AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0776890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776890 MtrunA17_Chr5g0432171 98.291 234 4 0 1 234 1 234 2.37e-174 478
Msa0776890 MtrunA17_Chr1g0176901 94.944 178 8 1 57 234 2 178 2.38e-111 317
Msa0776890 MtrunA17_Chr4g0044291 59.829 234 88 1 7 234 11 244 6.83e-100 290
Msa0776890 MtrunA17_Chr7g0269401 57.764 161 57 4 83 234 3 161 2.59e-55 174
Msa0776890 MtrunA17_Chr7g0269411 65.432 81 28 0 7 87 11 91 8.86e-35 120
Msa0776890 MtrunA17_Chr4g0044321 62.195 82 31 0 9 90 13 94 3.82e-28 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776890 AT2G30260.1 69.492 236 66 3 1 234 1 232 1.64e-123 350
Msa0776890 AT1G06960.1 72.222 234 60 2 1 234 1 229 1.08e-120 343
Msa0776890 AT1G06960.3 69.849 199 55 2 36 234 7 200 2.58e-95 277
Msa0776890 AT2G47580.1 56.485 239 94 3 5 234 13 250 1.81e-87 259
Msa0776890 AT2G30260.2 71.631 141 35 1 1 141 1 136 7.04e-72 216
Msa0776890 AT1G06960.2 78.195 133 29 0 1 133 1 133 2.42e-70 213
Msa0776890 AT1G06960.5 82.524 103 18 0 1 103 1 103 9.05e-63 192
Msa0776890 AT1G06960.4 65.789 152 47 2 83 234 4 150 7.24e-61 188
Msa0776890 AT1G06960.6 75.510 98 24 0 36 133 7 104 5.08e-45 147

Find 67 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCAATATGGAAGGATTT+TGG 0.143011 5_2:-55594919 Msa0776890:CDS
GCAAAATTTGCTTTGAATAT+TGG 0.195857 5_2:+55591381 None:intergenic
ATTGAGATTCTTAATGTAAA+TGG 0.200962 5_2:+55597068 None:intergenic
CATCTGTCGCACTGCATTAC+TGG 0.268948 5_2:+55594827 None:intergenic
TGCAGAAGTTGTAAGTTTAC+AGG 0.291868 5_2:-55591324 Msa0776890:three_prime_UTR
TATTGCTTATTCTCTCAATA+TGG 0.294966 5_2:-55594930 Msa0776890:CDS
AAACCAGAGAGGATGCTTTC+AGG 0.319590 5_2:-55597111 Msa0776890:exon
TTAATGTAAATGGTTTGATT+TGG 0.322185 5_2:+55597078 None:intergenic
CTTAGCAAAGTTTATAATCA+TGG 0.324640 5_2:+55591428 None:intergenic
TGAAAGCATCCTCTCTGGTT+TGG 0.356331 5_2:+55597113 None:intergenic
GCCTCTTGGGCACCGGACCC+TGG 0.364979 5_2:+55591663 None:intergenic
CTCTATGAACAAAATATTGT+TGG 0.365120 5_2:+55591632 None:intergenic
TGTTGGGAGCAGCTGCCTCT+TGG 0.368601 5_2:+55591649 None:intergenic
GTTGGGAGCAGCTGCCTCTT+GGG 0.371933 5_2:+55591650 None:intergenic
GCACCATGTGTTCCACCATT+AGG 0.384777 5_2:+55592198 None:intergenic
CCTCTCTGGTTTGGTTCTGA+TGG 0.397079 5_2:+55597122 None:intergenic
GCCTCATTCCGTCCAGGGTC+CGG 0.398715 5_2:-55591675 Msa0776890:CDS
ATGTAAATGGTTTGATTTGG+AGG 0.406769 5_2:+55597081 None:intergenic
AAACAATCTTCTGTGCCTAA+TGG 0.424244 5_2:-55592213 Msa0776890:CDS
TCTCAGTTACTTTGTAAACT+AGG 0.426990 5_2:-55591174 Msa0776890:three_prime_UTR
TGAGAAATCTATCACATTTG+TGG 0.431750 5_2:-55591276 Msa0776890:three_prime_UTR
AACCAGAGAGGATGCTTTCA+GGG 0.433914 5_2:-55597110 Msa0776890:exon
AGCAGCTGCCTCTTGGGCAC+CGG 0.444275 5_2:+55591656 None:intergenic
ACAATCATCCATGGCAATGC+AGG 0.453318 5_2:-55591484 Msa0776890:CDS
TCTATGAACAAAATATTGTT+GGG 0.458630 5_2:+55591633 None:intergenic
GACGCCTAAGCTTCGAGGAC+AGG 0.460104 5_2:-55594880 Msa0776890:CDS
AGAGGGAAGCTTTGTTCCAA+GGG 0.460175 5_2:-55594228 Msa0776890:CDS
CGCTTGATCGAAGCAAAGCC+AGG 0.463784 5_2:-55591537 Msa0776890:CDS
GAGAAATCTATCACATTTGT+GGG 0.464095 5_2:-55591275 Msa0776890:three_prime_UTR
TTAGCAAAGTTTATAATCAT+GGG 0.465775 5_2:+55591429 None:intergenic
CATGCCTGTCCTCGAAGCTT+AGG 0.475388 5_2:+55594876 None:intergenic
TCCCCTGAAAGCATCCTCTC+TGG 0.487029 5_2:+55597108 None:intergenic
ACCGGACCCTGGACGGAATG+AGG 0.501996 5_2:+55591674 None:intergenic
AAGCGCACTTCCTTAAAACC+TGG 0.502688 5_2:+55591555 None:intergenic
CAGCAGGCCTCATTCCGTCC+AGG 0.503368 5_2:-55591681 Msa0776890:CDS
CTAAAGACGCCTAAGCTTCG+AGG 0.510089 5_2:-55594885 Msa0776890:CDS
AAGAGGGAAGCTTTGTTCCA+AGG 0.510421 5_2:-55594229 Msa0776890:CDS
ATCCTGCCGGTAGTTTCATA+AGG 0.510992 5_2:+55591603 None:intergenic
CTTGGGCACCGGACCCTGGA+CGG 0.524347 5_2:+55591667 None:intergenic
GCTTATTCTCTCAATATGGA+AGG 0.527328 5_2:-55594926 Msa0776890:CDS
AAATCTACAAATGCGATACC+TGG 0.531054 5_2:+55591519 None:intergenic
TGATGTCTATTGATTGTATG+TGG 0.531571 5_2:-55591227 Msa0776890:three_prime_UTR
TCCAGGGTCCGGTGCCCAAG+AGG 0.546064 5_2:-55591664 Msa0776890:CDS
CATTGACCTAGACAATGCTA+TGG 0.547222 5_2:-55591125 Msa0776890:three_prime_UTR
CTCGACTCGACTATCGAGCT+AGG 0.555370 5_2:-55597167 Msa0776890:five_prime_UTR
AGCAGGCCTCATTCCGTCCA+GGG 0.559600 5_2:-55591680 Msa0776890:CDS
CAATCTTCTGTGCCTAATGG+TGG 0.560473 5_2:-55592210 Msa0776890:CDS
TGCCTTATGAAACTACCGGC+AGG 0.562261 5_2:-55591605 Msa0776890:CDS
ATGGCAATGCAGGCTCTACA+AGG 0.563519 5_2:-55591474 Msa0776890:CDS
TAAGCTTCGAGGACAGGCAT+GGG 0.574433 5_2:-55594874 Msa0776890:CDS
CTAAGCTTCGAGGACAGGCA+TGG 0.581122 5_2:-55594875 Msa0776890:CDS
GATTGTATTGCTAAAGAAGA+GGG 0.592319 5_2:-55594245 Msa0776890:CDS
GAGCATTTCGAGCATCCTGC+CGG 0.593424 5_2:+55591590 None:intergenic
TTGTAGAGCCTGCATTGCCA+TGG 0.596181 5_2:+55591476 None:intergenic
GGAAGTTAGATTAAAGTAGA+CGG 0.596942 5_2:-55591303 Msa0776890:three_prime_UTR
AGCGCACTTCCTTAAAACCT+GGG 0.597463 5_2:+55591556 None:intergenic
GTGCCTAATGGTGGAACACA+TGG 0.600600 5_2:-55592201 Msa0776890:CDS
ATGCTCTTCGAACAATACCC+AGG 0.603681 5_2:-55591573 Msa0776890:CDS
GGGAAGATTGAGATAGTGCT+TGG 0.619587 5_2:-55591255 Msa0776890:three_prime_UTR
AGATGAGGCACAATCATCCA+TGG 0.621792 5_2:-55591493 Msa0776890:CDS
AATTTGCCTTATGAAACTAC+CGG 0.623907 5_2:-55591609 Msa0776890:CDS
AATGAAAAGATCAAGAAAGA+CGG 0.624809 5_2:-55597048 Msa0776890:intron
GGAACACATGGTGCAAGTAA+TGG 0.626001 5_2:-55592189 Msa0776890:CDS
AGATTGTATTGCTAAAGAAG+AGG 0.631624 5_2:-55594246 Msa0776890:CDS
ACCAGAGAGGATGCTTTCAG+GGG 0.636302 5_2:-55597109 Msa0776890:exon
CCATCAGAACCAAACCAGAG+AGG 0.711349 5_2:-55597122 Msa0776890:five_prime_UTR
ACACATGGTGCAAGTAATGG+TGG 0.721642 5_2:-55592186 Msa0776890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTAAATATTTATACATA+TGG + chr5_2:55592442-55592461 None:intergenic 10.0%
!!! TGTATATACTTTATATTTTA+AGG - chr5_2:55595515-55595534 Msa0776890:intron 10.0%
!! TAGAAAAGTAAGAAAAAAAT+GGG + chr5_2:55591275-55591294 None:intergenic 15.0%
!!! TGTTTTTTGTTGAATTATTA+GGG - chr5_2:55591415-55591434 Msa0776890:exon 15.0%
!!! AAAATTTAGTTTAATTGAAC+TGG - chr5_2:55591516-55591535 Msa0776890:CDS 15.0%
!!! AAATTTAGTTTAATTGAACT+GGG - chr5_2:55591517-55591536 Msa0776890:CDS 15.0%
!! TAAAAAGTTAATGAAAATTG+TGG - chr5_2:55592039-55592058 Msa0776890:intron 15.0%
!! ATATAACAGATCATATATAT+AGG - chr5_2:55592252-55592271 Msa0776890:intron 15.0%
!! TATAACAGATCATATATATA+GGG - chr5_2:55592253-55592272 Msa0776890:intron 15.0%
!! ATGATATATCAAATAATTCT+TGG + chr5_2:55592467-55592486 None:intergenic 15.0%
!! AAATAATAATTCAAAAAGTG+AGG + chr5_2:55594139-55594158 None:intergenic 15.0%
!!! TCACTTTTTGAATTATTATT+TGG - chr5_2:55594138-55594157 Msa0776890:intron 15.0%
!!! CACTTTTTGAATTATTATTT+GGG - chr5_2:55594139-55594158 Msa0776890:intron 15.0%
!!! CTAATATTTTCTATCATTTT+TGG + chr5_2:55594288-55594307 None:intergenic 15.0%
!! CAAAAATGATAGAAAATATT+AGG - chr5_2:55594286-55594305 Msa0776890:intron 15.0%
!! AAATTAATGTTTAGTACAAA+AGG + chr5_2:55594760-55594779 None:intergenic 15.0%
!! TAATAATCAACATAGATTAA+AGG + chr5_2:55596125-55596144 None:intergenic 15.0%
!! TATTAAACGTTGTTAAATAA+CGG - chr5_2:55596201-55596220 Msa0776890:intron 15.0%
!! TTAATGTAAATGGTTTGATT+TGG + chr5_2:55591196-55591215 None:intergenic 20.0%
!! ATTGAGATTCTTAATGTAAA+TGG + chr5_2:55591206-55591225 None:intergenic 20.0%
!! GTAGAAAAGTAAGAAAAAAA+TGG + chr5_2:55591276-55591295 None:intergenic 20.0%
!!! TTGCTTTTTACTACTTTTTT+AGG - chr5_2:55591303-55591322 Msa0776890:three_prime_UTR 20.0%
!!! TTATGGTTAGAAATTTTAAC+TGG - chr5_2:55591387-55591406 Msa0776890:three_prime_UTR 20.0%
!!! TATGGTTAGAAATTTTAACT+GGG - chr5_2:55591388-55591407 Msa0776890:three_prime_UTR 20.0%
!!! GTGTTTTTTGTTGAATTATT+AGG - chr5_2:55591414-55591433 Msa0776890:exon 20.0%
!!! GCTTTTATGTATTATTCATA+AGG - chr5_2:55591605-55591624 Msa0776890:CDS 20.0%
!! TAATATAACCAACAATAGAT+TGG + chr5_2:55591865-55591884 None:intergenic 20.0%
!!! AATAAGAACCTTTAATTTGA+TGG - chr5_2:55592075-55592094 Msa0776890:intron 20.0%
!!! ATCATTGTATAACTTTTTAC+CGG + chr5_2:55592290-55592309 None:intergenic 20.0%
!! TGTATTACAAAATTCAATGT+TGG - chr5_2:55592393-55592412 Msa0776890:intron 20.0%
!! ATATATCATTGTCATATGTA+CGG - chr5_2:55592478-55592497 Msa0776890:intron 20.0%
!! TACAAGTCCAATATATATAT+GGG + chr5_2:55593143-55593162 None:intergenic 20.0%
!! ATACAAGTCCAATATATATA+TGG + chr5_2:55593144-55593163 None:intergenic 20.0%
!! ATATATATATTGGACTTGTA+TGG - chr5_2:55593143-55593162 Msa0776890:intron 20.0%
!!! ATATTATGTTTAGCTTTCTT+TGG - chr5_2:55593788-55593807 Msa0776890:intron 20.0%
!! ATTTAACAAAATTAGAGAAG+AGG + chr5_2:55594945-55594964 None:intergenic 20.0%
!!! TTCTCTAATTTTGTTAAATG+TGG - chr5_2:55594946-55594965 Msa0776890:CDS 20.0%
!!! AAATTCATTATTTTGCAATG+TGG - chr5_2:55595301-55595320 Msa0776890:intron 20.0%
!! ATAAATCATGTACACAAAAT+AGG + chr5_2:55595416-55595435 None:intergenic 20.0%
!! CATATTATAACAACATAGAT+TGG - chr5_2:55595688-55595707 Msa0776890:intron 20.0%
!! TCTATGAACAAAATATTGTT+GGG + chr5_2:55596641-55596660 None:intergenic 20.0%
!! TTAGCAAAGTTTATAATCAT+GGG + chr5_2:55596845-55596864 None:intergenic 20.0%
! AATGAAAAGATCAAGAAAGA+CGG - chr5_2:55591223-55591242 Msa0776890:three_prime_UTR 25.0%
! GAAAAAAATGGGAATGTAAA+CGG + chr5_2:55591264-55591283 None:intergenic 25.0%
!!! ACTACTTTTTTAGGTTTCAA+CGG - chr5_2:55591312-55591331 Msa0776890:three_prime_UTR 25.0%
!! TTGAATTATTAGGGTAGTTT+TGG - chr5_2:55591424-55591443 Msa0776890:CDS 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr5_2:55591566-55591585 None:intergenic 25.0%
! TATTATTCATAAGGTTGTCA+AGG - chr5_2:55591614-55591633 Msa0776890:CDS 25.0%
! TAAAAATAAGCCAATCCAAA+TGG - chr5_2:55591744-55591763 Msa0776890:intron 25.0%
! AAAAATAAGCCAATCCAAAT+GGG - chr5_2:55591745-55591764 Msa0776890:intron 25.0%
! GCTTATTATGTATGAGAAAA+GGG - chr5_2:55591767-55591786 Msa0776890:intron 25.0%
! CAATTCAACCATCAAATTAA+AGG + chr5_2:55592086-55592105 None:intergenic 25.0%
! TGGTTGAATTGATGAAATTA+AGG - chr5_2:55592095-55592114 Msa0776890:intron 25.0%
! GGTTGAATTGATGAAATTAA+GGG - chr5_2:55592096-55592115 Msa0776890:intron 25.0%
!! ATCATTGCATAACTTTTTAC+CGG + chr5_2:55592234-55592253 None:intergenic 25.0%
! ATATAACAGATCCTATATGT+AGG - chr5_2:55592308-55592327 Msa0776890:intron 25.0%
! TATAACAGATCCTATATGTA+GGG - chr5_2:55592309-55592328 Msa0776890:intron 25.0%
! AGTATATCAGTGTAATACAT+GGG - chr5_2:55592332-55592351 Msa0776890:intron 25.0%
!!! TCGTTGAATAACTTTTTTAC+TGG - chr5_2:55592365-55592384 Msa0776890:intron 25.0%
! TTACAAAATTCAATGTTGGA+TGG - chr5_2:55592397-55592416 Msa0776890:intron 25.0%
! TACAAAATTCAATGTTGGAT+GGG - chr5_2:55592398-55592417 Msa0776890:intron 25.0%
! TATATCATTGTCATATGTAC+GGG - chr5_2:55592479-55592498 Msa0776890:intron 25.0%
!! TTTCTACCATCTTTTCTAAT+AGG + chr5_2:55592649-55592668 None:intergenic 25.0%
!! GTTTCTCTAATAGTTTTTGT+AGG + chr5_2:55592772-55592791 None:intergenic 25.0%
! TATTAGAGAAACTATCAAGA+AGG - chr5_2:55592780-55592799 Msa0776890:intron 25.0%
! TATTAGAGAAACTATCAAGA+AGG - chr5_2:55592780-55592799 Msa0776890:intron 25.0%
! ACAAGTCCAATATATATATG+GGG + chr5_2:55593142-55593161 None:intergenic 25.0%
!! TTGCTCTTGATTTTTCATTT+CGG - chr5_2:55593169-55593188 Msa0776890:intron 25.0%
! TATTGCTTATTCTCTCAATA+TGG - chr5_2:55593341-55593360 Msa0776890:intron 25.0%
!! CCATAGGTTTTTCATAAAAT+GGG + chr5_2:55593478-55593497 None:intergenic 25.0%
!! ACCATAGGTTTTTCATAAAA+TGG + chr5_2:55593479-55593498 None:intergenic 25.0%
! CAGTATAACTTTAATACCAT+AGG + chr5_2:55593494-55593513 None:intergenic 25.0%
! GTACACAAATTAACAGATAT+AGG + chr5_2:55593517-55593536 None:intergenic 25.0%
! TAATTTCTCTTAATGTCCAT+TGG - chr5_2:55593619-55593638 Msa0776890:intron 25.0%
! GAATTCTTGGTTAAACATTA+TGG - chr5_2:55593688-55593707 Msa0776890:intron 25.0%
! TTCAAAGGGATAAATGATAA+TGG + chr5_2:55594184-55594203 None:intergenic 25.0%
! TTCTAATGAATGACTAGTAT+TGG + chr5_2:55594265-55594284 None:intergenic 25.0%
! ATTGAGAGTAATATAAGAAG+AGG - chr5_2:55594463-55594482 Msa0776890:intron 25.0%
! TTGAGAGTAATATAAGAAGA+GGG - chr5_2:55594464-55594483 Msa0776890:intron 25.0%
! NNNNNNNNGTCAACATGTCA+TGG - chr5_2:55595268-55595287 Msa0776890:intron 25.0%
! ATAATCCCTAATTTGAATGA+GGG + chr5_2:55595813-55595832 None:intergenic 25.0%
!! CGTTAGTTTCTTTATTGAAT+TGG - chr5_2:55595959-55595978 Msa0776890:intron 25.0%
! TACGTAATATTGTGAAATAG+CGG - chr5_2:55596298-55596317 Msa0776890:intron 25.0%
! CAATTCACAACACTAAAATT+GGG - chr5_2:55596386-55596405 Msa0776890:intron 25.0%
! ATATGTTTCAATTTAACTCG+TGG - chr5_2:55596484-55596503 Msa0776890:intron 25.0%
! CTCTATGAACAAAATATTGT+TGG + chr5_2:55596642-55596661 None:intergenic 25.0%
!!! ATTTGTAGATTTTGAAGATG+AGG - chr5_2:55596763-55596782 Msa0776890:intron 25.0%
!! TTATAATCATGGGATTTTGA+GGG + chr5_2:55596835-55596854 None:intergenic 25.0%
!! TTTATAATCATGGGATTTTG+AGG + chr5_2:55596836-55596855 None:intergenic 25.0%
! CTTAGCAAAGTTTATAATCA+TGG + chr5_2:55596846-55596865 None:intergenic 25.0%
!! GCAAAATTTGCTTTGAATAT+TGG + chr5_2:55596893-55596912 None:intergenic 25.0%
!! ATGTAAATGGTTTGATTTGG+AGG + chr5_2:55591193-55591212 None:intergenic 30.0%
TCATACATAATAAGCCCATT+TGG + chr5_2:55591762-55591781 None:intergenic 30.0%
GGCTTATTATGTATGAGAAA+AGG - chr5_2:55591766-55591785 Msa0776890:intron 30.0%
TTGAATTGCCAATCTATTGT+TGG - chr5_2:55591854-55591873 Msa0776890:intron 30.0%
!! TTATTTTATGAAGTCTCGCA+TGG - chr5_2:55592013-55592032 Msa0776890:intron 30.0%
!! ATATAGGGAGTATCTATATC+CGG - chr5_2:55592268-55592287 Msa0776890:intron 30.0%
GAGTATATCAGTGTAATACA+TGG - chr5_2:55592331-55592350 Msa0776890:intron 30.0%
GAAATGACAACATTAGAGAA+AGG - chr5_2:55592613-55592632 Msa0776890:intron 30.0%
TTAATCTTGACGTATGATAG+AGG - chr5_2:55593109-55593128 Msa0776890:intron 30.0%
! TGCTCTTGATTTTTCATTTC+GGG - chr5_2:55593170-55593189 Msa0776890:intron 30.0%
!!! GTAATTGGATTTTGTTTTGC+TGG - chr5_2:55593201-55593220 Msa0776890:intron 30.0%
! CCCATTTTATGAAAAACCTA+TGG - chr5_2:55593475-55593494 Msa0776890:intron 30.0%
AAAACGTGATAAAACACAAC+AGG + chr5_2:55593552-55593571 None:intergenic 30.0%
TAACCAAGAATTCTTACAAG+CGG + chr5_2:55593681-55593700 None:intergenic 30.0%
!! TTTGAAATCTTTTGTCCTGT+TGG - chr5_2:55593811-55593830 Msa0776890:intron 30.0%
AAGAATGAGAATGAAAGATG+TGG - chr5_2:55593850-55593869 Msa0776890:intron 30.0%
!! CTTGTTTTCGTATGAAGTTA+CGG - chr5_2:55593904-55593923 Msa0776890:intron 30.0%
! TTGTTTTCGTATGAAGTTAC+GGG - chr5_2:55593905-55593924 Msa0776890:intron 30.0%
! TTTCAGAAGCATATCATTGA+TGG + chr5_2:55593953-55593972 None:intergenic 30.0%
AGATTGTATTGCTAAAGAAG+AGG - chr5_2:55594025-55594044 Msa0776890:intron 30.0%
GATTGTATTGCTAAAGAAGA+GGG - chr5_2:55594026-55594045 Msa0776890:intron 30.0%
AAAAAGAAACAAGAGGAGAA+AGG - chr5_2:55594071-55594090 Msa0776890:intron 30.0%
TCAAAAAGTGAGGATGATTA+TGG + chr5_2:55594129-55594148 None:intergenic 30.0%
! TATCATTTATCCCTTTGAAG+TGG - chr5_2:55594185-55594204 Msa0776890:intron 30.0%
AACTTGCAAACAAAGACTAA+AGG + chr5_2:55594326-55594345 None:intergenic 30.0%
! TTAGTCTTTGTTTGCAAGTT+AGG - chr5_2:55594326-55594345 Msa0776890:intron 30.0%
TTTGCAAGTTAGGAGATAAA+GGG - chr5_2:55594336-55594355 Msa0776890:intron 30.0%
AGTAATATAAGAAGAGGGAA+AGG - chr5_2:55594469-55594488 Msa0776890:intron 30.0%
TCTCTACTCAACAAATTATG+AGG + chr5_2:55594900-55594919 None:intergenic 30.0%
! CAAAATTAGAGAAGAGGTAT+AGG + chr5_2:55594939-55594958 None:intergenic 30.0%
! TTTTGAGCTAACCTATCATT+AGG - chr5_2:55594980-55594999 Msa0776890:intron 30.0%
!! TTGGTTCTGATTGGTTTATT+TGG - chr5_2:55595105-55595124 Msa0776890:intron 30.0%
TGGGTTAACTTAATAAGGTT+GGG + chr5_2:55595150-55595169 None:intergenic 30.0%
!! ACTAGTGGGTTAACTTAATA+AGG + chr5_2:55595155-55595174 None:intergenic 30.0%
TAAACTCCCTCATTCAAATT+AGG - chr5_2:55595804-55595823 Msa0776890:intron 30.0%
AAACTCCCTCATTCAAATTA+GGG - chr5_2:55595805-55595824 Msa0776890:intron 30.0%
GATAATCCCTAATTTGAATG+AGG + chr5_2:55595814-55595833 None:intergenic 30.0%
ATATTGTGAAATAGCGGTTA+TGG - chr5_2:55596304-55596323 Msa0776890:intron 30.0%
! AATAGCAGTTTGTTCAAACT+CGG + chr5_2:55596354-55596373 None:intergenic 30.0%
GCAATTCACAACACTAAAAT+TGG - chr5_2:55596385-55596404 Msa0776890:intron 30.0%
AAATGTACTCTTATATCAGC+AGG - chr5_2:55596574-55596593 Msa0776890:intron 30.0%
AATTTGCCTTATGAAACTAC+CGG - chr5_2:55596662-55596681 Msa0776890:intron 30.0%
! TATAATCATGGGATTTTGAG+GGG + chr5_2:55596834-55596853 None:intergenic 30.0%
GGAAGTTAGATTAAAGTAGA+CGG - chr5_2:55596968-55596987 Msa0776890:intron 30.0%
TGAGAAATCTATCACATTTG+TGG - chr5_2:55596995-55597014 Msa0776890:intron 30.0%
GAGAAATCTATCACATTTGT+GGG - chr5_2:55596996-55597015 Msa0776890:intron 30.0%
! TGATGTCTATTGATTGTATG+TGG - chr5_2:55597044-55597063 Msa0776890:intron 30.0%
! TCTCAGTTACTTTGTAAACT+AGG - chr5_2:55597097-55597116 Msa0776890:CDS 30.0%
TAAAAACCATAGCATTGTCT+AGG + chr5_2:55597155-55597174 None:intergenic 30.0%
!!! TTTTAGGTTTCAACGGTTCT+TGG - chr5_2:55591319-55591338 Msa0776890:three_prime_UTR 35.0%
ATTACGTTGCTTGAGAGTTA+TGG - chr5_2:55591370-55591389 Msa0776890:three_prime_UTR 35.0%
!!! GGTAGTTTTGGATTTGTGTT+AGG - chr5_2:55591436-55591455 Msa0776890:CDS 35.0%
GCATTTCTTAGTTGGACAAT+GGG - chr5_2:55591539-55591558 Msa0776890:CDS 35.0%
CATAATAAGCCCATTTGGAT+TGG + chr5_2:55591757-55591776 None:intergenic 35.0%
!! AACTGTGAGTTTTGTGATAC+AGG - chr5_2:55592198-55592217 Msa0776890:CDS 35.0%
! CATAACTTTTTACCGGATAC+AGG + chr5_2:55592227-55592246 None:intergenic 35.0%
CTGATATACTCCCTACATAT+AGG + chr5_2:55592322-55592341 None:intergenic 35.0%
GTAGCACCTATTAGAAAAGA+TGG - chr5_2:55592640-55592659 Msa0776890:intron 35.0%
AGATGGTAGAAACTAGACTT+AGG - chr5_2:55592657-55592676 Msa0776890:intron 35.0%
AAACTAGACTTAGGTGGTTT+GGG - chr5_2:55592666-55592685 Msa0776890:intron 35.0%
TAGTTAGGAGAGTAGATTAG+TGG - chr5_2:55592717-55592736 Msa0776890:intron 35.0%
AGTTAGGAGAGTAGATTAGT+GGG - chr5_2:55592718-55592737 Msa0776890:intron 35.0%
AGTCAAATCACTAGAGGTAA+GGG - chr5_2:55592742-55592761 Msa0776890:intron 35.0%
GGATCTAGATATCTATGAGT+TGG - chr5_2:55592801-55592820 Msa0776890:intron 35.0%
! TTGGAGAAAGACATGGTTTT+CGG - chr5_2:55592820-55592839 Msa0776890:intron 35.0%
GGATCTAGATATCTATGAGT+TGG - chr5_2:55592801-55592820 Msa0776890:intron 35.0%
! TTGGAGAAAGACATGGTTTT+CGG - chr5_2:55592820-55592839 Msa0776890:intron 35.0%
! TGGTTTTCGGTAGAACAATA+TGG - chr5_2:55592963-55592982 Msa0776890:intron 35.0%
! GCTCTTGATTTTTCATTTCG+GGG - chr5_2:55593171-55593190 Msa0776890:intron 35.0%
! CTCTTGATTTTTCATTTCGG+GGG - chr5_2:55593172-55593191 Msa0776890:intron 35.0%
! TCTTGATTTTTCATTTCGGG+GGG - chr5_2:55593173-55593192 Msa0776890:intron 35.0%
!!! GATTTTGTTTTGCTGGTCTT+GGG - chr5_2:55593208-55593227 Msa0776890:intron 35.0%
!!! ATTTTGTTTTGCTGGTCTTG+GGG - chr5_2:55593209-55593228 Msa0776890:intron 35.0%
!! TGTTCTATTTGTTGTCGTTG+TGG - chr5_2:55593298-55593317 Msa0776890:intron 35.0%
GCTTATTCTCTCAATATGGA+AGG - chr5_2:55593345-55593364 Msa0776890:intron 35.0%
! CTCTCAATATGGAAGGATTT+TGG - chr5_2:55593352-55593371 Msa0776890:intron 35.0%
ACAGAATTCATGATGTCCAA+TGG + chr5_2:55593638-55593657 None:intergenic 35.0%
TCTTACAAGCGGCTATATTT+GGG + chr5_2:55593670-55593689 None:intergenic 35.0%
TTCTTACAAGCGGCTATATT+TGG + chr5_2:55593671-55593690 None:intergenic 35.0%
ATATTGAACATACTGCCAAC+AGG + chr5_2:55593829-55593848 None:intergenic 35.0%
! TGTTTTCGTATGAAGTTACG+GGG - chr5_2:55593906-55593925 Msa0776890:intron 35.0%
! TGTTTCTTTTTCTTCTCCCT+TGG + chr5_2:55594062-55594081 None:intergenic 35.0%
GGAGAAGAAAAAGAAACAAG+AGG - chr5_2:55594064-55594083 Msa0776890:intron 35.0%
GAGGATGATTATGGTTTGAA+AGG + chr5_2:55594120-55594139 None:intergenic 35.0%
ACAGACATTACCACTTCAAA+GGG + chr5_2:55594198-55594217 None:intergenic 35.0%
AACAGACATTACCACTTCAA+AGG + chr5_2:55594199-55594218 None:intergenic 35.0%
GTTTGCAAGTTAGGAGATAA+AGG - chr5_2:55594335-55594354 Msa0776890:intron 35.0%
TCTAAAAACACACCCAAACA+AGG + chr5_2:55594401-55594420 None:intergenic 35.0%
!!! TTGTTTGGGTGTGTTTTTAG+AGG - chr5_2:55594400-55594419 Msa0776890:intron 35.0%
ATAAGAAGAGGGAAAGGATA+TGG - chr5_2:55594475-55594494 Msa0776890:intron 35.0%
! GAGAAGACTTGGAAATGTTT+TGG + chr5_2:55594518-55594537 None:intergenic 35.0%
ACATGAATTGAGAGAAGACT+TGG + chr5_2:55594529-55594548 None:intergenic 35.0%
CTAACTCCCAAAAAAACCTT+CGG - chr5_2:55594592-55594611 Msa0776890:intron 35.0%
!!! ATGCATCCGAAGGTTTTTTT+GGG + chr5_2:55594601-55594620 None:intergenic 35.0%
!!! AATGCATCCGAAGGTTTTTT+TGG + chr5_2:55594602-55594621 None:intergenic 35.0%
ATTGTGCCTCATATATTGCT+TGG - chr5_2:55594687-55594706 Msa0776890:intron 35.0%
TAACCACCAAGCAATATATG+AGG + chr5_2:55594696-55594715 None:intergenic 35.0%
! ATAGGTTAGCTCAAAAAGCT+TGG + chr5_2:55594976-55594995 None:intergenic 35.0%
! ACTGAGCAGAATTAGTTCTT+TGG + chr5_2:55595033-55595052 None:intergenic 35.0%
CAACTGATATGCAACTAACA+TGG - chr5_2:55595054-55595073 Msa0776890:intron 35.0%
GTTCAACTGAACCATATTTC+TGG - chr5_2:55595081-55595100 Msa0776890:intron 35.0%
!! ACTGAACCATATTTCTGGTT+TGG - chr5_2:55595086-55595105 Msa0776890:intron 35.0%
TCAGAACCAAACCAGAAATA+TGG + chr5_2:55595095-55595114 None:intergenic 35.0%
!! ATTTCTGGTTTGGTTCTGAT+TGG - chr5_2:55595096-55595115 Msa0776890:intron 35.0%
! GTGGGTTAACTTAATAAGGT+TGG + chr5_2:55595151-55595170 None:intergenic 35.0%
!!! AACATGGGGTGGATTTTTTT+AGG + chr5_2:55595363-55595382 None:intergenic 35.0%
!! CCTAGTTTTCCATATTGTGT+GGG + chr5_2:55595390-55595409 None:intergenic 35.0%
ACAGCTTAACAGTTTATGTC+TGG + chr5_2:55595498-55595517 None:intergenic 35.0%
! AATGTATTGGAGGAAGCTTT+TGG + chr5_2:55595738-55595757 None:intergenic 35.0%
GAACTCAAGAAATGTATTGG+AGG + chr5_2:55595748-55595767 None:intergenic 35.0%
TACAAAATCCCCCATATTTG+GGG + chr5_2:55595771-55595790 None:intergenic 35.0%
CTACAAAATCCCCCATATTT+GGG + chr5_2:55595772-55595791 None:intergenic 35.0%
ACTACAAAATCCCCCATATT+TGG + chr5_2:55595773-55595792 None:intergenic 35.0%
AAGGAAGAAGGAAAGAGAAA+TGG + chr5_2:55595844-55595863 None:intergenic 35.0%
TTTGTTTGGGAGTTAAAGAG+GGG + chr5_2:55595886-55595905 None:intergenic 35.0%
GTTTGTTTGGGAGTTAAAGA+GGG + chr5_2:55595887-55595906 None:intergenic 35.0%
! GCATACTTAAGGGTTTGTTT+GGG + chr5_2:55595899-55595918 None:intergenic 35.0%
CAAGATCAGAAAGTGATGAT+GGG + chr5_2:55595924-55595943 None:intergenic 35.0%
ACAAGATCAGAAAGTGATGA+TGG + chr5_2:55595925-55595944 None:intergenic 35.0%
AAACAATCTTCTGTGCCTAA+TGG - chr5_2:55596058-55596077 Msa0776890:intron 35.0%
! TTTTTGCTGGAGAGAAAATC+AGG + chr5_2:55596150-55596169 None:intergenic 35.0%
GTAAACTCTATGCAATCTAG+AGG + chr5_2:55596178-55596197 None:intergenic 35.0%
ACGTACTAAATAGCGTATCA+GGG + chr5_2:55596283-55596302 None:intergenic 35.0%
TACGTACTAAATAGCGTATC+AGG + chr5_2:55596284-55596303 None:intergenic 35.0%
CAACACTAAAATTGGGTCAT+CGG - chr5_2:55596393-55596412 Msa0776890:intron 35.0%
AACACTAAAATTGGGTCATC+GGG - chr5_2:55596394-55596413 Msa0776890:intron 35.0%
AAATCTACAAATGCGATACC+TGG + chr5_2:55596755-55596774 None:intergenic 35.0%
! GCAAATTTTGCGTACTGTAT+TGG - chr5_2:55596902-55596921 Msa0776890:intron 35.0%
TGCAGAAGTTGTAAGTTTAC+AGG - chr5_2:55596947-55596966 Msa0776890:intron 35.0%
TGAACTGGGCATTTCTTAGT+TGG - chr5_2:55591531-55591550 Msa0776890:CDS 40.0%
GGCATTTCTTAGTTGGACAA+TGG - chr5_2:55591538-55591557 Msa0776890:CDS 40.0%
TCGAAGAGTAACTTTGAGCA+GGG + chr5_2:55592149-55592168 None:intergenic 40.0%
TGATACAGGTATCCTGTATC+CGG - chr5_2:55592212-55592231 Msa0776890:CDS 40.0%
TTGTCATATGTACGGGACAA+AGG - chr5_2:55592486-55592505 Msa0776890:intron 40.0%
TGTCATATGTACGGGACAAA+GGG - chr5_2:55592487-55592506 Msa0776890:intron 40.0%
AATTAAGCGTAGCAGAGATG+AGG - chr5_2:55592539-55592558 Msa0776890:intron 40.0%
AGGATGTTGCATACTTGCAT+TGG - chr5_2:55592559-55592578 Msa0776890:intron 40.0%
TGGTAGAAACTAGACTTAGG+TGG - chr5_2:55592660-55592679 Msa0776890:intron 40.0%
GAAACTAGACTTAGGTGGTT+TGG - chr5_2:55592665-55592684 Msa0776890:intron 40.0%
GTTAGGAGAGTAGATTAGTG+GGG - chr5_2:55592719-55592738 Msa0776890:intron 40.0%
GAGTCAAATCACTAGAGGTA+AGG - chr5_2:55592741-55592760 Msa0776890:intron 40.0%
! CTATGAGTTGGAGAAAGACA+TGG - chr5_2:55592813-55592832 Msa0776890:intron 40.0%
! TGGTTTTCGGTAGAACACTA+TGG - chr5_2:55592833-55592852 Msa0776890:intron 40.0%
! CTATGAGTTGGAGAAAGACA+TGG - chr5_2:55592813-55592832 Msa0776890:intron 40.0%
TTGACGTATGATAGAGGACT+CGG - chr5_2:55593115-55593134 Msa0776890:intron 40.0%
CTCGGTCCCCATATATATAT+TGG - chr5_2:55593133-55593152 Msa0776890:intron 40.0%
TTTCGGGGGGATATTGTAAT+TGG - chr5_2:55593186-55593205 Msa0776890:intron 40.0%
!!! GGATTTTGTTTTGCTGGTCT+TGG - chr5_2:55593207-55593226 Msa0776890:intron 40.0%
!!! TTTTGTTTTGCTGGTCTTGG+GGG - chr5_2:55593210-55593229 Msa0776890:intron 40.0%
CACTGTAAGATAACTTGAGC+AGG + chr5_2:55593582-55593601 None:intergenic 40.0%
TAGCCGCTTGTAAGAATTCT+TGG - chr5_2:55593675-55593694 Msa0776890:intron 40.0%
AAGAGGAGAAAGGTGAAGAA+TGG - chr5_2:55594081-55594100 Msa0776890:intron 40.0%
!!! AGGTTTTTTTGGGAGTTAGG+TGG + chr5_2:55594591-55594610 None:intergenic 40.0%
!!! CGAAGGTTTTTTTGGGAGTT+AGG + chr5_2:55594594-55594613 None:intergenic 40.0%
TGTGAGTATGTGAGAAAGAG+AGG - chr5_2:55594853-55594872 Msa0776890:CDS 40.0%
GTGAGTATGTGAGAAAGAGA+GGG - chr5_2:55594854-55594873 Msa0776890:CDS 40.0%
TGAGTATGTGAGAAAGAGAG+GGG - chr5_2:55594855-55594874 Msa0776890:CDS 40.0%
ACCTATCATTAGGTCTGTTC+TGG - chr5_2:55594990-55595009 Msa0776890:intron 40.0%
ACCAGAACAGACCTAATGAT+AGG + chr5_2:55594994-55595013 None:intergenic 40.0%
!!! ATTTTTTTAGGTGGGGGATG+AGG + chr5_2:55595351-55595370 None:intergenic 40.0%
!!! TGGGGTGGATTTTTTTAGGT+GGG + chr5_2:55595359-55595378 None:intergenic 40.0%
!!! ATGGGGTGGATTTTTTTAGG+TGG + chr5_2:55595360-55595379 None:intergenic 40.0%
! GTTTTCCATATTGTGTGGGA+GGG + chr5_2:55595386-55595405 None:intergenic 40.0%
! AGTTTTCCATATTGTGTGGG+AGG + chr5_2:55595387-55595406 None:intergenic 40.0%
CCCACACAATATGGAAAACT+AGG - chr5_2:55595387-55595406 Msa0776890:intron 40.0%
!! GCCTAGTTTTCCATATTGTG+TGG + chr5_2:55595391-55595410 None:intergenic 40.0%
! TATTGGAGGAAGCTTTTGGA+GGG + chr5_2:55595734-55595753 None:intergenic 40.0%
GGGGAACTCAAGAAATGTAT+TGG + chr5_2:55595751-55595770 None:intergenic 40.0%
TTCTTGAGTTCCCCCAAATA+TGG - chr5_2:55595757-55595776 Msa0776890:intron 40.0%
TCTTGAGTTCCCCCAAATAT+GGG - chr5_2:55595758-55595777 Msa0776890:intron 40.0%
ACAAAATCCCCCATATTTGG+GGG + chr5_2:55595770-55595789 None:intergenic 40.0%
! TGGGGGATTTTGTAGTATGA+AGG - chr5_2:55595777-55595796 Msa0776890:intron 40.0%
TGCTTAGGGTAAAAGGAAGA+AGG + chr5_2:55595856-55595875 None:intergenic 40.0%
! GGTTTGTTTGGGAGTTAAAG+AGG + chr5_2:55595888-55595907 None:intergenic 40.0%
! GGCATACTTAAGGGTTTGTT+TGG + chr5_2:55595900-55595919 None:intergenic 40.0%
! ATGATGGGAGGCATACTTAA+GGG + chr5_2:55595909-55595928 None:intergenic 40.0%
! TCTAGAGGCAAAGTTTTTGC+TGG + chr5_2:55596163-55596182 None:intergenic 40.0%
TTGTGAAATAGCGGTTATGG+AGG - chr5_2:55596307-55596326 Msa0776890:intron 40.0%
GTGTTGTGAATTGCAGATTG+TGG + chr5_2:55596379-55596398 None:intergenic 40.0%
CGAGACTAGTGATACAAACA+TGG + chr5_2:55596421-55596440 None:intergenic 40.0%
! CGAACAATACCCAGGTTTTA+AGG - chr5_2:55596706-55596725 Msa0776890:intron 40.0%
CATTGACCTAGACAATGCTA+TGG - chr5_2:55597146-55597165 Msa0776890:five_prime_UTR 40.0%
!! TGAAAGCATCCTCTCTGGTT+TGG + chr5_2:55591161-55591180 None:intergenic 45.0%
AAACCAGAGAGGATGCTTTC+AGG - chr5_2:55591160-55591179 Msa0776890:three_prime_UTR 45.0%
AACCAGAGAGGATGCTTTCA+GGG - chr5_2:55591161-55591180 Msa0776890:three_prime_UTR 45.0%
CTCGAAGAGTAACTTTGAGC+AGG + chr5_2:55592150-55592169 None:intergenic 45.0%
ATATGTACGGGACAAAGGGT+TGG - chr5_2:55592491-55592510 Msa0776890:intron 45.0%
GCATACTTGCATTGGATGTG+TGG - chr5_2:55592567-55592586 Msa0776890:intron 45.0%
GATGTGTGGTAAGACTAGAC+TGG - chr5_2:55592581-55592600 Msa0776890:intron 45.0%
GACAACATTAGAGAAAGGCG+AGG - chr5_2:55592618-55592637 Msa0776890:intron 45.0%
! TAAGCCTTATCCCACCAAGT+GGG + chr5_2:55592883-55592902 None:intergenic 45.0%
!! AAGAGGGAAGCTTTGTTCCA+AGG - chr5_2:55594042-55594061 Msa0776890:intron 45.0%
!! AGAGGGAAGCTTTGTTCCAA+GGG - chr5_2:55594043-55594062 Msa0776890:intron 45.0%
GCAAGTTAGGAGATAAAGGG+AGG - chr5_2:55594339-55594358 Msa0776890:intron 45.0%
TAAAGGGAGGTGAGAGCTTT+AGG - chr5_2:55594352-55594371 Msa0776890:intron 45.0%
AAAGGGAGGTGAGAGCTTTA+GGG - chr5_2:55594353-55594372 Msa0776890:intron 45.0%
! TTCATGTTCGAGTTCCTCCA+TGG - chr5_2:55594542-55594561 Msa0776890:intron 45.0%
! TCATGTTCGAGTTCCTCCAT+GGG - chr5_2:55594543-55594562 Msa0776890:intron 45.0%
GAAAGGAAGATAGTTCCCCA+TGG + chr5_2:55594562-55594581 None:intergenic 45.0%
! TGTGTCTGAAATGCATCCGA+AGG + chr5_2:55594611-55594630 None:intergenic 45.0%
GTGCCTCATATATTGCTTGG+TGG - chr5_2:55594690-55594709 Msa0776890:intron 45.0%
TATGTGAGAAAGAGAGGGGA+GGG - chr5_2:55594859-55594878 Msa0776890:CDS 45.0%
!!! GGGTGGATTTTTTTAGGTGG+GGG + chr5_2:55595357-55595376 None:intergenic 45.0%
!!! GGGGTGGATTTTTTTAGGTG+GGG + chr5_2:55595358-55595377 None:intergenic 45.0%
TATTGTGTGGGAGGGAACAT+GGG + chr5_2:55595378-55595397 None:intergenic 45.0%
ATATTGTGTGGGAGGGAACA+TGG + chr5_2:55595379-55595398 None:intergenic 45.0%
ATGTTCCCTCCCACACAATA+TGG - chr5_2:55595378-55595397 Msa0776890:intron 45.0%
CTCTAGTTGCGAGTTTGTAG+TGG - chr5_2:55595546-55595565 Msa0776890:intron 45.0%
TAGTTGCGAGTTTGTAGTGG+AGG - chr5_2:55595549-55595568 Msa0776890:intron 45.0%
! AGTTGCGAGTTTGTAGTGGA+GGG - chr5_2:55595550-55595569 Msa0776890:intron 45.0%
! AGTTTGTAGTGGAGGGCTTT+GGG - chr5_2:55595557-55595576 Msa0776890:intron 45.0%
! GTATTGGAGGAAGCTTTTGG+AGG + chr5_2:55595735-55595754 None:intergenic 45.0%
CTTGAGTTCCCCCAAATATG+GGG - chr5_2:55595759-55595778 Msa0776890:intron 45.0%
TTGAGTTCCCCCAAATATGG+GGG - chr5_2:55595760-55595779 Msa0776890:intron 45.0%
!! AGGAGAGTGCTTAGGGTAAA+AGG + chr5_2:55595863-55595882 None:intergenic 45.0%
!! GATGATGGGAGGCATACTTA+AGG + chr5_2:55595910-55595929 None:intergenic 45.0%
!! GATCAGAAAGTGATGATGGG+AGG + chr5_2:55595921-55595940 None:intergenic 45.0%
TCTGCACAGCTGAGAAAAAG+AGG - chr5_2:55596020-55596039 Msa0776890:intron 45.0%
CAATCTTCTGTGCCTAATGG+TGG - chr5_2:55596061-55596080 Msa0776890:intron 45.0%
TAACGGCTACAGTAGTGCTA+TGG - chr5_2:55596218-55596237 Msa0776890:intron 45.0%
CAAACTCGGCTACACAACAA+TGG + chr5_2:55596340-55596359 None:intergenic 45.0%
ATCCTGCCGGTAGTTTCATA+AGG + chr5_2:55596671-55596690 None:intergenic 45.0%
ATGCTCTTCGAACAATACCC+AGG - chr5_2:55596698-55596717 Msa0776890:intron 45.0%
AGCGCACTTCCTTAAAACCT+GGG + chr5_2:55596718-55596737 None:intergenic 45.0%
AAGCGCACTTCCTTAAAACC+TGG + chr5_2:55596719-55596738 None:intergenic 45.0%
AGATGAGGCACAATCATCCA+TGG - chr5_2:55596778-55596797 Msa0776890:intron 45.0%
ACAATCATCCATGGCAATGC+AGG - chr5_2:55596787-55596806 Msa0776890:intron 45.0%
GGGAAGATTGAGATAGTGCT+TGG - chr5_2:55597016-55597035 Msa0776890:intron 45.0%
! TCGACTCGACTATCGAGCTA+GGG - chr5_2:55591105-55591124 Msa0776890:three_prime_UTR 50.0%
!! CCTCTCTGGTTTGGTTCTGA+TGG + chr5_2:55591152-55591171 None:intergenic 50.0%
CCATCAGAACCAAACCAGAG+AGG - chr5_2:55591149-55591168 Msa0776890:three_prime_UTR 50.0%
ACCAGAGAGGATGCTTTCAG+GGG - chr5_2:55591162-55591181 Msa0776890:three_prime_UTR 50.0%
AGTTGGACAATGGGTCCGTT+TGG - chr5_2:55591548-55591567 Msa0776890:CDS 50.0%
GGCATGTAGAGAGAAGACCT+GGG - chr5_2:55592687-55592706 Msa0776890:intron 50.0%
GCATGTAGAGAGAAGACCTG+GGG - chr5_2:55592688-55592707 Msa0776890:intron 50.0%
GTGGGGAGTCAAATCACTAG+AGG - chr5_2:55592736-55592755 Msa0776890:intron 50.0%
! AAGCCTTATCCCACCAAGTG+GGG + chr5_2:55592882-55592901 None:intergenic 50.0%
! GTAAGCCTTATCCCACCAAG+TGG + chr5_2:55592884-55592903 None:intergenic 50.0%
! AAGCCTTATCCCACCAAGTG+GGG + chr5_2:55592882-55592901 None:intergenic 50.0%
! CAAGCCTTATCCCACCAAGT+GGG + chr5_2:55593013-55593032 None:intergenic 50.0%
CTAAAGACGCCTAAGCTTCG+AGG - chr5_2:55593386-55593405 Msa0776890:intron 50.0%
TAAGCTTCGAGGACAGGCAT+GGG - chr5_2:55593397-55593416 Msa0776890:intron 50.0%
CATCTGTCGCACTGCATTAC+TGG + chr5_2:55593447-55593466 None:intergenic 50.0%
!! AGAGCTTTAGGGAGAGACGA+GGG - chr5_2:55594364-55594383 Msa0776890:intron 50.0%
!! GGGAATACCTCGCCTTGTTT+GGG - chr5_2:55594386-55594405 Msa0776890:intron 50.0%
AAACACACCCAAACAAGGCG+AGG + chr5_2:55594396-55594415 None:intergenic 50.0%
TTAGAGGTGAGCAGTCGAGA+AGG - chr5_2:55594416-55594435 Msa0776890:intron 50.0%
! CATGTTCGAGTTCCTCCATG+GGG - chr5_2:55594544-55594563 Msa0776890:intron 50.0%
AGGAAGATAGTTCCCCATGG+AGG + chr5_2:55594559-55594578 None:intergenic 50.0%
GAGTTAGGTGGAGACAGGAA+AGG + chr5_2:55594579-55594598 None:intergenic 50.0%
TTTGGGAGTTAGGTGGAGAC+AGG + chr5_2:55594584-55594603 None:intergenic 50.0%
GTATGTGAGAAAGAGAGGGG+AGG - chr5_2:55594858-55594877 Msa0776890:CDS 50.0%
ATTGTGTGGGAGGGAACATG+GGG + chr5_2:55595377-55595396 None:intergenic 50.0%
! GAGTTTGTAGTGGAGGGCTT+TGG - chr5_2:55595556-55595575 Msa0776890:intron 50.0%
! GTTTGTAGTGGAGGGCTTTG+GGG - chr5_2:55595558-55595577 Msa0776890:intron 50.0%
! TTTGTAGTGGAGGGCTTTGG+GGG - chr5_2:55595559-55595578 Msa0776890:intron 50.0%
GTTTGGGAGTTAAAGAGGGG+AGG + chr5_2:55595883-55595902 None:intergenic 50.0%
! GTGCCTAATGGTGGAACACA+TGG - chr5_2:55596070-55596089 Msa0776890:intron 50.0%
GCACCATGTGTTCCACCATT+AGG + chr5_2:55596076-55596095 None:intergenic 50.0%
GCTATGGCGCTATTGCATAG+CGG - chr5_2:55596234-55596253 Msa0776890:intron 50.0%
TGCCTTATGAAACTACCGGC+AGG - chr5_2:55596666-55596685 Msa0776890:intron 50.0%
TTGTAGAGCCTGCATTGCCA+TGG + chr5_2:55596798-55596817 None:intergenic 50.0%
ATGGCAATGCAGGCTCTACA+AGG - chr5_2:55596797-55596816 Msa0776890:intron 50.0%
! CTCGACTCGACTATCGAGCT+AGG - chr5_2:55591104-55591123 Msa0776890:three_prime_UTR 55.0%
!! TCCCCTGAAAGCATCCTCTC+TGG + chr5_2:55591166-55591185 None:intergenic 55.0%
GTACGGGACAAAGGGTTGGA+CGG - chr5_2:55592495-55592514 Msa0776890:intron 55.0%
GGGCATGTAGAGAGAAGACC+TGG - chr5_2:55592686-55592705 Msa0776890:intron 55.0%
GACCTGGGGATGCTGTAGTT+AGG - chr5_2:55592702-55592721 Msa0776890:intron 55.0%
CTCCTAACTACAGCATCCCC+AGG + chr5_2:55592707-55592726 None:intergenic 55.0%
TGTATGTAGCCGACCCCACT+TGG - chr5_2:55592866-55592885 Msa0776890:intron 55.0%
CTTATCCCACCAAGTGGGGT+CGG + chr5_2:55592878-55592897 None:intergenic 55.0%
TGTATGTAGCCGACCCCACT+TGG - chr5_2:55592866-55592885 Msa0776890:intron 55.0%
CTTATCCCACCAAGTGGGGT+CGG + chr5_2:55592878-55592897 None:intergenic 55.0%
! CCAAGCCTTATCCCACCAAG+TGG + chr5_2:55593014-55593033 None:intergenic 55.0%
! CCACTTGGTGGGATAAGGCT+TGG - chr5_2:55592881-55592900 Msa0776890:intron 55.0%
CATGCCTGTCCTCGAAGCTT+AGG + chr5_2:55593398-55593417 None:intergenic 55.0%
CTAAGCTTCGAGGACAGGCA+TGG - chr5_2:55593396-55593415 Msa0776890:intron 55.0%
!! GAGAGCTTTAGGGAGAGACG+AGG - chr5_2:55594363-55594382 Msa0776890:intron 55.0%
!! GAGCTTTAGGGAGAGACGAG+GGG - chr5_2:55594365-55594384 Msa0776890:intron 55.0%
!! AGCTTTAGGGAGAGACGAGG+GGG - chr5_2:55594366-55594385 Msa0776890:intron 55.0%
! GGGGAATACCTCGCCTTGTT+TGG - chr5_2:55594385-55594404 Msa0776890:intron 55.0%
TCGAGAAGGAGGCTTACGAG+TGG - chr5_2:55594430-55594449 Msa0776890:intron 55.0%
AGAAAGAGAGGGGAGGGAAG+AGG - chr5_2:55594865-55594884 Msa0776890:CDS 55.0%
GAAAGAGAGGGGAGGGAAGA+GGG - chr5_2:55594866-55594885 Msa0776890:CDS 55.0%
AAAGAGAGGGGAGGGAAGAG+GGG - chr5_2:55594867-55594886 Msa0776890:CDS 55.0%
GTGGGGGATGAGGAAACTGA+TGG + chr5_2:55595341-55595360 None:intergenic 55.0%
!! TTGTAGTGGAGGGCTTTGGG+GGG - chr5_2:55595560-55595579 Msa0776890:intron 55.0%
TTTGGGGGGAGGGAAGTAGA+GGG - chr5_2:55595574-55595593 Msa0776890:intron 55.0%
!! AGAGGGGAGGAGAGTGCTTA+GGG + chr5_2:55595870-55595889 None:intergenic 55.0%
!! AAGAGGGGAGGAGAGTGCTT+AGG + chr5_2:55595871-55595890 None:intergenic 55.0%
GAGCATTTCGAGCATCCTGC+CGG + chr5_2:55596684-55596703 None:intergenic 55.0%
CGCTTGATCGAAGCAAAGCC+AGG - chr5_2:55596734-55596753 Msa0776890:intron 55.0%
ATGTAGCCGACCCCACTTGG+TGG - chr5_2:55592869-55592888 Msa0776890:intron 60.0%
TGTAGCCGACCCCACTTGGT+GGG - chr5_2:55592870-55592889 Msa0776890:intron 60.0%
! CGACCCCACTTGGTGGGATA+AGG - chr5_2:55592876-55592895 Msa0776890:intron 60.0%
ATGTAGCCGACCCCACTTGG+TGG - chr5_2:55592869-55592888 Msa0776890:intron 60.0%
TGTAGCCGACCCCACTTGGT+GGG - chr5_2:55592870-55592889 Msa0776890:intron 60.0%
! CGACCCCACTTGGTGGGATA+AGG - chr5_2:55592876-55592895 Msa0776890:intron 60.0%
GACGCCTAAGCTTCGAGGAC+AGG - chr5_2:55593391-55593410 Msa0776890:intron 60.0%
GAGGTGAGCAGTCGAGAAGG+AGG - chr5_2:55594419-55594438 Msa0776890:intron 60.0%
! CTTTGGGGGGAGGGAAGTAG+AGG - chr5_2:55595573-55595592 Msa0776890:intron 60.0%
AGCAGGCCTCATTCCGTCCA+GGG - chr5_2:55596591-55596610 Msa0776890:intron 60.0%
GTTGGGAGCAGCTGCCTCTT+GGG + chr5_2:55596624-55596643 None:intergenic 60.0%
TGTTGGGAGCAGCTGCCTCT+TGG + chr5_2:55596625-55596644 None:intergenic 60.0%
GTGTGGGAGGGAACATGGGG+TGG + chr5_2:55595374-55595393 None:intergenic 65.0%
!! TAGTGGAGGGCTTTGGGGGG+AGG - chr5_2:55595563-55595582 Msa0776890:intron 65.0%
!! AGTGGAGGGCTTTGGGGGGA+GGG - chr5_2:55595564-55595583 Msa0776890:intron 65.0%
CAGCAGGCCTCATTCCGTCC+AGG - chr5_2:55596590-55596609 Msa0776890:intron 65.0%
GCCTCATTCCGTCCAGGGTC+CGG - chr5_2:55596596-55596615 Msa0776890:intron 65.0%
ACCGGACCCTGGACGGAATG+AGG + chr5_2:55596600-55596619 None:intergenic 65.0%
AGCAGCTGCCTCTTGGGCAC+CGG + chr5_2:55596618-55596637 None:intergenic 65.0%
!! CTTGGGCACCGGACCCTGGA+CGG + chr5_2:55596607-55596626 None:intergenic 70.0%
TCCAGGGTCCGGTGCCCAAG+AGG - chr5_2:55596607-55596626 Msa0776890:intron 70.0%
!! GCCTCTTGGGCACCGGACCC+TGG + chr5_2:55596611-55596630 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 55591104 55597189 55591104 ID=Msa0776890;Name=Msa0776890
chr5_2 mRNA 55591104 55597189 55591104 ID=Msa0776890-mRNA-1;Parent=Msa0776890;Name=Msa0776890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=68|1|1|1|0.5|0.8|5|318|234
chr5_2 exon 55591104 55591700 55591104 ID=Msa0776890-mRNA-1:exon:16435;Parent=Msa0776890-mRNA-1
chr5_2 exon 55592179 55592264 55592179 ID=Msa0776890-mRNA-1:exon:16434;Parent=Msa0776890-mRNA-1
chr5_2 exon 55594201 55594294 55594201 ID=Msa0776890-mRNA-1:exon:16433;Parent=Msa0776890-mRNA-1
chr5_2 exon 55594797 55594969 55594797 ID=Msa0776890-mRNA-1:exon:16432;Parent=Msa0776890-mRNA-1
chr5_2 exon 55597049 55597189 55597049 ID=Msa0776890-mRNA-1:exon:16431;Parent=Msa0776890-mRNA-1
chr5_2 five_prime_UTR 55597122 55597189 55597122 ID=Msa0776890-mRNA-1:five_prime_utr;Parent=Msa0776890-mRNA-1
chr5_2 CDS 55597049 55597121 55597049 ID=Msa0776890-mRNA-1:cds;Parent=Msa0776890-mRNA-1
chr5_2 CDS 55594797 55594969 55594797 ID=Msa0776890-mRNA-1:cds;Parent=Msa0776890-mRNA-1
chr5_2 CDS 55594201 55594294 55594201 ID=Msa0776890-mRNA-1:cds;Parent=Msa0776890-mRNA-1
chr5_2 CDS 55592179 55592264 55592179 ID=Msa0776890-mRNA-1:cds;Parent=Msa0776890-mRNA-1
chr5_2 CDS 55591422 55591700 55591422 ID=Msa0776890-mRNA-1:cds;Parent=Msa0776890-mRNA-1
chr5_2 three_prime_UTR 55591104 55591421 55591104 ID=Msa0776890-mRNA-1:three_prime_utr;Parent=Msa0776890-mRNA-1
Gene Sequence

>Msa0776890

ATGCTTTCAGGGGATATACCTCCAAATCAAACCATTTACATTAAGAATCTCAATGAAAAGATCAAGAAAGACGAGTTAAAGAGATCTCTGTATTGCTTATTCTCTCAATATGGAAGGATTTTGGACATTATTGCTCTAAAGACGCCTAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGCGAAGTAACTGCTGCCAGTAATGCAGTGCGACAGATGCAAAACTTCCCATTTTATGAAAAACCTATGAGAATTCAATATGCAAAAACAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGCTTTGTTCCAAGGGAGAAGAAAAAGAAACAAGAGGAGAAAGCTGAGAAAAAGAGGTATGCTGATGAATCAAAACAATCTTCTGTGCCTAATGGTGGAACACATGGTGCAAGTAATGGTGGCTCAACACAGGCCTCATTCCGTCCAGGGTCCGGTGCCCAAGAGGCAGCTGCTCCCAACAATATTTTGTTCATAGAGAATTTGCCTTATGAAACTACCGGCAGGATGCTCGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGCTTGATCGAAGCAAAGCCAGGTATCGCATTTGTAGATTTTGAAGATGAGGCACAATCATCCATGGCAATGCAGGCTCTACAAGGCTTCAAAATCACCCCTCAAAATCCCATGATTATAAACTTTGCTAAGAAGTAA

Protein sequence

>Msa0776890

MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKRYADESKQSSVPNGGTHGASNGGSTQASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEAQSSMAMQALQGFKITPQNPMIINFAKK*