent=Msa0529030-mRNA-1
chr4_1 exon 2019540 2019650 2019540 ID=Msa0529030-mRNA-1:exon:613;Parent=Msa0529030-mRNA-1
chr4_1 exon 2020033 2020690 2020033 ID=Msa0529030-mRNA-1:exon:614;Parent=Msa0529030-mRNA-1
chr4_1 five_prime_UTR 2017191 2017328 2017191 ID=Msa0529030-mRNA-1:five_prime_utr;Parent=Msa0529030-mRNA-1
chr4_1 five_prime_UTR 2018328 2018331 2018328 ID=Msa0529030-mRNA-1:five_prime_utr;Parent=Msa0529030-mRNA-1
chr4_1 CDS 2018332 2018835 2018332 ID=Msa0529030-mRNA-1:cds;Parent=Msa0529030-mRNA-1
chr4_1 CDS 2018966 2019054 2018966 ID=Msa0529030-mRNA-1:cds;Parent=Msa0529030-mRNA-1
chr4_1 CDS 2019186 2019279 2019186 ID=Msa0529030-mRNA-1:cds;Parent=Msa0529030-mRNA-1
chr4_1 CDS 2019365 2019436 2019365 ID=Msa0529030-mRNA-1:cds;Parent=Msa0529030-mRNA-1
chr4_1 CDS 2019540 2019650 2019540 ID=Msa0529030-mRNA-1:cds;Parent=Msa0529030-mRNA-1
chr4_1 CDS 2020033 2020311 2020033 ID=Msa0529030-mRNA-1:cds;Parent=Msa0529030-mRNA-1
chr4_1 three_prime_UTR 2020312 2020690 2020312 ID=Msa0529030-mRNA-1:three_prime_utr;Parent=Msa0529030-mRNA-1
Gene Sequence

>Msa0529030

ATGGGAATAGAAGATTCAGATATTTGTATCATCAAGGAGCCAGATCGTGTTGTAGTCTATTCCGATGGAATTTCGCACAATTCAGGTCATGAAACCGGAACTGATAATCACAATATGGCAGAGTCTTATGAGCATATCAACGAGACTACTGAACATCATAGTTCAGAAGAGAGCACAAAGGAATACGAGGTGAAGGAATGTACAACAGAAGTTTCTGTTAAGGCCTCGGACGTATCTAACCTAAAAAAAAGTGAGGAGAAGTTGACGCCAGATTTTGAGGGTGTTCTCAATGTGAAAAGTTCGAAACCGCACAAAACAAGGGGTAATCAAAAGCCACGAGATACTGTCAAGCCTACAGTTCCGCGACCATTTTCCCTAGCAACTGAAAGGCGTGCTACAATTGTAACTCGTCCTACTTTTGAAGAAGATAACAAGGGCGGTAATGGAAGAAAATCTGTAAATAAAAAGAATGTGCTGTCTTCTAATACGCTTAAACAGAATCAGTTGAAGTCTCCTTTAGTTCCAAGGAAACCGTTGAAACCTGATAACAAGAAACATTCAGACGAGGACGATTCATGTTCAGTTGCTTCTGGAACTGCAACTTCTGTGAGGTCTTTCAAGTCCAGGGCAACTGTTGCTTCTGCTCCAAGCTTTCGGTCGACTGAACGCGCACAAAGAAGAAAGGAGTTTTATTCAAAATTAGAGGAAAAGCAACAAGCAATGGAAGCTGAGAAGAATCAAAATGAAGCAAGGAGCAAGGAAGAGAAAGAGGAAGCCATCAAACAGTTGAGGAGGAGTTTAAAGTTTAAAGCAAGCCCTATGCCAAGCTTTTACCACGAGGGGCCTCCACCTAAAGTTGACTTGAAGAAGCTACCACCCACACGTGCAAAATCTCCAAAACTGGGTCGGCGAAAGAGCAACAGCGGTGCAGCTAATTCATCTGAAGGGGTCAAAGAAAAAGGAGCGGCTGCTCAGAGAAAGCATCGCACATCGAACACCAGTTGTAACTTGAGTGATGTGACTAACGACAATGGCTTGGATGGTCTCAAAAATAAGACTGAAAACAAGACCGAGCACACCGAATTAATTGAAGAAATTAATATGATCAAAGTGAATGGACAAGCGGGCATAGAGATCAGCAGCCAGTAA

Protein sequence

>Msa0529030

MGIEDSDICIIKEPDRVVVYSDGISHNSGHETGTDNHNMAESYEHINETTEHHSSEESTKEYEVKECTTEVSVKASDVSNLKKSEEKLTPDFEGVLNVKSSKPHKTRGNQKPRDTVKPTVPRPFSLATERRATIVTRPTFEEDNKGGNGRKSVNKKNVLSSNTLKQNQLKSPLVPRKPLKPDNKKHSDEDDSCSVASGTATSVRSFKSRATVASAPSFRSTERAQRRKEFYSKLEEKQQAMEAEKNQNEARSKEEKEEAIKQLRRSLKFKASPMPSFYHEGPPPKVDLKKLPPTRAKSPKLGRRKSNSGAANSSEGVKEKGAAAQRKHRTSNTSCNLSDVTNDNGLDGLKNKTENKTEHTELIEEINMIKVNGQAGIEISSQ*