AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0784340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0784340 MtrunA17_Chr5g0437181 98.045 358 7 0 1 358 1 358 0.0 729
Msa0784340 MtrunA17_Chr3g0113641 76.685 356 83 0 3 358 4 359 0.0 576
Msa0784340 MtrunA17_Chr4g0006371 66.129 372 112 3 1 358 1 372 0.0 521
Msa0784340 MtrunA17_Chr7g0242551 66.575 362 114 3 1 356 2 362 0.0 510
Msa0784340 MtrunA17_Chr8g0375601 37.644 348 212 3 10 355 7 351 5.25e-84 259
Msa0784340 MtrunA17_Chr5g0423191 36.550 342 210 3 14 355 13 347 1.01e-81 253
Msa0784340 MtrunA17_Chr8g0375671 37.784 352 203 7 11 355 14 356 1.99e-81 252
Msa0784340 MtrunA17_Chr5g0420951 36.550 342 212 2 14 355 18 354 4.03e-81 251
Msa0784340 MtrunA17_Chr5g0423251 36.257 342 211 3 14 355 13 347 4.64e-80 248
Msa0784340 MtrunA17_Chr8g0345831 41.124 338 189 6 20 355 13 342 1.08e-79 247
Msa0784340 MtrunA17_Chr8g0365241 36.842 323 198 3 14 336 23 339 1.87e-79 247
Msa0784340 MtrunA17_Chr3g0109041 39.489 352 195 9 12 354 8 350 4.38e-79 246
Msa0784340 MtrunA17_Chr3g0128001 41.853 313 171 5 25 336 15 317 3.87e-78 243
Msa0784340 MtrunA17_Chr2g0314401 39.130 345 199 4 14 355 17 353 4.42e-78 243
Msa0784340 MtrunA17_Chr7g0239111 37.615 327 198 2 10 336 16 336 4.75e-78 244
Msa0784340 MtrunA17_Chr5g0421041 35.673 342 211 4 14 355 13 345 8.22e-78 243
Msa0784340 MtrunA17_Chr2g0314391 37.971 345 203 4 14 355 36 372 8.67e-78 243
Msa0784340 MtrunA17_Chr5g0421091 38.226 327 188 5 14 336 11 327 2.96e-77 241
Msa0784340 MtrunA17_Chr2g0296371 37.037 324 199 4 14 336 17 336 3.17e-77 241
Msa0784340 MtrunA17_Chr5g0420981 35.604 323 203 2 14 336 18 335 9.46e-77 240
Msa0784340 MtrunA17_Chr5g0420941 38.390 323 192 3 14 336 11 326 1.56e-76 239
Msa0784340 MtrunA17_Chr2g0314381 37.901 343 207 4 14 355 42 379 1.76e-76 240
Msa0784340 MtrunA17_Chr7g0239101 35.260 346 218 2 10 355 16 355 7.58e-76 238
Msa0784340 MtrunA17_Chr8g0375571 38.871 319 184 5 14 328 11 322 4.20e-75 236
Msa0784340 MtrunA17_Chr1g0162191 37.778 315 192 2 22 336 20 330 1.15e-74 235
Msa0784340 MtrunA17_Chr5g0423221 36.337 344 209 4 14 355 37 372 1.84e-74 235
Msa0784340 MtrunA17_Chr5g0421011 35.088 342 215 3 14 355 13 347 2.88e-74 234
Msa0784340 MtrunA17_Chr7g0239121 35.756 344 214 3 10 352 12 349 2.97e-74 234
Msa0784340 MtrunA17_Chr7g0239821 35.244 349 217 3 10 355 22 364 1.61e-73 232
Msa0784340 MtrunA17_Chr5g0398291 37.764 331 197 5 14 336 8 337 3.22e-73 231
Msa0784340 MtrunA17_Chr5g0421101 35.965 342 212 3 14 355 13 347 7.75e-73 230
Msa0784340 MtrunA17_Chr3g0114861 38.037 326 191 4 14 337 6 322 1.03e-72 229
Msa0784340 MtrunA17_Chr8g0375701 37.538 333 199 5 24 355 30 354 1.03e-71 227
Msa0784340 MtrunA17_Chr5g0423201 36.103 349 210 6 11 355 9 348 5.03e-71 225
Msa0784340 MtrunA17_Chr5g0423211 36.503 326 196 5 14 336 13 330 1.53e-70 224
Msa0784340 MtrunA17_Chr5g0420901 35.277 343 213 5 14 355 12 346 1.05e-69 222
Msa0784340 MtrunA17_Chr5g0439011 38.019 313 179 6 48 355 4 306 8.29e-69 218
Msa0784340 MtrunA17_Chr3g0121141 36.656 311 184 6 47 355 2 301 4.01e-68 216
Msa0784340 MtrunA17_Chr6g0455481 39.450 327 180 6 24 345 18 331 2.74e-66 213
Msa0784340 MtrunA17_Chr2g0289341 36.129 310 185 6 48 354 3 302 7.97e-66 211
Msa0784340 MtrunA17_Chr3g0125201 38.095 294 166 4 49 336 3 286 3.21e-65 209
Msa0784340 MtrunA17_Chr8g0371931 36.556 331 200 8 11 337 1 325 2.69e-64 208
Msa0784340 MtrunA17_Chr5g0424201 34.441 331 205 5 11 336 3 326 4.81e-64 207
Msa0784340 MtrunA17_Chr8g0375681 37.868 272 167 2 84 355 15 284 2.54e-63 203
Msa0784340 MtrunA17_Chr8g0371921 36.858 331 199 8 11 337 1 325 2.89e-63 206
Msa0784340 MtrunA17_Chr3g0087031 35.821 335 198 8 14 341 24 348 2.91e-63 205
Msa0784340 MtrunA17_Chr7g0239071 37.818 275 167 2 82 355 29 300 5.25e-63 203
Msa0784340 MtrunA17_Chr5g0405411 36.697 327 196 8 14 337 7 325 8.60e-63 204
Msa0784340 MtrunA17_Chr4g0045411 37.941 340 190 10 29 355 12 343 9.29e-63 204
Msa0784340 MtrunA17_Chr5g0426891 34.848 330 203 7 11 336 1 322 1.68e-62 203
Msa0784340 MtrunA17_Chr8g0370711 34.824 313 197 5 44 355 47 353 1.21e-61 201
Msa0784340 MtrunA17_Chr3g0145171 36.879 282 173 3 48 328 51 328 3.08e-61 200
Msa0784340 MtrunA17_Chr7g0232161 36.111 288 177 3 3 289 13 294 1.66e-60 197
Msa0784340 MtrunA17_Chr1g0179801 34.734 357 207 9 14 355 27 372 2.29e-60 198
Msa0784340 MtrunA17_Chr7g0250511 35.976 328 199 7 16 340 16 335 2.40e-59 195
Msa0784340 MtrunA17_Chr7g0220001 35.976 328 189 8 24 345 17 329 2.84e-59 194
Msa0784340 MtrunA17_Chr5g0424211 34.069 317 197 5 14 325 6 315 2.85e-59 194
Msa0784340 MtrunA17_Chr3g0102041 36.190 315 193 6 23 335 14 322 3.15e-59 195
Msa0784340 MtrunA17_Chr2g0311921 34.104 346 217 5 14 355 19 357 8.14e-59 194
Msa0784340 MtrunA17_Chr4g0064781 36.429 280 171 2 49 328 50 322 9.22e-59 193
Msa0784340 MtrunA17_Chr1g0184161 34.375 320 199 7 20 337 10 320 2.56e-58 192
Msa0784340 MtrunA17_Chr1g0184151 35.110 319 196 7 20 336 10 319 2.70e-58 192
Msa0784340 MtrunA17_Chr1g0162351 34.659 352 202 10 24 355 46 389 8.64e-58 192
Msa0784340 MtrunA17_Chr8g0336751 36.176 340 205 6 14 349 59 390 1.12e-57 192
Msa0784340 MtrunA17_Chr7g0266651 36.188 362 205 9 5 355 15 361 1.34e-57 191
Msa0784340 MtrunA17_Chr1g0184101 35.802 324 195 8 20 341 9 321 1.43e-57 190
Msa0784340 MtrunA17_Chr1g0162321 34.758 351 201 10 25 355 47 389 4.44e-57 190
Msa0784340 MtrunA17_Chr8g0370721 35.315 286 180 3 44 328 47 328 8.53e-57 188
Msa0784340 MtrunA17_Chr8g0336851 33.237 346 217 6 14 355 28 363 1.12e-56 188
Msa0784340 MtrunA17_Chr5g0420721 36.290 248 156 1 108 355 4 249 1.20e-56 185
Msa0784340 MtrunA17_Chr3g0114871 37.091 275 164 4 14 286 7 274 1.42e-56 186
Msa0784340 MtrunA17_Chr7g0220011 33.742 326 199 7 24 345 15 327 1.80e-56 187
Msa0784340 MtrunA17_Chr7g0265221 32.768 354 213 9 22 357 35 381 2.23e-56 188
Msa0784340 MtrunA17_Chr4g0045441 35.942 345 195 12 29 355 8 344 3.82e-56 187
Msa0784340 MtrunA17_Chr7g0235951 33.714 350 214 8 14 355 33 372 4.29e-56 187
Msa0784340 MtrunA17_Chr3g0126741 33.735 332 210 6 11 339 20 344 8.39e-56 186
Msa0784340 MtrunA17_Chr1g0184121 34.688 320 199 7 18 335 7 318 1.04e-55 185
Msa0784340 MtrunA17_Chr8g0336781 32.676 355 226 6 5 355 54 399 1.40e-55 187
Msa0784340 MtrunA17_Chr1g0162361 33.994 353 191 11 25 355 4 336 2.19e-55 184
Msa0784340 MtrunA17_Chr8g0348081 34.921 315 194 5 45 355 56 363 3.26e-55 184
Msa0784340 MtrunA17_Chr2g0311761 32.659 346 222 5 14 355 33 371 3.36e-55 185
Msa0784340 MtrunA17_Chr2g0311831 33.815 346 217 6 14 355 33 370 4.91e-55 184
Msa0784340 MtrunA17_Chr5g0412671 36.086 327 198 6 15 336 5 325 8.32e-55 183
Msa0784340 MtrunA17_Chr1g0184111 34.472 322 199 8 18 336 7 319 2.51e-54 182
Msa0784340 MtrunA17_Chr2g0311691 33.611 360 221 9 5 355 18 368 2.79e-54 182
Msa0784340 MtrunA17_Chr2g0314371 35.783 313 169 7 14 303 17 320 3.33e-54 181
Msa0784340 MtrunA17_Chr4g0045451 36.025 322 176 12 29 329 8 320 4.80e-54 181
Msa0784340 MtrunA17_Chr8g0336631 32.665 349 216 8 14 355 28 364 5.02e-54 181
Msa0784340 MtrunA17_Chr5g0412651 35.692 325 202 7 15 336 5 325 6.55e-54 181
Msa0784340 MtrunA17_Chr1g0204181 35.331 317 192 6 24 333 37 347 7.20e-54 181
Msa0784340 MtrunA17_Chr4g0066121 34.835 333 198 10 14 339 28 348 1.00e-53 181
Msa0784340 MtrunA17_Chr3g0145181 33.010 309 197 5 44 348 44 346 1.09e-53 180
Msa0784340 MtrunA17_Chr5g0412681 36.842 304 177 7 36 336 21 312 1.74e-53 179
Msa0784340 MtrunA17_Chr8g0336861 32.759 348 218 8 14 355 28 365 1.75e-53 180
Msa0784340 MtrunA17_Chr4g0050031 33.711 353 221 6 10 355 19 365 2.05e-53 180
Msa0784340 MtrunA17_Chr6g0474391 34.472 322 188 7 24 333 42 352 4.53e-53 179
Msa0784340 MtrunA17_Chr4g0045431 33.333 345 204 11 29 355 8 344 1.23e-52 177
Msa0784340 MtrunA17_Chr6g0472861 34.262 359 197 11 14 351 28 368 1.47e-52 178
Msa0784340 MtrunA17_Chr6g0488511 36.918 279 159 7 49 322 3 269 2.47e-52 175
Msa0784340 MtrunA17_Chr8g0336761 31.897 348 219 8 14 355 28 363 2.68e-52 177
Msa0784340 MtrunA17_Chr2g0311701 31.868 364 222 11 5 355 24 374 3.41e-52 177
Msa0784340 MtrunA17_Chr4g0045471 32.955 352 211 11 22 355 1 345 3.41e-52 176
Msa0784340 MtrunA17_Chr2g0311681 32.153 367 217 11 5 355 18 368 3.62e-52 177
Msa0784340 MtrunA17_Chr1g0161041 35.503 338 199 9 5 336 51 375 8.57e-52 176
Msa0784340 MtrunA17_Chr7g0239091 32.277 347 218 5 10 355 120 450 1.16e-51 178
Msa0784340 MtrunA17_Chr1g0161081 36.858 331 186 9 14 336 37 352 1.71e-51 175
Msa0784340 MtrunA17_Chr8g0364471 31.389 360 227 8 2 352 21 369 2.06e-51 175
Msa0784340 MtrunA17_Chr1g0184241 31.778 343 219 6 5 344 25 355 7.84e-51 173
Msa0784340 MtrunA17_Chr3g0093761 33.143 350 211 10 14 355 18 352 5.15e-50 171
Msa0784340 MtrunA17_Chr1g0191201 34.539 304 179 6 50 341 54 349 6.93e-50 171
Msa0784340 MtrunA17_Chr3g0093751 33.048 351 211 11 14 355 18 353 1.62e-49 169
Msa0784340 MtrunA17_Chr3g0145201 32.581 310 199 5 43 348 678 981 2.17e-49 177
Msa0784340 MtrunA17_Chr2g0311861 32.464 345 203 8 14 355 29 346 1.64e-48 167
Msa0784340 MtrunA17_Chr2g0311631 33.333 333 199 9 14 336 22 341 1.65e-48 167
Msa0784340 MtrunA17_Chr3g0093741 31.609 348 220 8 14 355 18 353 3.29e-48 166
Msa0784340 MtrunA17_Chr7g0225881 32.865 356 203 11 14 351 28 365 1.09e-47 165
Msa0784340 MtrunA17_Chr8g0351101 30.909 330 192 6 22 333 30 341 1.62e-47 165
Msa0784340 MtrunA17_Chr2g0311741 33.548 310 195 7 48 355 26 326 1.88e-47 163
Msa0784340 MtrunA17_Chr4g0045461 36.508 315 180 9 29 328 8 317 2.13e-47 164
Msa0784340 MtrunA17_Chr2g0332191 32.209 326 193 7 22 336 25 333 2.68e-47 164
Msa0784340 MtrunA17_Chr1g0161111 34.347 329 197 9 14 336 96 411 3.18e-47 165
Msa0784340 MtrunA17_Chr1g0187831 31.198 359 229 9 7 355 23 373 4.15e-47 164
Msa0784340 MtrunA17_Chr7g0265351 34.154 325 179 10 44 355 34 336 1.36e-46 161
Msa0784340 MtrunA17_Chr1g0167911 33.533 334 208 8 7 336 13 336 1.33e-45 159
Msa0784340 MtrunA17_Chr8g0335411 32.955 352 218 9 12 355 31 372 1.59e-45 159
Msa0784340 MtrunA17_Chr8g0384461 29.360 344 218 8 11 343 14 343 2.68e-45 159
Msa0784340 MtrunA17_Chr1g0187811 30.000 350 225 9 18 355 151 492 4.44e-45 161
Msa0784340 MtrunA17_Chr3g0125421 33.333 339 203 8 15 341 5 332 4.76e-45 158
Msa0784340 MtrunA17_Chr2g0319491 33.333 291 175 7 49 337 33 306 6.01e-45 157
Msa0784340 MtrunA17_Chr1g0187821 30.659 349 227 8 14 355 29 369 7.48e-45 157
Msa0784340 MtrunA17_Chr2g0311711 31.085 341 215 9 5 336 22 351 2.16e-44 156
Msa0784340 MtrunA17_Chr4g0066991 30.659 349 206 8 14 355 33 352 7.04e-44 154
Msa0784340 MtrunA17_Chr1g0167961 32.000 350 223 8 5 349 26 365 1.87e-43 154
Msa0784340 MtrunA17_Chr7g0247991 33.144 353 216 10 12 355 31 372 2.12e-43 154
Msa0784340 MtrunA17_Chr8g0354261 30.286 350 227 8 14 355 33 373 2.39e-43 154
Msa0784340 MtrunA17_Chr8g0354241 29.023 348 234 6 14 355 33 373 4.91e-43 153
Msa0784340 MtrunA17_Chr3g0130391 31.230 317 205 5 24 333 44 354 5.87e-43 153
Msa0784340 MtrunA17_Chr7g0236011 32.479 351 217 10 14 355 33 372 7.60e-43 152
Msa0784340 MtrunA17_Chr1g0167951 31.073 354 227 8 7 355 13 354 2.60e-42 150
Msa0784340 MtrunA17_Chr3g0105281 33.333 309 164 9 40 337 25 302 5.37e-42 149
Msa0784340 MtrunA17_Chr2g0285931 31.366 322 188 12 36 337 6 314 4.02e-41 147
Msa0784340 MtrunA17_Chr4g0055591 29.545 352 222 8 14 355 25 360 2.38e-40 145
Msa0784340 MtrunA17_Chr8g0358941 30.960 323 188 11 33 337 9 314 3.49e-39 142
Msa0784340 MtrunA17_Chr4g0011311 32.342 269 168 7 12 277 31 288 2.24e-38 139
Msa0784340 MtrunA17_Chr3g0092531 33.221 298 188 8 49 344 6 294 6.36e-38 138
Msa0784340 MtrunA17_Chr8g0384481 29.154 319 209 8 49 358 59 369 1.56e-36 135
Msa0784340 MtrunA17_Chr4g0053251 30.690 290 174 7 47 315 6 289 2.96e-36 134
Msa0784340 MtrunA17_Chr4g0055911 33.443 305 180 10 45 336 5 299 1.24e-35 132
Msa0784340 MtrunA17_Chr4g0075471 47.244 127 65 1 212 336 28 154 1.44e-35 127
Msa0784340 MtrunA17_Chr1g0167931 28.612 353 200 8 7 355 13 317 1.73e-35 131
Msa0784340 MtrunA17_Chr5g0420881 40.559 143 85 0 213 355 1 143 7.03e-35 125
Msa0784340 MtrunA17_Chr7g0235981 33.455 275 170 4 87 355 59 326 1.62e-34 129
Msa0784340 MtrunA17_Chr2g0313111 28.617 311 188 12 40 337 17 306 4.54e-33 125
Msa0784340 MtrunA17_Chr4g0055871 32.459 305 178 11 45 336 5 294 8.47e-33 124
Msa0784340 MtrunA17_Chr6g0486831 30.945 307 185 11 51 336 20 320 1.87e-32 124
Msa0784340 MtrunA17_Chr8g0389941 30.877 285 173 9 72 336 51 331 1.99e-32 124
Msa0784340 MtrunA17_Chr3g0126761 38.506 174 105 2 165 338 43 214 4.07e-32 120
Msa0784340 MtrunA17_Chr4g0068891 27.974 311 204 8 34 337 5 302 2.51e-31 120
Msa0784340 MtrunA17_Chr1g0148771 29.293 297 188 9 44 336 58 336 4.45e-31 120
Msa0784340 MtrunA17_Chr8g0336801 41.379 145 81 2 214 355 12 155 5.04e-30 112
Msa0784340 MtrunA17_Chr4g0052251 28.520 277 182 11 72 337 43 314 3.75e-29 115
Msa0784340 MtrunA17_Chr5g0394071 36.571 175 100 4 168 341 4 168 7.52e-29 110
Msa0784340 MtrunA17_Chr8g0375661 35.294 153 97 2 11 162 14 165 1.07e-27 107
Msa0784340 MtrunA17_Chr7g0233661 44.275 131 66 2 211 341 19 142 1.13e-27 106
Msa0784340 MtrunA17_Chr8g0362741 30.483 269 158 9 12 277 31 273 1.19e-27 109
Msa0784340 MtrunA17_Chr4g0064771 33.333 162 107 1 167 328 27 187 1.40e-27 107
Msa0784340 MtrunA17_Chr8g0375641 34.356 163 99 3 11 169 14 172 3.61e-27 105
Msa0784340 MtrunA17_Chr1g0194321 28.923 325 193 13 37 337 4 314 4.45e-27 109
Msa0784340 MtrunA17_Chr4g0037611 39.024 164 88 5 176 337 1 154 1.47e-26 104
Msa0784340 MtrunA17_Chr5g0407781 26.117 291 198 5 48 337 4 278 5.88e-26 105
Msa0784340 MtrunA17_Chr8g0348951 28.664 307 193 10 46 339 2 295 7.84e-26 105
Msa0784340 MtrunA17_Chr5g0407731 27.148 291 193 6 49 337 33 306 2.63e-25 104
Msa0784340 MtrunA17_Chr8g0336831 31.579 190 124 3 45 233 56 240 1.39e-24 100
Msa0784340 MtrunA17_Chr1g0170631 32.990 194 123 4 165 355 2 191 3.76e-24 98.2
Msa0784340 MtrunA17_Chr1g0158011 32.000 175 114 4 164 335 68 240 1.06e-23 98.6
Msa0784340 MtrunA17_Chr4g0004061 29.141 326 194 12 44 347 4 314 8.25e-23 97.4
Msa0784340 MtrunA17_Chr8g0336871 34.831 178 104 4 177 351 1 169 6.16e-22 91.7
Msa0784340 MtrunA17_Chr8g0364171 40.351 114 65 2 164 277 16 126 7.46e-22 90.5
Msa0784340 MtrunA17_Chr7g0247741 28.462 260 162 9 74 324 30 274 2.01e-21 93.6
Msa0784340 MtrunA17_Chr4g0004071 27.036 307 206 9 44 343 4 299 5.85e-21 92.0
Msa0784340 MtrunA17_Chr1g0161101 47.573 103 43 3 208 309 401 493 3.14e-20 91.7
Msa0784340 MtrunA17_Chr8g0375581 57.812 64 27 0 210 273 22 85 3.26e-20 84.0
Msa0784340 MtrunA17_Chr5g0420891 30.065 153 102 2 14 166 12 159 5.82e-20 85.9
Msa0784340 MtrunA17_Chr1g0158021 27.039 233 156 6 40 269 40 261 7.04e-20 88.2
Msa0784340 MtrunA17_Chr1g0158031 32.716 162 100 5 178 335 3 159 1.23e-19 85.5
Msa0784340 MtrunA17_Chr3g0138351 24.918 305 198 7 49 336 7 297 4.83e-19 86.7
Msa0784340 MtrunA17_Chr3g0092581 32.468 154 99 4 191 343 16 165 1.28e-18 82.8
Msa0784340 MtrunA17_Chr2g0293931 32.335 167 102 7 180 337 22 186 4.67e-18 81.6
Msa0784340 MtrunA17_Chr4g0075431 33.333 162 86 6 49 204 4 149 1.73e-17 79.3
Msa0784340 MtrunA17_Chr8g0375591 34.513 113 74 0 14 126 11 123 2.39e-17 77.8
Msa0784340 MtrunA17_Chr4g0009561 23.718 312 206 10 43 336 1 298 1.84e-16 79.3
Msa0784340 MtrunA17_Chr4g0009541 23.311 296 204 7 70 354 29 312 3.62e-16 78.2
Msa0784340 MtrunA17_Chr8g0364161 34.091 132 78 4 14 141 33 159 4.38e-15 72.8
Msa0784340 MtrunA17_Chr1g0167921 39.450 109 63 2 168 276 51 156 5.34e-15 72.4
Msa0784340 MtrunA17_Chr7g0256741 27.476 313 207 13 49 351 10 312 9.47e-15 74.3
Msa0784340 MtrunA17_Chr2g0319521 33.036 112 72 2 166 277 16 124 1.40e-14 70.1
Msa0784340 MtrunA17_Chr7g0235991 30.405 148 97 3 49 195 21 163 1.79e-14 71.2
Msa0784340 MtrunA17_Chr2g0311611 41.667 72 34 2 213 277 1 71 7.31e-14 66.2
Msa0784340 MtrunA17_Chr8g0340641 22.901 262 187 5 63 309 80 341 2.15e-13 70.9
Msa0784340 MtrunA17_Chr8g0336791 29.412 136 92 2 45 179 56 188 2.16e-13 68.2
Msa0784340 MtrunA17_Chr7g0219991 33.019 106 68 1 167 272 249 351 3.35e-13 70.1
Msa0784340 MtrunA17_Chr7g0219991 30.612 147 90 4 24 166 15 153 8.61e-11 62.8
Msa0784340 MtrunA17_Chr1g0148781 24.739 287 185 11 70 340 34 305 4.23e-13 69.3
Msa0784340 MtrunA17_Chr2g0311641 30.147 136 88 3 14 147 22 152 1.68e-12 65.1
Msa0784340 MtrunA17_Chr4g0037601 37.805 82 49 1 31 112 24 103 5.13e-12 63.5
Msa0784340 MtrunA17_Chr2g0293941 40.244 82 38 3 48 128 18 89 4.62e-11 60.8
Msa0784340 MtrunA17_Chr1g0170641 28.477 151 98 6 19 166 18 161 8.02e-11 60.1
Msa0784340 MtrunA17_Chr2g0319531 30.909 110 67 4 41 145 31 136 9.82e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0784340 AT5G05600.1 68.258 356 113 0 3 358 16 371 0.0 510
Msa0784340 AT3G11180.1 68.715 358 104 2 5 358 47 400 0.0 510
Msa0784340 AT3G55970.1 66.295 359 116 3 5 358 5 363 2.16e-175 492
Msa0784340 AT3G11180.2 68.605 344 100 2 5 344 47 386 3.13e-175 493
Msa0784340 AT2G38240.1 58.571 350 138 3 7 354 5 349 1.17e-154 439
Msa0784340 AT5G05600.2 67.273 275 90 0 3 277 16 290 1.28e-137 393
Msa0784340 AT3G55970.2 67.626 278 85 3 5 277 5 282 1.63e-134 385
Msa0784340 AT4G10500.1 41.071 336 187 7 25 357 20 347 3.46e-80 249
Msa0784340 AT1G17020.1 35.897 351 221 3 7 355 9 357 9.32e-79 246
Msa0784340 AT4G10490.1 41.975 324 170 9 20 336 13 325 4.43e-78 243
Msa0784340 AT4G25300.1 35.484 341 217 2 15 355 18 355 1.61e-76 240
Msa0784340 AT1G78550.1 33.428 353 229 3 5 355 7 355 8.12e-76 238
Msa0784340 AT1G17010.1 35.028 354 220 6 7 355 9 357 9.77e-74 233
Msa0784340 AT5G24530.1 37.107 318 184 7 24 336 14 320 2.89e-71 226
Msa0784340 AT4G22880.1 36.467 351 203 7 14 352 7 349 3.05e-71 226
Msa0784340 AT4G22880.2 36.467 351 203 7 14 352 7 349 3.05e-71 226
Msa0784340 AT4G22880.3 36.467 351 203 7 14 352 7 349 3.05e-71 226
Msa0784340 AT3G21420.1 37.500 328 198 5 14 336 17 342 1.05e-70 225
Msa0784340 AT4G25310.1 35.569 343 211 6 15 355 18 352 1.35e-67 217
Msa0784340 AT4G16330.2 38.782 312 171 7 48 354 66 362 1.44e-67 217
Msa0784340 AT5G08640.2 36.697 327 196 5 14 336 6 325 1.64e-67 216
Msa0784340 AT5G08640.1 36.697 327 196 5 14 336 6 325 1.64e-67 216
Msa0784340 AT3G51240.1 38.065 310 184 6 28 335 18 321 3.88e-64 208
Msa0784340 AT3G13610.1 34.770 348 207 9 14 355 27 360 1.10e-63 207
Msa0784340 AT1G12010.1 35.127 316 191 6 43 356 1 304 1.50e-63 205
Msa0784340 AT3G60290.1 35.673 342 210 7 17 355 19 353 4.43e-62 202
Msa0784340 AT1G62380.1 36.949 295 173 5 43 336 1 283 4.59e-62 201
Msa0784340 AT1G78550.2 34.545 275 178 1 81 355 5 277 1.00e-61 199
Msa0784340 AT2G44800.1 36.170 329 198 8 16 340 18 338 8.13e-61 199
Msa0784340 AT1G05010.1 36.392 316 184 8 48 356 3 308 1.76e-60 197
Msa0784340 AT5G54000.2 35.404 322 199 6 23 339 17 334 1.65e-59 196
Msa0784340 AT5G20400.1 34.839 310 194 5 23 328 17 322 2.69e-59 195
Msa0784340 AT1G49390.1 36.140 285 180 2 48 332 44 326 4.89e-59 194
Msa0784340 AT2G36690.2 35.143 350 211 9 14 355 21 362 2.92e-58 193
Msa0784340 AT2G36690.1 35.143 350 211 9 14 355 21 362 2.92e-58 193
Msa0784340 AT1G77330.1 37.075 294 168 4 49 336 3 285 3.46e-58 191
Msa0784340 AT5G20550.1 33.866 313 194 5 23 328 17 323 2.70e-57 190
Msa0784340 AT1G55290.1 33.237 346 210 9 14 352 26 357 4.52e-57 190
Msa0784340 AT4G16330.1 40.392 255 141 5 104 354 9 256 1.74e-56 185
Msa0784340 AT3G19010.1 33.041 342 206 9 29 355 8 341 8.09e-56 186
Msa0784340 AT3G19010.4 33.041 342 206 9 29 355 8 341 8.09e-56 186
Msa0784340 AT3G19000.1 36.923 325 183 8 46 355 29 346 4.36e-55 184
Msa0784340 AT1G06650.2 34.844 353 209 8 14 355 26 368 6.73e-55 184
Msa0784340 AT4G25420.1 34.769 325 198 7 24 341 39 356 1.05e-54 184
Msa0784340 AT1G06620.1 34.384 349 211 7 14 355 27 364 1.15e-54 184
Msa0784340 AT3G12900.1 35.061 328 195 8 14 336 22 336 6.17e-54 181
Msa0784340 AT5G54000.1 37.500 256 157 2 85 339 1 254 6.44e-54 179
Msa0784340 AT2G19590.1 36.749 283 165 6 42 322 4 274 2.04e-53 179
Msa0784340 AT1G49390.2 36.694 248 156 1 85 332 1 247 7.07e-53 176
Msa0784340 AT1G06640.1 35.411 353 207 8 14 355 26 368 4.13e-52 177
Msa0784340 AT5G63600.1 30.744 309 197 5 34 336 12 309 3.99e-51 173
Msa0784340 AT5G43440.1 33.143 350 217 8 14 355 24 364 1.71e-50 172
Msa0784340 AT4G25310.2 32.092 349 197 8 11 355 12 324 2.40e-50 171
Msa0784340 AT5G63600.2 30.968 310 196 6 34 336 12 310 3.25e-50 171
Msa0784340 AT3G51240.2 41.102 236 133 4 102 335 6 237 7.89e-50 168
Msa0784340 AT5G63590.1 35.034 294 176 5 48 333 13 299 1.63e-49 169
Msa0784340 AT5G51810.1 31.395 344 205 9 25 356 42 366 3.71e-49 169
Msa0784340 AT2G30840.1 33.803 355 222 9 7 355 14 361 8.05e-49 168
Msa0784340 AT1G03410.2 35.329 334 194 10 14 336 20 342 3.71e-48 166
Msa0784340 AT5G07200.1 32.416 327 205 6 25 341 37 357 6.83e-48 166
Msa0784340 AT1G15550.1 34.343 297 178 6 45 336 53 337 7.55e-48 166
Msa0784340 AT1G03410.1 35.329 334 194 10 14 336 57 379 7.85e-48 167
Msa0784340 AT1G60980.1 32.523 329 199 8 23 339 34 351 1.36e-47 165
Msa0784340 AT1G04350.1 32.000 350 218 10 14 355 22 359 6.06e-47 163
Msa0784340 AT3G19010.3 30.994 342 183 9 29 355 8 311 1.94e-46 161
Msa0784340 AT5G43450.1 34.234 333 195 10 14 336 24 342 3.72e-46 161
Msa0784340 AT2G19590.2 37.903 248 143 5 77 322 21 259 5.25e-46 159
Msa0784340 AT5G59540.1 31.661 319 192 9 49 355 61 365 6.35e-46 160
Msa0784340 AT2G30840.3 33.521 355 217 10 7 355 14 355 2.00e-45 159
Msa0784340 AT5G59530.1 32.213 357 210 11 14 355 24 363 2.16e-45 159
Msa0784340 AT1G06645.1 33.144 353 212 8 14 355 39 378 3.32e-45 159
Msa0784340 AT1G80340.1 34.915 295 173 8 48 336 49 330 4.46e-45 158
Msa0784340 AT5G07480.1 32.239 335 207 7 15 340 14 337 4.95e-45 158
Msa0784340 AT1G44090.1 34.333 300 189 5 48 341 62 359 8.76e-45 158
Msa0784340 AT2G30830.1 32.849 344 214 8 12 349 19 351 1.70e-44 157
Msa0784340 AT5G12270.1 32.174 345 211 9 22 357 30 360 4.76e-44 155
Msa0784340 AT3G19000.2 37.652 247 133 7 46 277 29 269 2.96e-43 151
Msa0784340 AT1G80330.1 33.770 305 167 11 48 336 48 333 5.74e-43 152
Msa0784340 AT1G04380.1 33.010 309 188 8 49 351 45 340 2.30e-42 151
Msa0784340 AT3G61400.1 32.258 341 213 9 7 336 18 351 3.45e-42 151
Msa0784340 AT1G06650.1 34.799 273 167 5 14 282 26 291 1.48e-41 148
Msa0784340 AT4G25300.2 36.316 190 120 1 166 355 73 261 1.03e-40 144
Msa0784340 AT2G25450.1 30.986 355 219 11 12 355 19 358 1.60e-40 146
Msa0784340 AT5G63595.1 31.387 274 161 5 40 313 16 262 1.92e-40 144
Msa0784340 AT4G21200.1 31.715 309 176 10 38 337 32 314 1.93e-40 145
Msa0784340 AT1G03400.1 31.579 342 200 10 7 336 13 332 2.27e-40 145
Msa0784340 AT5G63580.2 36.207 232 137 4 48 277 18 240 8.02e-40 141
Msa0784340 AT1G06620.2 33.208 265 168 5 14 277 27 283 1.94e-39 141
Msa0784340 AT4G21690.1 30.363 303 187 8 45 336 43 332 2.65e-39 143
Msa0784340 AT4G25420.2 33.716 261 159 7 24 277 39 292 3.93e-39 141
Msa0784340 AT5G63580.1 35.776 232 138 4 46 275 16 238 4.51e-39 139
Msa0784340 AT3G19010.2 33.208 265 155 8 29 278 8 265 6.99e-39 140
Msa0784340 AT1G06640.2 35.821 268 161 5 14 277 26 286 8.93e-39 140
Msa0784340 AT1G30040.1 30.667 300 188 10 45 337 27 313 9.13e-39 141
Msa0784340 AT5G43935.1 31.544 298 166 8 46 336 16 282 1.53e-38 139
Msa0784340 AT1G06640.3 35.985 264 158 5 14 273 26 282 2.06e-38 139
Msa0784340 AT5G43440.2 33.333 270 168 6 14 279 24 285 2.39e-38 139
Msa0784340 AT1G78440.1 30.492 305 177 12 49 337 18 303 5.04e-38 139
Msa0784340 AT3G50210.4 32.707 266 161 8 66 315 32 295 1.24e-37 138
Msa0784340 AT3G50210.1 32.707 266 161 8 66 315 32 295 1.24e-37 138
Msa0784340 AT3G50210.3 32.707 266 161 8 66 315 32 295 1.24e-37 138
Msa0784340 AT2G30840.2 32.967 273 173 6 7 276 14 279 7.57e-36 132
Msa0784340 AT1G50960.1 28.896 308 199 8 34 337 24 315 1.03e-35 133
Msa0784340 AT5G51810.2 31.086 267 166 6 25 284 42 297 1.09e-35 132
Msa0784340 AT2G34555.1 30.303 297 186 11 49 338 27 309 4.10e-35 131
Msa0784340 AT1G03400.2 29.459 370 199 11 7 336 13 360 9.02e-35 131
Msa0784340 AT5G43450.2 33.829 269 159 8 14 276 24 279 9.64e-34 126
Msa0784340 AT3G49620.1 30.132 302 179 10 38 315 23 316 6.06e-33 126
Msa0784340 AT3G49630.1 29.897 291 172 10 49 315 9 291 1.41e-32 124
Msa0784340 AT3G49630.3 30.337 267 161 8 66 315 29 287 1.50e-32 124
Msa0784340 AT3G61400.2 31.655 278 176 7 7 277 18 288 5.19e-32 122
Msa0784340 AT5G59540.2 30.802 237 143 7 49 277 61 284 2.66e-31 120
Msa0784340 AT1G04380.2 33.047 233 142 6 49 279 45 265 3.05e-30 117
Msa0784340 AT3G46500.5 28.197 305 200 9 45 336 10 308 1.21e-29 116
Msa0784340 AT5G58660.1 32.203 295 161 11 48 316 33 314 2.03e-29 116
Msa0784340 AT4G23340.1 34.286 315 169 13 41 339 2 294 3.96e-29 115
Msa0784340 AT5G07480.2 35.079 191 111 3 158 340 43 228 6.28e-28 110
Msa0784340 AT3G46490.1 28.808 302 185 9 57 336 22 315 7.88e-28 111
Msa0784340 AT1G47990.1 28.115 313 188 11 42 337 8 300 3.24e-26 107
Msa0784340 AT1G02400.1 29.195 298 193 11 48 337 23 310 1.09e-25 105
Msa0784340 AT1G30040.2 30.000 240 148 10 45 277 27 253 1.40e-25 104
Msa0784340 AT3G46490.2 28.889 270 162 9 57 304 22 283 1.11e-24 102
Msa0784340 AT3G47190.1 28.378 296 182 9 30 310 11 291 4.00e-24 101
Msa0784340 AT3G50210.2 33.939 165 103 3 156 315 50 213 4.11e-24 99.8
Msa0784340 AT3G46500.7 28.470 281 172 12 45 307 10 279 7.68e-24 100
Msa0784340 AT3G49630.2 31.383 188 115 5 152 333 56 235 6.72e-23 96.7
Msa0784340 AT4G16765.6 30.493 223 142 6 125 336 15 235 2.03e-22 95.1
Msa0784340 AT4G16765.1 30.493 223 142 6 125 336 15 235 2.03e-22 95.1
Msa0784340 AT4G16765.2 30.493 223 142 6 125 336 15 235 2.03e-22 95.1
Msa0784340 AT5G58660.2 31.418 261 139 11 48 283 33 278 2.89e-22 95.5
Msa0784340 AT1G35190.1 31.061 264 157 11 72 314 29 288 5.72e-22 95.5
Msa0784340 AT1G14130.1 28.146 302 187 8 49 342 9 288 1.07e-21 94.4
Msa0784340 AT1G35190.2 31.679 262 135 11 72 314 29 265 1.87e-21 93.6
Msa0784340 AT4G16765.3 31.163 215 135 6 125 328 15 227 2.08e-21 92.0
Msa0784340 AT1G14120.2 27.815 302 175 8 42 328 1 274 5.40e-21 92.4
Msa0784340 AT1G14120.1 27.815 302 175 8 42 328 1 274 5.40e-21 92.4
Msa0784340 AT1G14120.3 27.815 302 175 8 42 328 1 274 5.40e-21 92.4
Msa0784340 AT5G51310.1 28.906 256 157 8 67 305 17 264 2.91e-20 90.5
Msa0784340 AT4G23340.2 37.500 176 101 6 171 339 3 176 1.66e-19 86.3
Msa0784340 AT4G16770.1 30.417 240 143 9 43 267 16 246 5.63e-18 83.2
Msa0784340 AT3G46500.10 29.101 189 124 5 156 336 48 234 8.79e-18 82.4
Msa0784340 AT3G46500.1 29.101 189 124 5 156 336 48 234 8.79e-18 82.4
Msa0784340 AT3G46500.4 29.885 174 114 4 169 336 1 172 1.05e-17 80.5
Msa0784340 AT4G03070.1 25.329 304 188 11 72 356 38 321 3.03e-17 82.0
Msa0784340 AT1G52820.1 24.062 320 213 9 49 356 12 313 5.16e-17 81.3
Msa0784340 AT1G28030.1 27.742 310 196 11 38 333 2 297 1.74e-16 79.7
Msa0784340 AT4G22870.1 39.796 98 55 2 246 339 2 99 2.69e-15 71.6
Msa0784340 AT4G16765.4 30.994 171 106 5 125 284 15 184 4.78e-15 73.2
Msa0784340 AT3G46480.1 27.500 280 170 10 63 331 6 263 6.06e-15 74.7
Msa0784340 AT4G16765.5 37.607 117 66 3 225 336 75 189 6.26e-15 73.2
Msa0784340 AT1G52800.1 25.836 329 214 12 39 356 1 310 6.55e-14 72.0
Msa0784340 AT4G22870.2 34.454 119 64 4 241 352 35 146 2.30e-13 67.4
Msa0784340 AT3G46500.3 28.834 163 100 7 156 307 48 205 1.70e-12 66.6
Msa0784340 AT3G46500.9 27.225 191 101 7 156 336 48 210 2.32e-12 66.2
Msa0784340 AT3G46500.6 29.530 149 91 6 168 307 31 174 6.03e-12 64.3
Msa0784340 AT3G46500.8 29.530 149 91 6 168 307 31 174 6.03e-12 64.3

Find 126 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTCCTGATTGGTAATT+TGG 0.047057 5_2:+68884422 Msa0784340:three_prime_UTR
ATCTTTGTACCCTCACTTTC+TGG 0.085591 5_2:-68884368 None:intergenic
CAATGTACATGAGTTATTTA+TGG 0.128633 5_2:+68884581 Msa0784340:three_prime_UTR
AAAGATTGAACTGGGATTAT+TGG 0.191708 5_2:-68880034 None:intergenic
CTCAATTGGAATGTCACTTT+TGG 0.194292 5_2:-68883914 None:intergenic
GTCAATTATTGGGATATTAT+TGG 0.196961 5_2:-68880143 None:intergenic
CTTCTCTGCCTCCCTCTTGC+AGG 0.218861 5_2:+68880482 Msa0784340:CDS
CCAGGGCAATGTTTGTAATA+TGG 0.229960 5_2:+68884495 Msa0784340:three_prime_UTR
GGCTTTACCAATTCCTTTGC+TGG 0.242234 5_2:-68883937 None:intergenic
AATGCATTTATTGTCAATAT+TGG 0.257707 5_2:+68882689 Msa0784340:CDS
AGGGAGGTGTTTGATGAATA+TGG 0.259252 5_2:+68882392 Msa0784340:intron
AAACCTCTAAGGTCAATTAT+TGG 0.261828 5_2:-68880154 None:intergenic
CTCTTCCTGATTGGTAATTT+GGG 0.268749 5_2:+68884423 Msa0784340:three_prime_UTR
CAACTCTGGCTGTGGACATT+TGG 0.276113 5_2:-68882546 None:intergenic
TTATCTTCCTTTGTCTTTGA+AGG 0.276389 5_2:+68880444 Msa0784340:CDS
AAGTTCGTAAAGGTGATAAT+TGG 0.282376 5_2:+68882645 Msa0784340:CDS
CTTAAATGTTGTTGTTAGAT+AGG 0.286203 5_2:+68884308 Msa0784340:three_prime_UTR
GGGTAAAGGGCAGGTTTATC+TGG 0.301600 5_2:-68883958 None:intergenic
AATTCCTTTGCTGGCTCAAT+TGG 0.304920 5_2:-68883928 None:intergenic
CAATATTGGTGATCAAATTC+AGG 0.308629 5_2:+68882703 Msa0784340:CDS
AACTCTGGCTGTGGACATTT+GGG 0.311428 5_2:-68882545 None:intergenic
AGTTGGTGTGCGTGTGAGTT+AGG 0.332532 5_2:-68879874 None:intergenic
CCACTTCTCAACCGATGATT+GGG 0.335482 5_2:+68884452 Msa0784340:three_prime_UTR
ATCCCAATAATTGACCTTAG+AGG 0.336722 5_2:+68880151 Msa0784340:CDS
CTATGACCTTTGATGAATAT+AGG 0.350688 5_2:+68883983 Msa0784340:CDS
CTTTCGGATAAAGATTGAAC+TGG 0.371330 5_2:-68880043 None:intergenic
GATTGAATCTATGCAACTTT+CGG 0.372204 5_2:-68880059 None:intergenic
AACCTCTAAGGTCAATTATT+GGG 0.373427 5_2:-68880153 None:intergenic
TCTAAAATAGAGTTTATTGA+TGG 0.387411 5_2:-68880115 None:intergenic
TAGTACTATGTAAACCTCTA+AGG 0.388602 5_2:-68880165 None:intergenic
CCCACTTCTCAACCGATGAT+TGG 0.393246 5_2:+68884451 Msa0784340:three_prime_UTR
CGGCTTGTGATTAAATGTTA+AGG 0.394115 5_2:-68884247 None:intergenic
TCCAAGATGATACGCATGTT+TGG 0.397662 5_2:+68884062 Msa0784340:exon
AGAAAGGTGCTATTCTTGAT+TGG 0.399483 5_2:+68880401 Msa0784340:CDS
GTGAGGTGAGTTTGTAGGTG+TGG 0.400935 5_2:-68879835 None:intergenic
AATTGAGCCAGCAAAGGAAT+TGG 0.401434 5_2:+68883930 Msa0784340:CDS
GATGTTTACCTCTTCCTGAT+TGG 0.404935 5_2:+68884414 Msa0784340:three_prime_UTR
ACAATAAATGCATTACGAAC+AGG 0.405344 5_2:-68882680 None:intergenic
GGAGGGTGAGGTGAGTTTGT+AGG 0.405857 5_2:-68879840 None:intergenic
GATGCATGCACCATGATTCC+AGG 0.407244 5_2:+68884477 Msa0784340:three_prime_UTR
TGAACTGGGATTATTGGTTC+AGG 0.411262 5_2:-68880028 None:intergenic
TAAAGGTGATAATTGGATTA+CGG 0.411535 5_2:+68882652 Msa0784340:CDS
AAGATTGCATGTGAAATTGA+TGG 0.412397 5_2:+68884386 Msa0784340:three_prime_UTR
ATCTAATAATATCAACTAGA+AGG 0.420236 5_2:-68884282 None:intergenic
AGCCTCAGAGATTTGCTTGA+AGG 0.421693 5_2:-68880209 None:intergenic
CAAACATTGCCCTGGAATCA+TGG 0.422370 5_2:-68884487 None:intergenic
TTGGTTCAGGCCAATCTTGT+GGG 0.423737 5_2:-68880015 None:intergenic
TGGTGTTAGCCATGATTTGA+TGG 0.425426 5_2:+68880267 Msa0784340:CDS
TCTATCTATAAACCTTGGAT+TGG 0.425871 5_2:+68882454 Msa0784340:CDS
CTGCAAGAGGGAGGCAGAGA+AGG 0.432067 5_2:-68880481 None:intergenic
AAATGATCAGCCCACAAGAT+TGG 0.435138 5_2:+68880005 Msa0784340:exon
AGACCATGTACTTGATCATC+TGG 0.440312 5_2:-68882620 None:intergenic
GGGGTTTGATATATCTTTGA+GGG 0.441698 5_2:-68880081 None:intergenic
TCCAAACATGCGTATCATCT+TGG 0.443109 5_2:-68884063 None:intergenic
AAGATATTGGTGCTTGCATA+AGG 0.450245 5_2:+68882510 Msa0784340:CDS
CCACAGCCAGAGTTGACTCT+TGG 0.456190 5_2:+68882554 Msa0784340:CDS
ATTGGTTCAGGCCAATCTTG+TGG 0.457991 5_2:-68880016 None:intergenic
TATGATTTGATGTAATGCTT+AGG 0.461018 5_2:+68884545 Msa0784340:three_prime_UTR
TGGATTTAGCTAAGGAAACT+TGG 0.461744 5_2:+68880287 Msa0784340:CDS
AAAGGTCATAGCAGGGTAAA+GGG 0.463621 5_2:-68883971 None:intergenic
CCCAATCATCGGTTGAGAAG+TGG 0.464312 5_2:-68884452 None:intergenic
GGAAAGAGAAAAGGAGGGTG+AGG 0.468511 5_2:-68879852 None:intergenic
TGATGAATATGGGATAGAAT+TGG 0.475949 5_2:+68882403 Msa0784340:CDS
GAAAATTCTCTTCCAATCCA+AGG 0.476253 5_2:-68882466 None:intergenic
TTCTAAGCAATGCAATCTAC+AGG 0.476607 5_2:+68883824 Msa0784340:CDS
CTCTGAGGCTTGTAAAGAGT+GGG 0.480774 5_2:+68880222 Msa0784340:CDS
CTTTGAAGGACTACAACAAA+TGG 0.482191 5_2:+68880458 Msa0784340:CDS
TATTCATCAAAGGTCATAGC+AGG 0.486350 5_2:-68883979 None:intergenic
GTTGGTGTGCGTGTGAGTTA+GGG 0.487166 5_2:-68879873 None:intergenic
GACTACCCAAATTACCAATC+AGG 0.492773 5_2:-68884428 None:intergenic
GGGAGGTGTTTGATGAATAT+GGG 0.498922 5_2:+68882393 Msa0784340:intron
AAAGTTCTATCTATAAACCT+TGG 0.499746 5_2:+68882449 Msa0784340:CDS
CAAAGGTCATAGCAGGGTAA+AGG 0.499854 5_2:-68883972 None:intergenic
TATAATTGTTTCACTTCCAT+AGG 0.501870 5_2:-68880328 None:intergenic
GTGAGTTAGGGAAAGAGAAA+AGG 0.502992 5_2:-68879861 None:intergenic
TAGCTAAATCCATCAAATCA+TGG 0.503472 5_2:-68880276 None:intergenic
AGTTAGGGAAAGAGAAAAGG+AGG 0.506173 5_2:-68879858 None:intergenic
TGAGGTGAGTTTGTAGGTGT+GGG 0.506190 5_2:-68879834 None:intergenic
ATCAATTAAGCCAGAAAGTG+AGG 0.518620 5_2:+68884358 Msa0784340:three_prime_UTR
TGATTTGATGGATTTAGCTA+AGG 0.519818 5_2:+68880279 Msa0784340:CDS
TTATCATCACACTCAGATCC+AGG 0.521719 5_2:+68882578 Msa0784340:CDS
TTATTGATGGACGGTCACTA+AGG 0.528777 5_2:-68880102 None:intergenic
CCAAATTACCAATCAGGAAG+AGG 0.532237 5_2:-68884422 None:intergenic
TTCTTTCAAATTGTTAACCA+TGG 0.533817 5_2:+68880247 Msa0784340:CDS
AGGGGTTTGATATATCTTTG+AGG 0.539325 5_2:-68880082 None:intergenic
AGTAGACTTGGTGTTAAGAA+AGG 0.539816 5_2:+68880385 Msa0784340:CDS
CCATATTACAAACATTGCCC+TGG 0.541395 5_2:-68884495 None:intergenic
TATTGATGGACGGTCACTAA+GGG 0.546407 5_2:-68880101 None:intergenic
CCAATCATCGGTTGAGAAGT+GGG 0.548694 5_2:-68884451 None:intergenic
GAAGGGTATGGTAGTAGACT+TGG 0.550629 5_2:+68880373 Msa0784340:CDS
GTCATAGCAGGGTAAAGGGC+AGG 0.551486 5_2:-68883967 None:intergenic
TTACCAGATGATCAAGTACA+TGG 0.559165 5_2:+68882617 Msa0784340:CDS
CCAAGAGTCAACTCTGGCTG+TGG 0.561608 5_2:-68882554 None:intergenic
GGGATTGTAGAAGAAAGCTA+AGG 0.562257 5_2:-68883893 None:intergenic
TTGTAGTCCTTCAAAGACAA+AGG 0.564851 5_2:-68880451 None:intergenic
GCATGCATCACCCCAATCAT+CGG 0.576316 5_2:-68884463 None:intergenic
GAAAAGCCTATATTCATCAA+AGG 0.580964 5_2:-68883989 None:intergenic
CATGGTCTTCAAGTTCGTAA+AGG 0.581161 5_2:+68882635 Msa0784340:CDS
TTTCGGATAAAGATTGAACT+GGG 0.585395 5_2:-68880042 None:intergenic
TCTCTGAGGCTTGTAAAGAG+TGG 0.589060 5_2:+68880221 Msa0784340:CDS
AAATAGAGTTTATTGATGGA+CGG 0.601584 5_2:-68880111 None:intergenic
CTAGAAGGAGGTTATATACA+CGG 0.608151 5_2:-68884267 None:intergenic
TAAGTACTTAAACCTGCAAG+AGG 0.610922 5_2:-68880494 None:intergenic
GTTAGGGAAAGAGAAAAGGA+GGG 0.612106 5_2:-68879857 None:intergenic
ATGCATGCACCATGATTCCA+GGG 0.616013 5_2:+68884478 Msa0784340:three_prime_UTR
AACAAAAGAGTAATGCCACC+TGG 0.618434 5_2:-68882596 None:intergenic
GATAAACCAAGAGTCAACTC+TGG 0.620386 5_2:-68882560 None:intergenic
TCAAATCATGGCTAACACCA+TGG 0.620406 5_2:-68880264 None:intergenic
CATTCCAATTGAGCCAGCAA+AGG 0.622477 5_2:+68883924 Msa0784340:CDS
TACTTAAACCTGCAAGAGGG+AGG 0.625938 5_2:-68880490 None:intergenic
GATACGCATGTTTGGATCAG+CGG 0.626422 5_2:+68884070 Msa0784340:exon
TGTTTATTTCTGTGTCAGTG+AGG 0.637444 5_2:+68884124 Msa0784340:three_prime_UTR
CACTTCTCAACCGATGATTG+GGG 0.638659 5_2:+68884453 Msa0784340:three_prime_UTR
TCAATTAAGCCAGAAAGTGA+GGG 0.644139 5_2:+68884359 Msa0784340:three_prime_UTR
ATTGATGGACGGTCACTAAG+GGG 0.650972 5_2:-68880100 None:intergenic
AGATATTGGTGCTTGCATAA+GGG 0.652882 5_2:+68882511 Msa0784340:CDS
AACCTTCAAGCAAATCTCTG+AGG 0.652889 5_2:+68880207 Msa0784340:CDS
AATTGGTGAAGTTATGTGAG+AGG 0.660567 5_2:+68882420 Msa0784340:CDS
TAATAATATCAACTAGAAGG+AGG 0.661177 5_2:-68884279 None:intergenic
CAATCATCGGTTGAGAAGTG+GGG 0.663077 5_2:-68884450 None:intergenic
ATTCATCAAAGGTCATAGCA+GGG 0.668718 5_2:-68883978 None:intergenic
AAGTACTTAAACCTGCAAGA+GGG 0.673362 5_2:-68880493 None:intergenic
TCTGAGGCTTGTAAAGAGTG+GGG 0.685796 5_2:+68880223 Msa0784340:CDS
ATTAGAATGAGGGGTCCATG+TGG 0.696122 5_2:+68884012 Msa0784340:CDS
AGTGCTCTAATATAAATGTG+TGG 0.746903 5_2:-68879940 None:intergenic
TCATCACACTCAGATCCAGG+TGG 0.758978 5_2:+68882581 Msa0784340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTCTTATTGATAATGTT+TGG + chr5_2:68882744-68882763 Msa0784340:intron 15.0%
!!! ATAGTATTACGATTTTAAAT+GGG + chr5_2:68882979-68882998 Msa0784340:intron 15.0%
!! CTTAATTATATATGATTGTT+AGG - chr5_2:68883555-68883574 None:intergenic 15.0%
!!! TTAAATTTTCTTGTAAGAGT+TGG - chr5_2:68879894-68879913 None:intergenic 20.0%
!!! TCTAAAATAGAGTTTATTGA+TGG - chr5_2:68880118-68880137 None:intergenic 20.0%
!! TTAGCAAAGAAAATTAGTTA+TGG + chr5_2:68880539-68880558 Msa0784340:intron 20.0%
!! CGAAATGCATAAATTTATTA+TGG + chr5_2:68880744-68880763 Msa0784340:intron 20.0%
!!! TTCATCTATTTTGTCAAATA+GGG - chr5_2:68880961-68880980 None:intergenic 20.0%
!! AATAGATGAAGTATACAATT+TGG + chr5_2:68880971-68880990 Msa0784340:intron 20.0%
!! AAAAAATGTTTAGTCAGTTT+GGG + chr5_2:68881422-68881441 Msa0784340:intron 20.0%
!! AAATTTAGAGATTAAAGAGT+TGG - chr5_2:68882275-68882294 None:intergenic 20.0%
!!! AATTTTCTTCAAAATGCTTT+TGG + chr5_2:68882482-68882501 Msa0784340:CDS 20.0%
!! AATGCATTTATTGTCAATAT+TGG + chr5_2:68882689-68882708 Msa0784340:CDS 20.0%
!!! CATAGTATTACGATTTTAAA+TGG + chr5_2:68882978-68882997 Msa0784340:intron 20.0%
!! TTGTAAAGTTTAGAAAATCA+CGG - chr5_2:68883508-68883527 None:intergenic 20.0%
!! ACAAATCATTCATACTTATA+TGG - chr5_2:68883725-68883744 None:intergenic 20.0%
!!! TGTTTATTTTGTGTTTGATA+AGG + chr5_2:68883801-68883820 Msa0784340:intron 20.0%
!! ATCTAATAATATCAACTAGA+AGG - chr5_2:68884285-68884304 None:intergenic 20.0%
! AAATAGAGTTTATTGATGGA+CGG - chr5_2:68880114-68880133 None:intergenic 25.0%
! GTCAATTATTGGGATATTAT+TGG - chr5_2:68880146-68880165 None:intergenic 25.0%
! TTCTTTCAAATTGTTAACCA+TGG + chr5_2:68880247-68880266 Msa0784340:CDS 25.0%
! TATAATTGTTTCACTTCCAT+AGG - chr5_2:68880331-68880350 None:intergenic 25.0%
! TTTGAATTGTGTACATACAA+CGG + chr5_2:68880924-68880943 Msa0784340:intron 25.0%
!! CTTCATCTATTTTGTCAAAT+AGG - chr5_2:68880962-68880981 None:intergenic 25.0%
! ATCTCTTCATTTGTTCAATT+TGG - chr5_2:68881128-68881147 None:intergenic 25.0%
!!! CAAACTGACTAAACATTTTT+TGG - chr5_2:68881423-68881442 None:intergenic 25.0%
! CAAAAAATGTTTAGTCAGTT+TGG + chr5_2:68881421-68881440 Msa0784340:intron 25.0%
! CTTTGTAAAGAATTCATTGA+TGG - chr5_2:68881489-68881508 None:intergenic 25.0%
! TTGAGAAATAGGTAGAAATT+AGG - chr5_2:68881564-68881583 None:intergenic 25.0%
!! ATCATTGAGTCTTTTGTTAA+GGG - chr5_2:68881594-68881613 None:intergenic 25.0%
!! AATCATTGAGTCTTTTGTTA+AGG - chr5_2:68881595-68881614 None:intergenic 25.0%
! CTTAGAAAATTAAAGGCTAA+GGG - chr5_2:68881683-68881702 None:intergenic 25.0%
! GAAGATCCTTAGAAAATTAA+AGG - chr5_2:68881690-68881709 None:intergenic 25.0%
! ATTTAGATACAAAAGGTTGA+GGG - chr5_2:68881846-68881865 None:intergenic 25.0%
! TATTTAGATACAAAAGGTTG+AGG - chr5_2:68881847-68881866 None:intergenic 25.0%
!! TTAGGGTATTTAGATACAAA+AGG - chr5_2:68881853-68881872 None:intergenic 25.0%
! ATGAATCTCATGAAAATCAA+AGG - chr5_2:68881885-68881904 None:intergenic 25.0%
!!! ATGATTTTGGTTCATAAATC+GGG - chr5_2:68882089-68882108 None:intergenic 25.0%
!!! CATGATTTTGGTTCATAAAT+CGG - chr5_2:68882090-68882109 None:intergenic 25.0%
!!! TTTGTATTTTAGCAAAAACG+TGG - chr5_2:68882134-68882153 None:intergenic 25.0%
!!! TCTATTGAATTGTCATTTTG+TGG + chr5_2:68882334-68882353 Msa0784340:intron 25.0%
!!! CTATTGAATTGTCATTTTGT+GGG + chr5_2:68882335-68882354 Msa0784340:intron 25.0%
! AAGGATACAAATTTGAATGT+AGG + chr5_2:68882372-68882391 Msa0784340:intron 25.0%
! AGGATACAAATTTGAATGTA+GGG + chr5_2:68882373-68882392 Msa0784340:intron 25.0%
! AAAGTTCTATCTATAAACCT+TGG + chr5_2:68882449-68882468 Msa0784340:CDS 25.0%
! TAAAGGTGATAATTGGATTA+CGG + chr5_2:68882652-68882671 Msa0784340:CDS 25.0%
!!! TTGTTATTCGTCAGATTTTT+TGG + chr5_2:68882866-68882885 Msa0784340:intron 25.0%
! AATGAGATGTATCTTTCAAA+AGG - chr5_2:68882902-68882921 None:intergenic 25.0%
! TTACAGTCACAAATTAACTT+AGG - chr5_2:68883242-68883261 None:intergenic 25.0%
! ATTTATTGGTCAACATACAT+AGG - chr5_2:68883292-68883311 None:intergenic 25.0%
! AGTATCTTGCTTTCATTTAT+TGG - chr5_2:68883306-68883325 None:intergenic 25.0%
! ACGAAAGTTTAGTCATTTAT+GGG - chr5_2:68883580-68883599 None:intergenic 25.0%
! TACGAAAGTTTAGTCATTTA+TGG - chr5_2:68883581-68883600 None:intergenic 25.0%
! TTATCATAGATGCAATTCTT+AGG - chr5_2:68883644-68883663 None:intergenic 25.0%
! ATCATTCATACTTATATGGA+AGG - chr5_2:68883721-68883740 None:intergenic 25.0%
!! GAGTTTTACAAAATCATAGT+AGG - chr5_2:68884219-68884238 None:intergenic 25.0%
! TAATAATATCAACTAGAAGG+AGG - chr5_2:68884282-68884301 None:intergenic 25.0%
!! CTTAAATGTTGTTGTTAGAT+AGG + chr5_2:68884308-68884327 Msa0784340:three_prime_UTR 25.0%
! TATGATTTGATGTAATGCTT+AGG + chr5_2:68884545-68884564 Msa0784340:three_prime_UTR 25.0%
! CAATGTACATGAGTTATTTA+TGG + chr5_2:68884581-68884600 Msa0784340:three_prime_UTR 25.0%
AGTGCTCTAATATAAATGTG+TGG - chr5_2:68879943-68879962 None:intergenic 30.0%
AAAGATTGAACTGGGATTAT+TGG - chr5_2:68880037-68880056 None:intergenic 30.0%
TTTCGGATAAAGATTGAACT+GGG - chr5_2:68880045-68880064 None:intergenic 30.0%
GATTGAATCTATGCAACTTT+CGG - chr5_2:68880062-68880081 None:intergenic 30.0%
!! AACCTCTAAGGTCAATTATT+GGG - chr5_2:68880156-68880175 None:intergenic 30.0%
!! AAACCTCTAAGGTCAATTAT+TGG - chr5_2:68880157-68880176 None:intergenic 30.0%
TAGTACTATGTAAACCTCTA+AGG - chr5_2:68880168-68880187 None:intergenic 30.0%
TAGCTAAATCCATCAAATCA+TGG - chr5_2:68880279-68880298 None:intergenic 30.0%
!! TGATTTGATGGATTTAGCTA+AGG + chr5_2:68880279-68880298 Msa0784340:CDS 30.0%
!!! TCAATTTTTTCACTTGCCTA+TGG + chr5_2:68880312-68880331 Msa0784340:CDS 30.0%
AACTCACCAAAAACTTATGA+AGG + chr5_2:68880355-68880374 Msa0784340:CDS 30.0%
ACTCACCAAAAACTTATGAA+GGG + chr5_2:68880356-68880375 Msa0784340:CDS 30.0%
TTATCTTCCTTTGTCTTTGA+AGG + chr5_2:68880444-68880463 Msa0784340:CDS 30.0%
ATGGATCATTTCGATATACA+TGG + chr5_2:68880763-68880782 Msa0784340:intron 30.0%
TGGATCATTTCGATATACAT+GGG + chr5_2:68880764-68880783 Msa0784340:intron 30.0%
ACAAGCTACAAAAATAGTAG+AGG - chr5_2:68880809-68880828 None:intergenic 30.0%
!! TTTGTAGCTTGTTCATTAAG+AGG + chr5_2:68880817-68880836 Msa0784340:intron 30.0%
TTGAATTGTGTACATACAAC+GGG + chr5_2:68880925-68880944 Msa0784340:intron 30.0%
! ATCTATTTTGTCAAATAGGG+CGG - chr5_2:68880958-68880977 None:intergenic 30.0%
! TATTCTTTGATTCGATTGTG+AGG - chr5_2:68881365-68881384 None:intergenic 30.0%
! AGAATTCATTGATGGTAAAG+CGG - chr5_2:68881481-68881500 None:intergenic 30.0%
! GTAGAAATTAGGTTTGTTCT+TGG - chr5_2:68881553-68881572 None:intergenic 30.0%
! TCATTGAGTCTTTTGTTAAG+GGG - chr5_2:68881593-68881612 None:intergenic 30.0%
! TCTAGAGTTGAGAAACAATT+GGG - chr5_2:68881637-68881656 None:intergenic 30.0%
!! TTCTAGAGTTGAGAAACAAT+TGG - chr5_2:68881638-68881657 None:intergenic 30.0%
CCTTAGAAAATTAAAGGCTA+AGG - chr5_2:68881684-68881703 None:intergenic 30.0%
!! CCTTAGCCTTTAATTTTCTA+AGG + chr5_2:68881681-68881700 Msa0784340:intron 30.0%
!! TTTCTAAGGATCTTCTCTTT+TGG + chr5_2:68881695-68881714 Msa0784340:intron 30.0%
!!! AAAAAGTTGGTGCCTTTTAA+AGG - chr5_2:68881758-68881777 None:intergenic 30.0%
! ATCAAAGGAGGGAATTTTTA+GGG - chr5_2:68881870-68881889 None:intergenic 30.0%
! AATCAAAGGAGGGAATTTTT+AGG - chr5_2:68881871-68881890 None:intergenic 30.0%
ATCTCATGAAAATCAAAGGA+GGG - chr5_2:68881881-68881900 None:intergenic 30.0%
AATCTCATGAAAATCAAAGG+AGG - chr5_2:68881882-68881901 None:intergenic 30.0%
CTTACTCAACAAATTAGTCA+AGG + chr5_2:68881909-68881928 Msa0784340:intron 30.0%
ACATGAAATTGTTGCATGAT+TGG - chr5_2:68881984-68882003 None:intergenic 30.0%
GTTTGTTTCAACAAAAAACG+TGG - chr5_2:68882067-68882086 None:intergenic 30.0%
GTGGGTAACATTAATACTTA+AGG + chr5_2:68882353-68882372 Msa0784340:intron 30.0%
ATACAAATTTGAATGTAGGG+AGG + chr5_2:68882376-68882395 Msa0784340:intron 30.0%
TGATGAATATGGGATAGAAT+TGG + chr5_2:68882403-68882422 Msa0784340:CDS 30.0%
TCTATCTATAAACCTTGGAT+TGG + chr5_2:68882454-68882473 Msa0784340:CDS 30.0%
! TTTCTTCAAAATGCTTTTGG+AGG + chr5_2:68882485-68882504 Msa0784340:CDS 30.0%
AAGTTCGTAAAGGTGATAAT+TGG + chr5_2:68882645-68882664 Msa0784340:CDS 30.0%
ACAATAAATGCATTACGAAC+AGG - chr5_2:68882683-68882702 None:intergenic 30.0%
! CAATATTGGTGATCAAATTC+AGG + chr5_2:68882703-68882722 Msa0784340:CDS 30.0%
!!! TATTCGTCAGATTTTTTGGA+TGG + chr5_2:68882870-68882889 Msa0784340:intron 30.0%
TACATAGGATAAGTTGTGAT+TGG - chr5_2:68883277-68883296 None:intergenic 30.0%
TGTATGATTAGTATCACGAT+GGG + chr5_2:68883458-68883477 Msa0784340:intron 30.0%
! TATCATTGATGATACTTGAG+AGG + chr5_2:68883673-68883692 Msa0784340:intron 30.0%
!!! TCAATTGGAATGTCACTTTT+GGG - chr5_2:68883916-68883935 None:intergenic 30.0%
CTATGACCTTTGATGAATAT+AGG + chr5_2:68883983-68884002 Msa0784340:CDS 30.0%
GAAAAGCCTATATTCATCAA+AGG - chr5_2:68883992-68884011 None:intergenic 30.0%
! ATAGGCTTTTCATTAGAATG+AGG + chr5_2:68884001-68884020 Msa0784340:CDS 30.0%
! TAGGCTTTTCATTAGAATGA+GGG + chr5_2:68884002-68884021 Msa0784340:CDS 30.0%
AAGATTGCATGTGAAATTGA+TGG + chr5_2:68884386-68884405 Msa0784340:three_prime_UTR 30.0%
CTTTCGGATAAAGATTGAAC+TGG - chr5_2:68880046-68880065 None:intergenic 35.0%
GGGGTTTGATATATCTTTGA+GGG - chr5_2:68880084-68880103 None:intergenic 35.0%
AGGGGTTTGATATATCTTTG+AGG - chr5_2:68880085-68880104 None:intergenic 35.0%
ATCCCAATAATTGACCTTAG+AGG + chr5_2:68880151-68880170 Msa0784340:CDS 35.0%
!!! AGGTTGAAGCTTTTTCATGT+GGG - chr5_2:68880192-68880211 None:intergenic 35.0%
!!! AAGGTTGAAGCTTTTTCATG+TGG - chr5_2:68880193-68880212 None:intergenic 35.0%
TGGATTTAGCTAAGGAAACT+TGG + chr5_2:68880287-68880306 Msa0784340:CDS 35.0%
! CCATACCCTTCATAAGTTTT+TGG - chr5_2:68880364-68880383 None:intergenic 35.0%
CCAAAAACTTATGAAGGGTA+TGG + chr5_2:68880361-68880380 Msa0784340:CDS 35.0%
!! AGTAGACTTGGTGTTAAGAA+AGG + chr5_2:68880385-68880404 Msa0784340:CDS 35.0%
!! AGAAAGGTGCTATTCTTGAT+TGG + chr5_2:68880401-68880420 Msa0784340:CDS 35.0%
TTGTAGTCCTTCAAAGACAA+AGG - chr5_2:68880454-68880473 None:intergenic 35.0%
! CTTTGAAGGACTACAACAAA+TGG + chr5_2:68880458-68880477 Msa0784340:CDS 35.0%
AAGTACTTAAACCTGCAAGA+GGG - chr5_2:68880496-68880515 None:intergenic 35.0%
TAAGTACTTAAACCTGCAAG+AGG - chr5_2:68880497-68880516 None:intergenic 35.0%
CATCGTCACAAATTCAATGA+CGG + chr5_2:68880587-68880606 Msa0784340:intron 35.0%
!! TAGCTTGTTCATTAAGAGGT+AGG + chr5_2:68880821-68880840 Msa0784340:intron 35.0%
TTCATTAAGAGGTAGGTAGT+TGG + chr5_2:68880828-68880847 Msa0784340:intron 35.0%
TTTCCATAGTAGGTCATTGT+CGG - chr5_2:68881448-68881467 None:intergenic 35.0%
! AGAGATCTCTTTTCCATAGT+AGG - chr5_2:68881458-68881477 None:intergenic 35.0%
TCAATGATTTCACTCAGTCA+AGG + chr5_2:68881606-68881625 Msa0784340:intron 35.0%
GAAAATTAAAGGCTAAGGGT+TGG - chr5_2:68881679-68881698 None:intergenic 35.0%
CACAAAGACTCTCCTTTAAA+AGG + chr5_2:68881743-68881762 Msa0784340:intron 35.0%
AAACTTCAAGATGTGAATCC+TGG - chr5_2:68881806-68881825 None:intergenic 35.0%
TTTCAACAAAAAACGTGGCA+TGG - chr5_2:68882062-68882081 None:intergenic 35.0%
TCAAACCTTATCACACTTAG+TGG + chr5_2:68882194-68882213 Msa0784340:intron 35.0%
CAAACCTTATCACACTTAGT+GGG + chr5_2:68882195-68882214 Msa0784340:intron 35.0%
AATTGGTGAAGTTATGTGAG+AGG + chr5_2:68882420-68882439 Msa0784340:CDS 35.0%
GAAAATTCTCTTCCAATCCA+AGG - chr5_2:68882469-68882488 None:intergenic 35.0%
! AAGATATTGGTGCTTGCATA+AGG + chr5_2:68882510-68882529 Msa0784340:CDS 35.0%
! AGATATTGGTGCTTGCATAA+GGG + chr5_2:68882511-68882530 Msa0784340:CDS 35.0%
TTACCAGATGATCAAGTACA+TGG + chr5_2:68882617-68882636 Msa0784340:CDS 35.0%
!!! TCAGATTTTTTGGATGGTTG+TGG + chr5_2:68882876-68882895 Msa0784340:intron 35.0%
! TTAGGAAAGTAAAAGCACGA+TGG - chr5_2:68883224-68883243 None:intergenic 35.0%
CGTGATACTAATCATACACT+TGG - chr5_2:68883456-68883475 None:intergenic 35.0%
GTGTATGATTAGTATCACGA+TGG + chr5_2:68883457-68883476 Msa0784340:intron 35.0%
TTCTAAGCAATGCAATCTAC+AGG + chr5_2:68883824-68883843 Msa0784340:CDS 35.0%
!!! CTCAATTGGAATGTCACTTT+TGG - chr5_2:68883917-68883936 None:intergenic 35.0%
ATTCATCAAAGGTCATAGCA+GGG - chr5_2:68883981-68884000 None:intergenic 35.0%
TATTCATCAAAGGTCATAGC+AGG - chr5_2:68883982-68884001 None:intergenic 35.0%
! AGGCTTTTCATTAGAATGAG+GGG + chr5_2:68884003-68884022 Msa0784340:CDS 35.0%
! TCAACTTGAGATTTTCCACA+TGG - chr5_2:68884030-68884049 None:intergenic 35.0%
!! TGTTTATTTCTGTGTCAGTG+AGG + chr5_2:68884124-68884143 Msa0784340:three_prime_UTR 35.0%
CGGCTTGTGATTAAATGTTA+AGG - chr5_2:68884250-68884269 None:intergenic 35.0%
CTAGAAGGAGGTTATATACA+CGG - chr5_2:68884270-68884289 None:intergenic 35.0%
ATCAATTAAGCCAGAAAGTG+AGG + chr5_2:68884358-68884377 Msa0784340:three_prime_UTR 35.0%
TCAATTAAGCCAGAAAGTGA+GGG + chr5_2:68884359-68884378 Msa0784340:three_prime_UTR 35.0%
! CTCTTCCTGATTGGTAATTT+GGG + chr5_2:68884423-68884442 Msa0784340:three_prime_UTR 35.0%
GTTAGGGAAAGAGAAAAGGA+GGG - chr5_2:68879860-68879879 None:intergenic 40.0%
AGTTAGGGAAAGAGAAAAGG+AGG - chr5_2:68879861-68879880 None:intergenic 40.0%
GTGAGTTAGGGAAAGAGAAA+AGG - chr5_2:68879864-68879883 None:intergenic 40.0%
AAATGATCAGCCCACAAGAT+TGG + chr5_2:68880005-68880024 Msa0784340:exon 40.0%
!! TGAACTGGGATTATTGGTTC+AGG - chr5_2:68880031-68880050 None:intergenic 40.0%
! TATTGATGGACGGTCACTAA+GGG - chr5_2:68880104-68880123 None:intergenic 40.0%
! TTATTGATGGACGGTCACTA+AGG - chr5_2:68880105-68880124 None:intergenic 40.0%
AACCTTCAAGCAAATCTCTG+AGG + chr5_2:68880207-68880226 Msa0784340:CDS 40.0%
TCAAATCATGGCTAACACCA+TGG - chr5_2:68880267-68880286 None:intergenic 40.0%
! TGGTGTTAGCCATGATTTGA+TGG + chr5_2:68880267-68880286 Msa0784340:CDS 40.0%
ATATACATGGGTGATGTGCT+AGG + chr5_2:68880776-68880795 Msa0784340:intron 40.0%
AGGGGAAGAGATTGAGAAAT+AGG - chr5_2:68881575-68881594 None:intergenic 40.0%
!!! CTAAGGGTTGGTTCTCTTTT+GGG - chr5_2:68881667-68881686 None:intergenic 40.0%
ACAAAAGGTTGAGGGTCTTT+GGG - chr5_2:68881838-68881857 None:intergenic 40.0%
TACAAAAGGTTGAGGGTCTT+TGG - chr5_2:68881839-68881858 None:intergenic 40.0%
AAATCGTGGCATGATTTGAC+AGG - chr5_2:68881958-68881977 None:intergenic 40.0%
TGCATGATTGGAACAAATCG+TGG - chr5_2:68881972-68881991 None:intergenic 40.0%
AACAAAAAACGTGGCATGGA+GGG - chr5_2:68882058-68882077 None:intergenic 40.0%
! GAGAAATCGTGGCATGATTT+TGG - chr5_2:68882102-68882121 None:intergenic 40.0%
!! AGGGAGGTGTTTGATGAATA+TGG + chr5_2:68882392-68882411 Msa0784340:intron 40.0%
!! GGGAGGTGTTTGATGAATAT+GGG + chr5_2:68882393-68882412 Msa0784340:intron 40.0%
!! GCTTTTGGAGGTGAAGATAT+TGG + chr5_2:68882497-68882516 Msa0784340:CDS 40.0%
GATAAACCAAGAGTCAACTC+TGG - chr5_2:68882563-68882582 None:intergenic 40.0%
TTATCATCACACTCAGATCC+AGG + chr5_2:68882578-68882597 Msa0784340:CDS 40.0%
AACAAAAGAGTAATGCCACC+TGG - chr5_2:68882599-68882618 None:intergenic 40.0%
AGACCATGTACTTGATCATC+TGG - chr5_2:68882623-68882642 None:intergenic 40.0%
! CATGGTCTTCAAGTTCGTAA+AGG + chr5_2:68882635-68882654 Msa0784340:CDS 40.0%
TGATGCATGAATCTGTCACA+TGG + chr5_2:68882785-68882804 Msa0784340:intron 40.0%
TCTTAACCCTGTAGCAATGT+GGG - chr5_2:68883148-68883167 None:intergenic 40.0%
TTCTTAACCCTGTAGCAATG+TGG - chr5_2:68883149-68883168 None:intergenic 40.0%
ACATTGCTACAGGGTTAAGA+AGG + chr5_2:68883148-68883167 Msa0784340:intron 40.0%
CTACAGGGTTAAGAAGGATA+GGG + chr5_2:68883154-68883173 Msa0784340:intron 40.0%
GGATAAGTTGTGATTGGTAG+AGG - chr5_2:68883271-68883290 None:intergenic 40.0%
!! GTCATGCAAAAGCATTGCAA+TGG + chr5_2:68883415-68883434 Msa0784340:intron 40.0%
GGGATTGTAGAAGAAAGCTA+AGG - chr5_2:68883896-68883915 None:intergenic 40.0%
!! AATTCCTTTGCTGGCTCAAT+TGG - chr5_2:68883931-68883950 None:intergenic 40.0%
AATTGAGCCAGCAAAGGAAT+TGG + chr5_2:68883930-68883949 Msa0784340:CDS 40.0%
AAAGGTCATAGCAGGGTAAA+GGG - chr5_2:68883974-68883993 None:intergenic 40.0%
TCCAAGATGATACGCATGTT+TGG + chr5_2:68884062-68884081 Msa0784340:exon 40.0%
TCCAAACATGCGTATCATCT+TGG - chr5_2:68884066-68884085 None:intergenic 40.0%
ATCTTTGTACCCTCACTTTC+TGG - chr5_2:68884371-68884390 None:intergenic 40.0%
GATGTTTACCTCTTCCTGAT+TGG + chr5_2:68884414-68884433 Msa0784340:three_prime_UTR 40.0%
CCAAATTACCAATCAGGAAG+AGG - chr5_2:68884425-68884444 None:intergenic 40.0%
! CCTCTTCCTGATTGGTAATT+TGG + chr5_2:68884422-68884441 Msa0784340:three_prime_UTR 40.0%
GACTACCCAAATTACCAATC+AGG - chr5_2:68884431-68884450 None:intergenic 40.0%
CCATATTACAAACATTGCCC+TGG - chr5_2:68884498-68884517 None:intergenic 40.0%
CCAGGGCAATGTTTGTAATA+TGG + chr5_2:68884495-68884514 Msa0784340:three_prime_UTR 40.0%
TTGGTTCAGGCCAATCTTGT+GGG - chr5_2:68880018-68880037 None:intergenic 45.0%
! ATTGGTTCAGGCCAATCTTG+TGG - chr5_2:68880019-68880038 None:intergenic 45.0%
! ATTGATGGACGGTCACTAAG+GGG - chr5_2:68880103-68880122 None:intergenic 45.0%
! AGCCTCAGAGATTTGCTTGA+AGG - chr5_2:68880212-68880231 None:intergenic 45.0%
!! TCTCTGAGGCTTGTAAAGAG+TGG + chr5_2:68880221-68880240 Msa0784340:CDS 45.0%
!! CTCTGAGGCTTGTAAAGAGT+GGG + chr5_2:68880222-68880241 Msa0784340:CDS 45.0%
! TCTGAGGCTTGTAAAGAGTG+GGG + chr5_2:68880223-68880242 Msa0784340:CDS 45.0%
! GAAGGGTATGGTAGTAGACT+TGG + chr5_2:68880373-68880392 Msa0784340:CDS 45.0%
TACTTAAACCTGCAAGAGGG+AGG - chr5_2:68880493-68880512 None:intergenic 45.0%
!!! GCTAAGGGTTGGTTCTCTTT+TGG - chr5_2:68881668-68881687 None:intergenic 45.0%
AGGGACTCTTGGGAAAAAGT+TGG - chr5_2:68881771-68881790 None:intergenic 45.0%
! TTCCCAAGAGTCCCTTCTTT+TGG + chr5_2:68881776-68881795 Msa0784340:intron 45.0%
AGCCAAAAGAAGGGACTCTT+GGG - chr5_2:68881781-68881800 None:intergenic 45.0%
ATCCTGGAGAGCCAAAAGAA+GGG - chr5_2:68881790-68881809 None:intergenic 45.0%
AATCCTGGAGAGCCAAAAGA+AGG - chr5_2:68881791-68881810 None:intergenic 45.0%
CAACAAAAAACGTGGCATGG+AGG - chr5_2:68882059-68882078 None:intergenic 45.0%
AGCAAAAACGTGGCACGATT+TGG - chr5_2:68882124-68882143 None:intergenic 45.0%
CCAACCCACTAAGTGTGATA+AGG - chr5_2:68882202-68882221 None:intergenic 45.0%
! CCTTATCACACTTAGTGGGT+TGG + chr5_2:68882199-68882218 Msa0784340:intron 45.0%
AACTCTGGCTGTGGACATTT+GGG - chr5_2:68882548-68882567 None:intergenic 45.0%
TGCATGAATCTGTCACATGG+AGG + chr5_2:68882788-68882807 Msa0784340:intron 45.0%
ACATTTGCCCACATTGCTAC+AGG + chr5_2:68883138-68883157 Msa0784340:intron 45.0%
CATTTGCCCACATTGCTACA+GGG + chr5_2:68883139-68883158 Msa0784340:intron 45.0%
GCTACAGGGTTAAGAAGGAT+AGG + chr5_2:68883153-68883172 Msa0784340:intron 45.0%
CATTCCAATTGAGCCAGCAA+AGG + chr5_2:68883924-68883943 Msa0784340:CDS 45.0%
GGCTTTACCAATTCCTTTGC+TGG - chr5_2:68883940-68883959 None:intergenic 45.0%
CAAAGGTCATAGCAGGGTAA+AGG - chr5_2:68883975-68883994 None:intergenic 45.0%
ATTAGAATGAGGGGTCCATG+TGG + chr5_2:68884012-68884031 Msa0784340:CDS 45.0%
GATACGCATGTTTGGATCAG+CGG + chr5_2:68884070-68884089 Msa0784340:exon 45.0%
! CAATCATCGGTTGAGAAGTG+GGG - chr5_2:68884453-68884472 None:intergenic 45.0%
! CCAATCATCGGTTGAGAAGT+GGG - chr5_2:68884454-68884473 None:intergenic 45.0%
CCACTTCTCAACCGATGATT+GGG + chr5_2:68884452-68884471 Msa0784340:three_prime_UTR 45.0%
CACTTCTCAACCGATGATTG+GGG + chr5_2:68884453-68884472 Msa0784340:three_prime_UTR 45.0%
ATGCATGCACCATGATTCCA+GGG + chr5_2:68884478-68884497 Msa0784340:three_prime_UTR 45.0%
CAAACATTGCCCTGGAATCA+TGG - chr5_2:68884490-68884509 None:intergenic 45.0%
!!! TGAATTTATTATTATTTTTT+TGG + chr5_2:68880720-68880739 Msa0784340:intron 5.0%
GGAAAGAGAAAAGGAGGGTG+AGG - chr5_2:68879855-68879874 None:intergenic 50.0%
GTTGGTGTGCGTGTGAGTTA+GGG - chr5_2:68879876-68879895 None:intergenic 50.0%
! AGTTGGTGTGCGTGTGAGTT+AGG - chr5_2:68879877-68879896 None:intergenic 50.0%
!! GGTTGGTTCTCTTTTGGGAG+TGG - chr5_2:68881662-68881681 None:intergenic 50.0%
GAGCCAAAAGAAGGGACTCT+TGG - chr5_2:68881782-68881801 None:intergenic 50.0%
! GGCACGATTTGGAGAAATCG+TGG - chr5_2:68882113-68882132 None:intergenic 50.0%
CAACTCTGGCTGTGGACATT+TGG - chr5_2:68882549-68882568 None:intergenic 50.0%
TCATCACACTCAGATCCAGG+TGG + chr5_2:68882581-68882600 Msa0784340:CDS 50.0%
GAGGCGACACATGATGAAGT+TGG + chr5_2:68882807-68882826 Msa0784340:intron 50.0%
CAGCATGCACACACACAAAG+TGG + chr5_2:68883111-68883130 Msa0784340:intron 50.0%
GGGTAAAGGGCAGGTTTATC+TGG - chr5_2:68883961-68883980 None:intergenic 50.0%
CCCACTTCTCAACCGATGAT+TGG + chr5_2:68884451-68884470 Msa0784340:three_prime_UTR 50.0%
! CCCAATCATCGGTTGAGAAG+TGG - chr5_2:68884455-68884474 None:intergenic 50.0%
GCATGCATCACCCCAATCAT+CGG - chr5_2:68884466-68884485 None:intergenic 50.0%
GATGCATGCACCATGATTCC+AGG + chr5_2:68884477-68884496 Msa0784340:three_prime_UTR 50.0%
GGAGGGTGAGGTGAGTTTGT+AGG - chr5_2:68879843-68879862 None:intergenic 55.0%
GGGCCGACAATGACCTACTA+TGG + chr5_2:68881442-68881461 Msa0784340:intron 55.0%
!!! GTCCCTTCTTTTGGCTCTCC+AGG + chr5_2:68881785-68881804 Msa0784340:intron 55.0%
CCAAGAGTCAACTCTGGCTG+TGG - chr5_2:68882557-68882576 None:intergenic 55.0%
! CCACAGCCAGAGTTGACTCT+TGG + chr5_2:68882554-68882573 Msa0784340:CDS 55.0%
GTCATAGCAGGGTAAAGGGC+AGG - chr5_2:68883970-68883989 None:intergenic 55.0%
CTGCAAGAGGGAGGCAGAGA+AGG - chr5_2:68880484-68880503 None:intergenic 60.0%
CTTCTCTGCCTCCCTCTTGC+AGG + chr5_2:68880482-68880501 Msa0784340:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 68879837 68884611 68879837 ID=Msa0784340;Name=Msa0784340
chr5_2 mRNA 68879837 68884611 68879837 ID=Msa0784340-mRNA-1;Parent=Msa0784340;Name=Msa0784340-mRNA-1;_AED=0.14;_eAED=0.14;_QI=170|1|1|1|1|1|3|540|358
chr5_2 exon 68879837 68880503 68879837 ID=Msa0784340-mRNA-1:exon:20658;Parent=Msa0784340-mRNA-1
chr5_2 exon 68882394 68882724 68882394 ID=Msa0784340-mRNA-1:exon:20659;Parent=Msa0784340-mRNA-1
chr5_2 exon 68883823 68884611 68883823 ID=Msa0784340-mRNA-1:exon:20660;Parent=Msa0784340-mRNA-1
chr5_2 five_prime_UTR 68879837 68880006 68879837 ID=Msa0784340-mRNA-1:five_prime_utr;Parent=Msa0784340-mRNA-1
chr5_2 CDS 68880007 68880503 68880007 ID=Msa0784340-mRNA-1:cds;Parent=Msa0784340-mRNA-1
chr5_2 CDS 68882394 68882724 68882394 ID=Msa0784340-mRNA-1:cds;Parent=Msa0784340-mRNA-1
chr5_2 CDS 68883823 68884071 68883823 ID=Msa0784340-mRNA-1:cds;Parent=Msa0784340-mRNA-1
chr5_2 three_prime_UTR 68884072 68884611 68884072 ID=Msa0784340-mRNA-1:three_prime_utr;Parent=Msa0784340-mRNA-1
Gene Sequence

>Msa0784340

ATGATCAGCCCACAAGATTGGCCTGAACCAATAATCCCAGTTCAATCTTTATCCGAAAGTTGCATAGATTCAATCCCTCAAAGATATATCAAACCCCTTAGTGACCGTCCATCAATAAACTCTATTTTAGAAACAACCAATAATATCCCAATAATTGACCTTAGAGGTTTACATAGTACTAACCCACATGAAAAAGCTTCAACCTTCAAGCAAATCTCTGAGGCTTGTAAAGAGTGGGGATTCTTTCAAATTGTTAACCATGGTGTTAGCCATGATTTGATGGATTTAGCTAAGGAAACTTGGCGTCAATTTTTTCACTTGCCTATGGAAGTGAAACAATTATATGCAAACTCACCAAAAACTTATGAAGGGTATGGTAGTAGACTTGGTGTTAAGAAAGGTGCTATTCTTGATTGGAGTGATTACTATTATCTTCATTATCTTCCTTTGTCTTTGAAGGACTACAACAAATGGCCTTCTCTGCCTCCCTCTTGCAGGGAGGTGTTTGATGAATATGGGATAGAATTGGTGAAGTTATGTGAGAGGTTGATGAAAGTTCTATCTATAAACCTTGGATTGGAAGAGAATTTTCTTCAAAATGCTTTTGGAGGTGAAGATATTGGTGCTTGCATAAGGGTGAATTATTTTCCCAAATGTCCACAGCCAGAGTTGACTCTTGGTTTATCATCACACTCAGATCCAGGTGGCATTACTCTTTTGTTACCAGATGATCAAGTACATGGTCTTCAAGTTCGTAAAGGTGATAATTGGATTACGGTGAAACCTGTTCGTAATGCATTTATTGTCAATATTGGTGATCAAATTCAGGTTCTAAGCAATGCAATCTACAGGAGTGTAGAGCATAGAGTACTAGCAAACTCACACAAAGAAAGAGTTTCCTTAGCTTTCTTCTACAATCCCAAAAGTGACATTCCAATTGAGCCAGCAAAGGAATTGGTAAAGCCAGATAAACCTGCCCTTTACCCTGCTATGACCTTTGATGAATATAGGCTTTTCATTAGAATGAGGGGTCCATGTGGAAAATCTCAAGTTGAATCTTTAAAATCTCCAAGATGA
Protein sequence

>Msa0784340

MISPQDWPEPIIPVQSLSESCIDSIPQRYIKPLSDRPSINSILETTNNIPIIDLRGLHSTNPHEKASTFKQISEACKEWGFFQIVNHGVSHDLMDLAKETWRQFFHLPMEVKQLYANSPKTYEGYGSRLGVKKGAILDWSDYYYLHYLPLSLKDYNKWPSLPPSCREVFDEYGIELVKLCERLMKVLSINLGLEENFLQNAFGGEDIGACIRVNYFPKCPQPELTLGLSSHSDPGGITLLLPDDQVHGLQVRKGDNWITVKPVRNAFIVNIGDQIQVLSNAIYRSVEHRVLANSHKERVSLAFFYNPKSDIPIEPAKELVKPDKPALYPAMTFDEYRLFIRMRGPCGKSQVESLKSPR*