AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1397940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397940 MtrunA17_Chr3g0084311 87.059 85 11 0 1 85 1 85 1.93e-50 154
Msa1397940 MtrunA17_Chr3g0084301 87.059 85 11 0 1 85 1 85 1.93e-50 154
Msa1397940 MtrunA17_Chr8g0364261 96.000 75 3 0 1 75 1 75 1.95e-50 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397940 AT4G14342.1 86.667 75 10 0 1 75 1 75 9.78e-47 145
Msa1397940 AT4G14342.2 86.667 75 10 0 1 75 1 75 1.46e-46 145
Msa1397940 AT3G23325.1 76.744 86 20 0 1 86 1 86 4.39e-46 143

Find 30 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGAGAATTGGGGCTTTC+AGG 0.173040 tig0022216:-55020 Msa1397940:CDS
CAAGCGATTTAAGAGAGAAT+TGG 0.327895 tig0022216:-55030 Msa1397940:CDS
AAGCGATTTAAGAGAGAATT+GGG 0.344620 tig0022216:-55029 Msa1397940:CDS
AGAATTGGGGCTTTCAGGTT+AGG 0.385146 tig0022216:-55015 Msa1397940:CDS
TTGCGTTGCAGGCGAGTGAT+AGG 0.389437 tig0022216:-56083 Msa1397940:intron
GTTACTTAGTTTATAAAAGA+AGG 0.394264 tig0022216:-56299 Msa1397940:five_prime_UTR
TAGAAAAGTAAGAAAGTAAA+GGG 0.419141 tig0022216:+55932 None:intergenic
ATCGCTCAAAACGAATCTAT+TGG 0.432806 tig0022216:-55910 Msa1397940:CDS
CGCGAGTAGAGTAGGGTTTG+AGG 0.433467 tig0022216:-56227 Msa1397940:five_prime_UTR
AAATCATAGGAAACGATTAG+AGG 0.452612 tig0022216:-55061 Msa1397940:intron
ATAGAAAAGTAAGAAAGTAA+AGG 0.454525 tig0022216:+55931 None:intergenic
CAAGCTAAATACGTTGGAAC+TGG 0.455380 tig0022216:-56030 Msa1397940:CDS
CTGATATCAACAGATTTGAA+TGG 0.473717 tig0022216:-56002 Msa1397940:CDS
AGCTTGAAGATGCTCAAGTT+GGG 0.482407 tig0022216:+56047 None:intergenic
TAGCTTGAAGATGCTCAAGT+TGG 0.503852 tig0022216:+56046 None:intergenic
GCGAGTAGAGTAGGGTTTGA+GGG 0.518608 tig0022216:-56226 Msa1397940:five_prime_UTR
GCAAAGACGCGAGTAGAGTA+GGG 0.519914 tig0022216:-56234 Msa1397940:five_prime_UTR
AATCATAGGAAACGATTAGA+GGG 0.530362 tig0022216:-55060 Msa1397940:intron
AAGAGTTGAGACATTAACAT+TGG 0.532317 tig0022216:-56258 Msa1397940:five_prime_UTR
AGAACGATGAAGAACTTTCA+AGG 0.532477 tig0022216:+54981 None:intergenic
TTAGTTTATAAAAGAAGGAT+CGG 0.533235 tig0022216:-56294 Msa1397940:five_prime_UTR
AGCAAAGACGCGAGTAGAGT+AGG 0.534461 tig0022216:-56235 Msa1397940:five_prime_UTR
GATAGCTATGCTTCATACAT+TGG 0.535916 tig0022216:-55961 Msa1397940:CDS
TGATATCAACAGATTTGAAT+GGG 0.559675 tig0022216:-56001 Msa1397940:CDS
CATCTTCAAGCTAAATACGT+TGG 0.583881 tig0022216:-56036 Msa1397940:CDS
ATAAACGAGAGGCAATATGC+AGG 0.585212 tig0022216:-56189 Msa1397940:intron
GTTTATAAAAGAAGGATCGG+TGG 0.621285 tig0022216:-56291 Msa1397940:five_prime_UTR
AAGAAAAGAAAATAAACGAG+AGG 0.622646 tig0022216:-56200 Msa1397940:five_prime_UTR
GGGATATGACTCGATTACAA+AGG 0.643127 tig0022216:+54956 None:intergenic
AGCGATTTAAGAGAGAATTG+GGG 0.690564 tig0022216:-55028 Msa1397940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACAAAATTACTTGTTAAT+TGG - tig0022216:55457-55476 Msa1397940:intron 15.0%
!!! AAACAAAATTACTTGTTAAT+TGG - tig0022216:55457-55476 Msa1397940:intron 15.0%
!! TTAGTTTATAAAAGAAGGAT+CGG - tig0022216:54972-54991 Msa1397940:CDS 20.0%
!! TAGAAAAGTAAGAAAGTAAA+GGG + tig0022216:55337-55356 None:intergenic 20.0%
!! ATAGAAAAGTAAGAAAGTAA+AGG + tig0022216:55338-55357 None:intergenic 20.0%
!!! TTCCTATGATTTTTAAATCA+CGG + tig0022216:56197-56216 None:intergenic 20.0%
!! TTAGTTTATAAAAGAAGGAT+CGG - tig0022216:54972-54991 Msa1397940:CDS 20.0%
!! TAGAAAAGTAAGAAAGTAAA+GGG + tig0022216:55337-55356 None:intergenic 20.0%
!! ATAGAAAAGTAAGAAAGTAA+AGG + tig0022216:55338-55357 None:intergenic 20.0%
!!! TTCCTATGATTTTTAAATCA+CGG + tig0022216:56197-56216 None:intergenic 20.0%
! AAGAAAAGAAAATAAACGAG+AGG - tig0022216:55066-55085 Msa1397940:intron 25.0%
! TTAACGAAATCATGAAACTA+CGG - tig0022216:55148-55167 Msa1397940:intron 25.0%
! TGATATCAACAGATTTGAAT+GGG - tig0022216:55265-55284 Msa1397940:intron 25.0%
!!! ATTCCATGTTTTTTGTTTTG+AGG - tig0022216:55419-55438 Msa1397940:intron 25.0%
!!! TGTGTTTTTTATACTGTTAG+TGG - tig0022216:55500-55519 Msa1397940:intron 25.0%
! CTCAAAGTGAAATATCTAAA+AGG + tig0022216:55701-55720 None:intergenic 25.0%
!! CTTTTAGATATTTCACTTTG+AGG - tig0022216:55699-55718 Msa1397940:intron 25.0%
! AATAGAATAATGATGTTGAG+TGG - tig0022216:55723-55742 Msa1397940:intron 25.0%
!!! TCAAACTTTGGTTTGTTATT+TGG - tig0022216:56143-56162 Msa1397940:intron 25.0%
!!! TTTGGTTTGTTATTTGGAAA+TGG - tig0022216:56149-56168 Msa1397940:intron 25.0%
! AACCGTGATTTAAAAATCAT+AGG - tig0022216:56192-56211 Msa1397940:exon 25.0%
! AAGAAAAGAAAATAAACGAG+AGG - tig0022216:55066-55085 Msa1397940:intron 25.0%
! TTAACGAAATCATGAAACTA+CGG - tig0022216:55148-55167 Msa1397940:intron 25.0%
! TGATATCAACAGATTTGAAT+GGG - tig0022216:55265-55284 Msa1397940:intron 25.0%
!!! ATTCCATGTTTTTTGTTTTG+AGG - tig0022216:55419-55438 Msa1397940:intron 25.0%
!!! TGTGTTTTTTATACTGTTAG+TGG - tig0022216:55500-55519 Msa1397940:intron 25.0%
! CTCAAAGTGAAATATCTAAA+AGG + tig0022216:55701-55720 None:intergenic 25.0%
!! CTTTTAGATATTTCACTTTG+AGG - tig0022216:55699-55718 Msa1397940:intron 25.0%
! AATAGAATAATGATGTTGAG+TGG - tig0022216:55723-55742 Msa1397940:intron 25.0%
!!! TCAAACTTTGGTTTGTTATT+TGG - tig0022216:56143-56162 Msa1397940:intron 25.0%
!!! TTTGGTTTGTTATTTGGAAA+TGG - tig0022216:56149-56168 Msa1397940:intron 25.0%
! AACCGTGATTTAAAAATCAT+AGG - tig0022216:56192-56211 Msa1397940:exon 25.0%
AAGAGTTGAGACATTAACAT+TGG - tig0022216:55008-55027 Msa1397940:CDS 30.0%
CTGATATCAACAGATTTGAA+TGG - tig0022216:55264-55283 Msa1397940:intron 30.0%
ACACCTCAAAACAAAAAACA+TGG + tig0022216:55425-55444 None:intergenic 30.0%
AAATGTTAGTACCACAGATT+AGG - tig0022216:55529-55548 Msa1397940:intron 30.0%
!! ATTTGTTTCTAAATTGACCG+GGG + tig0022216:55609-55628 None:intergenic 30.0%
!! GATTTGTTTCTAAATTGACC+GGG + tig0022216:55610-55629 None:intergenic 30.0%
!! GGATTTGTTTCTAAATTGAC+CGG + tig0022216:55611-55630 None:intergenic 30.0%
CTATATAGTAGGTTAACAAC+AGG + tig0022216:55632-55651 None:intergenic 30.0%
TTGTTAACCTACTATATAGC+CGG - tig0022216:55633-55652 Msa1397940:intron 30.0%
AAACATATCTATGAATACGC+AGG - tig0022216:55815-55834 Msa1397940:intron 30.0%
GAGTATTAGTACTCAAACTT+TGG - tig0022216:56131-56150 Msa1397940:intron 30.0%
AAATCATAGGAAACGATTAG+AGG - tig0022216:56205-56224 Msa1397940:five_prime_UTR 30.0%
AATCATAGGAAACGATTAGA+GGG - tig0022216:56206-56225 Msa1397940:five_prime_UTR 30.0%
AAGCGATTTAAGAGAGAATT+GGG - tig0022216:56237-56256 Msa1397940:five_prime_UTR 30.0%
AAGAGTTGAGACATTAACAT+TGG - tig0022216:55008-55027 Msa1397940:CDS 30.0%
CTGATATCAACAGATTTGAA+TGG - tig0022216:55264-55283 Msa1397940:intron 30.0%
ACACCTCAAAACAAAAAACA+TGG + tig0022216:55425-55444 None:intergenic 30.0%
AAATGTTAGTACCACAGATT+AGG - tig0022216:55529-55548 Msa1397940:intron 30.0%
!! ATTTGTTTCTAAATTGACCG+GGG + tig0022216:55609-55628 None:intergenic 30.0%
!! GATTTGTTTCTAAATTGACC+GGG + tig0022216:55610-55629 None:intergenic 30.0%
!! GGATTTGTTTCTAAATTGAC+CGG + tig0022216:55611-55630 None:intergenic 30.0%
CTATATAGTAGGTTAACAAC+AGG + tig0022216:55632-55651 None:intergenic 30.0%
TTGTTAACCTACTATATAGC+CGG - tig0022216:55633-55652 Msa1397940:intron 30.0%
AAACATATCTATGAATACGC+AGG - tig0022216:55815-55834 Msa1397940:intron 30.0%
GAGTATTAGTACTCAAACTT+TGG - tig0022216:56131-56150 Msa1397940:intron 30.0%
AAATCATAGGAAACGATTAG+AGG - tig0022216:56205-56224 Msa1397940:five_prime_UTR 30.0%
AATCATAGGAAACGATTAGA+GGG - tig0022216:56206-56225 Msa1397940:five_prime_UTR 30.0%
AAGCGATTTAAGAGAGAATT+GGG - tig0022216:56237-56256 Msa1397940:five_prime_UTR 30.0%
GTTTATAAAAGAAGGATCGG+TGG - tig0022216:54975-54994 Msa1397940:CDS 35.0%
CATCTTCAAGCTAAATACGT+TGG - tig0022216:55230-55249 Msa1397940:intron 35.0%
GATAGCTATGCTTCATACAT+TGG - tig0022216:55305-55324 Msa1397940:intron 35.0%
ATCGCTCAAAACGAATCTAT+TGG - tig0022216:55356-55375 Msa1397940:intron 35.0%
! ACAGCGTTATACTTTTATGC+AGG - tig0022216:55382-55401 Msa1397940:intron 35.0%
TAATTGACCGGCTATATAGT+AGG + tig0022216:55643-55662 None:intergenic 35.0%
CCAAGTTACTTATCTCACTA+AGG + tig0022216:55865-55884 None:intergenic 35.0%
CCTTAGTGAGATAAGTAACT+TGG - tig0022216:55862-55881 Msa1397940:intron 35.0%
GTGAGATAAGTAACTTGGTT+AGG - tig0022216:55867-55886 Msa1397940:intron 35.0%
TGTTGTTAGTAGTACTGCTA+TGG - tig0022216:55999-56018 Msa1397940:CDS 35.0%
CAAGCGATTTAAGAGAGAAT+TGG - tig0022216:56236-56255 Msa1397940:five_prime_UTR 35.0%
AGCGATTTAAGAGAGAATTG+GGG - tig0022216:56238-56257 Msa1397940:five_prime_UTR 35.0%
AGAACGATGAAGAACTTTCA+AGG + tig0022216:56288-56307 None:intergenic 35.0%
GTTTATAAAAGAAGGATCGG+TGG - tig0022216:54975-54994 Msa1397940:CDS 35.0%
CATCTTCAAGCTAAATACGT+TGG - tig0022216:55230-55249 Msa1397940:intron 35.0%
GATAGCTATGCTTCATACAT+TGG - tig0022216:55305-55324 Msa1397940:intron 35.0%
ATCGCTCAAAACGAATCTAT+TGG - tig0022216:55356-55375 Msa1397940:intron 35.0%
! ACAGCGTTATACTTTTATGC+AGG - tig0022216:55382-55401 Msa1397940:intron 35.0%
TAATTGACCGGCTATATAGT+AGG + tig0022216:55643-55662 None:intergenic 35.0%
CCAAGTTACTTATCTCACTA+AGG + tig0022216:55865-55884 None:intergenic 35.0%
CCTTAGTGAGATAAGTAACT+TGG - tig0022216:55862-55881 Msa1397940:intron 35.0%
GTGAGATAAGTAACTTGGTT+AGG - tig0022216:55867-55886 Msa1397940:intron 35.0%
TGTTGTTAGTAGTACTGCTA+TGG - tig0022216:55999-56018 Msa1397940:CDS 35.0%
CAAGCGATTTAAGAGAGAAT+TGG - tig0022216:56236-56255 Msa1397940:five_prime_UTR 35.0%
AGCGATTTAAGAGAGAATTG+GGG - tig0022216:56238-56257 Msa1397940:five_prime_UTR 35.0%
AGAACGATGAAGAACTTTCA+AGG + tig0022216:56288-56307 None:intergenic 35.0%
ATAAACGAGAGGCAATATGC+AGG - tig0022216:55077-55096 Msa1397940:intron 40.0%
AGCTTGAAGATGCTCAAGTT+GGG + tig0022216:55222-55241 None:intergenic 40.0%
TAGCTTGAAGATGCTCAAGT+TGG + tig0022216:55223-55242 None:intergenic 40.0%
CAAGCTAAATACGTTGGAAC+TGG - tig0022216:55236-55255 Msa1397940:intron 40.0%
TACCACAGATTAGGTTACCA+TGG - tig0022216:55538-55557 Msa1397940:intron 40.0%
TTCCATGGTAACCTAATCTG+TGG + tig0022216:55543-55562 None:intergenic 40.0%
AGATTAGGTTACCATGGAAG+AGG - tig0022216:55544-55563 Msa1397940:intron 40.0%
CTATATAGCCGGTCAATTAG+TGG - tig0022216:55644-55663 Msa1397940:intron 40.0%
CTAGTACACCACTAATTGAC+CGG + tig0022216:55655-55674 None:intergenic 40.0%
GTGGATAGTATTCTCTCTCA+TGG - tig0022216:55742-55761 Msa1397940:intron 40.0%
AGCAGTACTACTAACAACAC+AGG + tig0022216:55998-56017 None:intergenic 40.0%
ACAAGAAAATGCACTGCAAC+AGG + tig0022216:56077-56096 None:intergenic 40.0%
!! TGCAATTTGTTGCCGCAAAT+AGG - tig0022216:56099-56118 Msa1397940:intron 40.0%
ATAAACGAGAGGCAATATGC+AGG - tig0022216:55077-55096 Msa1397940:intron 40.0%
AGCTTGAAGATGCTCAAGTT+GGG + tig0022216:55222-55241 None:intergenic 40.0%
TAGCTTGAAGATGCTCAAGT+TGG + tig0022216:55223-55242 None:intergenic 40.0%
CAAGCTAAATACGTTGGAAC+TGG - tig0022216:55236-55255 Msa1397940:intron 40.0%
TACCACAGATTAGGTTACCA+TGG - tig0022216:55538-55557 Msa1397940:intron 40.0%
TTCCATGGTAACCTAATCTG+TGG + tig0022216:55543-55562 None:intergenic 40.0%
AGATTAGGTTACCATGGAAG+AGG - tig0022216:55544-55563 Msa1397940:intron 40.0%
CTATATAGCCGGTCAATTAG+TGG - tig0022216:55644-55663 Msa1397940:intron 40.0%
CTAGTACACCACTAATTGAC+CGG + tig0022216:55655-55674 None:intergenic 40.0%
GTGGATAGTATTCTCTCTCA+TGG - tig0022216:55742-55761 Msa1397940:intron 40.0%
AGCAGTACTACTAACAACAC+AGG + tig0022216:55998-56017 None:intergenic 40.0%
ACAAGAAAATGCACTGCAAC+AGG + tig0022216:56077-56096 None:intergenic 40.0%
!! TGCAATTTGTTGCCGCAAAT+AGG - tig0022216:56099-56118 Msa1397940:intron 40.0%
AGGACTCGACACAATTGGAA+GGG - tig0022216:55564-55583 Msa1397940:intron 45.0%
ATTCCCACACACGTTGTAGT+AGG - tig0022216:55940-55959 Msa1397940:CDS 45.0%
CAACCTACTACAACGTGTGT+GGG + tig0022216:55946-55965 None:intergenic 45.0%
TCAACCTACTACAACGTGTG+TGG + tig0022216:55947-55966 None:intergenic 45.0%
GTTAGTAGTACTGCTATGGC+AGG - tig0022216:56003-56022 Msa1397940:CDS 45.0%
CTCTCCTTGTCACCTATTTG+CGG + tig0022216:56114-56133 None:intergenic 45.0%
AATGGTACGCTTAGCTAGAG+AGG - tig0022216:56167-56186 Msa1397940:intron 45.0%
AAGAGAGAATTGGGGCTTTC+AGG - tig0022216:56246-56265 Msa1397940:five_prime_UTR 45.0%
!! AGAATTGGGGCTTTCAGGTT+AGG - tig0022216:56251-56270 Msa1397940:five_prime_UTR 45.0%
AGGACTCGACACAATTGGAA+GGG - tig0022216:55564-55583 Msa1397940:intron 45.0%
ATTCCCACACACGTTGTAGT+AGG - tig0022216:55940-55959 Msa1397940:CDS 45.0%
CAACCTACTACAACGTGTGT+GGG + tig0022216:55946-55965 None:intergenic 45.0%
TCAACCTACTACAACGTGTG+TGG + tig0022216:55947-55966 None:intergenic 45.0%
GTTAGTAGTACTGCTATGGC+AGG - tig0022216:56003-56022 Msa1397940:CDS 45.0%
CTCTCCTTGTCACCTATTTG+CGG + tig0022216:56114-56133 None:intergenic 45.0%
AATGGTACGCTTAGCTAGAG+AGG - tig0022216:56167-56186 Msa1397940:intron 45.0%
AAGAGAGAATTGGGGCTTTC+AGG - tig0022216:56246-56265 Msa1397940:five_prime_UTR 45.0%
!! AGAATTGGGGCTTTCAGGTT+AGG - tig0022216:56251-56270 Msa1397940:five_prime_UTR 45.0%
AGCAAAGACGCGAGTAGAGT+AGG - tig0022216:55031-55050 Msa1397940:CDS 50.0%
GCAAAGACGCGAGTAGAGTA+GGG - tig0022216:55032-55051 Msa1397940:CDS 50.0%
GCGAGTAGAGTAGGGTTTGA+GGG - tig0022216:55040-55059 Msa1397940:CDS 50.0%
TTGTGTCGAGTCCTCTTCCA+TGG + tig0022216:55558-55577 None:intergenic 50.0%
GGAAGAGGACTCGACACAAT+TGG - tig0022216:55559-55578 Msa1397940:intron 50.0%
GAGGACTCGACACAATTGGA+AGG - tig0022216:55563-55582 Msa1397940:intron 50.0%
CTCGACACAATTGGAAGGGT+TGG - tig0022216:55568-55587 Msa1397940:intron 50.0%
GGCAGGCAATAGCGAAATAG+CGG - tig0022216:56020-56039 Msa1397940:CDS 50.0%
GTTGCCGCAAATAGGTGACA+AGG - tig0022216:56107-56126 Msa1397940:intron 50.0%
AGCAAAGACGCGAGTAGAGT+AGG - tig0022216:55031-55050 Msa1397940:CDS 50.0%
GCAAAGACGCGAGTAGAGTA+GGG - tig0022216:55032-55051 Msa1397940:CDS 50.0%
GCGAGTAGAGTAGGGTTTGA+GGG - tig0022216:55040-55059 Msa1397940:CDS 50.0%
TTGTGTCGAGTCCTCTTCCA+TGG + tig0022216:55558-55577 None:intergenic 50.0%
GGAAGAGGACTCGACACAAT+TGG - tig0022216:55559-55578 Msa1397940:intron 50.0%
GAGGACTCGACACAATTGGA+AGG - tig0022216:55563-55582 Msa1397940:intron 50.0%
CTCGACACAATTGGAAGGGT+TGG - tig0022216:55568-55587 Msa1397940:intron 50.0%
GGCAGGCAATAGCGAAATAG+CGG - tig0022216:56020-56039 Msa1397940:CDS 50.0%
GTTGCCGCAAATAGGTGACA+AGG - tig0022216:56107-56126 Msa1397940:intron 50.0%
CGCGAGTAGAGTAGGGTTTG+AGG - tig0022216:55039-55058 Msa1397940:CDS 55.0%
TTGCGTTGCAGGCGAGTGAT+AGG - tig0022216:55183-55202 Msa1397940:intron 55.0%
GCAATAGCGAAATAGCGGCG+AGG - tig0022216:56025-56044 Msa1397940:CDS 55.0%
CGAAATAGCGGCGAGGACTA+GGG - tig0022216:56032-56051 Msa1397940:CDS 55.0%
GAAATAGCGGCGAGGACTAG+GGG - tig0022216:56033-56052 Msa1397940:CDS 55.0%
CGCGAGTAGAGTAGGGTTTG+AGG - tig0022216:55039-55058 Msa1397940:CDS 55.0%
TTGCGTTGCAGGCGAGTGAT+AGG - tig0022216:55183-55202 Msa1397940:intron 55.0%
GCAATAGCGAAATAGCGGCG+AGG - tig0022216:56025-56044 Msa1397940:CDS 55.0%
CGAAATAGCGGCGAGGACTA+GGG - tig0022216:56032-56051 Msa1397940:CDS 55.0%
GAAATAGCGGCGAGGACTAG+GGG - tig0022216:56033-56052 Msa1397940:CDS 55.0%
GTTGCGTTGCGTTGCGTTGC+AGG - tig0022216:55172-55191 Msa1397940:intron 60.0%
GGACCATCAGTGTGCAACCC+CGG - tig0022216:55589-55608 Msa1397940:intron 60.0%
TGACCGGGGTTGCACACTGA+TGG + tig0022216:55595-55614 None:intergenic 60.0%
GCGAAATAGCGGCGAGGACT+AGG - tig0022216:56031-56050 Msa1397940:CDS 60.0%
GTTGCGTTGCGTTGCGTTGC+AGG - tig0022216:55172-55191 Msa1397940:intron 60.0%
GGACCATCAGTGTGCAACCC+CGG - tig0022216:55589-55608 Msa1397940:intron 60.0%
TGACCGGGGTTGCACACTGA+TGG + tig0022216:55595-55614 None:intergenic 60.0%
GCGAAATAGCGGCGAGGACT+AGG - tig0022216:56031-56050 Msa1397940:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0022216 gene 54970 56318 54970 ID=Msa1397940;Name=Msa1397940
tig0022216 mRNA 54970 56318 54970 ID=Msa1397940-mRNA-1;Parent=Msa1397940;Name=Msa1397940-mRNA-1;_AED=0.45;_eAED=0.45;_QI=123|0.5|0.66|0.66|1|1|3|0|106
tig0022216 exon 54970 55074 54970 ID=Msa1397940-mRNA-1:exon:16363;Parent=Msa1397940-mRNA-1
tig0022216 exon 55885 56094 55885 ID=Msa1397940-mRNA-1:exon:16362;Parent=Msa1397940-mRNA-1
tig0022216 exon 56190 56318 56190 ID=Msa1397940-mRNA-1:exon:16361;Parent=Msa1397940-mRNA-1
tig0022216 five_prime_UTR 56196 56318 56196 ID=Msa1397940-mRNA-1:five_prime_utr;Parent=Msa1397940-mRNA-1
tig0022216 CDS 56190 56195 56190 ID=Msa1397940-mRNA-1:cds;Parent=Msa1397940-mRNA-1
tig0022216 CDS 55885 56094 55885 ID=Msa1397940-mRNA-1:cds;Parent=Msa1397940-mRNA-1
tig0022216 CDS 54970 55074 54970 ID=Msa1397940-mRNA-1:cds;Parent=Msa1397940-mRNA-1
Gene Sequence

>Msa1397940

ATGCAGGCGAGTGATAGGTTTAACATAAATTCCCAACTTGAGCATCTTCAAGCTAAATACGTTGGAACTGGACATGCTGATATCAACAGATTTGAATGGGCTGTGAATATTCAACGTGATAGCTATGCTTCATACATTGGTCATTACCCTTTACTTTCTTACTTTTCTATCGCTCAAAACGAATCTATTGGTAGACAGCGTTATACTTTTATGCAGGAAACGATTAGAGGGAAATCTTCAAGCGATTTAAGAGAGAATTGGGGCTTTCAGGTTAGGAAGTTTGCTGACCTTGAAAGTTCTTCATCGTTCTTTCCTTTGTAA

Protein sequence

>Msa1397940

MQASDRFNINSQLEHLQAKYVGTGHADINRFEWAVNIQRDSYASYIGHYPLLSYFSIAQNESIGRQRYTFMQETIRGKSSSDLRENWGFQVRKFADLESSSSFFPL*