AlfalfaGEDB | Msa0783180

M. sativa cultivar zhongmu-4 / Msa0783180

KEGG: K09286
GO: -
PFAM: PF00847.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0783180	XP_003616861.1	84.512	297	33	3	1	297	1	284	4.04e-132	386

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0783180	sp\|O80339\|ERF82_ARATH	46.857	175	75	5	23	191	2	164	4.79e-33	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0783180	G7KH76	84.512	297	33	3	1	297	1	284	1.93e-132	386

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TFs/TRs:

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Gene ID	Type	Classification
Msa0783180	TF	AP2/ERF-ERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003280	Msa0783180	0.807061	6.074817e-50	-8.615850e-47
Msa0267870	Msa0783180	0.800513	1.391145e-48	-8.615850e-47
Msa0403190	Msa0783180	0.810641	1.042126e-50	-8.615850e-47
Msa0505150	Msa0783180	0.804899	1.730778e-49	-8.615850e-47
Msa0560470	Msa0783180	0.808633	2.813882e-50	-8.615850e-47
Msa0639120	Msa0783180	0.801066	1.072788e-48	-8.615850e-47
Msa0783180	Msa1184370	0.808329	3.267112e-50	-8.615850e-47
Msa0783180	Msa1397940	0.803150	3.998793e-49	-8.615850e-47
Msa0783180	Msa1438640	0.803848	2.865816e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0783180	MtrunA17_Chr5g0438801	84.512	297	33	3	1	297	1	284	3.72e-136	386
Msa0783180	MtrunA17_Chr5g0438831	78.788	297	40	5	1	287	1	284	7.71e-119	342
Msa0783180	MtrunA17_Chr3g0099871	54.967	151	46	5	27	172	6	139	8.41e-37	130
Msa0783180	MtrunA17_Chr2g0316931	63.830	94	34	0	39	132	17	110	1.38e-35	127
Msa0783180	MtrunA17_Chr5g0438851	39.370	254	58	7	46	297	11	170	1.36e-33	121
Msa0783180	MtrunA17_Chr2g0282621	73.529	68	18	0	42	109	4	71	2.42e-29	110
Msa0783180	MtrunA17_Chr2g0282651	69.444	72	22	0	40	111	57	128	4.41e-29	111
Msa0783180	MtrunA17_Chr8g0367911	72.581	62	17	0	51	112	42	103	3.87e-26	104
Msa0783180	MtrunA17_Chr7g0221471	52.688	93	42	1	17	109	17	107	2.61e-25	99.4
Msa0783180	MtrunA17_Chr7g0221501	52.688	93	42	1	17	109	17	107	4.14e-25	99.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0783180	AT1G50640.1	46.857	175	75	5	23	191	2	164	4.86e-34	124
Msa0783180	AT5G44210.1	69.231	78	24	0	34	111	14	91	2.26e-32	119
Msa0783180	AT3G15210.1	85.246	61	9	0	49	109	21	81	5.69e-31	115
Msa0783180	AT1G03800.1	74.194	62	16	0	49	110	49	110	3.19e-29	112
Msa0783180	AT1G28360.1	73.134	67	18	0	45	111	4	70	6.02e-29	109
Msa0783180	AT1G28370.2	72.857	70	14	1	45	109	45	114	7.55e-29	110
Msa0783180	AT1G28370.1	72.857	70	14	1	45	109	7	76	7.84e-29	108
Msa0783180	AT3G20310.1	52.143	140	56	3	46	175	20	158	4.07e-28	108
Msa0783180	AT1G12980.1	47.748	111	52	1	32	136	36	146	2.28e-25	103
Msa0783180	AT2G33710.1	61.728	81	25	2	38	114	51	129	1.88e-24	98.6

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Find 119 sgRNAs with CRISPR-Local

Find 678 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCTCTTCAGCAGAT+TGG	0.473126	5_2:-67015488	None:intergenic
AAAGCATGAGCCTGGGCAAG+AGG	0.495492	5_2:-67015305	None:intergenic
AAATCCGTTACCGCGGCGTA+CGG	0.542793	5_2:+67014721	Msa0783180:CDS
AACAGTACTACTCATACCGC+TGG	0.578856	5_2:-67015045	None:intergenic
AAGAAAACCCGGGTCTGGTT+GGG	0.456679	5_2:+67014789	Msa0783180:CDS
AAGTTGATAATCAACTTGGA+TGG	0.585254	5_2:+67015705	Msa0783180:three_prime_UTR
ACCACCAACAGCAGGAACCC+TGG	0.562050	5_2:-67015129	None:intergenic
ACCTGAGCCGGAGCATGAAC+CGG	0.419444	5_2:-67015338	None:intergenic
ACCTGTGCCTGAACCTGAGC+CGG	0.490907	5_2:-67015368	None:intergenic
ACGGATTTCTTTAACCGCCG+CGG	0.705760	5_2:-67014706	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATAACAAACCAATATGCAG+TGG	+	chr5_2:67005387-67005406	Msa0783180:intron	30.0%
ATAACAAACCAATATGCAGT+GGG	+	chr5_2:67005388-67005407	Msa0783180:intron	30.0%
AATGCAAGGGTAAAAATCAT+AGG	+	chr5_2:67005554-67005573	Msa0783180:intron	30.0%
AAGTCTGAGCAAAGATATAT+TGG	-	chr5_2:67005716-67005735	None:intergenic	30.0%
CATATTATATTAGGGTTGTC+AGG	-	chr5_2:67005940-67005959	None:intergenic	30.0%
GTATTGAAAAATAGGGCATA+TGG	+	chr5_2:67006117-67006136	Msa0783180:intron	30.0%
TTATGTTACGTGATAAGTGA+AGG	+	chr5_2:67006149-67006168	Msa0783180:intron	30.0%
AAGTGAAGGATGATTTAGAA+TGG	+	chr5_2:67006163-67006182	Msa0783180:intron	30.0%
GCAACAAAACCAAATCTAAA+AGG	-	chr5_2:67006976-67006995	None:intergenic	30.0%
AATTGGTTGAAGAAGATGAA+GGG	-	chr5_2:67007441-67007460	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	67004534	67015874	67004534	ID=Msa0783180;Name=Msa0783180
chr5_2	mRNA	67004534	67015874	67004534	ID=Msa0783180-mRNA-1;Parent=Msa0783180;Name=Msa0783180-mRNA-1;_AED=0.19;_eAED=0.19;_QI=156\|0.5\|0.66\|1\|0\|0.33\|3\|408\|297
chr5_2	exon	67004534	67004561	67004534	ID=Msa0783180-mRNA-1:exon:20115;Parent=Msa0783180-mRNA-1
chr5_2	exon	67014335	67014462	67014335	ID=Msa0783180-mRNA-1:exon:20116;Parent=Msa0783180-mRNA-1
chr5_2	exon	67014573	67015874	67014573	ID=Msa0783180-mRNA-1:exon:20117;Parent=Msa0783180-mRNA-1
chr5_2	five_prime_UTR	67004534	67004561	67004534	ID=Msa0783180-mRNA-1:five_prime_utr;Parent=Msa0783180-mRNA-1
chr5_2	five_prime_UTR	67014335	67014462	67014335	ID=Msa0783180-mRNA-1:five_prime_utr;Parent=Msa0783180-mRNA-1
chr5_2	CDS	67014573	67015466	67014573	ID=Msa0783180-mRNA-1:cds;Parent=Msa0783180-mRNA-1
chr5_2	three_prime_UTR	67015467	67015874	67015467	ID=Msa0783180-mRNA-1:three_prime_utr;Parent=Msa0783180-mRNA-1

Gene Sequence

>Msa0783180

ATGGTTCGAGTGAAAGGAAGAGATTACATGCCGAGAAAAAAAATTGTAAATTTACCAGTGGTTGCTCGCTACGCCGCGGGATCTACGGCGGTGAGAAAATCAGAAGCGGCAGACCCGATGAAGAGCTCTGTTACCGCGGCGGTTAAAGAAATCCGTTACCGCGGCGTACGGAAGCGACCATGGGGTCGATTCGCTGCTGAGATTAGAGATCCCTGGAAGAAAACCCGGGTCTGGTTGGGAACTTATGATACGGCTGAGCAAGCCGCACAAGCATATGATACAGCCGCGATTAAATTTCGCGCTTCGAAGGCGAAAACTAATTTCCCTATTCCTGAACATATCCTTGCGGCCGCGGCTGAGACAGCAGCCGCGGCCGCTCAAAATCCTCAGCCTCCGGTTGCTGTTGATAACCGTCGGGCTGAGGTTTTGAAATTTGTTGAGCCTGAGGTTGTTCAGGTTAATTGGCCTACTTCCAGCGGTATGAGTAGTACTGTTGAGTCTTTTAGTGGGCCTAGGATTGTTCAGGTTGTTGGTTCTTCGTCTTCTTCTGCTGTTTCCAGGGTTCCTGCTGTTGGTGGTGCTGGTAGCGGAGTTGCTCAAGTTGTTGGTGCTGTTGGTGTTGGTGCTCATGGTGGTGAAGATTTTCACAGTGGCTGTGATTCATCTTCATCTGTTATTGATGATGACGAAGATTGTGTTATTCTCAGTTCTTCTGCTGCTTCAGTGAGGAAGCCTCTTGCCCAGGCTCATGCTTTGGCCCAGGCTCCGGTTCATGCTCCGGCTCAGGTTCAGCCTCCGGCTCAGGTTCAGGCACAGGTGTTTGCTATTGATCTGAATTTACCTCCTCCTATGGATGATGAAGAAGTGATCCGCGTCACTACCCTGTGTCTCTGA

Protein sequence

>Msa0783180

MVRVKGRDYMPRKKIVNLPVVARYAAGSTAVRKSEAADPMKSSVTAAVKEIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTYDTAEQAAQAYDTAAIKFRASKAKTNFPIPEHILAAAAETAAAAAQNPQPPVAVDNRRAEVLKFVEPEVVQVNWPTSSGMSSTVESFSGPRIVQVVGSSSSSAVSRVPAVGGAGSGVAQVVGAVGVGAHGGEDFHSGCDSSSSVIDDDEDCVILSSSAASVRKPLAQAHALAQAPVHAPAQVQPPAQVQAQVFAIDLNLPPPMDDEEVIRVTTLCL*