Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582070 | XP_013450311.1 | 98.068 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.43e-146 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582070 | sp|O65731|RS5_CICAR | 93.333 | 195 | 13 | 0 | 13 | 207 | 3 | 197 | 2.98e-133 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582070 | I3SKT5 | 98.068 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 6.84e-147 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0582070 | 0.817838 | 2.678542e-52 | -8.615850e-47 |
| Msa0003330 | Msa0582070 | 0.811574 | 6.540724e-51 | -8.615850e-47 |
| Msa0003360 | Msa0582070 | 0.805464 | 1.318050e-49 | -8.615850e-47 |
| Msa0021290 | Msa0582070 | 0.844364 | 7.915013e-59 | -8.615850e-47 |
| Msa0021320 | Msa0582070 | 0.823345 | 1.456347e-53 | -8.615850e-47 |
| Msa0027590 | Msa0582070 | 0.873577 | 1.320202e-67 | -8.615850e-47 |
| Msa0040220 | Msa0582070 | 0.856866 | 2.406966e-62 | -8.615850e-47 |
| Msa0072570 | Msa0582070 | 0.809870 | 1.528104e-50 | -8.615850e-47 |
| Msa0075350 | Msa0582070 | 0.835924 | 1.263805e-56 | -8.615850e-47 |
| Msa0087910 | Msa0582070 | 0.822496 | 2.296526e-53 | -8.615850e-47 |
| Msa0094210 | Msa0582070 | 0.964005 | 8.746348e-123 | -8.615850e-47 |
| Msa0132460 | Msa0582070 | 0.832281 | 1.034034e-55 | -8.615850e-47 |
| Msa0134580 | Msa0582070 | 0.861433 | 1.029327e-63 | -8.615850e-47 |
| Msa0167860 | Msa0582070 | 0.804954 | 1.685501e-49 | -8.615850e-47 |
| Msa0182050 | Msa0582070 | 0.837068 | 6.464645e-57 | -8.615850e-47 |
| Msa0191450 | Msa0582070 | 0.856310 | 3.508200e-62 | -8.615850e-47 |
| Msa0191550 | Msa0582070 | 0.845657 | 3.541607e-59 | -8.615850e-47 |
| Msa0192050 | Msa0582070 | 0.801476 | 8.845717e-49 | -8.615850e-47 |
| Msa0192300 | Msa0582070 | 0.820398 | 7.006747e-53 | -8.615850e-47 |
| Msa0194940 | Msa0582070 | 0.823026 | 1.728382e-53 | -8.615850e-47 |
| Msa0195030 | Msa0582070 | 0.822604 | 2.167159e-53 | -8.615850e-47 |
| Msa0233550 | Msa0582070 | 0.809686 | 1.673777e-50 | -8.615850e-47 |
| Msa0237180 | Msa0582070 | 0.804049 | 2.603460e-49 | -8.615850e-47 |
| Msa0371490 | Msa0582070 | 0.841820 | 3.768666e-58 | -8.615850e-47 |
| Msa0377520 | Msa0582070 | 0.802034 | 6.795438e-49 | -8.615850e-47 |
| Msa0382670 | Msa0582070 | 0.803542 | 3.316601e-49 | -8.615850e-47 |
| Msa0388520 | Msa0582070 | 0.839791 | 1.282817e-57 | -8.615850e-47 |
| Msa0426090 | Msa0582070 | 0.865788 | 4.578236e-65 | -8.615850e-47 |
| Msa0426250 | Msa0582070 | 0.836062 | 1.166406e-56 | -8.615850e-47 |
| Msa0430130 | Msa0582070 | 0.817178 | 3.772209e-52 | -8.615850e-47 |
| Msa0472480 | Msa0582070 | 0.873187 | 1.786243e-67 | -8.615850e-47 |
| Msa0475810 | Msa0582070 | 0.849038 | 4.179187e-60 | -8.615850e-47 |
| Msa0481520 | Msa0582070 | 0.848274 | 6.801702e-60 | -8.615850e-47 |
| Msa0239420 | Msa0582070 | 0.822777 | 1.975795e-53 | -8.615850e-47 |
| Msa0243750 | Msa0582070 | 0.844715 | 6.366316e-59 | -8.615850e-47 |
| Msa0277600 | Msa0582070 | 0.813758 | 2.176728e-51 | -8.615850e-47 |
| Msa0281370 | Msa0582070 | 0.831337 | 1.767259e-55 | -8.615850e-47 |
| Msa0282290 | Msa0582070 | 0.842582 | 2.368459e-58 | -8.615850e-47 |
| Msa0301250 | Msa0582070 | 0.819929 | 8.970667e-53 | -8.615850e-47 |
| Msa0313060 | Msa0582070 | 0.825789 | 3.869428e-54 | -8.615850e-47 |
| Msa0315430 | Msa0582070 | 0.809627 | 1.723529e-50 | -8.615850e-47 |
| Msa0315660 | Msa0582070 | 0.811361 | 7.275489e-51 | -8.615850e-47 |
| Msa0340560 | Msa0582070 | 0.820357 | 7.158874e-53 | -8.615850e-47 |
| Msa0517480 | Msa0582070 | 0.826876 | 2.132178e-54 | -8.615850e-47 |
| Msa0529900 | Msa0582070 | 0.806308 | 8.761102e-50 | -8.615850e-47 |
| Msa0547920 | Msa0582070 | 0.825132 | 5.537705e-54 | -8.615850e-47 |
| Msa0550100 | Msa0582070 | 0.812355 | 4.420757e-51 | -8.615850e-47 |
| Msa0573550 | Msa0582070 | 0.875450 | 3.052828e-68 | -8.615850e-47 |
| Msa0582070 | Msa0597240 | 0.832583 | 8.702496e-56 | -8.615850e-47 |
| Msa0582070 | Msa0602900 | 0.812779 | 3.570170e-51 | -8.615850e-47 |
| Msa0582070 | Msa0605890 | 0.814429 | 1.547621e-51 | -8.615850e-47 |
| Msa0582070 | Msa0619230 | 0.847149 | 1.388525e-59 | -8.615850e-47 |
| Msa0582070 | Msa0622230 | 0.836951 | 6.925756e-57 | -8.615850e-47 |
| Msa0582070 | Msa0643960 | 0.814855 | 1.245691e-51 | -8.615850e-47 |
| Msa0582070 | Msa0653060 | 0.814564 | 1.444951e-51 | -8.615850e-47 |
| Msa0582070 | Msa0704860 | 0.823823 | 1.125316e-53 | -8.615850e-47 |
| Msa0582070 | Msa0708630 | 0.833596 | 4.871510e-56 | -8.615850e-47 |
| Msa0582070 | Msa0738420 | 0.806520 | 7.905805e-50 | -8.615850e-47 |
| Msa0582070 | Msa0748350 | 0.833208 | 6.086860e-56 | -8.615850e-47 |
| Msa0582070 | Msa0758420 | 0.805459 | 1.321260e-49 | -8.615850e-47 |
| Msa0582070 | Msa0776890 | 0.803467 | 3.438427e-49 | -8.615850e-47 |
| Msa0582070 | Msa0788380 | 0.840987 | 6.242568e-58 | -8.615850e-47 |
| Msa0582070 | Msa0790450 | 0.808749 | 2.657950e-50 | -8.615850e-47 |
| Msa0582070 | Msa0822580 | 0.842354 | 2.722250e-58 | -8.615850e-47 |
| Msa0582070 | Msa0838070 | 0.818010 | 2.450230e-52 | -8.615850e-47 |
| Msa0582070 | Msa0861320 | 0.803255 | 3.803558e-49 | -8.615850e-47 |
| Msa0582070 | Msa0880050 | 0.803924 | 2.763584e-49 | -8.615850e-47 |
| Msa0582070 | Msa0929700 | 0.864970 | 8.287000e-65 | -8.615850e-47 |
| Msa0582070 | Msa0930360 | 0.803976 | 2.696123e-49 | -8.615850e-47 |
| Msa0582070 | Msa0930790 | 0.826078 | 3.304780e-54 | -8.615850e-47 |
| Msa0582070 | Msa1001620 | 0.817021 | 4.092649e-52 | -8.615850e-47 |
| Msa0582070 | Msa1025200 | 0.810453 | 1.144057e-50 | -8.615850e-47 |
| Msa0582070 | Msa1025220 | 0.805282 | 1.439027e-49 | -8.615850e-47 |
| Msa0582070 | Msa1037290 | 0.824918 | 6.221435e-54 | -8.615850e-47 |
| Msa0582070 | Msa1040160 | 0.803182 | 3.938306e-49 | -8.615850e-47 |
| Msa0582070 | Msa1041680 | 0.857882 | 1.205937e-62 | -8.615850e-47 |
| Msa0582070 | Msa1042100 | 0.810595 | 1.065908e-50 | -8.615850e-47 |
| Msa0582070 | Msa1050100 | 0.808489 | 3.019915e-50 | -8.615850e-47 |
| Msa0582070 | Msa1054280 | 0.809214 | 2.113835e-50 | -8.615850e-47 |
| Msa0582070 | Msa1082170 | 0.834674 | 2.615261e-56 | -8.615850e-47 |
| Msa0582070 | Msa1083370 | 0.820225 | 7.674892e-53 | -8.615850e-47 |
| Msa0582070 | Msa1144610 | 0.874537 | 6.252217e-68 | -8.615850e-47 |
| Msa0582070 | Msa1164150 | 0.847782 | 9.299938e-60 | -8.615850e-47 |
| Msa0582070 | Msa1165640 | 0.837813 | 4.164018e-57 | -8.615850e-47 |
| Msa0582070 | Msa1166570 | 0.858971 | 5.709587e-63 | -8.615850e-47 |
| Msa0582070 | Msa1166670 | 0.926739 | 3.099432e-91 | -8.615850e-47 |
| Msa0582070 | Msa1167360 | 0.809413 | 1.915992e-50 | -8.615850e-47 |
| Msa0582070 | Msa1186030 | 0.842811 | 2.058603e-58 | -8.615850e-47 |
| Msa0582070 | Msa1206240 | 0.837612 | 4.690707e-57 | -8.615850e-47 |
| Msa0582070 | Msa1218170 | 0.817549 | 3.113440e-52 | -8.615850e-47 |
| Msa0582070 | Msa1220580 | 0.808947 | 2.411325e-50 | -8.615850e-47 |
| Msa0582070 | Msa1237040 | 0.822466 | 2.333647e-53 | -8.615850e-47 |
| Msa0582070 | Msa1240270 | 0.831844 | 1.326024e-55 | -8.615850e-47 |
| Msa0582070 | Msa1245270 | 0.811341 | 7.349141e-51 | -8.615850e-47 |
| Msa0582070 | Msa1317390 | 0.809064 | 2.276047e-50 | -8.615850e-47 |
| Msa0582070 | Msa1334560 | 0.811086 | 8.344836e-51 | -8.615850e-47 |
| Msa0582070 | Msa1351020 | 0.846744 | 1.791553e-59 | -8.615850e-47 |
| Msa0582070 | Msa1363910 | 0.972541 | 6.185774e-135 | -8.615850e-47 |
| Msa0582070 | Msa1368920 | 0.827773 | 1.299939e-54 | -8.615850e-47 |
| Msa0582070 | Msa1390760 | 0.843764 | 1.146162e-58 | -8.615850e-47 |
| Msa0582070 | Msa1423050 | 0.804491 | 2.106182e-49 | -8.615850e-47 |
| Msa0582070 | Msa1424570 | 0.803384 | 3.577546e-49 | -8.615850e-47 |
| Msa0582070 | Msa1432310 | 0.827336 | 1.655053e-54 | -8.615850e-47 |
| Msa0582070 | Msa1449160 | 0.997800 | 1.816436e-249 | -8.615850e-47 |
| Msa0582070 | Msa1450560 | 0.815788 | 7.725433e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582070 | MtrunA17_Chr7g0268431 | 98.068 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.32e-150 | 416 |
| Msa0582070 | MtrunA17_Chr1g0176261 | 94.737 | 209 | 7 | 3 | 1 | 207 | 33 | 239 | 7.11e-141 | 392 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582070 | AT2G37270.1 | 88.557 | 201 | 22 | 1 | 8 | 207 | 7 | 207 | 6.29e-132 | 369 |
| Msa0582070 | AT2G37270.2 | 88.557 | 201 | 22 | 1 | 8 | 207 | 7 | 207 | 6.29e-132 | 369 |
| Msa0582070 | AT3G11940.1 | 89.529 | 191 | 20 | 0 | 17 | 207 | 17 | 207 | 2.40e-130 | 365 |
| Msa0582070 | AT3G11940.2 | 89.529 | 191 | 20 | 0 | 17 | 207 | 17 | 207 | 2.40e-130 | 365 |
Find 73 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATATAAATACAAATCT+AGG | 0.236520 | 4_1:-87772200 | None:intergenic |
| CAGCTATGCGATCAAGAAAA+AGG | 0.316264 | 4_1:-87768509 | Msa0582070:CDS |
| GCATCAACTATAACTTGAAT+TGG | 0.326315 | 4_1:+87771240 | None:intergenic |
| GAGCTTGACTTCGTTTAGAT+TGG | 0.348914 | 4_1:+87771966 | None:intergenic |
| TCCTCTTCGTCGTGTTAATC+AGG | 0.349057 | 4_1:-87768745 | Msa0582070:CDS |
| ACCAGTTGTTAGAAGATATA+TGG | 0.352278 | 4_1:+87768722 | None:intergenic |
| AGAGAAGATGCAACCAGAAT+TGG | 0.353281 | 4_1:-87768807 | Msa0582070:CDS |
| AACACGTCAGCTTGGAAAAC+TGG | 0.359904 | 4_1:+87768196 | None:intergenic |
| GTGCCCGTGAAGCTGCATTT+AGG | 0.361118 | 4_1:-87768701 | Msa0582070:CDS |
| TTGGATCTGCTGGAGTTGTT+AGG | 0.369348 | 4_1:-87768788 | Msa0582070:CDS |
| AGGAACATATGTTGCATGTT+TGG | 0.372138 | 4_1:+87771434 | None:intergenic |
| GCCAATCGTTAAGCATCATT+TGG | 0.372423 | 4_1:-87768463 | Msa0582070:exon |
| GAGGAAAATAAACCAGTAAA+AGG | 0.394902 | 4_1:+87768354 | None:intergenic |
| ATGGAGCTTTGACGACGTTC+AGG | 0.402177 | 4_1:-87771935 | Msa0582070:intron |
| GCCATATATCTTCTAACAAC+TGG | 0.404354 | 4_1:-87768723 | Msa0582070:CDS |
| CGCGGCCGTCAGCTTCTCAC+TGG | 0.409187 | 4_1:+87772137 | None:intergenic |
| GGTACTCAAAGAAGCGCTTC+AGG | 0.411900 | 4_1:-87771398 | Msa0582070:CDS |
| AGCTTGACTTCGTTTAGATT+GGG | 0.412691 | 4_1:+87771967 | None:intergenic |
| CTTAGTCCATGACTGTTTCA+AGG | 0.413064 | 4_1:-87768295 | Msa0582070:three_prime_UTR |
| GAAAGAAACTCATGGCTGTT+AGG | 0.417495 | 4_1:-87771311 | Msa0582070:CDS |
| CAGATTACCGATCTGTCTCT+TGG | 0.434208 | 4_1:-87771480 | Msa0582070:CDS |
| AGATTACCGATCTGTCTCTT+GGG | 0.440013 | 4_1:-87771479 | Msa0582070:CDS |
| GCAACCAGAATTGGATCTGC+TGG | 0.442717 | 4_1:-87768798 | Msa0582070:CDS |
| GAAGGCAAAGCAAGAGTGAC+AGG | 0.449142 | 4_1:+87772171 | None:intergenic |
| TAGTTGATGCTGTCGTCAAC+AGG | 0.451278 | 4_1:-87771227 | Msa0582070:intron |
| TGCTGGAGTTGTTAGGAGGC+AGG | 0.469034 | 4_1:-87768781 | Msa0582070:CDS |
| TGATGCTTAACGATTGGCCT+TGG | 0.471931 | 4_1:+87768468 | None:intergenic |
| AGATTGGGATCAACTTCGAC+TGG | 0.475242 | 4_1:+87771982 | None:intergenic |
| CTGCCAAGGGTTCATCCAAC+AGG | 0.475684 | 4_1:-87768632 | Msa0582070:intron |
| ATTCTGGTTGCATCTTCTCT+AGG | 0.476377 | 4_1:+87768810 | None:intergenic |
| TCAATATAAATACAAATCTA+GGG | 0.483881 | 4_1:-87772199 | None:intergenic |
| TGTTCCTAAATGCAGCTTCA+CGG | 0.488373 | 4_1:+87768697 | None:intergenic |
| CTGTCTCTTGGGGATTACAT+TGG | 0.493111 | 4_1:-87771468 | Msa0582070:CDS |
| AACTCCAGCAGATCCAATTC+TGG | 0.495047 | 4_1:+87768794 | None:intergenic |
| TCCAAATGATGCTTAACGAT+TGG | 0.503018 | 4_1:+87768462 | None:intergenic |
| TAAGACAATTGCTGAATGCT+TGG | 0.507627 | 4_1:-87768673 | Msa0582070:CDS |
| TCAGCTTGGAAAACTGGTAT+TGG | 0.512119 | 4_1:+87768202 | None:intergenic |
| GTTCCTAAATGCAGCTTCAC+GGG | 0.512374 | 4_1:+87768698 | None:intergenic |
| AGTTGTTAGGAGGCAGGCTG+TGG | 0.516790 | 4_1:-87768775 | Msa0582070:CDS |
| ACATATGTTCCTCACACTGC+TGG | 0.521105 | 4_1:-87771423 | Msa0582070:CDS |
| GGGGATTACATTGGAGCAAG+AGG | 0.537561 | 4_1:-87771459 | Msa0582070:CDS |
| AATACTTCAACACGTCAGCT+TGG | 0.541551 | 4_1:+87768188 | None:intergenic |
| TTAGTGAGCCTCTCAACAAT+GGG | 0.543323 | 4_1:+87771363 | None:intergenic |
| TGAGATTGAGAGAGTTGCCA+AGG | 0.553654 | 4_1:-87768485 | Msa0582070:CDS |
| GAACGTCGTCAAAGCTCCAT+TGG | 0.555775 | 4_1:+87771938 | None:intergenic |
| ATACCTGTTGGATGAACCCT+TGG | 0.559348 | 4_1:+87768629 | None:intergenic |
| GATCTGCTGGAGTTGTTAGG+AGG | 0.561323 | 4_1:-87768785 | Msa0582070:CDS |
| TGAACTCATTAACGCTGCCA+AGG | 0.562075 | 4_1:-87768646 | Msa0582070:CDS |
| GTTAGTGAGCCTCTCAACAA+TGG | 0.562680 | 4_1:+87771362 | None:intergenic |
| AAGTCAAGCTCTTCAACCAA+TGG | 0.580728 | 4_1:-87771954 | Msa0582070:CDS |
| CGATGGTTGAAATGATATGC+TGG | 0.590544 | 4_1:-87768145 | Msa0582070:three_prime_UTR |
| CTCAGTGTCCCATTGTTGAG+AGG | 0.591866 | 4_1:-87771371 | Msa0582070:CDS |
| AATGATCCTTGAAACAGTCA+TGG | 0.599615 | 4_1:+87768289 | None:intergenic |
| ACAAGTCAATTCAACGTGAG+AGG | 0.604212 | 4_1:+87768335 | None:intergenic |
| TTAAATAAAGATGTAATACA+AGG | 0.605416 | 4_1:+87768404 | None:intergenic |
| GATTGGGATCAACTTCGACT+GGG | 0.607523 | 4_1:+87771983 | None:intergenic |
| GCCGCGCCGCACTATCTACA+AGG | 0.608102 | 4_1:-87772120 | Msa0582070:intron |
| GATTACCGATCTGTCTCTTG+GGG | 0.611070 | 4_1:-87771478 | Msa0582070:CDS |
| GTAATCCCCAAGAGACAGAT+CGG | 0.613626 | 4_1:+87771473 | None:intergenic |
| GAACTCATTAACGCTGCCAA+GGG | 0.615553 | 4_1:-87768645 | Msa0582070:CDS |
| ATGATGCACGGCAGAAACAA+CGG | 0.618587 | 4_1:-87771333 | Msa0582070:CDS |
| TAGGATCATTAAGCATGCCA+TGG | 0.620948 | 4_1:-87771292 | Msa0582070:CDS |
| AGCGACGGTTTCATCAGCCA+TGG | 0.634868 | 4_1:+87772008 | None:intergenic |
| TAGCAAGTGAATGATCTCCA+TGG | 0.641966 | 4_1:+87771275 | None:intergenic |
| AAACAACGGAAAGAAACTCA+TGG | 0.646751 | 4_1:-87771319 | Msa0582070:CDS |
| ATGTTCCTCACACTGCTGGT+AGG | 0.649707 | 4_1:-87771419 | Msa0582070:CDS |
| ACTAACTCTCTCATGATGCA+CGG | 0.651624 | 4_1:-87771345 | Msa0582070:CDS |
| GCCTGATTAACACGACGAAG+AGG | 0.651878 | 4_1:+87768744 | None:intergenic |
| AAGCTACCTTGTAGATAGTG+CGG | 0.671061 | 4_1:+87772114 | None:intergenic |
| AACTTCGACTGGGATAGCGA+CGG | 0.675722 | 4_1:+87771993 | None:intergenic |
| AAGGCAAAGCAAGAGTGACA+GGG | 0.684074 | 4_1:+87772172 | None:intergenic |
| GAGTACCTACCAGCAGTGTG+AGG | 0.691601 | 4_1:+87771414 | None:intergenic |
| ACCTTGTAGATAGTGCGGCG+CGG | 0.782232 | 4_1:+87772119 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTGAATTATTATTAAT+TGG | - | chr4_1:87769799-87769818 | Msa0582070:intron | 10.0% |
| !!! | TTTCAATAAATATTTTATCT+TGG | - | chr4_1:87770387-87770406 | Msa0582070:intron | 10.0% |
| !!! | AATACTTTTTTGAATATTTA+AGG | - | chr4_1:87771133-87771152 | Msa0582070:intron | 10.0% |
| !!! | ATACTTTTTTGAATATTTAA+GGG | - | chr4_1:87771134-87771153 | Msa0582070:intron | 10.0% |
| !!! | AATTATATTATTTTATGTAG+TGG | - | chr4_1:87771498-87771517 | Msa0582070:intron | 10.0% |
| !!! | GCTATTTTCATAATTTATAT+TGG | - | chr4_1:87768626-87768645 | Msa0582070:intron | 15.0% |
| !!! | ATAAATCAACTTGAATTTTT+TGG | - | chr4_1:87769438-87769457 | Msa0582070:intron | 15.0% |
| !!! | TGTTTTTAAATTGTTAAAAC+TGG | - | chr4_1:87769833-87769852 | Msa0582070:intron | 15.0% |
| !!! | GTTTTTAAATTGTTAAAACT+GGG | - | chr4_1:87769834-87769853 | Msa0582070:intron | 15.0% |
| !! | AATTTATCTGTTTACATATA+GGG | + | chr4_1:87770567-87770586 | None:intergenic | 15.0% |
| !! | TAATTTATCTGTTTACATAT+AGG | + | chr4_1:87770568-87770587 | None:intergenic | 15.0% |
| !!! | AAACTTTAAAGATTGAATAA+TGG | + | chr4_1:87771733-87771752 | None:intergenic | 15.0% |
| !!! | TGATGAGAAATATTTTATTT+TGG | - | chr4_1:87771904-87771923 | Msa0582070:intron | 15.0% |
| !! | TTAAATAAAGATGTAATACA+AGG | + | chr4_1:87771931-87771950 | None:intergenic | 15.0% |
| !! | ACTTACTAAAAAAACCATTA+AGG | + | chr4_1:87768771-87768790 | None:intergenic | 20.0% |
| !! | GTCAATATATATCAATCATA+GGG | + | chr4_1:87769161-87769180 | None:intergenic | 20.0% |
| !! | AGTCAATATATATCAATCAT+AGG | + | chr4_1:87769162-87769181 | None:intergenic | 20.0% |
| !! | AATAATATGAAACAGATCAA+TGG | + | chr4_1:87769239-87769258 | None:intergenic | 20.0% |
| !!! | TTGAAATTGAATTTTTGATG+CGG | - | chr4_1:87769258-87769277 | Msa0582070:intron | 20.0% |
| !!! | ATGATTATTTGTTTTCCTAT+TGG | - | chr4_1:87769318-87769337 | Msa0582070:intron | 20.0% |
| !!! | ATTTTAATAAAACAAAGTCC+AGG | + | chr4_1:87769664-87769683 | None:intergenic | 20.0% |
| !! | TCACTTATACATAACAAATA+AGG | + | chr4_1:87769966-87769985 | None:intergenic | 20.0% |
| !! | GTATAAGTGATCAAATATAT+AGG | - | chr4_1:87769976-87769995 | Msa0582070:intron | 20.0% |
| !! | TTTATAGCATTATAACTACA+TGG | + | chr4_1:87770024-87770043 | None:intergenic | 20.0% |
| !!! | ATGCTATAAATATTTTGTGA+TGG | - | chr4_1:87770034-87770053 | Msa0582070:intron | 20.0% |
| !!! | TGTTTTGTGATCAAATATAT+AGG | - | chr4_1:87770059-87770078 | Msa0582070:intron | 20.0% |
| !! | TTTATAGCATTATAACTACA+TGG | + | chr4_1:87770024-87770043 | None:intergenic | 20.0% |
| !!! | ATGCTATAAATATTTTGTGA+TGG | - | chr4_1:87770034-87770053 | Msa0582070:intron | 20.0% |
| !! | GATTACAATATGACAAAATA+AGG | + | chr4_1:87770351-87770370 | None:intergenic | 20.0% |
| !! | TGTCATATTGTAATCAAATT+TGG | - | chr4_1:87770356-87770375 | Msa0582070:intron | 20.0% |
| !! | GTCATATTGTAATCAAATTT+GGG | - | chr4_1:87770357-87770376 | Msa0582070:intron | 20.0% |
| !! | TCATATTGTAATCAAATTTG+GGG | - | chr4_1:87770358-87770377 | Msa0582070:intron | 20.0% |
| !! | GATTACAATATGACAAAATA+AGG | + | chr4_1:87770351-87770370 | None:intergenic | 20.0% |
| !!! | TAATTGTTTGTTTTTTTCCT+CGG | - | chr4_1:87770930-87770949 | Msa0582070:intron | 20.0% |
| !! | ATGATTTATTATTTCCCTAT+TGG | - | chr4_1:87770550-87770569 | Msa0582070:intron | 20.0% |
| !! | TATTAACAATTAACTGTGTA+TGG | - | chr4_1:87771333-87771352 | Msa0582070:CDS | 20.0% |
| !!! | AACATTGTTGTTTTTAAACA+TGG | - | chr4_1:87771949-87771968 | Msa0582070:CDS | 20.0% |
| !!! | TTTTTACATTTCTGCTATTT+AGG | - | chr4_1:87772093-87772112 | Msa0582070:intron | 20.0% |
| ! | TAATTCAATGATTAGGGTTA+GGG | + | chr4_1:87768295-87768314 | None:intergenic | 25.0% |
| ! | ATAATTCAATGATTAGGGTT+AGG | + | chr4_1:87768296-87768315 | None:intergenic | 25.0% |
| ! | CGTGAATAATTCAATGATTA+GGG | + | chr4_1:87768301-87768320 | None:intergenic | 25.0% |
| !!! | TATTTTCAAGTAACTCATGT+CGG | - | chr4_1:87768712-87768731 | Msa0582070:CDS | 25.0% |
| ! | TCAAATAAGCCAATCTAAAT+AGG | - | chr4_1:87768744-87768763 | Msa0582070:CDS | 25.0% |
| ! | GAAAAAAGTGACAAATGATA+AGG | + | chr4_1:87769396-87769415 | None:intergenic | 25.0% |
| !!! | TTAAGAATTTTGACAATGCA+TGG | - | chr4_1:87769477-87769496 | Msa0582070:intron | 25.0% |
| ! | TTGTTTATTCTCACTTTGTT+TGG | - | chr4_1:87769755-87769774 | Msa0582070:intron | 25.0% |
| ! | GATGATTTATTGTTTCCTAT+TGG | - | chr4_1:87769889-87769908 | Msa0582070:intron | 25.0% |
| ! | TGATTAATACTTGATAGAGA+AGG | - | chr4_1:87770162-87770181 | Msa0582070:intron | 25.0% |
| !!! | ACTATTTTAGCTGTTAAGAT+TGG | - | chr4_1:87770218-87770237 | Msa0582070:intron | 25.0% |
| !!! | CTATTTTAGCTGTTAAGATT+GGG | - | chr4_1:87770219-87770238 | Msa0582070:intron | 25.0% |
| !!! | TATTTTAGCTGTTAAGATTG+GGG | - | chr4_1:87770220-87770239 | Msa0582070:intron | 25.0% |
| !!! | GATGATTTTTTGTTTCCTAT+TGG | - | chr4_1:87770274-87770293 | Msa0582070:intron | 25.0% |
| ! | AGTAATCAATTAATCATGCA+TGG | - | chr4_1:87770411-87770430 | Msa0582070:intron | 25.0% |
| !! | GTAATTTTTACTTGTACGAA+AGG | - | chr4_1:87770456-87770475 | Msa0582070:intron | 25.0% |
| ! | TAAATCATCATTTCATTCTC+CGG | + | chr4_1:87769878-87769897 | None:intergenic | 25.0% |
| !!! | AAGTTTGAAATCTTTTCTTG+TGG | - | chr4_1:87770969-87770988 | Msa0582070:intron | 25.0% |
| ! | ATTGAAAGGAGAAAATGAAA+TGG | + | chr4_1:87771288-87771307 | None:intergenic | 25.0% |
| ! | CGAGAAACAAATTGTAAATA+AGG | - | chr4_1:87771379-87771398 | Msa0582070:CDS | 25.0% |
| ! | TTAATTCAAAGCAAAAACTG+AGG | - | chr4_1:87771419-87771438 | Msa0582070:CDS | 25.0% |
| ! | ACATATCCTAAAACTAAAAC+TGG | + | chr4_1:87771464-87771483 | None:intergenic | 25.0% |
| !! | CTTTAAAGATTGAATAATGG+TGG | + | chr4_1:87771730-87771749 | None:intergenic | 25.0% |
| ! | AGAAAACAAATTCAGTACAT+TGG | + | chr4_1:87771756-87771775 | None:intergenic | 25.0% |
| GCGTGAATAATTCAATGATT+AGG | + | chr4_1:87768302-87768321 | None:intergenic | 30.0% | |
| CATTAAGGACCTATTTAGAT+TGG | + | chr4_1:87768756-87768775 | None:intergenic | 30.0% | |
| CAATCTAAATAGGTCCTTAA+TGG | - | chr4_1:87768754-87768773 | Msa0582070:CDS | 30.0% | |
| GCATCAACTATAACTTGAAT+TGG | + | chr4_1:87769095-87769114 | None:intergenic | 30.0% | |
| GGGAAAATAACAAAATGCAA+AGG | + | chr4_1:87769141-87769160 | None:intergenic | 30.0% | |
| CTGCTTAATATGTCTTGATT+TGG | - | chr4_1:87769284-87769303 | Msa0582070:intron | 30.0% | |
| !! | ATATGTCTTGATTTGGAGAA+TGG | - | chr4_1:87769291-87769310 | Msa0582070:intron | 30.0% |
| ATTCAGGTATTCAAACCAAT+AGG | + | chr4_1:87769336-87769355 | None:intergenic | 30.0% | |
| TACAAAAAATGCCATCATTC+AGG | + | chr4_1:87769352-87769371 | None:intergenic | 30.0% | |
| TTGATTTACTGTTTCCCTAT+TGG | - | chr4_1:87769587-87769606 | Msa0582070:intron | 30.0% | |
| ACATGCATTATTACTGTTGA+GGG | + | chr4_1:87769691-87769710 | None:intergenic | 30.0% | |
| ATACAAAAACGTCATCATCT+AGG | + | chr4_1:87769923-87769942 | None:intergenic | 30.0% | |
| AATACTTGATAGAGAAGGAT+AGG | - | chr4_1:87770167-87770186 | Msa0582070:intron | 30.0% | |
| !!! | ATTTTAGCTGTTAAGATTGG+GGG | - | chr4_1:87770221-87770240 | Msa0582070:intron | 30.0% |
| !! | TTGTTTCCTATTGGTTTGAT+TGG | - | chr4_1:87769898-87769917 | Msa0582070:intron | 30.0% |
| ATTAAAGCAGTAAAGTGTGA+AGG | - | chr4_1:87770601-87770620 | Msa0582070:intron | 30.0% | |
| ACAGCCATAGTTATCAATAT+TGG | - | chr4_1:87770775-87770794 | Msa0582070:intron | 30.0% | |
| CAGCCATAGTTATCAATATT+GGG | - | chr4_1:87770776-87770795 | Msa0582070:intron | 30.0% | |
| ! | CAACCCAATATTGATAACTA+TGG | + | chr4_1:87770782-87770801 | None:intergenic | 30.0% |
| TCAGATAGAGCTAATACAAA+AGG | + | chr4_1:87769366-87769385 | None:intergenic | 30.0% | |
| ATCTTGCATCATTACTACAA+GGG | + | chr4_1:87770905-87770924 | None:intergenic | 30.0% | |
| AATCTTGCATCATTACTACA+AGG | + | chr4_1:87770906-87770925 | None:intergenic | 30.0% | |
| TCCTAAAACTAAAACTGGTT+GGG | + | chr4_1:87771459-87771478 | None:intergenic | 30.0% | |
| ATCCTAAAACTAAAACTGGT+TGG | + | chr4_1:87771460-87771479 | None:intergenic | 30.0% | |
| ACCAGTTGTTAGAAGATATA+TGG | + | chr4_1:87771613-87771632 | None:intergenic | 30.0% | |
| !! | GTACTGAATTTGTTTTCTCA+TGG | - | chr4_1:87771758-87771777 | Msa0582070:intron | 30.0% |
| GAGGAAAATAAACCAGTAAA+AGG | + | chr4_1:87771981-87772000 | None:intergenic | 30.0% | |
| GAAATGTAAAAAATCACAGG+TGG | + | chr4_1:87772085-87772104 | None:intergenic | 30.0% | |
| GCAGAAATGTAAAAAATCAC+AGG | + | chr4_1:87772088-87772107 | None:intergenic | 30.0% | |
| !!! | TTGTTGATTTTCATAGTCGA+TGG | - | chr4_1:87772170-87772189 | Msa0582070:five_prime_UTR | 30.0% |
| !!! | TCACTGGTTTTTAGTTCTGA+AGG | + | chr4_1:87768182-87768201 | None:intergenic | 35.0% |
| AGCTTGACTTCGTTTAGATT+GGG | + | chr4_1:87768368-87768387 | None:intergenic | 35.0% | |
| !! | CAAACAGGGCTTATTTCTAT+AGG | + | chr4_1:87768525-87768544 | None:intergenic | 35.0% |
| CTATAGAAATAAGCCCTGTT+TGG | - | chr4_1:87768523-87768542 | Msa0582070:intron | 35.0% | |
| ACAAGTTGTTCATCCAAACA+GGG | + | chr4_1:87768539-87768558 | None:intergenic | 35.0% | |
| AACAAGTTGTTCATCCAAAC+AGG | + | chr4_1:87768540-87768559 | None:intergenic | 35.0% | |
| AGGAACATATGTTGCATGTT+TGG | + | chr4_1:87768901-87768920 | None:intergenic | 35.0% | |
| AAACAACGGAAAGAAACTCA+TGG | - | chr4_1:87769013-87769032 | Msa0582070:intron | 35.0% | |
| TGGTTTGAATACCTGAATGA+TGG | - | chr4_1:87769338-87769357 | Msa0582070:intron | 35.0% | |
| GTGACAAATGATAAGGAGAA+TGG | + | chr4_1:87769389-87769408 | None:intergenic | 35.0% | |
| ATACAAAAATGCCATCATGC+AGG | + | chr4_1:87769621-87769640 | None:intergenic | 35.0% | |
| CACATGCATTATTACTGTTG+AGG | + | chr4_1:87769692-87769711 | None:intergenic | 35.0% | |
| ATCTAGGCAATCAAACCAAT+AGG | + | chr4_1:87769907-87769926 | None:intergenic | 35.0% | |
| !! | TAGGTGGGTTGGTTATTAAT+TGG | - | chr4_1:87770186-87770205 | Msa0582070:intron | 35.0% |
| ATCTAGCCAATCAAACCAAT+AGG | + | chr4_1:87770292-87770311 | None:intergenic | 35.0% | |
| !!! | TACAACTAGCTTTTGATTGC+TGG | - | chr4_1:87770510-87770529 | Msa0582070:intron | 35.0% |
| AATTGTCACAGCTTAAGCTT+TGG | - | chr4_1:87770745-87770764 | Msa0582070:intron | 35.0% | |
| TCTTGCATCATTACTACAAG+GGG | + | chr4_1:87770904-87770923 | None:intergenic | 35.0% | |
| TTAAGCAATAAACATCACCG+AGG | + | chr4_1:87770950-87770969 | None:intergenic | 35.0% | |
| ! | GAAATCTTTTCTTGTGGTAG+AGG | - | chr4_1:87770975-87770994 | Msa0582070:intron | 35.0% |
| AATACAAAATGCCATCATCC+AGG | + | chr4_1:87771084-87771103 | None:intergenic | 35.0% | |
| AATCCTACCCAAATTACACA+CGG | + | chr4_1:87771194-87771213 | None:intergenic | 35.0% | |
| TCTCAGCACATAACATTGAA+AGG | + | chr4_1:87771302-87771321 | None:intergenic | 35.0% | |
| !!! | TCCCAACCAGTTTTAGTTTT+AGG | - | chr4_1:87771455-87771474 | Msa0582070:CDS | 35.0% |
| GCCATATATCTTCTAACAAC+TGG | - | chr4_1:87771609-87771628 | Msa0582070:intron | 35.0% | |
| TAAGACAATTGCTGAATGCT+TGG | - | chr4_1:87771659-87771678 | Msa0582070:intron | 35.0% | |
| AATAATGGTGGTATACCTGT+TGG | + | chr4_1:87771718-87771737 | None:intergenic | 35.0% | |
| ! | CTCATGGATTTTTCCTTGTT+TGG | - | chr4_1:87771774-87771793 | Msa0582070:intron | 35.0% |
| TGTTAGCAAAGAACCAAACA+AGG | + | chr4_1:87771790-87771809 | None:intergenic | 35.0% | |
| TCCAAATGATGCTTAACGAT+TGG | + | chr4_1:87771873-87771892 | None:intergenic | 35.0% | |
| ! | ACATGGTGTAAACCTTTTAC+TGG | - | chr4_1:87771966-87771985 | Msa0582070:CDS | 35.0% |
| AATGATCCTTGAAACAGTCA+TGG | + | chr4_1:87772046-87772065 | None:intergenic | 35.0% | |
| AAAAACCAGTGAGAAGCTGA+CGG | - | chr4_1:87768190-87768209 | Msa0582070:three_prime_UTR | 40.0% | |
| AAGCTACCTTGTAGATAGTG+CGG | + | chr4_1:87768221-87768240 | None:intergenic | 40.0% | |
| GTTAACGAGAGAGATGAAGA+AGG | + | chr4_1:87768269-87768288 | None:intergenic | 40.0% | |
| TTGAATTATTCACGCAGCCA+TGG | - | chr4_1:87768307-87768326 | Msa0582070:three_prime_UTR | 40.0% | |
| GAGCTTGACTTCGTTTAGAT+TGG | + | chr4_1:87768369-87768388 | None:intergenic | 40.0% | |
| AAGTCAAGCTCTTCAACCAA+TGG | - | chr4_1:87768378-87768397 | Msa0582070:three_prime_UTR | 40.0% | |
| AGATTACCGATCTGTCTCTT+GGG | - | chr4_1:87768853-87768872 | Msa0582070:intron | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | + | chr4_1:87768972-87768991 | None:intergenic | 40.0% | |
| ACTAACTCTCTCATGATGCA+CGG | - | chr4_1:87768987-87769006 | Msa0582070:intron | 40.0% | |
| GAAAGAAACTCATGGCTGTT+AGG | - | chr4_1:87769021-87769040 | Msa0582070:intron | 40.0% | |
| TAGGATCATTAAGCATGCCA+TGG | - | chr4_1:87769040-87769059 | Msa0582070:intron | 40.0% | |
| TAGCAAGTGAATGATCTCCA+TGG | + | chr4_1:87769060-87769079 | None:intergenic | 40.0% | |
| ACCTACTTACTCATCCGAAT+CGG | - | chr4_1:87769552-87769571 | Msa0582070:intron | 40.0% | |
| ! | AACTTTTCATCCTCCCGATT+CGG | + | chr4_1:87769569-87769588 | None:intergenic | 40.0% |
| TGCAGGCAATCAAACCAATA+GGG | + | chr4_1:87769604-87769623 | None:intergenic | 40.0% | |
| ATGCAGGCAATCAAACCAAT+AGG | + | chr4_1:87769605-87769624 | None:intergenic | 40.0% | |
| ! | GAGCTGTTGATTGTTTGAAC+TGG | - | chr4_1:87769856-87769875 | Msa0582070:intron | 40.0% |
| ACTTGATAGAGAAGGATAGG+TGG | - | chr4_1:87770170-87770189 | Msa0582070:intron | 40.0% | |
| CTTGATAGAGAAGGATAGGT+GGG | - | chr4_1:87770171-87770190 | Msa0582070:intron | 40.0% | |
| ! | TGGTTTGATTGGCTAGATGA+TGG | - | chr4_1:87770294-87770313 | Msa0582070:intron | 40.0% |
| TACTTGTACGAAAGGAAAGC+AGG | - | chr4_1:87770464-87770483 | Msa0582070:intron | 40.0% | |
| !! | TAGCTTTTGATTGCTGGAAC+CGG | - | chr4_1:87770516-87770535 | Msa0582070:intron | 40.0% |
| !! | TCAATATTGGGTTGATAGCC+AGG | - | chr4_1:87770788-87770807 | Msa0582070:intron | 40.0% |
| AATACAAAAGGCCATCATCC+TGG | + | chr4_1:87770809-87770828 | None:intergenic | 40.0% | |
| TCCAGGCAATCAAACCAATA+GGG | + | chr4_1:87771067-87771086 | None:intergenic | 40.0% | |
| ATCCAGGCAATCAAACCAAT+AGG | + | chr4_1:87771068-87771087 | None:intergenic | 40.0% | |
| ATTACACACGGCATCATCTA+GGG | + | chr4_1:87771182-87771201 | None:intergenic | 40.0% | |
| AATTACACACGGCATCATCT+AGG | + | chr4_1:87771183-87771202 | None:intergenic | 40.0% | |
| AGATGATGCCGTGTGTAATT+TGG | - | chr4_1:87771183-87771202 | Msa0582070:intron | 40.0% | |
| GATGATGCCGTGTGTAATTT+GGG | - | chr4_1:87771184-87771203 | Msa0582070:intron | 40.0% | |
| TCAAAGCAAAAACTGAGGCT+TGG | - | chr4_1:87771424-87771443 | Msa0582070:CDS | 40.0% | |
| ! | ATTCTGGTTGCATCTTCTCT+AGG | + | chr4_1:87771525-87771544 | None:intergenic | 40.0% |
| AGAGAAGATGCAACCAGAAT+TGG | - | chr4_1:87771525-87771544 | Msa0582070:intron | 40.0% | |
| TGTTCCTAAATGCAGCTTCA+CGG | + | chr4_1:87771638-87771657 | None:intergenic | 40.0% | |
| CAGCTATGCGATCAAGAAAA+AGG | - | chr4_1:87771823-87771842 | Msa0582070:intron | 40.0% | |
| GCCAATCGTTAAGCATCATT+TGG | - | chr4_1:87771869-87771888 | Msa0582070:intron | 40.0% | |
| ACAAGTCAATTCAACGTGAG+AGG | + | chr4_1:87772000-87772019 | None:intergenic | 40.0% | |
| CTTAGTCCATGACTGTTTCA+AGG | - | chr4_1:87772037-87772056 | Msa0582070:intron | 40.0% | |
| TCAGCTTGGAAAACTGGTAT+TGG | + | chr4_1:87772133-87772152 | None:intergenic | 40.0% | |
| AATACTTCAACACGTCAGCT+TGG | + | chr4_1:87772147-87772166 | None:intergenic | 40.0% | |
| AAGGCAAAGCAAGAGTGACA+GGG | + | chr4_1:87768163-87768182 | None:intergenic | 45.0% | |
| GATTGGGATCAACTTCGACT+GGG | + | chr4_1:87768352-87768371 | None:intergenic | 45.0% | |
| AGATTGGGATCAACTTCGAC+TGG | + | chr4_1:87768353-87768372 | None:intergenic | 45.0% | |
| CAAGAGACAGATCGGTAATC+TGG | + | chr4_1:87768854-87768873 | None:intergenic | 45.0% | |
| CAGATTACCGATCTGTCTCT+TGG | - | chr4_1:87768852-87768871 | Msa0582070:intron | 45.0% | |
| GATTACCGATCTGTCTCTTG+GGG | - | chr4_1:87768854-87768873 | Msa0582070:intron | 45.0% | |
| GTAATCCCCAAGAGACAGAT+CGG | + | chr4_1:87768862-87768881 | None:intergenic | 45.0% | |
| CTGTCTCTTGGGGATTACAT+TGG | - | chr4_1:87768864-87768883 | Msa0582070:intron | 45.0% | |
| ACATATGTTCCTCACACTGC+TGG | - | chr4_1:87768909-87768928 | Msa0582070:intron | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | + | chr4_1:87768973-87768992 | None:intergenic | 45.0% | |
| ATGATGCACGGCAGAAACAA+CGG | - | chr4_1:87768999-87769018 | Msa0582070:intron | 45.0% | |
| ! | TAGTTGATGCTGTCGTCAAC+AGG | - | chr4_1:87769105-87769124 | Msa0582070:intron | 45.0% |
| CCTACTTACTCATCCGAATC+GGG | - | chr4_1:87769553-87769572 | Msa0582070:intron | 45.0% | |
| TGGTTTGATTGCCTGCATGA+TGG | - | chr4_1:87769607-87769626 | Msa0582070:intron | 45.0% | |
| GCTCTATCTGATCATTCTCC+TGG | - | chr4_1:87769643-87769662 | Msa0582070:intron | 45.0% | |
| ATAGAGAAGGATAGGTGGGT+TGG | - | chr4_1:87770175-87770194 | Msa0582070:intron | 45.0% | |
| TAAGATTGGGGGCTGTTGAT+TGG | - | chr4_1:87770232-87770251 | Msa0582070:intron | 45.0% | |
| !! | TCCCTATTGGTTTGATTGCC+TGG | - | chr4_1:87769600-87769619 | Msa0582070:intron | 45.0% |
| TGGTTTGATTGCCTGGATGA+TGG | - | chr4_1:87771070-87771089 | Msa0582070:intron | 45.0% | |
| ATGCCGTGTGTAATTTGGGT+AGG | - | chr4_1:87771188-87771207 | Msa0582070:intron | 45.0% | |
| AACTCCAGCAGATCCAATTC+TGG | + | chr4_1:87771541-87771560 | None:intergenic | 45.0% | |
| TTGGATCTGCTGGAGTTGTT+AGG | - | chr4_1:87771544-87771563 | Msa0582070:intron | 45.0% | |
| TCCTCTTCGTCGTGTTAATC+AGG | - | chr4_1:87771587-87771606 | Msa0582070:intron | 45.0% | |
| GTTCCTAAATGCAGCTTCAC+GGG | + | chr4_1:87771637-87771656 | None:intergenic | 45.0% | |
| TGAACTCATTAACGCTGCCA+AGG | - | chr4_1:87771686-87771705 | Msa0582070:intron | 45.0% | |
| GAACTCATTAACGCTGCCAA+GGG | - | chr4_1:87771687-87771706 | Msa0582070:intron | 45.0% | |
| ATACCTGTTGGATGAACCCT+TGG | + | chr4_1:87771706-87771725 | None:intergenic | 45.0% | |
| TGAGATTGAGAGAGTTGCCA+AGG | - | chr4_1:87771847-87771866 | Msa0582070:intron | 45.0% | |
| !! | TGATGCTTAACGATTGGCCT+TGG | + | chr4_1:87771867-87771886 | None:intergenic | 45.0% |
| AACACGTCAGCTTGGAAAAC+TGG | + | chr4_1:87772139-87772158 | None:intergenic | 45.0% | |
| GAAGGCAAAGCAAGAGTGAC+AGG | + | chr4_1:87768164-87768183 | None:intergenic | 50.0% | |
| AACTTCGACTGGGATAGCGA+CGG | + | chr4_1:87768342-87768361 | None:intergenic | 50.0% | |
| GAACGTCGTCAAAGCTCCAT+TGG | + | chr4_1:87768397-87768416 | None:intergenic | 50.0% | |
| ! | ATGGAGCTTTGACGACGTTC+AGG | - | chr4_1:87768397-87768416 | Msa0582070:three_prime_UTR | 50.0% |
| GGGGATTACATTGGAGCAAG+AGG | - | chr4_1:87768873-87768892 | Msa0582070:intron | 50.0% | |
| ATGTTCCTCACACTGCTGGT+AGG | - | chr4_1:87768913-87768932 | Msa0582070:intron | 50.0% | |
| !! | GGTACTCAAAGAAGCGCTTC+AGG | - | chr4_1:87768934-87768953 | Msa0582070:intron | 50.0% |
| CTCAGTGTCCCATTGTTGAG+AGG | - | chr4_1:87768961-87768980 | Msa0582070:intron | 50.0% | |
| !! | CCCGATTCGGATGAGTAAGT+AGG | + | chr4_1:87769556-87769575 | None:intergenic | 50.0% |
| ACTTACTCATCCGAATCGGG+AGG | - | chr4_1:87769556-87769575 | Msa0582070:intron | 50.0% | |
| ! | ATTGGGGGCTGTTGATTGGT+TGG | - | chr4_1:87770236-87770255 | Msa0582070:intron | 50.0% |
| !! | TGGGTTGATAGCCAGGATGA+TGG | - | chr4_1:87770795-87770814 | Msa0582070:intron | 50.0% |
| GCAACCAGAATTGGATCTGC+TGG | - | chr4_1:87771534-87771553 | Msa0582070:intron | 50.0% | |
| GATCTGCTGGAGTTGTTAGG+AGG | - | chr4_1:87771547-87771566 | Msa0582070:intron | 50.0% | |
| GCCTGATTAACACGACGAAG+AGG | + | chr4_1:87771591-87771610 | None:intergenic | 50.0% | |
| ACCTTGTAGATAGTGCGGCG+CGG | + | chr4_1:87768216-87768235 | None:intergenic | 55.0% | |
| AGCGACGGTTTCATCAGCCA+TGG | + | chr4_1:87768327-87768346 | None:intergenic | 55.0% | |
| GAGTACCTACCAGCAGTGTG+AGG | + | chr4_1:87768921-87768940 | None:intergenic | 55.0% | |
| TGCTGGAGTTGTTAGGAGGC+AGG | - | chr4_1:87771551-87771570 | Msa0582070:intron | 55.0% | |
| AGTTGTTAGGAGGCAGGCTG+TGG | - | chr4_1:87771557-87771576 | Msa0582070:intron | 55.0% | |
| GTGCCCGTGAAGCTGCATTT+AGG | - | chr4_1:87771631-87771650 | Msa0582070:intron | 55.0% | |
| CTGCCAAGGGTTCATCCAAC+AGG | - | chr4_1:87771700-87771719 | Msa0582070:intron | 55.0% | |
| GCCGCGCCGCACTATCTACA+AGG | - | chr4_1:87768212-87768231 | Msa0582070:three_prime_UTR | 65.0% | |
| CGCGGCCGTCAGCTTCTCAC+TGG | + | chr4_1:87768198-87768217 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 87768145 | 87772209 | 87768145 | ID=Msa0582070;Name=Msa0582070 |
| chr4_1 | mRNA | 87768145 | 87772209 | 87768145 | ID=Msa0582070-mRNA-1;Parent=Msa0582070;Name=Msa0582070-mRNA-1;_AED=0.13;_eAED=0.13;_QI=91|1|1|1|0.75|0.6|5|329|207 |
| chr4_1 | exon | 87768145 | 87768528 | 87768145 | ID=Msa0582070-mRNA-1:exon:32646;Parent=Msa0582070-mRNA-1 |
| chr4_1 | exon | 87768633 | 87768836 | 87768633 | ID=Msa0582070-mRNA-1:exon:32645;Parent=Msa0582070-mRNA-1 |
| chr4_1 | exon | 87771228 | 87771499 | 87771228 | ID=Msa0582070-mRNA-1:exon:32644;Parent=Msa0582070-mRNA-1 |
| chr4_1 | exon | 87771936 | 87772030 | 87771936 | ID=Msa0582070-mRNA-1:exon:32643;Parent=Msa0582070-mRNA-1 |
| chr4_1 | exon | 87772121 | 87772209 | 87772121 | ID=Msa0582070-mRNA-1:exon:32642;Parent=Msa0582070-mRNA-1 |
| chr4_1 | five_prime_UTR | 87772121 | 87772209 | 87772121 | ID=Msa0582070-mRNA-1:five_prime_utr;Parent=Msa0582070-mRNA-1 |
| chr4_1 | five_prime_UTR | 87772029 | 87772030 | 87772029 | ID=Msa0582070-mRNA-1:five_prime_utr;Parent=Msa0582070-mRNA-1 |
| chr4_1 | CDS | 87771936 | 87772028 | 87771936 | ID=Msa0582070-mRNA-1:cds;Parent=Msa0582070-mRNA-1 |
| chr4_1 | CDS | 87771228 | 87771499 | 87771228 | ID=Msa0582070-mRNA-1:cds;Parent=Msa0582070-mRNA-1 |
| chr4_1 | CDS | 87768633 | 87768836 | 87768633 | ID=Msa0582070-mRNA-1:cds;Parent=Msa0582070-mRNA-1 |
| chr4_1 | CDS | 87768474 | 87768528 | 87768474 | ID=Msa0582070-mRNA-1:cds;Parent=Msa0582070-mRNA-1 |
| chr4_1 | three_prime_UTR | 87768145 | 87768473 | 87768145 | ID=Msa0582070-mRNA-1:three_prime_utr;Parent=Msa0582070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
