Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0003280 | sp|P29449|TRXH1_TOBAC | 76.829 | 82 | 17 | 1 | 1 | 80 | 37 | 118 | 2.45e-41 | 134 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0003280 | A0A2I7VTB4 | 96.629 | 89 | 1 | 1 | 1 | 87 | 31 | 119 | 5.55e-52 | 167 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003280 | Msa0050730 | 0.860496 | 1.983248e-63 | -8.615850e-47 |
Msa0003280 | Msa0050760 | 0.829073 | 6.311160e-55 | -8.615850e-47 |
Msa0003280 | Msa0132620 | 0.803026 | 4.243012e-49 | -8.615850e-47 |
Msa0003280 | Msa0302650 | 0.816918 | 4.315490e-52 | -8.615850e-47 |
Msa0003280 | Msa0328210 | 0.808456 | 3.070438e-50 | -8.615850e-47 |
Msa0003280 | Msa0344580 | 0.802572 | 5.263308e-49 | -8.615850e-47 |
Msa0003280 | Msa0403190 | 0.850701 | 1.431993e-60 | -8.615850e-47 |
Msa0003280 | Msa0426810 | 0.815726 | 7.975168e-52 | -8.615850e-47 |
Msa0003280 | Msa0449820 | 0.804851 | 1.771207e-49 | -8.615850e-47 |
Msa0003280 | Msa0486570 | 0.834439 | 2.995961e-56 | -8.615850e-47 |
Msa0003280 | Msa0524200 | -0.821192 | 4.601445e-53 | -8.615850e-47 |
Msa0003280 | Msa0609970 | 0.814779 | 1.295112e-51 | -8.615850e-47 |
Msa0003280 | Msa0622340 | 0.814203 | 1.735975e-51 | -8.615850e-47 |
Msa0003280 | Msa0631840 | 0.801529 | 8.624709e-49 | -8.615850e-47 |
Msa0003280 | Msa0783180 | 0.807061 | 6.074817e-50 | -8.615850e-47 |
Msa0003280 | Msa0824730 | 0.805329 | 1.407199e-49 | -8.615850e-47 |
Msa0003280 | Msa0908170 | 0.806790 | 6.932233e-50 | -8.615850e-47 |
Msa0003280 | Msa0922540 | 0.826782 | 2.245948e-54 | -8.615850e-47 |
Msa0003280 | Msa0942730 | 0.811658 | 6.272197e-51 | -8.615850e-47 |
Msa0003280 | Msa0955310 | 0.828275 | 9.842702e-55 | -8.615850e-47 |
Msa0003280 | Msa0958020 | 0.821086 | 4.868232e-53 | -8.615850e-47 |
Msa0003280 | Msa0992590 | 0.810600 | 1.063612e-50 | -8.615850e-47 |
Msa0003280 | Msa0996090 | 0.848689 | 5.224108e-60 | -8.615850e-47 |
Msa0003280 | Msa1002040 | 0.809143 | 2.188637e-50 | -8.615850e-47 |
Msa0003280 | Msa1015060 | 0.800065 | 1.716378e-48 | -8.615850e-47 |
Msa0003280 | Msa1092820 | 0.811490 | 6.821189e-51 | -8.615850e-47 |
Msa0003280 | Msa1218650 | 0.819526 | 1.109208e-52 | -8.615850e-47 |
Msa0003280 | Msa1223840 | 0.820734 | 5.866377e-53 | -8.615850e-47 |
Msa0003280 | Msa1246530 | -0.828849 | 7.152732e-55 | -8.615850e-47 |
Msa0003280 | Msa1337730 | 0.817361 | 3.432078e-52 | -8.615850e-47 |
Msa0003280 | Msa1367390 | -0.811936 | 5.456431e-51 | -8.615850e-47 |
Msa0003280 | Msa1367940 | 0.802050 | 6.742875e-49 | -8.615850e-47 |
Msa0003280 | Msa1398860 | 0.809785 | 1.593518e-50 | -8.615850e-47 |
Msa0003280 | Msa1419110 | 0.803668 | 3.123387e-49 | -8.615850e-47 |
Msa0003280 | Msa1439230 | 0.814717 | 1.336123e-51 | -8.615850e-47 |
Msa0003280 | Msa1440600 | 0.833329 | 5.676018e-56 | -8.615850e-47 |
Msa0003280 | Msa1456650 | 0.811856 | 5.678737e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0003280 | MtrunA17_Chr1g0155721 | 95.506 | 89 | 2 | 1 | 1 | 87 | 31 | 119 | 4.03e-55 | 166 |
Msa0003280 | MtrunA17_Chr3g0142051 | 82.927 | 82 | 12 | 1 | 1 | 80 | 31 | 112 | 3.49e-44 | 138 |
Msa0003280 | MtrunA17_Chr5g0404831 | 69.512 | 82 | 23 | 1 | 1 | 80 | 33 | 114 | 6.75e-37 | 120 |
Msa0003280 | MtrunA17_Chr7g0216481 | 57.831 | 83 | 33 | 1 | 1 | 81 | 51 | 133 | 6.29e-32 | 108 |
Msa0003280 | MtrunA17_Chr8g0393201 | 56.098 | 82 | 34 | 1 | 1 | 80 | 252 | 333 | 2.43e-26 | 98.6 |
Msa0003280 | MtrunA17_Chr8g0334481 | 45.570 | 79 | 41 | 1 | 1 | 77 | 51 | 129 | 8.89e-25 | 90.1 |
Msa0003280 | MtrunA17_Chr7g0245141 | 43.529 | 85 | 46 | 1 | 1 | 83 | 49 | 133 | 2.51e-23 | 86.7 |
Msa0003280 | MtrunA17_Chr5g0415761 | 53.571 | 84 | 37 | 1 | 1 | 82 | 45 | 128 | 1.84e-22 | 84.0 |
Msa0003280 | MtrunA17_Chr5g0415771 | 53.012 | 83 | 37 | 1 | 1 | 81 | 44 | 126 | 6.49e-21 | 80.1 |
Msa0003280 | MtrunA17_Chr2g0280411 | 46.067 | 89 | 46 | 1 | 1 | 87 | 34 | 122 | 7.50e-20 | 77.4 |
Msa0003280 | MtrunA17_Chr5g0415741 | 50.000 | 84 | 40 | 1 | 1 | 82 | 43 | 126 | 3.00e-19 | 75.9 |
Msa0003280 | MtrunA17_Chr4g0052481 | 43.662 | 71 | 36 | 1 | 2 | 68 | 85 | 155 | 5.13e-19 | 76.3 |
Msa0003280 | MtrunA17_Chr1g0201781 | 40.845 | 71 | 39 | 2 | 1 | 68 | 81 | 151 | 1.87e-16 | 69.7 |
Msa0003280 | MtrunA17_Chr2g0319291 | 40.506 | 79 | 45 | 1 | 1 | 77 | 35 | 113 | 2.46e-16 | 68.2 |
Msa0003280 | MtrunA17_Chr3g0125821 | 40.230 | 87 | 48 | 2 | 1 | 83 | 89 | 175 | 4.39e-16 | 68.9 |
Msa0003280 | MtrunA17_Chr7g0249461 | 41.250 | 80 | 44 | 1 | 1 | 77 | 101 | 180 | 8.96e-16 | 68.2 |
Msa0003280 | MtrunA17_Chr4g0042051 | 40.506 | 79 | 45 | 1 | 1 | 77 | 35 | 113 | 2.57e-15 | 65.9 |
Msa0003280 | MtrunA17_Chr7g0264661 | 34.177 | 79 | 52 | 0 | 2 | 80 | 49 | 127 | 5.67e-15 | 65.1 |
Msa0003280 | MtrunA17_Chr3g0142031 | 70.732 | 41 | 10 | 1 | 32 | 70 | 5 | 45 | 6.42e-14 | 60.1 |
Msa0003280 | MtrunA17_Chr2g0317731 | 42.254 | 71 | 38 | 2 | 1 | 68 | 89 | 159 | 1.00e-13 | 62.8 |
Msa0003280 | MtrunA17_Chr8g0360031 | 38.554 | 83 | 47 | 3 | 1 | 79 | 92 | 174 | 7.67e-13 | 60.5 |
Msa0003280 | MtrunA17_Chr1g0211871 | 37.363 | 91 | 43 | 4 | 1 | 83 | 89 | 173 | 7.88e-13 | 60.5 |
Msa0003280 | MtrunA17_Chr4g0044731 | 35.526 | 76 | 46 | 1 | 1 | 73 | 84 | 159 | 8.50e-13 | 60.1 |
Msa0003280 | MtrunA17_Chr6g0488561 | 34.066 | 91 | 55 | 3 | 1 | 86 | 98 | 188 | 1.13e-11 | 57.8 |
Msa0003280 | MtrunA17_Chr4g0047431 | 36.250 | 80 | 49 | 1 | 2 | 79 | 25 | 104 | 2.52e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0003280 | AT3G51030.1 | 69.512 | 82 | 23 | 1 | 1 | 80 | 31 | 112 | 2.71e-39 | 126 |
Msa0003280 | AT1G45145.1 | 60.976 | 82 | 30 | 1 | 1 | 80 | 30 | 111 | 1.10e-32 | 110 |
Msa0003280 | AT1G19730.1 | 60.674 | 89 | 32 | 2 | 1 | 86 | 31 | 119 | 6.77e-31 | 105 |
Msa0003280 | AT5G42980.1 | 57.955 | 88 | 35 | 1 | 1 | 86 | 30 | 117 | 1.65e-30 | 104 |
Msa0003280 | AT5G39950.1 | 51.852 | 81 | 37 | 1 | 1 | 79 | 50 | 130 | 1.58e-26 | 94.7 |
Msa0003280 | AT3G17880.2 | 48.235 | 85 | 42 | 1 | 1 | 83 | 288 | 372 | 4.43e-24 | 93.6 |
Msa0003280 | AT3G17880.1 | 48.235 | 85 | 42 | 1 | 1 | 83 | 295 | 379 | 5.17e-24 | 93.6 |
Msa0003280 | AT3G08710.2 | 43.750 | 80 | 43 | 1 | 1 | 78 | 48 | 127 | 2.54e-23 | 87.0 |
Msa0003280 | AT3G08710.3 | 43.750 | 80 | 43 | 1 | 1 | 78 | 48 | 127 | 2.54e-23 | 87.0 |
Msa0003280 | AT3G08710.1 | 43.750 | 80 | 43 | 1 | 1 | 78 | 48 | 127 | 2.54e-23 | 87.0 |
Msa0003280 | AT1G59730.1 | 44.578 | 83 | 44 | 1 | 1 | 81 | 46 | 128 | 4.39e-22 | 83.6 |
Msa0003280 | AT3G56420.1 | 46.053 | 76 | 39 | 1 | 1 | 74 | 65 | 140 | 2.64e-21 | 82.0 |
Msa0003280 | AT3G56420.2 | 46.053 | 76 | 39 | 1 | 1 | 74 | 65 | 140 | 2.64e-21 | 82.0 |
Msa0003280 | AT3G56420.3 | 46.053 | 76 | 39 | 1 | 1 | 74 | 65 | 140 | 2.64e-21 | 82.0 |
Msa0003280 | AT1G69880.1 | 42.353 | 85 | 47 | 1 | 1 | 83 | 62 | 146 | 3.63e-20 | 79.0 |
Msa0003280 | AT2G35010.2 | 43.750 | 80 | 41 | 1 | 2 | 77 | 110 | 189 | 2.22e-18 | 75.5 |
Msa0003280 | AT2G35010.1 | 43.750 | 80 | 41 | 1 | 2 | 77 | 110 | 189 | 2.22e-18 | 75.5 |
Msa0003280 | AT2G40790.2 | 43.421 | 76 | 41 | 1 | 1 | 74 | 65 | 140 | 5.12e-18 | 73.6 |
Msa0003280 | AT2G40790.1 | 43.421 | 76 | 41 | 1 | 1 | 74 | 65 | 140 | 5.12e-18 | 73.6 |
Msa0003280 | AT1G11530.1 | 45.570 | 79 | 41 | 1 | 1 | 77 | 27 | 105 | 1.56e-17 | 71.6 |
Msa0003280 | AT5G16400.1 | 40.000 | 80 | 45 | 1 | 1 | 77 | 100 | 179 | 1.06e-15 | 68.6 |
Msa0003280 | AT1G43560.1 | 37.647 | 85 | 45 | 3 | 1 | 77 | 79 | 163 | 1.25e-15 | 67.8 |
Msa0003280 | AT1G76760.1 | 39.437 | 71 | 40 | 2 | 1 | 68 | 84 | 154 | 3.52e-15 | 67.0 |
Msa0003280 | AT1G31020.1 | 44.286 | 70 | 35 | 1 | 2 | 67 | 75 | 144 | 5.26e-15 | 66.2 |
Msa0003280 | AT3G02730.1 | 37.209 | 86 | 51 | 1 | 1 | 83 | 90 | 175 | 1.07e-14 | 65.9 |
Msa0003280 | AT1G03680.1 | 38.554 | 83 | 47 | 3 | 1 | 79 | 95 | 177 | 2.55e-13 | 62.0 |
Msa0003280 | AT3G15360.1 | 37.349 | 83 | 48 | 3 | 1 | 79 | 107 | 189 | 6.10e-13 | 61.2 |
Msa0003280 | AT4G26160.1 | 36.047 | 86 | 50 | 3 | 1 | 81 | 116 | 201 | 1.01e-12 | 61.2 |
Msa0003280 | AT3G53220.1 | 31.646 | 79 | 54 | 0 | 2 | 80 | 47 | 125 | 1.67e-12 | 58.9 |
Msa0003280 | AT4G03520.1 | 36.620 | 71 | 42 | 2 | 1 | 68 | 101 | 171 | 8.32e-12 | 58.2 |
Msa0003280 | AT2G15570.2 | 35.526 | 76 | 46 | 1 | 1 | 73 | 88 | 163 | 1.67e-11 | 57.4 |
Msa0003280 | AT2G15570.1 | 35.526 | 76 | 46 | 1 | 1 | 73 | 87 | 162 | 1.77e-11 | 57.0 |
Msa0003280 | AT4G32580.1 | 33.333 | 81 | 52 | 1 | 1 | 79 | 24 | 104 | 7.85e-11 | 55.1 |
Find 23 sgRNAs with CRISPR-Local
Find 32 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAGCAATCTCAGCTAGAAT+TGG | 0.355652 | 1_1:-5785834 | None:intergenic |
AGAAGGTAAGGAAGTGGATA+AGG | 0.412033 | 1_1:+5786291 | Msa0003280:CDS |
CTTATTCTTGAAAGAAGGTA+AGG | 0.442943 | 1_1:+5786279 | Msa0003280:CDS |
ACCTTCTTATTCTTGAAAGA+AGG | 0.451509 | 1_1:+5786274 | Msa0003280:CDS |
ACCTTGAGGAAGATGACTTC+AGG | 0.453976 | 1_1:-5785864 | None:intergenic |
AAATGCAATCACCAAGCATA+AGG | 0.465102 | 1_1:+5786342 | Msa0003280:CDS |
TAAGGTAGTTGGTGCTAGGA+AGG | 0.479587 | 1_1:+5786309 | Msa0003280:CDS |
TGGATAAGGTAGTTGGTGCT+AGG | 0.488936 | 1_1:+5786305 | Msa0003280:CDS |
AAGGAAGTGGATAAGGTAGT+TGG | 0.491604 | 1_1:+5786298 | Msa0003280:CDS |
AACAGTTGCATCCTTATGCT+TGG | 0.492616 | 1_1:-5786353 | None:intergenic |
ACCTTCTTTCAAGAATAAGA+AGG | 0.495256 | 1_1:-5786275 | None:intergenic |
TTCAGAGTGTTGCTGAGGAA+TGG | 0.506641 | 1_1:+5786233 | Msa0003280:intron |
CTAGAATTGGAGCAATAAAA+CGG | 0.524722 | 1_1:-5785821 | None:intergenic |
CTTGAAAGAAGGTAAGGAAG+TGG | 0.537499 | 1_1:+5786285 | Msa0003280:CDS |
TGGTGCTAGGAAGGAAGAGC+TGG | 0.539272 | 1_1:+5786318 | Msa0003280:CDS |
TCTTTCAAGAATAAGAAGGT+TGG | 0.555397 | 1_1:-5786271 | None:intergenic |
TCCTGAAGTCATCTTCCTCA+AGG | 0.561588 | 1_1:+5785863 | Msa0003280:CDS |
GAATAATAAATAGATTGTGG+TGG | 0.594177 | 1_1:+5785770 | None:intergenic |
TGCTGAGGAATGGTCTGTTG+AGG | 0.618156 | 1_1:+5786243 | Msa0003280:CDS |
CTTCATCAATATCCACCTTG+AGG | 0.619089 | 1_1:-5785878 | None:intergenic |
ATTGGAGCAATAAAACGGCA+TGG | 0.627618 | 1_1:-5785816 | None:intergenic |
CCTATTTCAGAGTGTTGCTG+AGG | 0.630806 | 1_1:+5786228 | Msa0003280:intron |
TGAAGTCATCTTCCTCAAGG+TGG | 0.658466 | 1_1:+5785866 | Msa0003280:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGTTTCTAATATTTTAAGA+TGG | + | chr1_1:5786140-5786159 | Msa0003280:intron | 15.0% |
!! | ATTAAACTTGAGAAAGAATA+AGG | - | chr1_1:5785935-5785954 | None:intergenic | 20.0% |
CTAGAATTGGAGCAATAAAA+CGG | - | chr1_1:5785824-5785843 | None:intergenic | 30.0% | |
! | TGTAGTTTTTGTCAAAATCG+TGG | + | chr1_1:5786015-5786034 | Msa0003280:intron | 30.0% |
GATCATAAGATGACATAACA+TGG | - | chr1_1:5786095-5786114 | None:intergenic | 30.0% | |
TCTTTCAAGAATAAGAAGGT+TGG | - | chr1_1:5786274-5786293 | None:intergenic | 30.0% | |
ACCTTCTTATTCTTGAAAGA+AGG | + | chr1_1:5786274-5786293 | Msa0003280:CDS | 30.0% | |
ACCTTCTTTCAAGAATAAGA+AGG | - | chr1_1:5786278-5786297 | None:intergenic | 30.0% | |
CTTATTCTTGAAAGAAGGTA+AGG | + | chr1_1:5786279-5786298 | Msa0003280:CDS | 30.0% | |
TTAGCAATCTCAGCTAGAAT+TGG | - | chr1_1:5785837-5785856 | None:intergenic | 35.0% | |
GGTGGATATTGATGAAGTAA+AGG | + | chr1_1:5785884-5785903 | Msa0003280:intron | 35.0% | |
!! | AACTAGTCTTAAAGCCGATT+CGG | + | chr1_1:5786205-5786224 | Msa0003280:intron | 35.0% |
AAATGCAATCACCAAGCATA+AGG | + | chr1_1:5786342-5786361 | Msa0003280:CDS | 35.0% | |
!!! | TGGTGGATTTTACTGCTTCA+TGG | + | chr1_1:5785787-5785806 | Msa0003280:CDS | 40.0% |
! | GATTTTACTGCTTCATGGTG+TGG | + | chr1_1:5785792-5785811 | Msa0003280:CDS | 40.0% |
ATTGGAGCAATAAAACGGCA+TGG | - | chr1_1:5785819-5785838 | None:intergenic | 40.0% | |
CTTCATCAATATCCACCTTG+AGG | - | chr1_1:5785881-5785900 | None:intergenic | 40.0% | |
CTTGAAAGAAGGTAAGGAAG+TGG | + | chr1_1:5786285-5786304 | Msa0003280:CDS | 40.0% | |
AGAAGGTAAGGAAGTGGATA+AGG | + | chr1_1:5786291-5786310 | Msa0003280:CDS | 40.0% | |
AAGGAAGTGGATAAGGTAGT+TGG | + | chr1_1:5786298-5786317 | Msa0003280:CDS | 40.0% | |
AACAGTTGCATCCTTATGCT+TGG | - | chr1_1:5786356-5786375 | None:intergenic | 40.0% | |
TCCTGAAGTCATCTTCCTCA+AGG | + | chr1_1:5785863-5785882 | Msa0003280:CDS | 45.0% | |
ACCTTGAGGAAGATGACTTC+AGG | - | chr1_1:5785867-5785886 | None:intergenic | 45.0% | |
TGAAGTCATCTTCCTCAAGG+TGG | + | chr1_1:5785866-5785885 | Msa0003280:CDS | 45.0% | |
!! | CACTCTGAAATAGGCCGAAT+CGG | - | chr1_1:5786222-5786241 | None:intergenic | 45.0% |
!! | CCTCAGCAACACTCTGAAAT+AGG | - | chr1_1:5786231-5786250 | None:intergenic | 45.0% |
!! | CCTATTTCAGAGTGTTGCTG+AGG | + | chr1_1:5786228-5786247 | Msa0003280:intron | 45.0% |
!! | TTCAGAGTGTTGCTGAGGAA+TGG | + | chr1_1:5786233-5786252 | Msa0003280:intron | 45.0% |
! | TGGATAAGGTAGTTGGTGCT+AGG | + | chr1_1:5786305-5786324 | Msa0003280:CDS | 45.0% |
!! | TAAGGTAGTTGGTGCTAGGA+AGG | + | chr1_1:5786309-5786328 | Msa0003280:CDS | 45.0% |
TGCTGAGGAATGGTCTGTTG+AGG | + | chr1_1:5786243-5786262 | Msa0003280:CDS | 50.0% | |
! | TGGTGCTAGGAAGGAAGAGC+TGG | + | chr1_1:5786318-5786337 | Msa0003280:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 5785783 | 5786387 | 5785783 | ID=Msa0003280;Name=Msa0003280 |
chr1_1 | mRNA | 5785783 | 5786387 | 5785783 | ID=Msa0003280-mRNA-1;Parent=Msa0003280;Name=Msa0003280-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|88 |
chr1_1 | exon | 5785783 | 5785899 | 5785783 | ID=Msa0003280-mRNA-1:exon:1779;Parent=Msa0003280-mRNA-1 |
chr1_1 | exon | 5786238 | 5786387 | 5786238 | ID=Msa0003280-mRNA-1:exon:1780;Parent=Msa0003280-mRNA-1 |
chr1_1 | CDS | 5785783 | 5785899 | 5785783 | ID=Msa0003280-mRNA-1:cds;Parent=Msa0003280-mRNA-1 |
chr1_1 | CDS | 5786238 | 5786387 | 5786238 | ID=Msa0003280-mRNA-1:cds;Parent=Msa0003280-mRNA-1 |
Gene Sequence |
Protein sequence |