Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0776890 | sp|O22922|RU2B1_ARATH | 69.492 | 236 | 66 | 3 | 1 | 234 | 1 | 232 | 1.61e-122 | 350 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0776890 | I3SFF7 | 98.291 | 234 | 4 | 0 | 1 | 234 | 1 | 234 | 1.23e-170 | 478 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0776890 | Msa0822580 | 0.846718 | 1.821625e-59 | -8.615850e-47 |
Msa0776890 | Msa1037290 | 0.815258 | 1.013798e-51 | -8.615850e-47 |
Msa0776890 | Msa1164150 | 0.829871 | 4.038183e-55 | -8.615850e-47 |
Msa0776890 | Msa1186030 | 0.808787 | 2.608973e-50 | -8.615850e-47 |
Msa0776890 | Msa1240270 | 0.823156 | 1.612051e-53 | -8.615850e-47 |
Msa0776890 | Msa1301640 | 0.804010 | 2.652267e-49 | -8.615850e-47 |
Msa0776890 | Msa1368920 | 0.815559 | 8.689479e-52 | -8.615850e-47 |
Msa0191450 | Msa0776890 | 0.815799 | 7.680607e-52 | -8.615850e-47 |
Msa0191550 | Msa0776890 | 0.802958 | 4.381985e-49 | -8.615850e-47 |
Msa0582070 | Msa0776890 | 0.803467 | 3.438427e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0776890 | MtrunA17_Chr5g0432171 | 98.291 | 234 | 4 | 0 | 1 | 234 | 1 | 234 | 2.37e-174 | 478 |
Msa0776890 | MtrunA17_Chr1g0176901 | 94.944 | 178 | 8 | 1 | 57 | 234 | 2 | 178 | 2.38e-111 | 317 |
Msa0776890 | MtrunA17_Chr4g0044291 | 59.829 | 234 | 88 | 1 | 7 | 234 | 11 | 244 | 6.83e-100 | 290 |
Msa0776890 | MtrunA17_Chr7g0269401 | 57.764 | 161 | 57 | 4 | 83 | 234 | 3 | 161 | 2.59e-55 | 174 |
Msa0776890 | MtrunA17_Chr7g0269411 | 65.432 | 81 | 28 | 0 | 7 | 87 | 11 | 91 | 8.86e-35 | 120 |
Msa0776890 | MtrunA17_Chr4g0044321 | 62.195 | 82 | 31 | 0 | 9 | 90 | 13 | 94 | 3.82e-28 | 110 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0776890 | AT2G30260.1 | 69.492 | 236 | 66 | 3 | 1 | 234 | 1 | 232 | 1.64e-123 | 350 |
Msa0776890 | AT1G06960.1 | 72.222 | 234 | 60 | 2 | 1 | 234 | 1 | 229 | 1.08e-120 | 343 |
Msa0776890 | AT1G06960.3 | 69.849 | 199 | 55 | 2 | 36 | 234 | 7 | 200 | 2.58e-95 | 277 |
Msa0776890 | AT2G47580.1 | 56.485 | 239 | 94 | 3 | 5 | 234 | 13 | 250 | 1.81e-87 | 259 |
Msa0776890 | AT2G30260.2 | 71.631 | 141 | 35 | 1 | 1 | 141 | 1 | 136 | 7.04e-72 | 216 |
Msa0776890 | AT1G06960.2 | 78.195 | 133 | 29 | 0 | 1 | 133 | 1 | 133 | 2.42e-70 | 213 |
Msa0776890 | AT1G06960.5 | 82.524 | 103 | 18 | 0 | 1 | 103 | 1 | 103 | 9.05e-63 | 192 |
Msa0776890 | AT1G06960.4 | 65.789 | 152 | 47 | 2 | 83 | 234 | 4 | 150 | 7.24e-61 | 188 |
Msa0776890 | AT1G06960.6 | 75.510 | 98 | 24 | 0 | 36 | 133 | 7 | 104 | 5.08e-45 | 147 |
Find 67 sgRNAs with CRISPR-Local
Find 405 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTCAATATGGAAGGATTT+TGG | 0.143011 | 5_2:-55594919 | Msa0776890:CDS |
GCAAAATTTGCTTTGAATAT+TGG | 0.195857 | 5_2:+55591381 | None:intergenic |
ATTGAGATTCTTAATGTAAA+TGG | 0.200962 | 5_2:+55597068 | None:intergenic |
CATCTGTCGCACTGCATTAC+TGG | 0.268948 | 5_2:+55594827 | None:intergenic |
TGCAGAAGTTGTAAGTTTAC+AGG | 0.291868 | 5_2:-55591324 | Msa0776890:three_prime_UTR |
TATTGCTTATTCTCTCAATA+TGG | 0.294966 | 5_2:-55594930 | Msa0776890:CDS |
AAACCAGAGAGGATGCTTTC+AGG | 0.319590 | 5_2:-55597111 | Msa0776890:exon |
TTAATGTAAATGGTTTGATT+TGG | 0.322185 | 5_2:+55597078 | None:intergenic |
CTTAGCAAAGTTTATAATCA+TGG | 0.324640 | 5_2:+55591428 | None:intergenic |
TGAAAGCATCCTCTCTGGTT+TGG | 0.356331 | 5_2:+55597113 | None:intergenic |
GCCTCTTGGGCACCGGACCC+TGG | 0.364979 | 5_2:+55591663 | None:intergenic |
CTCTATGAACAAAATATTGT+TGG | 0.365120 | 5_2:+55591632 | None:intergenic |
TGTTGGGAGCAGCTGCCTCT+TGG | 0.368601 | 5_2:+55591649 | None:intergenic |
GTTGGGAGCAGCTGCCTCTT+GGG | 0.371933 | 5_2:+55591650 | None:intergenic |
GCACCATGTGTTCCACCATT+AGG | 0.384777 | 5_2:+55592198 | None:intergenic |
CCTCTCTGGTTTGGTTCTGA+TGG | 0.397079 | 5_2:+55597122 | None:intergenic |
GCCTCATTCCGTCCAGGGTC+CGG | 0.398715 | 5_2:-55591675 | Msa0776890:CDS |
ATGTAAATGGTTTGATTTGG+AGG | 0.406769 | 5_2:+55597081 | None:intergenic |
AAACAATCTTCTGTGCCTAA+TGG | 0.424244 | 5_2:-55592213 | Msa0776890:CDS |
TCTCAGTTACTTTGTAAACT+AGG | 0.426990 | 5_2:-55591174 | Msa0776890:three_prime_UTR |
TGAGAAATCTATCACATTTG+TGG | 0.431750 | 5_2:-55591276 | Msa0776890:three_prime_UTR |
AACCAGAGAGGATGCTTTCA+GGG | 0.433914 | 5_2:-55597110 | Msa0776890:exon |
AGCAGCTGCCTCTTGGGCAC+CGG | 0.444275 | 5_2:+55591656 | None:intergenic |
ACAATCATCCATGGCAATGC+AGG | 0.453318 | 5_2:-55591484 | Msa0776890:CDS |
TCTATGAACAAAATATTGTT+GGG | 0.458630 | 5_2:+55591633 | None:intergenic |
GACGCCTAAGCTTCGAGGAC+AGG | 0.460104 | 5_2:-55594880 | Msa0776890:CDS |
AGAGGGAAGCTTTGTTCCAA+GGG | 0.460175 | 5_2:-55594228 | Msa0776890:CDS |
CGCTTGATCGAAGCAAAGCC+AGG | 0.463784 | 5_2:-55591537 | Msa0776890:CDS |
GAGAAATCTATCACATTTGT+GGG | 0.464095 | 5_2:-55591275 | Msa0776890:three_prime_UTR |
TTAGCAAAGTTTATAATCAT+GGG | 0.465775 | 5_2:+55591429 | None:intergenic |
CATGCCTGTCCTCGAAGCTT+AGG | 0.475388 | 5_2:+55594876 | None:intergenic |
TCCCCTGAAAGCATCCTCTC+TGG | 0.487029 | 5_2:+55597108 | None:intergenic |
ACCGGACCCTGGACGGAATG+AGG | 0.501996 | 5_2:+55591674 | None:intergenic |
AAGCGCACTTCCTTAAAACC+TGG | 0.502688 | 5_2:+55591555 | None:intergenic |
CAGCAGGCCTCATTCCGTCC+AGG | 0.503368 | 5_2:-55591681 | Msa0776890:CDS |
CTAAAGACGCCTAAGCTTCG+AGG | 0.510089 | 5_2:-55594885 | Msa0776890:CDS |
AAGAGGGAAGCTTTGTTCCA+AGG | 0.510421 | 5_2:-55594229 | Msa0776890:CDS |
ATCCTGCCGGTAGTTTCATA+AGG | 0.510992 | 5_2:+55591603 | None:intergenic |
CTTGGGCACCGGACCCTGGA+CGG | 0.524347 | 5_2:+55591667 | None:intergenic |
GCTTATTCTCTCAATATGGA+AGG | 0.527328 | 5_2:-55594926 | Msa0776890:CDS |
AAATCTACAAATGCGATACC+TGG | 0.531054 | 5_2:+55591519 | None:intergenic |
TGATGTCTATTGATTGTATG+TGG | 0.531571 | 5_2:-55591227 | Msa0776890:three_prime_UTR |
TCCAGGGTCCGGTGCCCAAG+AGG | 0.546064 | 5_2:-55591664 | Msa0776890:CDS |
CATTGACCTAGACAATGCTA+TGG | 0.547222 | 5_2:-55591125 | Msa0776890:three_prime_UTR |
CTCGACTCGACTATCGAGCT+AGG | 0.555370 | 5_2:-55597167 | Msa0776890:five_prime_UTR |
AGCAGGCCTCATTCCGTCCA+GGG | 0.559600 | 5_2:-55591680 | Msa0776890:CDS |
CAATCTTCTGTGCCTAATGG+TGG | 0.560473 | 5_2:-55592210 | Msa0776890:CDS |
TGCCTTATGAAACTACCGGC+AGG | 0.562261 | 5_2:-55591605 | Msa0776890:CDS |
ATGGCAATGCAGGCTCTACA+AGG | 0.563519 | 5_2:-55591474 | Msa0776890:CDS |
TAAGCTTCGAGGACAGGCAT+GGG | 0.574433 | 5_2:-55594874 | Msa0776890:CDS |
CTAAGCTTCGAGGACAGGCA+TGG | 0.581122 | 5_2:-55594875 | Msa0776890:CDS |
GATTGTATTGCTAAAGAAGA+GGG | 0.592319 | 5_2:-55594245 | Msa0776890:CDS |
GAGCATTTCGAGCATCCTGC+CGG | 0.593424 | 5_2:+55591590 | None:intergenic |
TTGTAGAGCCTGCATTGCCA+TGG | 0.596181 | 5_2:+55591476 | None:intergenic |
GGAAGTTAGATTAAAGTAGA+CGG | 0.596942 | 5_2:-55591303 | Msa0776890:three_prime_UTR |
AGCGCACTTCCTTAAAACCT+GGG | 0.597463 | 5_2:+55591556 | None:intergenic |
GTGCCTAATGGTGGAACACA+TGG | 0.600600 | 5_2:-55592201 | Msa0776890:CDS |
ATGCTCTTCGAACAATACCC+AGG | 0.603681 | 5_2:-55591573 | Msa0776890:CDS |
GGGAAGATTGAGATAGTGCT+TGG | 0.619587 | 5_2:-55591255 | Msa0776890:three_prime_UTR |
AGATGAGGCACAATCATCCA+TGG | 0.621792 | 5_2:-55591493 | Msa0776890:CDS |
AATTTGCCTTATGAAACTAC+CGG | 0.623907 | 5_2:-55591609 | Msa0776890:CDS |
AATGAAAAGATCAAGAAAGA+CGG | 0.624809 | 5_2:-55597048 | Msa0776890:intron |
GGAACACATGGTGCAAGTAA+TGG | 0.626001 | 5_2:-55592189 | Msa0776890:CDS |
AGATTGTATTGCTAAAGAAG+AGG | 0.631624 | 5_2:-55594246 | Msa0776890:CDS |
ACCAGAGAGGATGCTTTCAG+GGG | 0.636302 | 5_2:-55597109 | Msa0776890:exon |
CCATCAGAACCAAACCAGAG+AGG | 0.711349 | 5_2:-55597122 | Msa0776890:five_prime_UTR |
ACACATGGTGCAAGTAATGG+TGG | 0.721642 | 5_2:-55592186 | Msa0776890:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAGTAAATATTTATACATA+TGG | + | chr5_2:55592442-55592461 | None:intergenic | 10.0% |
!!! | TGTATATACTTTATATTTTA+AGG | - | chr5_2:55595515-55595534 | Msa0776890:intron | 10.0% |
!! | TAGAAAAGTAAGAAAAAAAT+GGG | + | chr5_2:55591275-55591294 | None:intergenic | 15.0% |
!!! | TGTTTTTTGTTGAATTATTA+GGG | - | chr5_2:55591415-55591434 | Msa0776890:exon | 15.0% |
!!! | AAAATTTAGTTTAATTGAAC+TGG | - | chr5_2:55591516-55591535 | Msa0776890:CDS | 15.0% |
!!! | AAATTTAGTTTAATTGAACT+GGG | - | chr5_2:55591517-55591536 | Msa0776890:CDS | 15.0% |
!! | TAAAAAGTTAATGAAAATTG+TGG | - | chr5_2:55592039-55592058 | Msa0776890:intron | 15.0% |
!! | ATATAACAGATCATATATAT+AGG | - | chr5_2:55592252-55592271 | Msa0776890:intron | 15.0% |
!! | TATAACAGATCATATATATA+GGG | - | chr5_2:55592253-55592272 | Msa0776890:intron | 15.0% |
!! | ATGATATATCAAATAATTCT+TGG | + | chr5_2:55592467-55592486 | None:intergenic | 15.0% |
!! | AAATAATAATTCAAAAAGTG+AGG | + | chr5_2:55594139-55594158 | None:intergenic | 15.0% |
!!! | TCACTTTTTGAATTATTATT+TGG | - | chr5_2:55594138-55594157 | Msa0776890:intron | 15.0% |
!!! | CACTTTTTGAATTATTATTT+GGG | - | chr5_2:55594139-55594158 | Msa0776890:intron | 15.0% |
!!! | CTAATATTTTCTATCATTTT+TGG | + | chr5_2:55594288-55594307 | None:intergenic | 15.0% |
!! | CAAAAATGATAGAAAATATT+AGG | - | chr5_2:55594286-55594305 | Msa0776890:intron | 15.0% |
!! | AAATTAATGTTTAGTACAAA+AGG | + | chr5_2:55594760-55594779 | None:intergenic | 15.0% |
!! | TAATAATCAACATAGATTAA+AGG | + | chr5_2:55596125-55596144 | None:intergenic | 15.0% |
!! | TATTAAACGTTGTTAAATAA+CGG | - | chr5_2:55596201-55596220 | Msa0776890:intron | 15.0% |
!! | TTAATGTAAATGGTTTGATT+TGG | + | chr5_2:55591196-55591215 | None:intergenic | 20.0% |
!! | ATTGAGATTCTTAATGTAAA+TGG | + | chr5_2:55591206-55591225 | None:intergenic | 20.0% |
!! | GTAGAAAAGTAAGAAAAAAA+TGG | + | chr5_2:55591276-55591295 | None:intergenic | 20.0% |
!!! | TTGCTTTTTACTACTTTTTT+AGG | - | chr5_2:55591303-55591322 | Msa0776890:three_prime_UTR | 20.0% |
!!! | TTATGGTTAGAAATTTTAAC+TGG | - | chr5_2:55591387-55591406 | Msa0776890:three_prime_UTR | 20.0% |
!!! | TATGGTTAGAAATTTTAACT+GGG | - | chr5_2:55591388-55591407 | Msa0776890:three_prime_UTR | 20.0% |
!!! | GTGTTTTTTGTTGAATTATT+AGG | - | chr5_2:55591414-55591433 | Msa0776890:exon | 20.0% |
!!! | GCTTTTATGTATTATTCATA+AGG | - | chr5_2:55591605-55591624 | Msa0776890:CDS | 20.0% |
!! | TAATATAACCAACAATAGAT+TGG | + | chr5_2:55591865-55591884 | None:intergenic | 20.0% |
!!! | AATAAGAACCTTTAATTTGA+TGG | - | chr5_2:55592075-55592094 | Msa0776890:intron | 20.0% |
!!! | ATCATTGTATAACTTTTTAC+CGG | + | chr5_2:55592290-55592309 | None:intergenic | 20.0% |
!! | TGTATTACAAAATTCAATGT+TGG | - | chr5_2:55592393-55592412 | Msa0776890:intron | 20.0% |
!! | ATATATCATTGTCATATGTA+CGG | - | chr5_2:55592478-55592497 | Msa0776890:intron | 20.0% |
!! | TACAAGTCCAATATATATAT+GGG | + | chr5_2:55593143-55593162 | None:intergenic | 20.0% |
!! | ATACAAGTCCAATATATATA+TGG | + | chr5_2:55593144-55593163 | None:intergenic | 20.0% |
!! | ATATATATATTGGACTTGTA+TGG | - | chr5_2:55593143-55593162 | Msa0776890:intron | 20.0% |
!!! | ATATTATGTTTAGCTTTCTT+TGG | - | chr5_2:55593788-55593807 | Msa0776890:intron | 20.0% |
!! | ATTTAACAAAATTAGAGAAG+AGG | + | chr5_2:55594945-55594964 | None:intergenic | 20.0% |
!!! | TTCTCTAATTTTGTTAAATG+TGG | - | chr5_2:55594946-55594965 | Msa0776890:CDS | 20.0% |
!!! | AAATTCATTATTTTGCAATG+TGG | - | chr5_2:55595301-55595320 | Msa0776890:intron | 20.0% |
!! | ATAAATCATGTACACAAAAT+AGG | + | chr5_2:55595416-55595435 | None:intergenic | 20.0% |
!! | CATATTATAACAACATAGAT+TGG | - | chr5_2:55595688-55595707 | Msa0776890:intron | 20.0% |
!! | TCTATGAACAAAATATTGTT+GGG | + | chr5_2:55596641-55596660 | None:intergenic | 20.0% |
!! | TTAGCAAAGTTTATAATCAT+GGG | + | chr5_2:55596845-55596864 | None:intergenic | 20.0% |
! | AATGAAAAGATCAAGAAAGA+CGG | - | chr5_2:55591223-55591242 | Msa0776890:three_prime_UTR | 25.0% |
! | GAAAAAAATGGGAATGTAAA+CGG | + | chr5_2:55591264-55591283 | None:intergenic | 25.0% |
!!! | ACTACTTTTTTAGGTTTCAA+CGG | - | chr5_2:55591312-55591331 | Msa0776890:three_prime_UTR | 25.0% |
!! | TTGAATTATTAGGGTAGTTT+TGG | - | chr5_2:55591424-55591443 | Msa0776890:CDS | 25.0% |
! | CAAAAATAAGTCAATCCAAA+CGG | + | chr5_2:55591566-55591585 | None:intergenic | 25.0% |
! | TATTATTCATAAGGTTGTCA+AGG | - | chr5_2:55591614-55591633 | Msa0776890:CDS | 25.0% |
! | TAAAAATAAGCCAATCCAAA+TGG | - | chr5_2:55591744-55591763 | Msa0776890:intron | 25.0% |
! | AAAAATAAGCCAATCCAAAT+GGG | - | chr5_2:55591745-55591764 | Msa0776890:intron | 25.0% |
! | GCTTATTATGTATGAGAAAA+GGG | - | chr5_2:55591767-55591786 | Msa0776890:intron | 25.0% |
! | CAATTCAACCATCAAATTAA+AGG | + | chr5_2:55592086-55592105 | None:intergenic | 25.0% |
! | TGGTTGAATTGATGAAATTA+AGG | - | chr5_2:55592095-55592114 | Msa0776890:intron | 25.0% |
! | GGTTGAATTGATGAAATTAA+GGG | - | chr5_2:55592096-55592115 | Msa0776890:intron | 25.0% |
!! | ATCATTGCATAACTTTTTAC+CGG | + | chr5_2:55592234-55592253 | None:intergenic | 25.0% |
! | ATATAACAGATCCTATATGT+AGG | - | chr5_2:55592308-55592327 | Msa0776890:intron | 25.0% |
! | TATAACAGATCCTATATGTA+GGG | - | chr5_2:55592309-55592328 | Msa0776890:intron | 25.0% |
! | AGTATATCAGTGTAATACAT+GGG | - | chr5_2:55592332-55592351 | Msa0776890:intron | 25.0% |
!!! | TCGTTGAATAACTTTTTTAC+TGG | - | chr5_2:55592365-55592384 | Msa0776890:intron | 25.0% |
! | TTACAAAATTCAATGTTGGA+TGG | - | chr5_2:55592397-55592416 | Msa0776890:intron | 25.0% |
! | TACAAAATTCAATGTTGGAT+GGG | - | chr5_2:55592398-55592417 | Msa0776890:intron | 25.0% |
! | TATATCATTGTCATATGTAC+GGG | - | chr5_2:55592479-55592498 | Msa0776890:intron | 25.0% |
!! | TTTCTACCATCTTTTCTAAT+AGG | + | chr5_2:55592649-55592668 | None:intergenic | 25.0% |
!! | GTTTCTCTAATAGTTTTTGT+AGG | + | chr5_2:55592772-55592791 | None:intergenic | 25.0% |
! | TATTAGAGAAACTATCAAGA+AGG | - | chr5_2:55592780-55592799 | Msa0776890:intron | 25.0% |
! | TATTAGAGAAACTATCAAGA+AGG | - | chr5_2:55592780-55592799 | Msa0776890:intron | 25.0% |
! | ACAAGTCCAATATATATATG+GGG | + | chr5_2:55593142-55593161 | None:intergenic | 25.0% |
!! | TTGCTCTTGATTTTTCATTT+CGG | - | chr5_2:55593169-55593188 | Msa0776890:intron | 25.0% |
! | TATTGCTTATTCTCTCAATA+TGG | - | chr5_2:55593341-55593360 | Msa0776890:intron | 25.0% |
!! | CCATAGGTTTTTCATAAAAT+GGG | + | chr5_2:55593478-55593497 | None:intergenic | 25.0% |
!! | ACCATAGGTTTTTCATAAAA+TGG | + | chr5_2:55593479-55593498 | None:intergenic | 25.0% |
! | CAGTATAACTTTAATACCAT+AGG | + | chr5_2:55593494-55593513 | None:intergenic | 25.0% |
! | GTACACAAATTAACAGATAT+AGG | + | chr5_2:55593517-55593536 | None:intergenic | 25.0% |
! | TAATTTCTCTTAATGTCCAT+TGG | - | chr5_2:55593619-55593638 | Msa0776890:intron | 25.0% |
! | GAATTCTTGGTTAAACATTA+TGG | - | chr5_2:55593688-55593707 | Msa0776890:intron | 25.0% |
! | TTCAAAGGGATAAATGATAA+TGG | + | chr5_2:55594184-55594203 | None:intergenic | 25.0% |
! | TTCTAATGAATGACTAGTAT+TGG | + | chr5_2:55594265-55594284 | None:intergenic | 25.0% |
! | ATTGAGAGTAATATAAGAAG+AGG | - | chr5_2:55594463-55594482 | Msa0776890:intron | 25.0% |
! | TTGAGAGTAATATAAGAAGA+GGG | - | chr5_2:55594464-55594483 | Msa0776890:intron | 25.0% |
! | NNNNNNNNGTCAACATGTCA+TGG | - | chr5_2:55595268-55595287 | Msa0776890:intron | 25.0% |
! | ATAATCCCTAATTTGAATGA+GGG | + | chr5_2:55595813-55595832 | None:intergenic | 25.0% |
!! | CGTTAGTTTCTTTATTGAAT+TGG | - | chr5_2:55595959-55595978 | Msa0776890:intron | 25.0% |
! | TACGTAATATTGTGAAATAG+CGG | - | chr5_2:55596298-55596317 | Msa0776890:intron | 25.0% |
! | CAATTCACAACACTAAAATT+GGG | - | chr5_2:55596386-55596405 | Msa0776890:intron | 25.0% |
! | ATATGTTTCAATTTAACTCG+TGG | - | chr5_2:55596484-55596503 | Msa0776890:intron | 25.0% |
! | CTCTATGAACAAAATATTGT+TGG | + | chr5_2:55596642-55596661 | None:intergenic | 25.0% |
!!! | ATTTGTAGATTTTGAAGATG+AGG | - | chr5_2:55596763-55596782 | Msa0776890:intron | 25.0% |
!! | TTATAATCATGGGATTTTGA+GGG | + | chr5_2:55596835-55596854 | None:intergenic | 25.0% |
!! | TTTATAATCATGGGATTTTG+AGG | + | chr5_2:55596836-55596855 | None:intergenic | 25.0% |
! | CTTAGCAAAGTTTATAATCA+TGG | + | chr5_2:55596846-55596865 | None:intergenic | 25.0% |
!! | GCAAAATTTGCTTTGAATAT+TGG | + | chr5_2:55596893-55596912 | None:intergenic | 25.0% |
!! | ATGTAAATGGTTTGATTTGG+AGG | + | chr5_2:55591193-55591212 | None:intergenic | 30.0% |
TCATACATAATAAGCCCATT+TGG | + | chr5_2:55591762-55591781 | None:intergenic | 30.0% | |
GGCTTATTATGTATGAGAAA+AGG | - | chr5_2:55591766-55591785 | Msa0776890:intron | 30.0% | |
TTGAATTGCCAATCTATTGT+TGG | - | chr5_2:55591854-55591873 | Msa0776890:intron | 30.0% | |
!! | TTATTTTATGAAGTCTCGCA+TGG | - | chr5_2:55592013-55592032 | Msa0776890:intron | 30.0% |
!! | ATATAGGGAGTATCTATATC+CGG | - | chr5_2:55592268-55592287 | Msa0776890:intron | 30.0% |
GAGTATATCAGTGTAATACA+TGG | - | chr5_2:55592331-55592350 | Msa0776890:intron | 30.0% | |
GAAATGACAACATTAGAGAA+AGG | - | chr5_2:55592613-55592632 | Msa0776890:intron | 30.0% | |
TTAATCTTGACGTATGATAG+AGG | - | chr5_2:55593109-55593128 | Msa0776890:intron | 30.0% | |
! | TGCTCTTGATTTTTCATTTC+GGG | - | chr5_2:55593170-55593189 | Msa0776890:intron | 30.0% |
!!! | GTAATTGGATTTTGTTTTGC+TGG | - | chr5_2:55593201-55593220 | Msa0776890:intron | 30.0% |
! | CCCATTTTATGAAAAACCTA+TGG | - | chr5_2:55593475-55593494 | Msa0776890:intron | 30.0% |
AAAACGTGATAAAACACAAC+AGG | + | chr5_2:55593552-55593571 | None:intergenic | 30.0% | |
TAACCAAGAATTCTTACAAG+CGG | + | chr5_2:55593681-55593700 | None:intergenic | 30.0% | |
!! | TTTGAAATCTTTTGTCCTGT+TGG | - | chr5_2:55593811-55593830 | Msa0776890:intron | 30.0% |
AAGAATGAGAATGAAAGATG+TGG | - | chr5_2:55593850-55593869 | Msa0776890:intron | 30.0% | |
!! | CTTGTTTTCGTATGAAGTTA+CGG | - | chr5_2:55593904-55593923 | Msa0776890:intron | 30.0% |
! | TTGTTTTCGTATGAAGTTAC+GGG | - | chr5_2:55593905-55593924 | Msa0776890:intron | 30.0% |
! | TTTCAGAAGCATATCATTGA+TGG | + | chr5_2:55593953-55593972 | None:intergenic | 30.0% |
AGATTGTATTGCTAAAGAAG+AGG | - | chr5_2:55594025-55594044 | Msa0776890:intron | 30.0% | |
GATTGTATTGCTAAAGAAGA+GGG | - | chr5_2:55594026-55594045 | Msa0776890:intron | 30.0% | |
AAAAAGAAACAAGAGGAGAA+AGG | - | chr5_2:55594071-55594090 | Msa0776890:intron | 30.0% | |
TCAAAAAGTGAGGATGATTA+TGG | + | chr5_2:55594129-55594148 | None:intergenic | 30.0% | |
! | TATCATTTATCCCTTTGAAG+TGG | - | chr5_2:55594185-55594204 | Msa0776890:intron | 30.0% |
AACTTGCAAACAAAGACTAA+AGG | + | chr5_2:55594326-55594345 | None:intergenic | 30.0% | |
! | TTAGTCTTTGTTTGCAAGTT+AGG | - | chr5_2:55594326-55594345 | Msa0776890:intron | 30.0% |
TTTGCAAGTTAGGAGATAAA+GGG | - | chr5_2:55594336-55594355 | Msa0776890:intron | 30.0% | |
AGTAATATAAGAAGAGGGAA+AGG | - | chr5_2:55594469-55594488 | Msa0776890:intron | 30.0% | |
TCTCTACTCAACAAATTATG+AGG | + | chr5_2:55594900-55594919 | None:intergenic | 30.0% | |
! | CAAAATTAGAGAAGAGGTAT+AGG | + | chr5_2:55594939-55594958 | None:intergenic | 30.0% |
! | TTTTGAGCTAACCTATCATT+AGG | - | chr5_2:55594980-55594999 | Msa0776890:intron | 30.0% |
!! | TTGGTTCTGATTGGTTTATT+TGG | - | chr5_2:55595105-55595124 | Msa0776890:intron | 30.0% |
TGGGTTAACTTAATAAGGTT+GGG | + | chr5_2:55595150-55595169 | None:intergenic | 30.0% | |
!! | ACTAGTGGGTTAACTTAATA+AGG | + | chr5_2:55595155-55595174 | None:intergenic | 30.0% |
TAAACTCCCTCATTCAAATT+AGG | - | chr5_2:55595804-55595823 | Msa0776890:intron | 30.0% | |
AAACTCCCTCATTCAAATTA+GGG | - | chr5_2:55595805-55595824 | Msa0776890:intron | 30.0% | |
GATAATCCCTAATTTGAATG+AGG | + | chr5_2:55595814-55595833 | None:intergenic | 30.0% | |
ATATTGTGAAATAGCGGTTA+TGG | - | chr5_2:55596304-55596323 | Msa0776890:intron | 30.0% | |
! | AATAGCAGTTTGTTCAAACT+CGG | + | chr5_2:55596354-55596373 | None:intergenic | 30.0% |
GCAATTCACAACACTAAAAT+TGG | - | chr5_2:55596385-55596404 | Msa0776890:intron | 30.0% | |
AAATGTACTCTTATATCAGC+AGG | - | chr5_2:55596574-55596593 | Msa0776890:intron | 30.0% | |
AATTTGCCTTATGAAACTAC+CGG | - | chr5_2:55596662-55596681 | Msa0776890:intron | 30.0% | |
! | TATAATCATGGGATTTTGAG+GGG | + | chr5_2:55596834-55596853 | None:intergenic | 30.0% |
GGAAGTTAGATTAAAGTAGA+CGG | - | chr5_2:55596968-55596987 | Msa0776890:intron | 30.0% | |
TGAGAAATCTATCACATTTG+TGG | - | chr5_2:55596995-55597014 | Msa0776890:intron | 30.0% | |
GAGAAATCTATCACATTTGT+GGG | - | chr5_2:55596996-55597015 | Msa0776890:intron | 30.0% | |
! | TGATGTCTATTGATTGTATG+TGG | - | chr5_2:55597044-55597063 | Msa0776890:intron | 30.0% |
! | TCTCAGTTACTTTGTAAACT+AGG | - | chr5_2:55597097-55597116 | Msa0776890:CDS | 30.0% |
TAAAAACCATAGCATTGTCT+AGG | + | chr5_2:55597155-55597174 | None:intergenic | 30.0% | |
!!! | TTTTAGGTTTCAACGGTTCT+TGG | - | chr5_2:55591319-55591338 | Msa0776890:three_prime_UTR | 35.0% |
ATTACGTTGCTTGAGAGTTA+TGG | - | chr5_2:55591370-55591389 | Msa0776890:three_prime_UTR | 35.0% | |
!!! | GGTAGTTTTGGATTTGTGTT+AGG | - | chr5_2:55591436-55591455 | Msa0776890:CDS | 35.0% |
GCATTTCTTAGTTGGACAAT+GGG | - | chr5_2:55591539-55591558 | Msa0776890:CDS | 35.0% | |
CATAATAAGCCCATTTGGAT+TGG | + | chr5_2:55591757-55591776 | None:intergenic | 35.0% | |
!! | AACTGTGAGTTTTGTGATAC+AGG | - | chr5_2:55592198-55592217 | Msa0776890:CDS | 35.0% |
! | CATAACTTTTTACCGGATAC+AGG | + | chr5_2:55592227-55592246 | None:intergenic | 35.0% |
CTGATATACTCCCTACATAT+AGG | + | chr5_2:55592322-55592341 | None:intergenic | 35.0% | |
GTAGCACCTATTAGAAAAGA+TGG | - | chr5_2:55592640-55592659 | Msa0776890:intron | 35.0% | |
AGATGGTAGAAACTAGACTT+AGG | - | chr5_2:55592657-55592676 | Msa0776890:intron | 35.0% | |
AAACTAGACTTAGGTGGTTT+GGG | - | chr5_2:55592666-55592685 | Msa0776890:intron | 35.0% | |
TAGTTAGGAGAGTAGATTAG+TGG | - | chr5_2:55592717-55592736 | Msa0776890:intron | 35.0% | |
AGTTAGGAGAGTAGATTAGT+GGG | - | chr5_2:55592718-55592737 | Msa0776890:intron | 35.0% | |
AGTCAAATCACTAGAGGTAA+GGG | - | chr5_2:55592742-55592761 | Msa0776890:intron | 35.0% | |
GGATCTAGATATCTATGAGT+TGG | - | chr5_2:55592801-55592820 | Msa0776890:intron | 35.0% | |
! | TTGGAGAAAGACATGGTTTT+CGG | - | chr5_2:55592820-55592839 | Msa0776890:intron | 35.0% |
GGATCTAGATATCTATGAGT+TGG | - | chr5_2:55592801-55592820 | Msa0776890:intron | 35.0% | |
! | TTGGAGAAAGACATGGTTTT+CGG | - | chr5_2:55592820-55592839 | Msa0776890:intron | 35.0% |
! | TGGTTTTCGGTAGAACAATA+TGG | - | chr5_2:55592963-55592982 | Msa0776890:intron | 35.0% |
! | GCTCTTGATTTTTCATTTCG+GGG | - | chr5_2:55593171-55593190 | Msa0776890:intron | 35.0% |
! | CTCTTGATTTTTCATTTCGG+GGG | - | chr5_2:55593172-55593191 | Msa0776890:intron | 35.0% |
! | TCTTGATTTTTCATTTCGGG+GGG | - | chr5_2:55593173-55593192 | Msa0776890:intron | 35.0% |
!!! | GATTTTGTTTTGCTGGTCTT+GGG | - | chr5_2:55593208-55593227 | Msa0776890:intron | 35.0% |
!!! | ATTTTGTTTTGCTGGTCTTG+GGG | - | chr5_2:55593209-55593228 | Msa0776890:intron | 35.0% |
!! | TGTTCTATTTGTTGTCGTTG+TGG | - | chr5_2:55593298-55593317 | Msa0776890:intron | 35.0% |
GCTTATTCTCTCAATATGGA+AGG | - | chr5_2:55593345-55593364 | Msa0776890:intron | 35.0% | |
! | CTCTCAATATGGAAGGATTT+TGG | - | chr5_2:55593352-55593371 | Msa0776890:intron | 35.0% |
ACAGAATTCATGATGTCCAA+TGG | + | chr5_2:55593638-55593657 | None:intergenic | 35.0% | |
TCTTACAAGCGGCTATATTT+GGG | + | chr5_2:55593670-55593689 | None:intergenic | 35.0% | |
TTCTTACAAGCGGCTATATT+TGG | + | chr5_2:55593671-55593690 | None:intergenic | 35.0% | |
ATATTGAACATACTGCCAAC+AGG | + | chr5_2:55593829-55593848 | None:intergenic | 35.0% | |
! | TGTTTTCGTATGAAGTTACG+GGG | - | chr5_2:55593906-55593925 | Msa0776890:intron | 35.0% |
! | TGTTTCTTTTTCTTCTCCCT+TGG | + | chr5_2:55594062-55594081 | None:intergenic | 35.0% |
GGAGAAGAAAAAGAAACAAG+AGG | - | chr5_2:55594064-55594083 | Msa0776890:intron | 35.0% | |
GAGGATGATTATGGTTTGAA+AGG | + | chr5_2:55594120-55594139 | None:intergenic | 35.0% | |
ACAGACATTACCACTTCAAA+GGG | + | chr5_2:55594198-55594217 | None:intergenic | 35.0% | |
AACAGACATTACCACTTCAA+AGG | + | chr5_2:55594199-55594218 | None:intergenic | 35.0% | |
GTTTGCAAGTTAGGAGATAA+AGG | - | chr5_2:55594335-55594354 | Msa0776890:intron | 35.0% | |
TCTAAAAACACACCCAAACA+AGG | + | chr5_2:55594401-55594420 | None:intergenic | 35.0% | |
!!! | TTGTTTGGGTGTGTTTTTAG+AGG | - | chr5_2:55594400-55594419 | Msa0776890:intron | 35.0% |
ATAAGAAGAGGGAAAGGATA+TGG | - | chr5_2:55594475-55594494 | Msa0776890:intron | 35.0% | |
! | GAGAAGACTTGGAAATGTTT+TGG | + | chr5_2:55594518-55594537 | None:intergenic | 35.0% |
ACATGAATTGAGAGAAGACT+TGG | + | chr5_2:55594529-55594548 | None:intergenic | 35.0% | |
CTAACTCCCAAAAAAACCTT+CGG | - | chr5_2:55594592-55594611 | Msa0776890:intron | 35.0% | |
!!! | ATGCATCCGAAGGTTTTTTT+GGG | + | chr5_2:55594601-55594620 | None:intergenic | 35.0% |
!!! | AATGCATCCGAAGGTTTTTT+TGG | + | chr5_2:55594602-55594621 | None:intergenic | 35.0% |
ATTGTGCCTCATATATTGCT+TGG | - | chr5_2:55594687-55594706 | Msa0776890:intron | 35.0% | |
TAACCACCAAGCAATATATG+AGG | + | chr5_2:55594696-55594715 | None:intergenic | 35.0% | |
! | ATAGGTTAGCTCAAAAAGCT+TGG | + | chr5_2:55594976-55594995 | None:intergenic | 35.0% |
! | ACTGAGCAGAATTAGTTCTT+TGG | + | chr5_2:55595033-55595052 | None:intergenic | 35.0% |
CAACTGATATGCAACTAACA+TGG | - | chr5_2:55595054-55595073 | Msa0776890:intron | 35.0% | |
GTTCAACTGAACCATATTTC+TGG | - | chr5_2:55595081-55595100 | Msa0776890:intron | 35.0% | |
!! | ACTGAACCATATTTCTGGTT+TGG | - | chr5_2:55595086-55595105 | Msa0776890:intron | 35.0% |
TCAGAACCAAACCAGAAATA+TGG | + | chr5_2:55595095-55595114 | None:intergenic | 35.0% | |
!! | ATTTCTGGTTTGGTTCTGAT+TGG | - | chr5_2:55595096-55595115 | Msa0776890:intron | 35.0% |
! | GTGGGTTAACTTAATAAGGT+TGG | + | chr5_2:55595151-55595170 | None:intergenic | 35.0% |
!!! | AACATGGGGTGGATTTTTTT+AGG | + | chr5_2:55595363-55595382 | None:intergenic | 35.0% |
!! | CCTAGTTTTCCATATTGTGT+GGG | + | chr5_2:55595390-55595409 | None:intergenic | 35.0% |
ACAGCTTAACAGTTTATGTC+TGG | + | chr5_2:55595498-55595517 | None:intergenic | 35.0% | |
! | AATGTATTGGAGGAAGCTTT+TGG | + | chr5_2:55595738-55595757 | None:intergenic | 35.0% |
GAACTCAAGAAATGTATTGG+AGG | + | chr5_2:55595748-55595767 | None:intergenic | 35.0% | |
TACAAAATCCCCCATATTTG+GGG | + | chr5_2:55595771-55595790 | None:intergenic | 35.0% | |
CTACAAAATCCCCCATATTT+GGG | + | chr5_2:55595772-55595791 | None:intergenic | 35.0% | |
ACTACAAAATCCCCCATATT+TGG | + | chr5_2:55595773-55595792 | None:intergenic | 35.0% | |
AAGGAAGAAGGAAAGAGAAA+TGG | + | chr5_2:55595844-55595863 | None:intergenic | 35.0% | |
TTTGTTTGGGAGTTAAAGAG+GGG | + | chr5_2:55595886-55595905 | None:intergenic | 35.0% | |
GTTTGTTTGGGAGTTAAAGA+GGG | + | chr5_2:55595887-55595906 | None:intergenic | 35.0% | |
! | GCATACTTAAGGGTTTGTTT+GGG | + | chr5_2:55595899-55595918 | None:intergenic | 35.0% |
CAAGATCAGAAAGTGATGAT+GGG | + | chr5_2:55595924-55595943 | None:intergenic | 35.0% | |
ACAAGATCAGAAAGTGATGA+TGG | + | chr5_2:55595925-55595944 | None:intergenic | 35.0% | |
AAACAATCTTCTGTGCCTAA+TGG | - | chr5_2:55596058-55596077 | Msa0776890:intron | 35.0% | |
! | TTTTTGCTGGAGAGAAAATC+AGG | + | chr5_2:55596150-55596169 | None:intergenic | 35.0% |
GTAAACTCTATGCAATCTAG+AGG | + | chr5_2:55596178-55596197 | None:intergenic | 35.0% | |
ACGTACTAAATAGCGTATCA+GGG | + | chr5_2:55596283-55596302 | None:intergenic | 35.0% | |
TACGTACTAAATAGCGTATC+AGG | + | chr5_2:55596284-55596303 | None:intergenic | 35.0% | |
CAACACTAAAATTGGGTCAT+CGG | - | chr5_2:55596393-55596412 | Msa0776890:intron | 35.0% | |
AACACTAAAATTGGGTCATC+GGG | - | chr5_2:55596394-55596413 | Msa0776890:intron | 35.0% | |
AAATCTACAAATGCGATACC+TGG | + | chr5_2:55596755-55596774 | None:intergenic | 35.0% | |
! | GCAAATTTTGCGTACTGTAT+TGG | - | chr5_2:55596902-55596921 | Msa0776890:intron | 35.0% |
TGCAGAAGTTGTAAGTTTAC+AGG | - | chr5_2:55596947-55596966 | Msa0776890:intron | 35.0% | |
TGAACTGGGCATTTCTTAGT+TGG | - | chr5_2:55591531-55591550 | Msa0776890:CDS | 40.0% | |
GGCATTTCTTAGTTGGACAA+TGG | - | chr5_2:55591538-55591557 | Msa0776890:CDS | 40.0% | |
TCGAAGAGTAACTTTGAGCA+GGG | + | chr5_2:55592149-55592168 | None:intergenic | 40.0% | |
TGATACAGGTATCCTGTATC+CGG | - | chr5_2:55592212-55592231 | Msa0776890:CDS | 40.0% | |
TTGTCATATGTACGGGACAA+AGG | - | chr5_2:55592486-55592505 | Msa0776890:intron | 40.0% | |
TGTCATATGTACGGGACAAA+GGG | - | chr5_2:55592487-55592506 | Msa0776890:intron | 40.0% | |
AATTAAGCGTAGCAGAGATG+AGG | - | chr5_2:55592539-55592558 | Msa0776890:intron | 40.0% | |
AGGATGTTGCATACTTGCAT+TGG | - | chr5_2:55592559-55592578 | Msa0776890:intron | 40.0% | |
TGGTAGAAACTAGACTTAGG+TGG | - | chr5_2:55592660-55592679 | Msa0776890:intron | 40.0% | |
GAAACTAGACTTAGGTGGTT+TGG | - | chr5_2:55592665-55592684 | Msa0776890:intron | 40.0% | |
GTTAGGAGAGTAGATTAGTG+GGG | - | chr5_2:55592719-55592738 | Msa0776890:intron | 40.0% | |
GAGTCAAATCACTAGAGGTA+AGG | - | chr5_2:55592741-55592760 | Msa0776890:intron | 40.0% | |
! | CTATGAGTTGGAGAAAGACA+TGG | - | chr5_2:55592813-55592832 | Msa0776890:intron | 40.0% |
! | TGGTTTTCGGTAGAACACTA+TGG | - | chr5_2:55592833-55592852 | Msa0776890:intron | 40.0% |
! | CTATGAGTTGGAGAAAGACA+TGG | - | chr5_2:55592813-55592832 | Msa0776890:intron | 40.0% |
TTGACGTATGATAGAGGACT+CGG | - | chr5_2:55593115-55593134 | Msa0776890:intron | 40.0% | |
CTCGGTCCCCATATATATAT+TGG | - | chr5_2:55593133-55593152 | Msa0776890:intron | 40.0% | |
TTTCGGGGGGATATTGTAAT+TGG | - | chr5_2:55593186-55593205 | Msa0776890:intron | 40.0% | |
!!! | GGATTTTGTTTTGCTGGTCT+TGG | - | chr5_2:55593207-55593226 | Msa0776890:intron | 40.0% |
!!! | TTTTGTTTTGCTGGTCTTGG+GGG | - | chr5_2:55593210-55593229 | Msa0776890:intron | 40.0% |
CACTGTAAGATAACTTGAGC+AGG | + | chr5_2:55593582-55593601 | None:intergenic | 40.0% | |
TAGCCGCTTGTAAGAATTCT+TGG | - | chr5_2:55593675-55593694 | Msa0776890:intron | 40.0% | |
AAGAGGAGAAAGGTGAAGAA+TGG | - | chr5_2:55594081-55594100 | Msa0776890:intron | 40.0% | |
!!! | AGGTTTTTTTGGGAGTTAGG+TGG | + | chr5_2:55594591-55594610 | None:intergenic | 40.0% |
!!! | CGAAGGTTTTTTTGGGAGTT+AGG | + | chr5_2:55594594-55594613 | None:intergenic | 40.0% |
TGTGAGTATGTGAGAAAGAG+AGG | - | chr5_2:55594853-55594872 | Msa0776890:CDS | 40.0% | |
GTGAGTATGTGAGAAAGAGA+GGG | - | chr5_2:55594854-55594873 | Msa0776890:CDS | 40.0% | |
TGAGTATGTGAGAAAGAGAG+GGG | - | chr5_2:55594855-55594874 | Msa0776890:CDS | 40.0% | |
ACCTATCATTAGGTCTGTTC+TGG | - | chr5_2:55594990-55595009 | Msa0776890:intron | 40.0% | |
ACCAGAACAGACCTAATGAT+AGG | + | chr5_2:55594994-55595013 | None:intergenic | 40.0% | |
!!! | ATTTTTTTAGGTGGGGGATG+AGG | + | chr5_2:55595351-55595370 | None:intergenic | 40.0% |
!!! | TGGGGTGGATTTTTTTAGGT+GGG | + | chr5_2:55595359-55595378 | None:intergenic | 40.0% |
!!! | ATGGGGTGGATTTTTTTAGG+TGG | + | chr5_2:55595360-55595379 | None:intergenic | 40.0% |
! | GTTTTCCATATTGTGTGGGA+GGG | + | chr5_2:55595386-55595405 | None:intergenic | 40.0% |
! | AGTTTTCCATATTGTGTGGG+AGG | + | chr5_2:55595387-55595406 | None:intergenic | 40.0% |
CCCACACAATATGGAAAACT+AGG | - | chr5_2:55595387-55595406 | Msa0776890:intron | 40.0% | |
!! | GCCTAGTTTTCCATATTGTG+TGG | + | chr5_2:55595391-55595410 | None:intergenic | 40.0% |
! | TATTGGAGGAAGCTTTTGGA+GGG | + | chr5_2:55595734-55595753 | None:intergenic | 40.0% |
GGGGAACTCAAGAAATGTAT+TGG | + | chr5_2:55595751-55595770 | None:intergenic | 40.0% | |
TTCTTGAGTTCCCCCAAATA+TGG | - | chr5_2:55595757-55595776 | Msa0776890:intron | 40.0% | |
TCTTGAGTTCCCCCAAATAT+GGG | - | chr5_2:55595758-55595777 | Msa0776890:intron | 40.0% | |
ACAAAATCCCCCATATTTGG+GGG | + | chr5_2:55595770-55595789 | None:intergenic | 40.0% | |
! | TGGGGGATTTTGTAGTATGA+AGG | - | chr5_2:55595777-55595796 | Msa0776890:intron | 40.0% |
TGCTTAGGGTAAAAGGAAGA+AGG | + | chr5_2:55595856-55595875 | None:intergenic | 40.0% | |
! | GGTTTGTTTGGGAGTTAAAG+AGG | + | chr5_2:55595888-55595907 | None:intergenic | 40.0% |
! | GGCATACTTAAGGGTTTGTT+TGG | + | chr5_2:55595900-55595919 | None:intergenic | 40.0% |
! | ATGATGGGAGGCATACTTAA+GGG | + | chr5_2:55595909-55595928 | None:intergenic | 40.0% |
! | TCTAGAGGCAAAGTTTTTGC+TGG | + | chr5_2:55596163-55596182 | None:intergenic | 40.0% |
TTGTGAAATAGCGGTTATGG+AGG | - | chr5_2:55596307-55596326 | Msa0776890:intron | 40.0% | |
GTGTTGTGAATTGCAGATTG+TGG | + | chr5_2:55596379-55596398 | None:intergenic | 40.0% | |
CGAGACTAGTGATACAAACA+TGG | + | chr5_2:55596421-55596440 | None:intergenic | 40.0% | |
! | CGAACAATACCCAGGTTTTA+AGG | - | chr5_2:55596706-55596725 | Msa0776890:intron | 40.0% |
CATTGACCTAGACAATGCTA+TGG | - | chr5_2:55597146-55597165 | Msa0776890:five_prime_UTR | 40.0% | |
!! | TGAAAGCATCCTCTCTGGTT+TGG | + | chr5_2:55591161-55591180 | None:intergenic | 45.0% |
AAACCAGAGAGGATGCTTTC+AGG | - | chr5_2:55591160-55591179 | Msa0776890:three_prime_UTR | 45.0% | |
AACCAGAGAGGATGCTTTCA+GGG | - | chr5_2:55591161-55591180 | Msa0776890:three_prime_UTR | 45.0% | |
CTCGAAGAGTAACTTTGAGC+AGG | + | chr5_2:55592150-55592169 | None:intergenic | 45.0% | |
ATATGTACGGGACAAAGGGT+TGG | - | chr5_2:55592491-55592510 | Msa0776890:intron | 45.0% | |
GCATACTTGCATTGGATGTG+TGG | - | chr5_2:55592567-55592586 | Msa0776890:intron | 45.0% | |
GATGTGTGGTAAGACTAGAC+TGG | - | chr5_2:55592581-55592600 | Msa0776890:intron | 45.0% | |
GACAACATTAGAGAAAGGCG+AGG | - | chr5_2:55592618-55592637 | Msa0776890:intron | 45.0% | |
! | TAAGCCTTATCCCACCAAGT+GGG | + | chr5_2:55592883-55592902 | None:intergenic | 45.0% |
!! | AAGAGGGAAGCTTTGTTCCA+AGG | - | chr5_2:55594042-55594061 | Msa0776890:intron | 45.0% |
!! | AGAGGGAAGCTTTGTTCCAA+GGG | - | chr5_2:55594043-55594062 | Msa0776890:intron | 45.0% |
GCAAGTTAGGAGATAAAGGG+AGG | - | chr5_2:55594339-55594358 | Msa0776890:intron | 45.0% | |
TAAAGGGAGGTGAGAGCTTT+AGG | - | chr5_2:55594352-55594371 | Msa0776890:intron | 45.0% | |
AAAGGGAGGTGAGAGCTTTA+GGG | - | chr5_2:55594353-55594372 | Msa0776890:intron | 45.0% | |
! | TTCATGTTCGAGTTCCTCCA+TGG | - | chr5_2:55594542-55594561 | Msa0776890:intron | 45.0% |
! | TCATGTTCGAGTTCCTCCAT+GGG | - | chr5_2:55594543-55594562 | Msa0776890:intron | 45.0% |
GAAAGGAAGATAGTTCCCCA+TGG | + | chr5_2:55594562-55594581 | None:intergenic | 45.0% | |
! | TGTGTCTGAAATGCATCCGA+AGG | + | chr5_2:55594611-55594630 | None:intergenic | 45.0% |
GTGCCTCATATATTGCTTGG+TGG | - | chr5_2:55594690-55594709 | Msa0776890:intron | 45.0% | |
TATGTGAGAAAGAGAGGGGA+GGG | - | chr5_2:55594859-55594878 | Msa0776890:CDS | 45.0% | |
!!! | GGGTGGATTTTTTTAGGTGG+GGG | + | chr5_2:55595357-55595376 | None:intergenic | 45.0% |
!!! | GGGGTGGATTTTTTTAGGTG+GGG | + | chr5_2:55595358-55595377 | None:intergenic | 45.0% |
TATTGTGTGGGAGGGAACAT+GGG | + | chr5_2:55595378-55595397 | None:intergenic | 45.0% | |
ATATTGTGTGGGAGGGAACA+TGG | + | chr5_2:55595379-55595398 | None:intergenic | 45.0% | |
ATGTTCCCTCCCACACAATA+TGG | - | chr5_2:55595378-55595397 | Msa0776890:intron | 45.0% | |
CTCTAGTTGCGAGTTTGTAG+TGG | - | chr5_2:55595546-55595565 | Msa0776890:intron | 45.0% | |
TAGTTGCGAGTTTGTAGTGG+AGG | - | chr5_2:55595549-55595568 | Msa0776890:intron | 45.0% | |
! | AGTTGCGAGTTTGTAGTGGA+GGG | - | chr5_2:55595550-55595569 | Msa0776890:intron | 45.0% |
! | AGTTTGTAGTGGAGGGCTTT+GGG | - | chr5_2:55595557-55595576 | Msa0776890:intron | 45.0% |
! | GTATTGGAGGAAGCTTTTGG+AGG | + | chr5_2:55595735-55595754 | None:intergenic | 45.0% |
CTTGAGTTCCCCCAAATATG+GGG | - | chr5_2:55595759-55595778 | Msa0776890:intron | 45.0% | |
TTGAGTTCCCCCAAATATGG+GGG | - | chr5_2:55595760-55595779 | Msa0776890:intron | 45.0% | |
!! | AGGAGAGTGCTTAGGGTAAA+AGG | + | chr5_2:55595863-55595882 | None:intergenic | 45.0% |
!! | GATGATGGGAGGCATACTTA+AGG | + | chr5_2:55595910-55595929 | None:intergenic | 45.0% |
!! | GATCAGAAAGTGATGATGGG+AGG | + | chr5_2:55595921-55595940 | None:intergenic | 45.0% |
TCTGCACAGCTGAGAAAAAG+AGG | - | chr5_2:55596020-55596039 | Msa0776890:intron | 45.0% | |
CAATCTTCTGTGCCTAATGG+TGG | - | chr5_2:55596061-55596080 | Msa0776890:intron | 45.0% | |
TAACGGCTACAGTAGTGCTA+TGG | - | chr5_2:55596218-55596237 | Msa0776890:intron | 45.0% | |
CAAACTCGGCTACACAACAA+TGG | + | chr5_2:55596340-55596359 | None:intergenic | 45.0% | |
ATCCTGCCGGTAGTTTCATA+AGG | + | chr5_2:55596671-55596690 | None:intergenic | 45.0% | |
ATGCTCTTCGAACAATACCC+AGG | - | chr5_2:55596698-55596717 | Msa0776890:intron | 45.0% | |
AGCGCACTTCCTTAAAACCT+GGG | + | chr5_2:55596718-55596737 | None:intergenic | 45.0% | |
AAGCGCACTTCCTTAAAACC+TGG | + | chr5_2:55596719-55596738 | None:intergenic | 45.0% | |
AGATGAGGCACAATCATCCA+TGG | - | chr5_2:55596778-55596797 | Msa0776890:intron | 45.0% | |
ACAATCATCCATGGCAATGC+AGG | - | chr5_2:55596787-55596806 | Msa0776890:intron | 45.0% | |
GGGAAGATTGAGATAGTGCT+TGG | - | chr5_2:55597016-55597035 | Msa0776890:intron | 45.0% | |
! | TCGACTCGACTATCGAGCTA+GGG | - | chr5_2:55591105-55591124 | Msa0776890:three_prime_UTR | 50.0% |
!! | CCTCTCTGGTTTGGTTCTGA+TGG | + | chr5_2:55591152-55591171 | None:intergenic | 50.0% |
CCATCAGAACCAAACCAGAG+AGG | - | chr5_2:55591149-55591168 | Msa0776890:three_prime_UTR | 50.0% | |
ACCAGAGAGGATGCTTTCAG+GGG | - | chr5_2:55591162-55591181 | Msa0776890:three_prime_UTR | 50.0% | |
AGTTGGACAATGGGTCCGTT+TGG | - | chr5_2:55591548-55591567 | Msa0776890:CDS | 50.0% | |
GGCATGTAGAGAGAAGACCT+GGG | - | chr5_2:55592687-55592706 | Msa0776890:intron | 50.0% | |
GCATGTAGAGAGAAGACCTG+GGG | - | chr5_2:55592688-55592707 | Msa0776890:intron | 50.0% | |
GTGGGGAGTCAAATCACTAG+AGG | - | chr5_2:55592736-55592755 | Msa0776890:intron | 50.0% | |
! | AAGCCTTATCCCACCAAGTG+GGG | + | chr5_2:55592882-55592901 | None:intergenic | 50.0% |
! | GTAAGCCTTATCCCACCAAG+TGG | + | chr5_2:55592884-55592903 | None:intergenic | 50.0% |
! | AAGCCTTATCCCACCAAGTG+GGG | + | chr5_2:55592882-55592901 | None:intergenic | 50.0% |
! | CAAGCCTTATCCCACCAAGT+GGG | + | chr5_2:55593013-55593032 | None:intergenic | 50.0% |
CTAAAGACGCCTAAGCTTCG+AGG | - | chr5_2:55593386-55593405 | Msa0776890:intron | 50.0% | |
TAAGCTTCGAGGACAGGCAT+GGG | - | chr5_2:55593397-55593416 | Msa0776890:intron | 50.0% | |
CATCTGTCGCACTGCATTAC+TGG | + | chr5_2:55593447-55593466 | None:intergenic | 50.0% | |
!! | AGAGCTTTAGGGAGAGACGA+GGG | - | chr5_2:55594364-55594383 | Msa0776890:intron | 50.0% |
!! | GGGAATACCTCGCCTTGTTT+GGG | - | chr5_2:55594386-55594405 | Msa0776890:intron | 50.0% |
AAACACACCCAAACAAGGCG+AGG | + | chr5_2:55594396-55594415 | None:intergenic | 50.0% | |
TTAGAGGTGAGCAGTCGAGA+AGG | - | chr5_2:55594416-55594435 | Msa0776890:intron | 50.0% | |
! | CATGTTCGAGTTCCTCCATG+GGG | - | chr5_2:55594544-55594563 | Msa0776890:intron | 50.0% |
AGGAAGATAGTTCCCCATGG+AGG | + | chr5_2:55594559-55594578 | None:intergenic | 50.0% | |
GAGTTAGGTGGAGACAGGAA+AGG | + | chr5_2:55594579-55594598 | None:intergenic | 50.0% | |
TTTGGGAGTTAGGTGGAGAC+AGG | + | chr5_2:55594584-55594603 | None:intergenic | 50.0% | |
GTATGTGAGAAAGAGAGGGG+AGG | - | chr5_2:55594858-55594877 | Msa0776890:CDS | 50.0% | |
ATTGTGTGGGAGGGAACATG+GGG | + | chr5_2:55595377-55595396 | None:intergenic | 50.0% | |
! | GAGTTTGTAGTGGAGGGCTT+TGG | - | chr5_2:55595556-55595575 | Msa0776890:intron | 50.0% |
! | GTTTGTAGTGGAGGGCTTTG+GGG | - | chr5_2:55595558-55595577 | Msa0776890:intron | 50.0% |
! | TTTGTAGTGGAGGGCTTTGG+GGG | - | chr5_2:55595559-55595578 | Msa0776890:intron | 50.0% |
GTTTGGGAGTTAAAGAGGGG+AGG | + | chr5_2:55595883-55595902 | None:intergenic | 50.0% | |
! | GTGCCTAATGGTGGAACACA+TGG | - | chr5_2:55596070-55596089 | Msa0776890:intron | 50.0% |
GCACCATGTGTTCCACCATT+AGG | + | chr5_2:55596076-55596095 | None:intergenic | 50.0% | |
GCTATGGCGCTATTGCATAG+CGG | - | chr5_2:55596234-55596253 | Msa0776890:intron | 50.0% | |
TGCCTTATGAAACTACCGGC+AGG | - | chr5_2:55596666-55596685 | Msa0776890:intron | 50.0% | |
TTGTAGAGCCTGCATTGCCA+TGG | + | chr5_2:55596798-55596817 | None:intergenic | 50.0% | |
ATGGCAATGCAGGCTCTACA+AGG | - | chr5_2:55596797-55596816 | Msa0776890:intron | 50.0% | |
! | CTCGACTCGACTATCGAGCT+AGG | - | chr5_2:55591104-55591123 | Msa0776890:three_prime_UTR | 55.0% |
!! | TCCCCTGAAAGCATCCTCTC+TGG | + | chr5_2:55591166-55591185 | None:intergenic | 55.0% |
GTACGGGACAAAGGGTTGGA+CGG | - | chr5_2:55592495-55592514 | Msa0776890:intron | 55.0% | |
GGGCATGTAGAGAGAAGACC+TGG | - | chr5_2:55592686-55592705 | Msa0776890:intron | 55.0% | |
GACCTGGGGATGCTGTAGTT+AGG | - | chr5_2:55592702-55592721 | Msa0776890:intron | 55.0% | |
CTCCTAACTACAGCATCCCC+AGG | + | chr5_2:55592707-55592726 | None:intergenic | 55.0% | |
TGTATGTAGCCGACCCCACT+TGG | - | chr5_2:55592866-55592885 | Msa0776890:intron | 55.0% | |
CTTATCCCACCAAGTGGGGT+CGG | + | chr5_2:55592878-55592897 | None:intergenic | 55.0% | |
TGTATGTAGCCGACCCCACT+TGG | - | chr5_2:55592866-55592885 | Msa0776890:intron | 55.0% | |
CTTATCCCACCAAGTGGGGT+CGG | + | chr5_2:55592878-55592897 | None:intergenic | 55.0% | |
! | CCAAGCCTTATCCCACCAAG+TGG | + | chr5_2:55593014-55593033 | None:intergenic | 55.0% |
! | CCACTTGGTGGGATAAGGCT+TGG | - | chr5_2:55592881-55592900 | Msa0776890:intron | 55.0% |
CATGCCTGTCCTCGAAGCTT+AGG | + | chr5_2:55593398-55593417 | None:intergenic | 55.0% | |
CTAAGCTTCGAGGACAGGCA+TGG | - | chr5_2:55593396-55593415 | Msa0776890:intron | 55.0% | |
!! | GAGAGCTTTAGGGAGAGACG+AGG | - | chr5_2:55594363-55594382 | Msa0776890:intron | 55.0% |
!! | GAGCTTTAGGGAGAGACGAG+GGG | - | chr5_2:55594365-55594384 | Msa0776890:intron | 55.0% |
!! | AGCTTTAGGGAGAGACGAGG+GGG | - | chr5_2:55594366-55594385 | Msa0776890:intron | 55.0% |
! | GGGGAATACCTCGCCTTGTT+TGG | - | chr5_2:55594385-55594404 | Msa0776890:intron | 55.0% |
TCGAGAAGGAGGCTTACGAG+TGG | - | chr5_2:55594430-55594449 | Msa0776890:intron | 55.0% | |
AGAAAGAGAGGGGAGGGAAG+AGG | - | chr5_2:55594865-55594884 | Msa0776890:CDS | 55.0% | |
GAAAGAGAGGGGAGGGAAGA+GGG | - | chr5_2:55594866-55594885 | Msa0776890:CDS | 55.0% | |
AAAGAGAGGGGAGGGAAGAG+GGG | - | chr5_2:55594867-55594886 | Msa0776890:CDS | 55.0% | |
GTGGGGGATGAGGAAACTGA+TGG | + | chr5_2:55595341-55595360 | None:intergenic | 55.0% | |
!! | TTGTAGTGGAGGGCTTTGGG+GGG | - | chr5_2:55595560-55595579 | Msa0776890:intron | 55.0% |
TTTGGGGGGAGGGAAGTAGA+GGG | - | chr5_2:55595574-55595593 | Msa0776890:intron | 55.0% | |
!! | AGAGGGGAGGAGAGTGCTTA+GGG | + | chr5_2:55595870-55595889 | None:intergenic | 55.0% |
!! | AAGAGGGGAGGAGAGTGCTT+AGG | + | chr5_2:55595871-55595890 | None:intergenic | 55.0% |
GAGCATTTCGAGCATCCTGC+CGG | + | chr5_2:55596684-55596703 | None:intergenic | 55.0% | |
CGCTTGATCGAAGCAAAGCC+AGG | - | chr5_2:55596734-55596753 | Msa0776890:intron | 55.0% | |
ATGTAGCCGACCCCACTTGG+TGG | - | chr5_2:55592869-55592888 | Msa0776890:intron | 60.0% | |
TGTAGCCGACCCCACTTGGT+GGG | - | chr5_2:55592870-55592889 | Msa0776890:intron | 60.0% | |
! | CGACCCCACTTGGTGGGATA+AGG | - | chr5_2:55592876-55592895 | Msa0776890:intron | 60.0% |
ATGTAGCCGACCCCACTTGG+TGG | - | chr5_2:55592869-55592888 | Msa0776890:intron | 60.0% | |
TGTAGCCGACCCCACTTGGT+GGG | - | chr5_2:55592870-55592889 | Msa0776890:intron | 60.0% | |
! | CGACCCCACTTGGTGGGATA+AGG | - | chr5_2:55592876-55592895 | Msa0776890:intron | 60.0% |
GACGCCTAAGCTTCGAGGAC+AGG | - | chr5_2:55593391-55593410 | Msa0776890:intron | 60.0% | |
GAGGTGAGCAGTCGAGAAGG+AGG | - | chr5_2:55594419-55594438 | Msa0776890:intron | 60.0% | |
! | CTTTGGGGGGAGGGAAGTAG+AGG | - | chr5_2:55595573-55595592 | Msa0776890:intron | 60.0% |
AGCAGGCCTCATTCCGTCCA+GGG | - | chr5_2:55596591-55596610 | Msa0776890:intron | 60.0% | |
GTTGGGAGCAGCTGCCTCTT+GGG | + | chr5_2:55596624-55596643 | None:intergenic | 60.0% | |
TGTTGGGAGCAGCTGCCTCT+TGG | + | chr5_2:55596625-55596644 | None:intergenic | 60.0% | |
GTGTGGGAGGGAACATGGGG+TGG | + | chr5_2:55595374-55595393 | None:intergenic | 65.0% | |
!! | TAGTGGAGGGCTTTGGGGGG+AGG | - | chr5_2:55595563-55595582 | Msa0776890:intron | 65.0% |
!! | AGTGGAGGGCTTTGGGGGGA+GGG | - | chr5_2:55595564-55595583 | Msa0776890:intron | 65.0% |
CAGCAGGCCTCATTCCGTCC+AGG | - | chr5_2:55596590-55596609 | Msa0776890:intron | 65.0% | |
GCCTCATTCCGTCCAGGGTC+CGG | - | chr5_2:55596596-55596615 | Msa0776890:intron | 65.0% | |
ACCGGACCCTGGACGGAATG+AGG | + | chr5_2:55596600-55596619 | None:intergenic | 65.0% | |
AGCAGCTGCCTCTTGGGCAC+CGG | + | chr5_2:55596618-55596637 | None:intergenic | 65.0% | |
!! | CTTGGGCACCGGACCCTGGA+CGG | + | chr5_2:55596607-55596626 | None:intergenic | 70.0% |
TCCAGGGTCCGGTGCCCAAG+AGG | - | chr5_2:55596607-55596626 | Msa0776890:intron | 70.0% | |
!! | GCCTCTTGGGCACCGGACCC+TGG | + | chr5_2:55596611-55596630 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 55591104 | 55597189 | 55591104 | ID=Msa0776890;Name=Msa0776890 |
chr5_2 | mRNA | 55591104 | 55597189 | 55591104 | ID=Msa0776890-mRNA-1;Parent=Msa0776890;Name=Msa0776890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=68|1|1|1|0.5|0.8|5|318|234 |
chr5_2 | exon | 55591104 | 55591700 | 55591104 | ID=Msa0776890-mRNA-1:exon:16435;Parent=Msa0776890-mRNA-1 |
chr5_2 | exon | 55592179 | 55592264 | 55592179 | ID=Msa0776890-mRNA-1:exon:16434;Parent=Msa0776890-mRNA-1 |
chr5_2 | exon | 55594201 | 55594294 | 55594201 | ID=Msa0776890-mRNA-1:exon:16433;Parent=Msa0776890-mRNA-1 |
chr5_2 | exon | 55594797 | 55594969 | 55594797 | ID=Msa0776890-mRNA-1:exon:16432;Parent=Msa0776890-mRNA-1 |
chr5_2 | exon | 55597049 | 55597189 | 55597049 | ID=Msa0776890-mRNA-1:exon:16431;Parent=Msa0776890-mRNA-1 |
chr5_2 | five_prime_UTR | 55597122 | 55597189 | 55597122 | ID=Msa0776890-mRNA-1:five_prime_utr;Parent=Msa0776890-mRNA-1 |
chr5_2 | CDS | 55597049 | 55597121 | 55597049 | ID=Msa0776890-mRNA-1:cds;Parent=Msa0776890-mRNA-1 |
chr5_2 | CDS | 55594797 | 55594969 | 55594797 | ID=Msa0776890-mRNA-1:cds;Parent=Msa0776890-mRNA-1 |
chr5_2 | CDS | 55594201 | 55594294 | 55594201 | ID=Msa0776890-mRNA-1:cds;Parent=Msa0776890-mRNA-1 |
chr5_2 | CDS | 55592179 | 55592264 | 55592179 | ID=Msa0776890-mRNA-1:cds;Parent=Msa0776890-mRNA-1 |
chr5_2 | CDS | 55591422 | 55591700 | 55591422 | ID=Msa0776890-mRNA-1:cds;Parent=Msa0776890-mRNA-1 |
chr5_2 | three_prime_UTR | 55591104 | 55591421 | 55591104 | ID=Msa0776890-mRNA-1:three_prime_utr;Parent=Msa0776890-mRNA-1 |
Gene Sequence |
Protein sequence |