AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1223990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223990 MtrunA17_Chr4g0076051 96.742 399 13 0 1 399 1 399 0.0 801
Msa1223990 MtrunA17_Chr2g0278181 97.419 310 8 0 90 399 1 310 0.0 626
Msa1223990 MtrunA17_Chr2g0290131 69.786 374 109 3 25 396 29 400 0.0 530
Msa1223990 MtrunA17_Chr7g0234191 42.448 384 196 8 15 389 66 433 5.13e-97 296
Msa1223990 MtrunA17_Chr3g0101961 41.713 362 196 8 25 381 26 377 7.34e-87 268
Msa1223990 MtrunA17_Chr5g0447771 33.854 384 229 8 25 393 60 433 2.22e-65 214
Msa1223990 MtrunA17_Chr5g0444651 32.558 387 228 11 6 372 13 386 7.15e-59 197
Msa1223990 MtrunA17_Chr8g0347591 37.234 188 105 5 188 371 199 377 1.09e-31 124
Msa1223990 MtrunA17_Chr8g0338731 34.021 194 121 5 1 194 8 194 1.38e-25 103
Msa1223990 MtrunA17_Chr7g0275621 28.289 304 193 9 87 384 101 385 1.36e-24 104
Msa1223990 MtrunA17_Chr7g0261921 36.220 127 78 1 90 213 1 127 3.27e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223990 AT5G47530.1 53.281 381 162 7 14 388 16 386 3.51e-136 395
Msa1223990 AT4G17280.1 50.508 394 174 7 1 386 10 390 4.44e-131 382
Msa1223990 AT5G35735.1 46.766 402 191 8 5 395 9 398 8.21e-118 348
Msa1223990 AT3G25290.1 44.267 375 189 8 15 378 18 383 9.47e-105 315
Msa1223990 AT3G25290.2 44.267 375 189 8 15 378 18 383 9.47e-105 315
Msa1223990 AT4G12980.1 44.020 393 198 8 2 382 6 388 6.18e-100 303
Msa1223990 AT3G59070.1 41.161 379 197 11 3 367 6 372 6.00e-84 264
Msa1223990 AT2G04850.1 35.263 380 221 9 29 392 27 397 1.62e-68 222
Msa1223990 AT5G48750.1 43.404 235 123 5 17 247 26 254 1.33e-57 189
Msa1223990 AT3G07570.1 29.888 358 190 13 4 333 9 333 2.64e-30 120
Msa1223990 AT3G61750.2 33.871 186 115 4 167 352 100 277 1.90e-28 114
Msa1223990 AT3G61750.1 33.871 186 115 4 167 352 177 354 3.79e-28 114
Msa1223990 AT3G07390.1 33.679 193 117 6 9 199 36 219 2.11e-23 99.0
Msa1223990 AT3G07390.2 38.182 110 63 3 15 123 40 145 7.53e-16 75.1
Msa1223990 AT5G54830.1 26.768 198 128 7 153 342 635 823 3.13e-11 65.9

Find 121 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGACCCCTTTGTATATTT+TGG 0.071146 8_1:-88623668 Msa1223990:three_prime_UTR
TCCATTAGTTATCCTGTTTC+TGG 0.137764 8_1:-88625115 Msa1223990:CDS
CATGCTTACATTGGTATTAT+TGG 0.155934 8_1:-88623894 Msa1223990:CDS
CTATACTTACCATGGCTTAA+AGG 0.170712 8_1:+88623748 None:intergenic
GAAGTCTTGGATCTTGTTTC+TGG 0.179617 8_1:-88624932 Msa1223990:CDS
GCCTACATAGTTGGATTATC+TGG 0.214774 8_1:-88624185 Msa1223990:CDS
CATTGGTATTATTGGTGCTT+TGG 0.218211 8_1:-88623886 Msa1223990:CDS
CCAAGACTTCCTTAGAGTTT+TGG 0.257990 8_1:+88624945 None:intergenic
ATCATTATTGTAACGTTCTC+TGG 0.273084 8_1:-88623465 Msa1223990:three_prime_UTR
GTTTGTAATGCTAATGCTTA+TGG 0.273236 8_1:+88623977 None:intergenic
ATGTTTGAAGTATATGCTTT+TGG 0.274313 8_1:+88625169 None:intergenic
ATTGGTATTATTGGTGCTTT+GGG 0.280623 8_1:-88623885 Msa1223990:CDS
ATTCTTCAATGGGTTGCTTT+TGG 0.313612 8_1:+88625550 None:intergenic
TCCAAATGGAACAACCTCTT+TGG 0.315874 8_1:-88625038 Msa1223990:CDS
AAGACTTCAGATGGTGTTAA+TGG 0.319234 8_1:-88623795 Msa1223990:CDS
CTGGAATAACTGCAACAAAT+AGG 0.325023 8_1:-88625285 Msa1223990:CDS
CTTTGTTGTTTGAGAATGTT+TGG 0.332596 8_1:+88625404 None:intergenic
GCCAATCCCACTTGCAGCTT+GGG 0.336349 8_1:+88624904 None:intergenic
ATAGTTGGATTATCTGGTTT+TGG 0.338557 8_1:-88624179 Msa1223990:CDS
CTCAACTTATGGTCTTTGTT+TGG 0.344950 8_1:+88624041 None:intergenic
TCCAGTAAAATCTCAACTTA+TGG 0.345086 8_1:+88624030 None:intergenic
TATACTTACCATGGCTTAAA+GGG 0.345394 8_1:+88623749 None:intergenic
CAACAAATAGGTGGGTTGCT+TGG 0.346817 8_1:-88625273 Msa1223990:CDS
AAGGGTGCTGCTTGGATTGA+TGG 0.347392 8_1:+88625249 None:intergenic
ACCAAAGAGGTTGTTCCATT+TGG 0.348727 8_1:+88625037 None:intergenic
GCTTGTGCTCCGATCATGGC+TGG 0.356922 8_1:+88625223 None:intergenic
TAGGGGATCGTTACAAGAAC+TGG 0.360418 8_1:-88623920 Msa1223990:CDS
AACAAATAGGTGGGTTGCTT+GGG 0.381341 8_1:-88625272 Msa1223990:CDS
GCTTTATGTAAATTCTTCAA+TGG 0.381557 8_1:+88625539 None:intergenic
CAACACCTTTCTTCGGTTTG+TGG 0.386786 8_1:-88623439 Msa1223990:three_prime_UTR
TAATGATATTTGAAACTTCA+AGG 0.391491 8_1:+88623481 None:intergenic
CTGGGAGCAACACCTTTCTT+CGG 0.393940 8_1:-88623446 Msa1223990:three_prime_UTR
CAAGTCTCTGCCTACATAGT+TGG 0.397780 8_1:-88624194 Msa1223990:CDS
AATATCTACCACCACGTTGT+AGG 0.399297 8_1:-88624008 Msa1223990:CDS
AATTCTAAATGCAATAAGTT+GGG 0.400187 8_1:-88624309 Msa1223990:CDS
TTTCAAAGGGTTTGAAGCAT+TGG 0.401125 8_1:-88623952 Msa1223990:CDS
TGGTTCATGTATGGCAAGAT+GGG 0.403428 8_1:-88625018 Msa1223990:CDS
TTGGTTCATGTATGGCAAGA+TGG 0.409548 8_1:-88625019 Msa1223990:CDS
ATCTTCTCACCAAAACTCTA+AGG 0.410472 8_1:-88624954 Msa1223990:CDS
TTCAAAGGGTTTGAAGCATT+GGG 0.410583 8_1:-88623951 Msa1223990:CDS
CAACCTCTTTGGTTCATGTA+TGG 0.419802 8_1:-88625027 Msa1223990:CDS
CTTTATGTAAATTCTTCAAT+GGG 0.423723 8_1:+88625540 None:intergenic
TTTGGGCTTCCACTGGCTTG+TGG 0.428919 8_1:+88625187 None:intergenic
TGCTATTGTTCTTGTAACCT+TGG 0.433426 8_1:-88624096 Msa1223990:CDS
ACCAGAAACAGGATAACTAA+TGG 0.433626 8_1:+88625114 None:intergenic
CCAAAACTCTAAGGAAGTCT+TGG 0.434557 8_1:-88624945 Msa1223990:CDS
CAAAGCTTGTGCTCCGATCA+TGG 0.437700 8_1:+88625219 None:intergenic
GAATTCTAAATGCAATAAGT+TGG 0.439356 8_1:-88624310 Msa1223990:CDS
TGGGGAATCTTGATGCCAAC+AGG 0.450699 8_1:-88624290 Msa1223990:CDS
TCCCAAGCTGCAAGTGGGAT+TGG 0.452511 8_1:-88624905 Msa1223990:CDS
GCTGGGTCAAGGGTGCTGCT+TGG 0.458703 8_1:+88625241 None:intergenic
TGGTATTATTGGTGCTTTGG+GGG 0.460113 8_1:-88623883 Msa1223990:CDS
CTTTAAGCCATGGTAAGTAT+AGG 0.461741 8_1:-88623747 Msa1223990:exon
GTGGCAGACAAACCAGAAAC+AGG 0.463187 8_1:+88625103 None:intergenic
GCTACTTTGACCCTTCCAAA+TGG 0.468426 8_1:-88625052 Msa1223990:CDS
CATGATCGGAGCACAAGCTT+TGG 0.470343 8_1:-88625218 Msa1223990:CDS
ATATCTACCACCACGTTGTA+GGG 0.487362 8_1:-88624007 Msa1223990:CDS
TCCGATCATGGCTGGGTCAA+GGG 0.488469 8_1:+88625231 None:intergenic
CTCCGATCATGGCTGGGTCA+AGG 0.489759 8_1:+88625230 None:intergenic
GGTATTATTGGTGCTTTGGG+GGG 0.491041 8_1:-88623882 Msa1223990:CDS
TCAAATCCGCAGACCCTGCT+TGG 0.493088 8_1:-88624238 Msa1223990:CDS
ACCCTTGACCCAGCCATGAT+CGG 0.495736 8_1:-88625232 Msa1223990:CDS
AAGAGGTTGTTCCATTTGGA+AGG 0.497441 8_1:+88625041 None:intergenic
GATCGGAGCACAAGCTTTGG+TGG 0.497818 8_1:-88625215 Msa1223990:CDS
TTCTTCTACCCTTTAAGCCA+TGG 0.507836 8_1:-88623757 Msa1223990:exon
GAGTACCCAAAATATACAAA+GGG 0.515639 8_1:+88623662 None:intergenic
TTGGTATTATTGGTGCTTTG+GGG 0.518620 8_1:-88623884 Msa1223990:CDS
ATGTGAAGATAGAACCAAGC+AGG 0.523540 8_1:+88624224 None:intergenic
TCATTATTGTAACGTTCTCT+GGG 0.531140 8_1:-88623464 Msa1223990:three_prime_UTR
TTTGGTACTGGTCTCAAACT+CGG 0.532870 8_1:-88624161 Msa1223990:CDS
TTTGGAAGCTTACACGTGGA+TGG 0.533911 8_1:-88623847 Msa1223990:CDS
AGTTAACCTCGTACCTCCAC+TGG 0.539955 8_1:-88625354 Msa1223990:CDS
TCCACGTGTAAGCTTCCAAA+AGG 0.545026 8_1:+88623850 None:intergenic
CTTGTGCTCCGATCATGGCT+GGG 0.548227 8_1:+88625224 None:intergenic
GAATAACTGCAACAAATAGG+TGG 0.552346 8_1:-88625282 Msa1223990:CDS
AGTAATAGCAAGGTATATGA+AGG 0.552758 8_1:-88624264 Msa1223990:CDS
CAACGTAAGCCTCAACATGA+TGG 0.558574 8_1:+88625489 None:intergenic
CTTGCTATTACTGCTCCTGT+TGG 0.560569 8_1:+88624275 None:intergenic
GATTCATGGCTATGTTCTTG+AGG 0.562296 8_1:+88624974 None:intergenic
GTTAATGGAGCAAATAGCTA+TGG 0.568663 8_1:-88623780 Msa1223990:CDS
AACTGGAAGCATGCTTACAT+TGG 0.570819 8_1:-88623903 Msa1223990:CDS
GGTTCATGTATGGCAAGATG+GGG 0.572736 8_1:-88625017 Msa1223990:CDS
CATCATTCCTATACTTACCA+TGG 0.573016 8_1:+88623740 None:intergenic
ACCAGATAATCCAACTATGT+AGG 0.573850 8_1:+88624184 None:intergenic
ATTCTAAATGCAATAAGTTG+GGG 0.575819 8_1:-88624308 Msa1223990:CDS
AGAGTACCCAAAATATACAA+AGG 0.577577 8_1:+88623661 None:intergenic
AGAGGTTGTTCCATTTGGAA+GGG 0.580852 8_1:+88625042 None:intergenic
GCAGAGAACAAGACTTCAGA+TGG 0.581792 8_1:-88623804 Msa1223990:CDS
CAAACTCGGTAGTGATTCAG+AGG 0.584270 8_1:-88624147 Msa1223990:CDS
AATCCCACTTGCAGCTTGGG+AGG 0.585410 8_1:+88624907 None:intergenic
TACATAAAGCAAAGAGAAGG+AGG 0.587618 8_1:-88625526 Msa1223990:five_prime_UTR
CATCATGTTGAGGCTTACGT+TGG 0.594673 8_1:-88625488 Msa1223990:exon
TTAGTTTAATACAATATGAG+AGG 0.595901 8_1:+88625656 None:intergenic
GGTACCTCCCAAGCTGCAAG+TGG 0.604136 8_1:-88624911 Msa1223990:CDS
GTGGCTATTCCACAAGCCAG+TGG 0.609291 8_1:-88625196 Msa1223990:CDS
AATAACTGCAACAAATAGGT+GGG 0.611835 8_1:-88625281 Msa1223990:CDS
ATTTACATAAAGCAAAGAGA+AGG 0.614377 8_1:-88625529 Msa1223990:five_prime_UTR
TTGTTTCATCGTATGACCAG+TGG 0.615698 8_1:+88625338 None:intergenic
ACAAGCACACGGTTGCAAGA+AGG 0.618408 8_1:-88625139 Msa1223990:CDS
GACATAGCATACATACACAC+TGG 0.619673 8_1:-88625304 Msa1223990:CDS
TAGTTTAATACAATATGAGA+GGG 0.623159 8_1:+88625657 None:intergenic
AAACACTTGAAGAGTTGCCA+AGG 0.625483 8_1:+88624079 None:intergenic
TTGCCATACATGAACCAAAG+AGG 0.632447 8_1:+88625024 None:intergenic
CAACAGGAGCAGTAATAGCA+AGG 0.639419 8_1:-88624274 Msa1223990:CDS
ATACAATATGAGAGGGACAG+AGG 0.641017 8_1:+88625664 None:intergenic
TTTCATCGTATGACCAGTGG+AGG 0.641448 8_1:+88625341 None:intergenic
TGTGAAGATAGAACCAAGCA+GGG 0.656540 8_1:+88624225 None:intergenic
ATAGAACCAAGCAGGGTCTG+CGG 0.662307 8_1:+88624232 None:intergenic
AACCTCATTATTCTGATACG+TGG 0.667735 8_1:+88625084 None:intergenic
GTACCTCCCAAGCTGCAAGT+GGG 0.668450 8_1:-88624910 Msa1223990:CDS
TGGAGGTACGAGGTTAACTG+TGG 0.671548 8_1:+88625358 None:intergenic
TGGTCATACGATGAAACAAG+TGG 0.675142 8_1:-88625334 Msa1223990:CDS
TGCCACGTATCAGAATAATG+AGG 0.677711 8_1:-88625086 Msa1223990:CDS
ACATTGTAGACACAAGCACA+CGG 0.692248 8_1:-88625150 Msa1223990:CDS
ACATGATTGAGTTTGAGCTG+AGG 0.702084 8_1:+88625432 None:intergenic
TATGCTACTCAAAACACACA+AGG 0.702224 8_1:+88625465 None:intergenic
GTATGACCAGTGGAGGTACG+AGG 0.705546 8_1:+88625348 None:intergenic
AAACTCGGTAGTGATTCAGA+GGG 0.706199 8_1:-88624146 Msa1223990:CDS
AGTACCCAAAATATACAAAG+GGG 0.710749 8_1:+88623663 None:intergenic
TAACATACCCTACAACGTGG+TGG 0.753877 8_1:+88624000 None:intergenic
TGGTAACATACCCTACAACG+TGG 0.797593 8_1:+88623997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTAAATAAAGTTCT+AGG + chr8_1:88624510-88624529 None:intergenic 10.0%
!!! AATTTTTTAAATAAAGTTCT+AGG + chr8_1:88624510-88624529 None:intergenic 10.0%
!! AAATATTTATAATGATCCAA+CGG + chr8_1:88624305-88624324 None:intergenic 15.0%
!! AAATATTTATAATGATCCAA+CGG + chr8_1:88624305-88624324 None:intergenic 15.0%
!! TAGTTTAATACAATATGAGA+GGG + chr8_1:88623445-88623464 None:intergenic 20.0%
!! TTAGTTTAATACAATATGAG+AGG + chr8_1:88623446-88623465 None:intergenic 20.0%
!!! TTTTTGAGAACAAATTCAAA+GGG + chr8_1:88623516-88623535 None:intergenic 20.0%
!! CTTTATGTAAATTCTTCAAT+GGG + chr8_1:88623562-88623581 None:intergenic 20.0%
!! CACGACATAATTTATAAAAT+TGG + chr8_1:88624686-88624705 None:intergenic 20.0%
!! GTGTTAGTACTTTATAATTA+GGG - chr8_1:88624703-88624722 Msa1223990:intron 20.0%
!! AATTCTAAATGCAATAAGTT+GGG - chr8_1:88624790-88624809 Msa1223990:intron 20.0%
!!! TAATGATATTTGAAACTTCA+AGG + chr8_1:88625621-88625640 None:intergenic 20.0%
!! TAGTTTAATACAATATGAGA+GGG + chr8_1:88623445-88623464 None:intergenic 20.0%
!! TTAGTTTAATACAATATGAG+AGG + chr8_1:88623446-88623465 None:intergenic 20.0%
!!! TTTTTGAGAACAAATTCAAA+GGG + chr8_1:88623516-88623535 None:intergenic 20.0%
!! CTTTATGTAAATTCTTCAAT+GGG + chr8_1:88623562-88623581 None:intergenic 20.0%
!! CACGACATAATTTATAAAAT+TGG + chr8_1:88624686-88624705 None:intergenic 20.0%
!! GTGTTAGTACTTTATAATTA+GGG - chr8_1:88624703-88624722 Msa1223990:intron 20.0%
!! AATTCTAAATGCAATAAGTT+GGG - chr8_1:88624790-88624809 Msa1223990:intron 20.0%
!!! TAATGATATTTGAAACTTCA+AGG + chr8_1:88625621-88625640 None:intergenic 20.0%
!!! GTTTTTGAGAACAAATTCAA+AGG + chr8_1:88623517-88623536 None:intergenic 25.0%
! TTCTCAAAAACCCATTAATT+TGG - chr8_1:88623526-88623545 Msa1223990:three_prime_UTR 25.0%
! GCTTTATGTAAATTCTTCAA+TGG + chr8_1:88623563-88623582 None:intergenic 25.0%
! ATTTACATAAAGCAAAGAGA+AGG - chr8_1:88623570-88623589 Msa1223990:three_prime_UTR 25.0%
!!! TGTTTGAAGTATATGCTTTT+GGG + chr8_1:88623932-88623951 None:intergenic 25.0%
!!! ATGTTTGAAGTATATGCTTT+TGG + chr8_1:88623933-88623952 None:intergenic 25.0%
!! TGTAAGTTCATACTGTTTTA+AGG - chr8_1:88624238-88624257 Msa1223990:CDS 25.0%
! ACTCTCTATTATCAAGAATT+TGG + chr8_1:88624430-88624449 None:intergenic 25.0%
! AACAGGATAATACAATCATA+TGG + chr8_1:88624558-88624577 None:intergenic 25.0%
! TATGATTGTATTATCCTGTT+TGG - chr8_1:88624558-88624577 Msa1223990:intron 25.0%
! CGTGTTAGTACTTTATAATT+AGG - chr8_1:88624702-88624721 Msa1223990:intron 25.0%
!! ATTCTTAATTTTCAGACACA+TGG - chr8_1:88624767-88624786 Msa1223990:intron 25.0%
! GAATTCTAAATGCAATAAGT+TGG - chr8_1:88624789-88624808 Msa1223990:intron 25.0%
! ATTCTAAATGCAATAAGTTG+GGG - chr8_1:88624791-88624810 Msa1223990:intron 25.0%
!!! GTTTTTGAGAACAAATTCAA+AGG + chr8_1:88623517-88623536 None:intergenic 25.0%
! TTCTCAAAAACCCATTAATT+TGG - chr8_1:88623526-88623545 Msa1223990:three_prime_UTR 25.0%
! GCTTTATGTAAATTCTTCAA+TGG + chr8_1:88623563-88623582 None:intergenic 25.0%
! ATTTACATAAAGCAAAGAGA+AGG - chr8_1:88623570-88623589 Msa1223990:three_prime_UTR 25.0%
!!! TGTTTGAAGTATATGCTTTT+GGG + chr8_1:88623932-88623951 None:intergenic 25.0%
!!! ATGTTTGAAGTATATGCTTT+TGG + chr8_1:88623933-88623952 None:intergenic 25.0%
!! TGTAAGTTCATACTGTTTTA+AGG - chr8_1:88624238-88624257 Msa1223990:CDS 25.0%
! ACTCTCTATTATCAAGAATT+TGG + chr8_1:88624430-88624449 None:intergenic 25.0%
! AACAGGATAATACAATCATA+TGG + chr8_1:88624558-88624577 None:intergenic 25.0%
! TATGATTGTATTATCCTGTT+TGG - chr8_1:88624558-88624577 Msa1223990:intron 25.0%
! CGTGTTAGTACTTTATAATT+AGG - chr8_1:88624702-88624721 Msa1223990:intron 25.0%
!! ATTCTTAATTTTCAGACACA+TGG - chr8_1:88624767-88624786 Msa1223990:intron 25.0%
! GAATTCTAAATGCAATAAGT+TGG - chr8_1:88624789-88624808 Msa1223990:intron 25.0%
! ATTCTAAATGCAATAAGTTG+GGG - chr8_1:88624791-88624810 Msa1223990:intron 25.0%
!! TTGCTTTTGGCCAAATTAAT+GGG + chr8_1:88623539-88623558 None:intergenic 30.0%
!! CTTTGTTGTTTGAGAATGTT+TGG + chr8_1:88623698-88623717 None:intergenic 30.0%
AATAACTGCAACAAATAGGT+GGG - chr8_1:88623818-88623837 Msa1223990:CDS 30.0%
! GAATTTTTACACAAAACCGT+TGG - chr8_1:88624286-88624305 Msa1223990:CDS 30.0%
!! TCATTATGTTGTTTCGATTG+TGG - chr8_1:88624451-88624470 Msa1223990:intron 30.0%
TGGTCATAATGTAATTGCAT+AGG - chr8_1:88624471-88624490 Msa1223990:intron 30.0%
!! AAAGTTCTAGGATTGTGATA+TGG + chr8_1:88624498-88624517 None:intergenic 30.0%
! ACACCTCAAATTTAAAGTGT+CGG + chr8_1:88624597-88624616 None:intergenic 30.0%
AGTAATAGCAAGGTATATGA+AGG - chr8_1:88624835-88624854 Msa1223990:intron 30.0%
!! ATAGTTGGATTATCTGGTTT+TGG - chr8_1:88624920-88624939 Msa1223990:CDS 30.0%
!!! AAGTGTTTGCTCTATTTTTG+AGG - chr8_1:88625035-88625054 Msa1223990:CDS 30.0%
!! ACCATAAGTTGAGATTTTAC+TGG - chr8_1:88625068-88625087 Msa1223990:CDS 30.0%
TCCAGTAAAATCTCAACTTA+TGG + chr8_1:88625072-88625091 None:intergenic 30.0%
GTTTGTAATGCTAATGCTTA+TGG + chr8_1:88625125-88625144 None:intergenic 30.0%
! AGCATTACAAACGTTTTCAA+AGG - chr8_1:88625133-88625152 Msa1223990:CDS 30.0%
! GCATTACAAACGTTTTCAAA+GGG - chr8_1:88625134-88625153 Msa1223990:CDS 30.0%
CATGCTTACATTGGTATTAT+TGG - chr8_1:88625205-88625224 Msa1223990:CDS 30.0%
! ATTGGTATTATTGGTGCTTT+GGG - chr8_1:88625214-88625233 Msa1223990:CDS 30.0%
TATACTTACCATGGCTTAAA+GGG + chr8_1:88625353-88625372 None:intergenic 30.0%
! TTAGACCCCTTTGTATATTT+TGG - chr8_1:88625431-88625450 Msa1223990:CDS 30.0%
! TAGACCCCTTTGTATATTTT+GGG - chr8_1:88625432-88625451 Msa1223990:CDS 30.0%
AGTACCCAAAATATACAAAG+GGG + chr8_1:88625439-88625458 None:intergenic 30.0%
GAGTACCCAAAATATACAAA+GGG + chr8_1:88625440-88625459 None:intergenic 30.0%
! AGAGTACCCAAAATATACAA+AGG + chr8_1:88625441-88625460 None:intergenic 30.0%
!!! AGTCTTAGTTTTGACTTTTG+AGG - chr8_1:88625476-88625495 Msa1223990:CDS 30.0%
!!! TTTTGAGGTAATTCTTTCAC+AGG - chr8_1:88625491-88625510 Msa1223990:exon 30.0%
!! TTCACAGGATACTTACTTTT+AGG - chr8_1:88625506-88625525 Msa1223990:exon 30.0%
!! TCACAGGATACTTACTTTTA+GGG - chr8_1:88625507-88625526 Msa1223990:five_prime_UTR 30.0%
ATCATTATTGTAACGTTCTC+TGG - chr8_1:88625634-88625653 Msa1223990:five_prime_UTR 30.0%
TCATTATTGTAACGTTCTCT+GGG - chr8_1:88625635-88625654 Msa1223990:five_prime_UTR 30.0%
!! TTGCTTTTGGCCAAATTAAT+GGG + chr8_1:88623539-88623558 None:intergenic 30.0%
!! CTTTGTTGTTTGAGAATGTT+TGG + chr8_1:88623698-88623717 None:intergenic 30.0%
AATAACTGCAACAAATAGGT+GGG - chr8_1:88623818-88623837 Msa1223990:CDS 30.0%
! GAATTTTTACACAAAACCGT+TGG - chr8_1:88624286-88624305 Msa1223990:CDS 30.0%
!! TCATTATGTTGTTTCGATTG+TGG - chr8_1:88624451-88624470 Msa1223990:intron 30.0%
TGGTCATAATGTAATTGCAT+AGG - chr8_1:88624471-88624490 Msa1223990:intron 30.0%
!! AAAGTTCTAGGATTGTGATA+TGG + chr8_1:88624498-88624517 None:intergenic 30.0%
! ACACCTCAAATTTAAAGTGT+CGG + chr8_1:88624597-88624616 None:intergenic 30.0%
AGTAATAGCAAGGTATATGA+AGG - chr8_1:88624835-88624854 Msa1223990:intron 30.0%
!! ATAGTTGGATTATCTGGTTT+TGG - chr8_1:88624920-88624939 Msa1223990:CDS 30.0%
!!! AAGTGTTTGCTCTATTTTTG+AGG - chr8_1:88625035-88625054 Msa1223990:CDS 30.0%
!! ACCATAAGTTGAGATTTTAC+TGG - chr8_1:88625068-88625087 Msa1223990:CDS 30.0%
TCCAGTAAAATCTCAACTTA+TGG + chr8_1:88625072-88625091 None:intergenic 30.0%
GTTTGTAATGCTAATGCTTA+TGG + chr8_1:88625125-88625144 None:intergenic 30.0%
! AGCATTACAAACGTTTTCAA+AGG - chr8_1:88625133-88625152 Msa1223990:CDS 30.0%
! GCATTACAAACGTTTTCAAA+GGG - chr8_1:88625134-88625153 Msa1223990:CDS 30.0%
CATGCTTACATTGGTATTAT+TGG - chr8_1:88625205-88625224 Msa1223990:CDS 30.0%
! ATTGGTATTATTGGTGCTTT+GGG - chr8_1:88625214-88625233 Msa1223990:CDS 30.0%
TATACTTACCATGGCTTAAA+GGG + chr8_1:88625353-88625372 None:intergenic 30.0%
! TTAGACCCCTTTGTATATTT+TGG - chr8_1:88625431-88625450 Msa1223990:CDS 30.0%
! TAGACCCCTTTGTATATTTT+GGG - chr8_1:88625432-88625451 Msa1223990:CDS 30.0%
AGTACCCAAAATATACAAAG+GGG + chr8_1:88625439-88625458 None:intergenic 30.0%
GAGTACCCAAAATATACAAA+GGG + chr8_1:88625440-88625459 None:intergenic 30.0%
! AGAGTACCCAAAATATACAA+AGG + chr8_1:88625441-88625460 None:intergenic 30.0%
!!! AGTCTTAGTTTTGACTTTTG+AGG - chr8_1:88625476-88625495 Msa1223990:CDS 30.0%
!!! TTTTGAGGTAATTCTTTCAC+AGG - chr8_1:88625491-88625510 Msa1223990:exon 30.0%
!! TTCACAGGATACTTACTTTT+AGG - chr8_1:88625506-88625525 Msa1223990:exon 30.0%
!! TCACAGGATACTTACTTTTA+GGG - chr8_1:88625507-88625526 Msa1223990:five_prime_UTR 30.0%
ATCATTATTGTAACGTTCTC+TGG - chr8_1:88625634-88625653 Msa1223990:five_prime_UTR 30.0%
TCATTATTGTAACGTTCTCT+GGG - chr8_1:88625635-88625654 Msa1223990:five_prime_UTR 30.0%
!!! GTTGCTTTTGGCCAAATTAA+TGG + chr8_1:88623540-88623559 None:intergenic 35.0%
!!! ATTCTTCAATGGGTTGCTTT+TGG + chr8_1:88623552-88623571 None:intergenic 35.0%
TACATAAAGCAAAGAGAAGG+AGG - chr8_1:88623573-88623592 Msa1223990:three_prime_UTR 35.0%
!! ATTTTAGCACCATCATGTTG+AGG - chr8_1:88623601-88623620 Msa1223990:three_prime_UTR 35.0%
TATGCTACTCAAAACACACA+AGG + chr8_1:88623637-88623656 None:intergenic 35.0%
CTGGAATAACTGCAACAAAT+AGG - chr8_1:88623814-88623833 Msa1223990:CDS 35.0%
GAATAACTGCAACAAATAGG+TGG - chr8_1:88623817-88623836 Msa1223990:CDS 35.0%
TCCATTAGTTATCCTGTTTC+TGG - chr8_1:88623984-88624003 Msa1223990:CDS 35.0%
ACCAGAAACAGGATAACTAA+TGG + chr8_1:88623988-88624007 None:intergenic 35.0%
AACCTCATTATTCTGATACG+TGG + chr8_1:88624018-88624037 None:intergenic 35.0%
!! AGTTTTGGTGAGAAGATTCA+TGG + chr8_1:88624142-88624161 None:intergenic 35.0%
ATCTTCTCACCAAAACTCTA+AGG - chr8_1:88624145-88624164 Msa1223990:CDS 35.0%
ACACCGACACTTTAAATTTG+AGG - chr8_1:88624591-88624610 Msa1223990:intron 35.0%
ACCAGATAATCCAACTATGT+AGG + chr8_1:88624918-88624937 None:intergenic 35.0%
TGCTATTGTTCTTGTAACCT+TGG - chr8_1:88625003-88625022 Msa1223990:CDS 35.0%
CTCAACTTATGGTCTTTGTT+TGG + chr8_1:88625061-88625080 None:intergenic 35.0%
! TTTCAAAGGGTTTGAAGCAT+TGG - chr8_1:88625147-88625166 Msa1223990:CDS 35.0%
! TTCAAAGGGTTTGAAGCATT+GGG - chr8_1:88625148-88625167 Msa1223990:CDS 35.0%
!!! AAGCATTGGGAGATTTTGTA+GGG - chr8_1:88625161-88625180 Msa1223990:CDS 35.0%
! CATTGGTATTATTGGTGCTT+TGG - chr8_1:88625213-88625232 Msa1223990:CDS 35.0%
! TTGGTATTATTGGTGCTTTG+GGG - chr8_1:88625215-88625234 Msa1223990:CDS 35.0%
! AAGACTTCAGATGGTGTTAA+TGG - chr8_1:88625304-88625323 Msa1223990:CDS 35.0%
GTTAATGGAGCAAATAGCTA+TGG - chr8_1:88625319-88625338 Msa1223990:CDS 35.0%
CTATACTTACCATGGCTTAA+AGG + chr8_1:88625354-88625373 None:intergenic 35.0%
CTTTAAGCCATGGTAAGTAT+AGG - chr8_1:88625352-88625371 Msa1223990:CDS 35.0%
CATCATTCCTATACTTACCA+TGG + chr8_1:88625362-88625381 None:intergenic 35.0%
!! CACAGGATACTTACTTTTAG+GGG - chr8_1:88625508-88625527 Msa1223990:five_prime_UTR 35.0%
TAATACAATATGAGAGGGAC+AGG + chr8_1:88623440-88623459 None:intergenic 35.0%
!!! GTTGCTTTTGGCCAAATTAA+TGG + chr8_1:88623540-88623559 None:intergenic 35.0%
!!! ATTCTTCAATGGGTTGCTTT+TGG + chr8_1:88623552-88623571 None:intergenic 35.0%
TACATAAAGCAAAGAGAAGG+AGG - chr8_1:88623573-88623592 Msa1223990:three_prime_UTR 35.0%
!! ATTTTAGCACCATCATGTTG+AGG - chr8_1:88623601-88623620 Msa1223990:three_prime_UTR 35.0%
TATGCTACTCAAAACACACA+AGG + chr8_1:88623637-88623656 None:intergenic 35.0%
CTGGAATAACTGCAACAAAT+AGG - chr8_1:88623814-88623833 Msa1223990:CDS 35.0%
GAATAACTGCAACAAATAGG+TGG - chr8_1:88623817-88623836 Msa1223990:CDS 35.0%
TCCATTAGTTATCCTGTTTC+TGG - chr8_1:88623984-88624003 Msa1223990:CDS 35.0%
ACCAGAAACAGGATAACTAA+TGG + chr8_1:88623988-88624007 None:intergenic 35.0%
AACCTCATTATTCTGATACG+TGG + chr8_1:88624018-88624037 None:intergenic 35.0%
!! AGTTTTGGTGAGAAGATTCA+TGG + chr8_1:88624142-88624161 None:intergenic 35.0%
ATCTTCTCACCAAAACTCTA+AGG - chr8_1:88624145-88624164 Msa1223990:CDS 35.0%
ACACCGACACTTTAAATTTG+AGG - chr8_1:88624591-88624610 Msa1223990:intron 35.0%
ACCAGATAATCCAACTATGT+AGG + chr8_1:88624918-88624937 None:intergenic 35.0%
TGCTATTGTTCTTGTAACCT+TGG - chr8_1:88625003-88625022 Msa1223990:CDS 35.0%
CTCAACTTATGGTCTTTGTT+TGG + chr8_1:88625061-88625080 None:intergenic 35.0%
! TTTCAAAGGGTTTGAAGCAT+TGG - chr8_1:88625147-88625166 Msa1223990:CDS 35.0%
! TTCAAAGGGTTTGAAGCATT+GGG - chr8_1:88625148-88625167 Msa1223990:CDS 35.0%
!!! AAGCATTGGGAGATTTTGTA+GGG - chr8_1:88625161-88625180 Msa1223990:CDS 35.0%
! CATTGGTATTATTGGTGCTT+TGG - chr8_1:88625213-88625232 Msa1223990:CDS 35.0%
! TTGGTATTATTGGTGCTTTG+GGG - chr8_1:88625215-88625234 Msa1223990:CDS 35.0%
! AAGACTTCAGATGGTGTTAA+TGG - chr8_1:88625304-88625323 Msa1223990:CDS 35.0%
GTTAATGGAGCAAATAGCTA+TGG - chr8_1:88625319-88625338 Msa1223990:CDS 35.0%
CTATACTTACCATGGCTTAA+AGG + chr8_1:88625354-88625373 None:intergenic 35.0%
CTTTAAGCCATGGTAAGTAT+AGG - chr8_1:88625352-88625371 Msa1223990:CDS 35.0%
CATCATTCCTATACTTACCA+TGG + chr8_1:88625362-88625381 None:intergenic 35.0%
!! CACAGGATACTTACTTTTAG+GGG - chr8_1:88625508-88625527 Msa1223990:five_prime_UTR 35.0%
ACATGATTGAGTTTGAGCTG+AGG + chr8_1:88623670-88623689 None:intergenic 40.0%
TTGTTTCATCGTATGACCAG+TGG + chr8_1:88623764-88623783 None:intergenic 40.0%
TGGTCATACGATGAAACAAG+TGG - chr8_1:88623765-88623784 Msa1223990:CDS 40.0%
GACATAGCATACATACACAC+TGG - chr8_1:88623795-88623814 Msa1223990:CDS 40.0%
!! AACAAATAGGTGGGTTGCTT+GGG - chr8_1:88623827-88623846 Msa1223990:CDS 40.0%
ACATTGTAGACACAAGCACA+CGG - chr8_1:88623949-88623968 Msa1223990:CDS 40.0%
TGCCACGTATCAGAATAATG+AGG - chr8_1:88624013-88624032 Msa1223990:CDS 40.0%
AGAGGTTGTTCCATTTGGAA+GGG + chr8_1:88624060-88624079 None:intergenic 40.0%
AAGAGGTTGTTCCATTTGGA+AGG + chr8_1:88624061-88624080 None:intergenic 40.0%
TCCAAATGGAACAACCTCTT+TGG - chr8_1:88624061-88624080 Msa1223990:CDS 40.0%
ACCAAAGAGGTTGTTCCATT+TGG + chr8_1:88624065-88624084 None:intergenic 40.0%
! CAACCTCTTTGGTTCATGTA+TGG - chr8_1:88624072-88624091 Msa1223990:CDS 40.0%
TTGCCATACATGAACCAAAG+AGG + chr8_1:88624078-88624097 None:intergenic 40.0%
TTGGTTCATGTATGGCAAGA+TGG - chr8_1:88624080-88624099 Msa1223990:CDS 40.0%
TGGTTCATGTATGGCAAGAT+GGG - chr8_1:88624081-88624100 Msa1223990:CDS 40.0%
GATTCATGGCTATGTTCTTG+AGG + chr8_1:88624128-88624147 None:intergenic 40.0%
! CCAAGACTTCCTTAGAGTTT+TGG + chr8_1:88624157-88624176 None:intergenic 40.0%
! CCAAAACTCTAAGGAAGTCT+TGG - chr8_1:88624154-88624173 Msa1223990:CDS 40.0%
! GAAGTCTTGGATCTTGTTTC+TGG - chr8_1:88624167-88624186 Msa1223990:CDS 40.0%
!! CACATATGTAAGTACCGAGT+TGG + chr8_1:88624659-88624678 None:intergenic 40.0%
CAACTCGGTACTTACATATG+TGG - chr8_1:88624657-88624676 Msa1223990:intron 40.0%
! AGGGACGATTCTTGTTTGAT+TGG - chr8_1:88624722-88624741 Msa1223990:intron 40.0%
TGTGAAGATAGAACCAAGCA+GGG + chr8_1:88624877-88624896 None:intergenic 40.0%
ATGTGAAGATAGAACCAAGC+AGG + chr8_1:88624878-88624897 None:intergenic 40.0%
GCCTACATAGTTGGATTATC+TGG - chr8_1:88624914-88624933 Msa1223990:CDS 40.0%
!!! GGATTATCTGGTTTTGGTAC+TGG - chr8_1:88624926-88624945 Msa1223990:CDS 40.0%
!! TTTGGTACTGGTCTCAAACT+CGG - chr8_1:88624938-88624957 Msa1223990:CDS 40.0%
AAACTCGGTAGTGATTCAGA+GGG - chr8_1:88624953-88624972 Msa1223990:CDS 40.0%
AAACACTTGAAGAGTTGCCA+AGG + chr8_1:88625023-88625042 None:intergenic 40.0%
AATATCTACCACCACGTTGT+AGG - chr8_1:88625091-88625110 Msa1223990:CDS 40.0%
ATATCTACCACCACGTTGTA+GGG - chr8_1:88625092-88625111 Msa1223990:CDS 40.0%
!!! GAAGCATTGGGAGATTTTGT+AGG - chr8_1:88625160-88625179 Msa1223990:CDS 40.0%
!! AGCATTGGGAGATTTTGTAG+GGG - chr8_1:88625162-88625181 Msa1223990:CDS 40.0%
! AACTGGAAGCATGCTTACAT+TGG - chr8_1:88625196-88625215 Msa1223990:CDS 40.0%
! TGGTATTATTGGTGCTTTGG+GGG - chr8_1:88625216-88625235 Msa1223990:CDS 40.0%
TTCTTCTACCCTTTAAGCCA+TGG - chr8_1:88625342-88625361 Msa1223990:CDS 40.0%
ACATGATTGAGTTTGAGCTG+AGG + chr8_1:88623670-88623689 None:intergenic 40.0%
TTGTTTCATCGTATGACCAG+TGG + chr8_1:88623764-88623783 None:intergenic 40.0%
TGGTCATACGATGAAACAAG+TGG - chr8_1:88623765-88623784 Msa1223990:CDS 40.0%
GACATAGCATACATACACAC+TGG - chr8_1:88623795-88623814 Msa1223990:CDS 40.0%
!! AACAAATAGGTGGGTTGCTT+GGG - chr8_1:88623827-88623846 Msa1223990:CDS 40.0%
ACATTGTAGACACAAGCACA+CGG - chr8_1:88623949-88623968 Msa1223990:CDS 40.0%
TGCCACGTATCAGAATAATG+AGG - chr8_1:88624013-88624032 Msa1223990:CDS 40.0%
AGAGGTTGTTCCATTTGGAA+GGG + chr8_1:88624060-88624079 None:intergenic 40.0%
AAGAGGTTGTTCCATTTGGA+AGG + chr8_1:88624061-88624080 None:intergenic 40.0%
TCCAAATGGAACAACCTCTT+TGG - chr8_1:88624061-88624080 Msa1223990:CDS 40.0%
ACCAAAGAGGTTGTTCCATT+TGG + chr8_1:88624065-88624084 None:intergenic 40.0%
! CAACCTCTTTGGTTCATGTA+TGG - chr8_1:88624072-88624091 Msa1223990:CDS 40.0%
TTGCCATACATGAACCAAAG+AGG + chr8_1:88624078-88624097 None:intergenic 40.0%
TTGGTTCATGTATGGCAAGA+TGG - chr8_1:88624080-88624099 Msa1223990:CDS 40.0%
TGGTTCATGTATGGCAAGAT+GGG - chr8_1:88624081-88624100 Msa1223990:CDS 40.0%
GATTCATGGCTATGTTCTTG+AGG + chr8_1:88624128-88624147 None:intergenic 40.0%
! CCAAGACTTCCTTAGAGTTT+TGG + chr8_1:88624157-88624176 None:intergenic 40.0%
! CCAAAACTCTAAGGAAGTCT+TGG - chr8_1:88624154-88624173 Msa1223990:CDS 40.0%
! GAAGTCTTGGATCTTGTTTC+TGG - chr8_1:88624167-88624186 Msa1223990:CDS 40.0%
!! CACATATGTAAGTACCGAGT+TGG + chr8_1:88624659-88624678 None:intergenic 40.0%
CAACTCGGTACTTACATATG+TGG - chr8_1:88624657-88624676 Msa1223990:intron 40.0%
! AGGGACGATTCTTGTTTGAT+TGG - chr8_1:88624722-88624741 Msa1223990:intron 40.0%
TGTGAAGATAGAACCAAGCA+GGG + chr8_1:88624877-88624896 None:intergenic 40.0%
ATGTGAAGATAGAACCAAGC+AGG + chr8_1:88624878-88624897 None:intergenic 40.0%
GCCTACATAGTTGGATTATC+TGG - chr8_1:88624914-88624933 Msa1223990:CDS 40.0%
!!! GGATTATCTGGTTTTGGTAC+TGG - chr8_1:88624926-88624945 Msa1223990:CDS 40.0%
!! TTTGGTACTGGTCTCAAACT+CGG - chr8_1:88624938-88624957 Msa1223990:CDS 40.0%
AAACTCGGTAGTGATTCAGA+GGG - chr8_1:88624953-88624972 Msa1223990:CDS 40.0%
AAACACTTGAAGAGTTGCCA+AGG + chr8_1:88625023-88625042 None:intergenic 40.0%
AATATCTACCACCACGTTGT+AGG - chr8_1:88625091-88625110 Msa1223990:CDS 40.0%
ATATCTACCACCACGTTGTA+GGG - chr8_1:88625092-88625111 Msa1223990:CDS 40.0%
!!! GAAGCATTGGGAGATTTTGT+AGG - chr8_1:88625160-88625179 Msa1223990:CDS 40.0%
!! AGCATTGGGAGATTTTGTAG+GGG - chr8_1:88625162-88625181 Msa1223990:CDS 40.0%
! AACTGGAAGCATGCTTACAT+TGG - chr8_1:88625196-88625215 Msa1223990:CDS 40.0%
! TGGTATTATTGGTGCTTTGG+GGG - chr8_1:88625216-88625235 Msa1223990:CDS 40.0%
TTCTTCTACCCTTTAAGCCA+TGG - chr8_1:88625342-88625361 Msa1223990:CDS 40.0%
CAACGTAAGCCTCAACATGA+TGG + chr8_1:88623613-88623632 None:intergenic 45.0%
CATCATGTTGAGGCTTACGT+TGG - chr8_1:88623611-88623630 Msa1223990:three_prime_UTR 45.0%
TTTCATCGTATGACCAGTGG+AGG + chr8_1:88623761-88623780 None:intergenic 45.0%
!! CAACAAATAGGTGGGTTGCT+TGG - chr8_1:88623826-88623845 Msa1223990:CDS 45.0%
! ATATGCTTTTGGGCTTCCAC+TGG + chr8_1:88623922-88623941 None:intergenic 45.0%
! GCTACTTTGACCCTTCCAAA+TGG - chr8_1:88624047-88624066 Msa1223990:CDS 45.0%
GGTTCATGTATGGCAAGATG+GGG - chr8_1:88624082-88624101 Msa1223990:CDS 45.0%
GTGTCGCATAGATACCAAAC+AGG + chr8_1:88624575-88624594 None:intergenic 45.0%
!! TGTAAGTACCGAGTTGGTGT+TGG + chr8_1:88624653-88624672 None:intergenic 45.0%
!! CTTGCTATTACTGCTCCTGT+TGG + chr8_1:88624827-88624846 None:intergenic 45.0%
CAACAGGAGCAGTAATAGCA+AGG - chr8_1:88624825-88624844 Msa1223990:intron 45.0%
CAAGTCTCTGCCTACATAGT+TGG - chr8_1:88624905-88624924 Msa1223990:CDS 45.0%
CAAACTCGGTAGTGATTCAG+AGG - chr8_1:88624952-88624971 Msa1223990:CDS 45.0%
TAACATACCCTACAACGTGG+TGG + chr8_1:88625102-88625121 None:intergenic 45.0%
TGGTAACATACCCTACAACG+TGG + chr8_1:88625105-88625124 None:intergenic 45.0%
TAGGGGATCGTTACAAGAAC+TGG - chr8_1:88625179-88625198 Msa1223990:CDS 45.0%
! GGTATTATTGGTGCTTTGGG+GGG - chr8_1:88625217-88625236 Msa1223990:CDS 45.0%
!! TCCTTTTGGAAGCTTACACG+TGG - chr8_1:88625248-88625267 Msa1223990:CDS 45.0%
TCCACGTGTAAGCTTCCAAA+AGG + chr8_1:88625252-88625271 None:intergenic 45.0%
TTTGGAAGCTTACACGTGGA+TGG - chr8_1:88625252-88625271 Msa1223990:CDS 45.0%
GCAGAGAACAAGACTTCAGA+TGG - chr8_1:88625295-88625314 Msa1223990:CDS 45.0%
! CAACACCTTTCTTCGGTTTG+TGG - chr8_1:88625660-88625679 Msa1223990:five_prime_UTR 45.0%
CAACGTAAGCCTCAACATGA+TGG + chr8_1:88623613-88623632 None:intergenic 45.0%
CATCATGTTGAGGCTTACGT+TGG - chr8_1:88623611-88623630 Msa1223990:three_prime_UTR 45.0%
TTTCATCGTATGACCAGTGG+AGG + chr8_1:88623761-88623780 None:intergenic 45.0%
!! CAACAAATAGGTGGGTTGCT+TGG - chr8_1:88623826-88623845 Msa1223990:CDS 45.0%
! ATATGCTTTTGGGCTTCCAC+TGG + chr8_1:88623922-88623941 None:intergenic 45.0%
! GCTACTTTGACCCTTCCAAA+TGG - chr8_1:88624047-88624066 Msa1223990:CDS 45.0%
GGTTCATGTATGGCAAGATG+GGG - chr8_1:88624082-88624101 Msa1223990:CDS 45.0%
GTGTCGCATAGATACCAAAC+AGG + chr8_1:88624575-88624594 None:intergenic 45.0%
!! TGTAAGTACCGAGTTGGTGT+TGG + chr8_1:88624653-88624672 None:intergenic 45.0%
!! CTTGCTATTACTGCTCCTGT+TGG + chr8_1:88624827-88624846 None:intergenic 45.0%
CAACAGGAGCAGTAATAGCA+AGG - chr8_1:88624825-88624844 Msa1223990:intron 45.0%
CAAGTCTCTGCCTACATAGT+TGG - chr8_1:88624905-88624924 Msa1223990:CDS 45.0%
CAAACTCGGTAGTGATTCAG+AGG - chr8_1:88624952-88624971 Msa1223990:CDS 45.0%
TAACATACCCTACAACGTGG+TGG + chr8_1:88625102-88625121 None:intergenic 45.0%
TGGTAACATACCCTACAACG+TGG + chr8_1:88625105-88625124 None:intergenic 45.0%
TAGGGGATCGTTACAAGAAC+TGG - chr8_1:88625179-88625198 Msa1223990:CDS 45.0%
! GGTATTATTGGTGCTTTGGG+GGG - chr8_1:88625217-88625236 Msa1223990:CDS 45.0%
!! TCCTTTTGGAAGCTTACACG+TGG - chr8_1:88625248-88625267 Msa1223990:CDS 45.0%
TCCACGTGTAAGCTTCCAAA+AGG + chr8_1:88625252-88625271 None:intergenic 45.0%
TTTGGAAGCTTACACGTGGA+TGG - chr8_1:88625252-88625271 Msa1223990:CDS 45.0%
GCAGAGAACAAGACTTCAGA+TGG - chr8_1:88625295-88625314 Msa1223990:CDS 45.0%
! CAACACCTTTCTTCGGTTTG+TGG - chr8_1:88625660-88625679 Msa1223990:five_prime_UTR 45.0%
! TGGAGGTACGAGGTTAACTG+TGG + chr8_1:88623744-88623763 None:intergenic 50.0%
AGTTAACCTCGTACCTCCAC+TGG - chr8_1:88623745-88623764 Msa1223990:exon 50.0%
!! AAGGGTGCTGCTTGGATTGA+TGG + chr8_1:88623853-88623872 None:intergenic 50.0%
CAAAGCTTGTGCTCCGATCA+TGG + chr8_1:88623883-88623902 None:intergenic 50.0%
CATGATCGGAGCACAAGCTT+TGG - chr8_1:88623881-88623900 Msa1223990:CDS 50.0%
ACAAGCACACGGTTGCAAGA+AGG - chr8_1:88623960-88623979 Msa1223990:CDS 50.0%
GTGGCAGACAAACCAGAAAC+AGG + chr8_1:88623999-88624018 None:intergenic 50.0%
CGGACTACACTAACACGTGT+TGG + chr8_1:88624629-88624648 None:intergenic 50.0%
TAGTCCGACCAACACCAACT+CGG - chr8_1:88624642-88624661 Msa1223990:intron 50.0%
!! AGTACCGAGTTGGTGTTGGT+CGG + chr8_1:88624649-88624668 None:intergenic 50.0%
TGGGGAATCTTGATGCCAAC+AGG - chr8_1:88624809-88624828 Msa1223990:intron 50.0%
ATAGAACCAAGCAGGGTCTG+CGG + chr8_1:88624870-88624889 None:intergenic 50.0%
CTGGGAGCAACACCTTTCTT+CGG - chr8_1:88625653-88625672 Msa1223990:five_prime_UTR 50.0%
! TGGAGGTACGAGGTTAACTG+TGG + chr8_1:88623744-88623763 None:intergenic 50.0%
AGTTAACCTCGTACCTCCAC+TGG - chr8_1:88623745-88623764 Msa1223990:exon 50.0%
!! AAGGGTGCTGCTTGGATTGA+TGG + chr8_1:88623853-88623872 None:intergenic 50.0%
CAAAGCTTGTGCTCCGATCA+TGG + chr8_1:88623883-88623902 None:intergenic 50.0%
CATGATCGGAGCACAAGCTT+TGG - chr8_1:88623881-88623900 Msa1223990:CDS 50.0%
ACAAGCACACGGTTGCAAGA+AGG - chr8_1:88623960-88623979 Msa1223990:CDS 50.0%
GTGGCAGACAAACCAGAAAC+AGG + chr8_1:88623999-88624018 None:intergenic 50.0%
CGGACTACACTAACACGTGT+TGG + chr8_1:88624629-88624648 None:intergenic 50.0%
TAGTCCGACCAACACCAACT+CGG - chr8_1:88624642-88624661 Msa1223990:intron 50.0%
!! AGTACCGAGTTGGTGTTGGT+CGG + chr8_1:88624649-88624668 None:intergenic 50.0%
TGGGGAATCTTGATGCCAAC+AGG - chr8_1:88624809-88624828 Msa1223990:intron 50.0%
ATAGAACCAAGCAGGGTCTG+CGG + chr8_1:88624870-88624889 None:intergenic 50.0%
CTGGGAGCAACACCTTTCTT+CGG - chr8_1:88625653-88625672 Msa1223990:five_prime_UTR 50.0%
! GTATGACCAGTGGAGGTACG+AGG + chr8_1:88623754-88623773 None:intergenic 55.0%
ACCCTTGACCCAGCCATGAT+CGG - chr8_1:88623867-88623886 Msa1223990:CDS 55.0%
TCCGATCATGGCTGGGTCAA+GGG + chr8_1:88623871-88623890 None:intergenic 55.0%
CTTGTGCTCCGATCATGGCT+GGG + chr8_1:88623878-88623897 None:intergenic 55.0%
! GATCGGAGCACAAGCTTTGG+TGG - chr8_1:88623884-88623903 Msa1223990:CDS 55.0%
GTGGCTATTCCACAAGCCAG+TGG - chr8_1:88623903-88623922 Msa1223990:CDS 55.0%
!! TTTGGGCTTCCACTGGCTTG+TGG + chr8_1:88623915-88623934 None:intergenic 55.0%
GTACCTCCCAAGCTGCAAGT+GGG - chr8_1:88624189-88624208 Msa1223990:CDS 55.0%
AATCCCACTTGCAGCTTGGG+AGG + chr8_1:88624195-88624214 None:intergenic 55.0%
TCCCAAGCTGCAAGTGGGAT+TGG - chr8_1:88624194-88624213 Msa1223990:CDS 55.0%
GCCAATCCCACTTGCAGCTT+GGG + chr8_1:88624198-88624217 None:intergenic 55.0%
AGCCAATCCCACTTGCAGCT+TGG + chr8_1:88624199-88624218 None:intergenic 55.0%
TCAAATCCGCAGACCCTGCT+TGG - chr8_1:88624861-88624880 Msa1223990:intron 55.0%
! GTATGACCAGTGGAGGTACG+AGG + chr8_1:88623754-88623773 None:intergenic 55.0%
ACCCTTGACCCAGCCATGAT+CGG - chr8_1:88623867-88623886 Msa1223990:CDS 55.0%
TCCGATCATGGCTGGGTCAA+GGG + chr8_1:88623871-88623890 None:intergenic 55.0%
CTTGTGCTCCGATCATGGCT+GGG + chr8_1:88623878-88623897 None:intergenic 55.0%
! GATCGGAGCACAAGCTTTGG+TGG - chr8_1:88623884-88623903 Msa1223990:CDS 55.0%
GTGGCTATTCCACAAGCCAG+TGG - chr8_1:88623903-88623922 Msa1223990:CDS 55.0%
!! TTTGGGCTTCCACTGGCTTG+TGG + chr8_1:88623915-88623934 None:intergenic 55.0%
GTACCTCCCAAGCTGCAAGT+GGG - chr8_1:88624189-88624208 Msa1223990:CDS 55.0%
AATCCCACTTGCAGCTTGGG+AGG + chr8_1:88624195-88624214 None:intergenic 55.0%
TCCCAAGCTGCAAGTGGGAT+TGG - chr8_1:88624194-88624213 Msa1223990:CDS 55.0%
GCCAATCCCACTTGCAGCTT+GGG + chr8_1:88624198-88624217 None:intergenic 55.0%
AGCCAATCCCACTTGCAGCT+TGG + chr8_1:88624199-88624218 None:intergenic 55.0%
TCAAATCCGCAGACCCTGCT+TGG - chr8_1:88624861-88624880 Msa1223990:intron 55.0%
CTCCGATCATGGCTGGGTCA+AGG + chr8_1:88623872-88623891 None:intergenic 60.0%
GCTTGTGCTCCGATCATGGC+TGG + chr8_1:88623879-88623898 None:intergenic 60.0%
GGTACCTCCCAAGCTGCAAG+TGG - chr8_1:88624188-88624207 Msa1223990:CDS 60.0%
!!! GGGGGGCATTGCTGTCCTTT+TGG - chr8_1:88625234-88625253 Msa1223990:CDS 60.0%
CTCCGATCATGGCTGGGTCA+AGG + chr8_1:88623872-88623891 None:intergenic 60.0%
GCTTGTGCTCCGATCATGGC+TGG + chr8_1:88623879-88623898 None:intergenic 60.0%
GGTACCTCCCAAGCTGCAAG+TGG - chr8_1:88624188-88624207 Msa1223990:CDS 60.0%
!!! GGGGGGCATTGCTGTCCTTT+TGG - chr8_1:88625234-88625253 Msa1223990:CDS 60.0%
!! GCTGGGTCAAGGGTGCTGCT+TGG + chr8_1:88623861-88623880 None:intergenic 65.0%
!! GCTGGGTCAAGGGTGCTGCT+TGG + chr8_1:88623861-88623880 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 88623438 88625683 88623438 ID=Msa1223990;Name=Msa1223990
chr8_1 mRNA 88623438 88625683 88623438 ID=Msa1223990-mRNA-1;Parent=Msa1223990;Name=Msa1223990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=177|1|1|1|1|1|2|326|399
chr8_1 exon 88623438 88624339 88623438 ID=Msa1223990-mRNA-1:exon:32218;Parent=Msa1223990-mRNA-1
chr8_1 exon 88624883 88625683 88624883 ID=Msa1223990-mRNA-1:exon:32217;Parent=Msa1223990-mRNA-1
chr8_1 five_prime_UTR 88625507 88625683 88625507 ID=Msa1223990-mRNA-1:five_prime_utr;Parent=Msa1223990-mRNA-1
chr8_1 CDS 88624883 88625506 88624883 ID=Msa1223990-mRNA-1:cds;Parent=Msa1223990-mRNA-1
chr8_1 CDS 88623764 88624339 88623764 ID=Msa1223990-mRNA-1:cds;Parent=Msa1223990-mRNA-1
chr8_1 three_prime_UTR 88623438 88623763 88623438 ID=Msa1223990-mRNA-1:three_prime_utr;Parent=Msa1223990-mRNA-1
Gene Sequence

>Msa1223990

ATGTTGAGGCTTACGTTGGCCTTGTGTGTTTTGAGTAGCATAATTTTGACATCCTCAGCTCAAACTCAATCATGTAAAAACCAAACATTCTCAAACAACAAAGCATTCACAACATGTCGTGATCTTCCACAGTTAACCTCGTACCTCCACTGGTCATACGATGAAACAAGTGGCAAATTAGACATAGCATACATACACACTGGAATAACTGCAACAAATAGGTGGGTTGCTTGGGCCATCAATCCAAGCAGCACCCTTGACCCAGCCATGATCGGAGCACAAGCTTTGGTGGCTATTCCACAAGCCAGTGGAAGCCCAAAAGCATATACTTCAAACATTGTAGACACAAGCACACGGTTGCAAGAAGGATCCATTAGTTATCCTGTTTCTGGTTTGTCTGCCACGTATCAGAATAATGAGGTTACTATTTTTGCTACTTTGACCCTTCCAAATGGAACAACCTCTTTGGTTCATGTATGGCAAGATGGGGTTCTCTCTTCTGATTCTACTCCTCAAGAACATAGCCATGAATCTTCTCACCAAAACTCTAAGGAAGTCTTGGATCTTGTTTCTGGTACCTCCCAAGCTGCAAGTGGGATTGGCTCGCGTCAAAGAAGAAGAAATACACATGGAATTCTAAATGCAATAAGTTGGGGAATCTTGATGCCAACAGGAGCAGTAATAGCAAGGTATATGAAGGTGTTCAAATCCGCAGACCCTGCTTGGTTCTATCTTCACATAACTTGTCAAGTCTCTGCCTACATAGTTGGATTATCTGGTTTTGGTACTGGTCTCAAACTCGGTAGTGATTCAGAGGGTATTACATACGACACTCATAGAGCACTTGCTATTGTTCTTGTAACCTTGGCAACTCTTCAAGTGTTTGCTCTATTTTTGAGGCCAAACAAAGACCATAAGTTGAGATTTTACTGGAATATCTACCACCACGTTGTAGGGTATGTTACCATAAGCATTAGCATTACAAACGTTTTCAAAGGGTTTGAAGCATTGGGAGATTTTGTAGGGGATCGTTACAAGAACTGGAAGCATGCTTACATTGGTATTATTGGTGCTTTGGGGGGCATTGCTGTCCTTTTGGAAGCTTACACGTGGATGGTGTGCATGAAGAGAAAGAAAGCAGAGAACAAGACTTCAGATGGTGTTAATGGAGCAAATAGCTATGGTTCTTCTACCCTTTAA

Protein sequence

>Msa1223990

MLRLTLALCVLSSIILTSSAQTQSCKNQTFSNNKAFTTCRDLPQLTSYLHWSYDETSGKLDIAYIHTGITATNRWVAWAINPSSTLDPAMIGAQALVAIPQASGSPKAYTSNIVDTSTRLQEGSISYPVSGLSATYQNNEVTIFATLTLPNGTTSLVHVWQDGVLSSDSTPQEHSHESSHQNSKEVLDLVSGTSQAASGIGSRQRRRNTHGILNAISWGILMPTGAVIARYMKVFKSADPAWFYLHITCQVSAYIVGLSGFGTGLKLGSDSEGITYDTHRALAIVLVTLATLQVFALFLRPNKDHKLRFYWNIYHHVVGYVTISISITNVFKGFEALGDFVGDRYKNWKHAYIGIIGALGGIAVLLEAYTWMVCMKRKKAENKTSDGVNGANSYGSSTL*