AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0818220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0818220 MtrunA17_Chr5g0437181 97.765 358 8 0 1 358 1 358 0.0 728
Msa0818220 MtrunA17_Chr3g0113641 76.966 356 82 0 3 358 4 359 0.0 577
Msa0818220 MtrunA17_Chr4g0006371 65.860 372 113 3 1 358 1 372 0.0 520
Msa0818220 MtrunA17_Chr7g0242551 66.298 362 115 3 1 356 2 362 0.0 509
Msa0818220 MtrunA17_Chr8g0375601 37.644 348 212 3 10 355 7 351 5.20e-84 259
Msa0818220 MtrunA17_Chr5g0423191 36.550 342 210 3 14 355 13 347 1.10e-81 253
Msa0818220 MtrunA17_Chr8g0375671 37.714 350 206 6 11 355 14 356 1.65e-81 253
Msa0818220 MtrunA17_Chr5g0420951 36.550 342 212 2 14 355 18 354 4.07e-81 251
Msa0818220 MtrunA17_Chr8g0345831 41.420 338 188 6 20 355 13 342 3.12e-80 248
Msa0818220 MtrunA17_Chr5g0423251 36.257 342 211 3 14 355 13 347 3.28e-80 249
Msa0818220 MtrunA17_Chr8g0365241 36.842 323 198 3 14 336 23 339 1.44e-79 248
Msa0818220 MtrunA17_Chr3g0109041 39.205 352 196 9 12 354 8 350 1.44e-78 244
Msa0818220 MtrunA17_Chr3g0128001 41.853 313 171 5 25 336 15 317 3.63e-78 243
Msa0818220 MtrunA17_Chr7g0239111 37.615 327 198 2 10 336 16 336 3.78e-78 244
Msa0818220 MtrunA17_Chr2g0314401 39.130 345 199 4 14 355 17 353 4.76e-78 243
Msa0818220 MtrunA17_Chr5g0421041 35.673 342 211 4 14 355 13 345 7.79e-78 243
Msa0818220 MtrunA17_Chr2g0314391 37.971 345 203 4 14 355 36 372 9.15e-78 243
Msa0818220 MtrunA17_Chr5g0421091 38.226 327 188 5 14 336 11 327 3.23e-77 241
Msa0818220 MtrunA17_Chr2g0296371 36.728 324 200 4 14 336 17 336 7.35e-77 241
Msa0818220 MtrunA17_Chr5g0420981 35.604 323 203 2 14 336 18 335 1.01e-76 240
Msa0818220 MtrunA17_Chr5g0420941 38.390 323 192 3 14 336 11 326 1.67e-76 239
Msa0818220 MtrunA17_Chr2g0314381 37.901 343 207 4 14 355 42 379 1.94e-76 240
Msa0818220 MtrunA17_Chr7g0239101 35.260 346 218 2 10 355 16 355 5.85e-76 238
Msa0818220 MtrunA17_Chr8g0375571 38.871 319 184 5 14 328 11 322 4.11e-75 236
Msa0818220 MtrunA17_Chr1g0162191 37.778 315 192 2 22 336 20 330 9.14e-75 235
Msa0818220 MtrunA17_Chr5g0423221 36.337 344 209 4 14 355 37 372 1.82e-74 235
Msa0818220 MtrunA17_Chr7g0239121 35.756 344 214 3 10 352 12 349 2.06e-74 234
Msa0818220 MtrunA17_Chr5g0421011 35.088 342 215 3 14 355 13 347 2.70e-74 234
Msa0818220 MtrunA17_Chr7g0239821 35.244 349 217 3 10 355 22 364 1.19e-73 233
Msa0818220 MtrunA17_Chr5g0398291 37.462 331 198 5 14 336 8 337 7.30e-73 230
Msa0818220 MtrunA17_Chr3g0114861 38.037 326 191 4 14 337 6 322 1.15e-72 229
Msa0818220 MtrunA17_Chr5g0421101 35.965 342 212 3 14 355 13 347 1.48e-72 229
Msa0818220 MtrunA17_Chr8g0375701 37.538 333 199 5 24 355 30 354 9.29e-72 227
Msa0818220 MtrunA17_Chr5g0423201 36.103 349 210 6 11 355 9 348 5.03e-71 225
Msa0818220 MtrunA17_Chr5g0423211 36.503 326 196 5 14 336 13 330 1.29e-70 224
Msa0818220 MtrunA17_Chr5g0420901 35.277 343 213 5 14 355 12 346 1.03e-69 222
Msa0818220 MtrunA17_Chr5g0439011 37.700 313 180 6 48 355 4 306 1.92e-68 218
Msa0818220 MtrunA17_Chr3g0121141 36.656 311 184 6 47 355 2 301 3.16e-68 217
Msa0818220 MtrunA17_Chr2g0289341 36.129 310 185 6 48 354 3 302 6.03e-66 211
Msa0818220 MtrunA17_Chr6g0455481 39.144 327 181 6 24 345 18 331 6.62e-66 211
Msa0818220 MtrunA17_Chr3g0125201 38.435 294 165 4 49 336 3 286 8.03e-66 210
Msa0818220 MtrunA17_Chr8g0371931 36.556 331 200 8 11 337 1 325 2.39e-64 208
Msa0818220 MtrunA17_Chr5g0424201 34.441 331 205 5 11 336 3 326 3.37e-64 207
Msa0818220 MtrunA17_Chr3g0087031 35.821 335 198 8 14 341 24 348 2.47e-63 206
Msa0818220 MtrunA17_Chr8g0375681 37.868 272 167 2 84 355 15 284 2.51e-63 203
Msa0818220 MtrunA17_Chr8g0371921 36.858 331 199 8 11 337 1 325 2.86e-63 206
Msa0818220 MtrunA17_Chr7g0239071 37.818 275 167 2 82 355 29 300 4.02e-63 204
Msa0818220 MtrunA17_Chr5g0405411 36.697 327 196 8 14 337 7 325 7.73e-63 204
Msa0818220 MtrunA17_Chr4g0045411 37.647 340 191 10 29 355 12 343 2.33e-62 203
Msa0818220 MtrunA17_Chr5g0426891 34.545 330 204 7 11 336 1 322 4.18e-62 202
Msa0818220 MtrunA17_Chr8g0370711 34.824 313 197 5 44 355 47 353 9.91e-62 201
Msa0818220 MtrunA17_Chr3g0145171 36.879 282 173 3 48 328 51 328 2.54e-61 200
Msa0818220 MtrunA17_Chr7g0232161 36.111 288 177 3 3 289 13 294 1.91e-60 197
Msa0818220 MtrunA17_Chr1g0179801 34.734 357 207 9 14 355 27 372 2.13e-60 199
Msa0818220 MtrunA17_Chr5g0424211 34.069 317 197 5 14 325 6 315 2.00e-59 195
Msa0818220 MtrunA17_Chr7g0220001 35.976 328 189 8 24 345 17 329 2.55e-59 194
Msa0818220 MtrunA17_Chr3g0102041 36.190 315 193 6 23 335 14 322 2.71e-59 195
Msa0818220 MtrunA17_Chr4g0064781 36.429 280 171 2 49 328 50 322 7.21e-59 194
Msa0818220 MtrunA17_Chr7g0250511 35.671 328 200 7 16 340 16 335 7.77e-59 194
Msa0818220 MtrunA17_Chr1g0184161 34.375 320 199 7 20 337 10 320 2.20e-58 192
Msa0818220 MtrunA17_Chr2g0311921 33.815 346 218 5 14 355 19 357 2.42e-58 192
Msa0818220 MtrunA17_Chr1g0184151 35.110 319 196 7 20 336 10 319 2.42e-58 192
Msa0818220 MtrunA17_Chr1g0184101 35.802 324 195 8 20 341 9 321 2.21e-57 189
Msa0818220 MtrunA17_Chr1g0162351 34.375 352 203 10 24 355 46 389 2.22e-57 191
Msa0818220 MtrunA17_Chr8g0336751 35.882 340 206 6 14 349 59 390 2.71e-57 191
Msa0818220 MtrunA17_Chr7g0266651 35.912 362 206 9 5 355 15 361 3.73e-57 190
Msa0818220 MtrunA17_Chr8g0370721 35.315 286 180 3 44 328 47 328 7.75e-57 189
Msa0818220 MtrunA17_Chr5g0420721 36.290 248 156 1 108 355 4 249 1.06e-56 185
Msa0818220 MtrunA17_Chr1g0162321 34.473 351 202 10 25 355 47 389 1.17e-56 189
Msa0818220 MtrunA17_Chr3g0114871 37.091 275 164 4 14 286 7 274 1.34e-56 186
Msa0818220 MtrunA17_Chr7g0220011 33.742 326 199 7 24 345 15 327 1.78e-56 187
Msa0818220 MtrunA17_Chr7g0265221 33.048 351 210 9 25 357 38 381 1.84e-56 188
Msa0818220 MtrunA17_Chr8g0336851 32.948 346 218 6 14 355 28 363 2.91e-56 187
Msa0818220 MtrunA17_Chr4g0045441 35.652 345 196 12 29 355 8 344 8.68e-56 186
Msa0818220 MtrunA17_Chr7g0235951 33.429 350 215 8 14 355 33 372 1.07e-55 186
Msa0818220 MtrunA17_Chr1g0184121 34.688 320 199 7 18 335 7 318 1.79e-55 185
Msa0818220 MtrunA17_Chr3g0126741 33.434 332 211 6 11 339 20 344 2.38e-55 185
Msa0818220 MtrunA17_Chr8g0336781 32.394 355 227 6 5 355 54 399 4.65e-55 185
Msa0818220 MtrunA17_Chr1g0162361 33.711 353 192 11 25 355 4 336 5.77e-55 183
Msa0818220 MtrunA17_Chr2g0311761 32.370 346 223 5 14 355 33 371 7.46e-55 184
Msa0818220 MtrunA17_Chr8g0348081 34.603 315 195 5 45 355 56 363 8.48e-55 184
Msa0818220 MtrunA17_Chr2g0311831 33.526 346 218 6 14 355 33 370 1.36e-54 183
Msa0818220 MtrunA17_Chr5g0412671 35.780 327 199 6 15 336 5 325 2.14e-54 182
Msa0818220 MtrunA17_Chr2g0314371 35.783 313 169 7 14 303 17 320 3.29e-54 181
Msa0818220 MtrunA17_Chr1g0184111 34.472 322 199 8 18 336 7 319 4.65e-54 181
Msa0818220 MtrunA17_Chr2g0311691 33.333 360 222 9 5 355 18 368 6.19e-54 181
Msa0818220 MtrunA17_Chr3g0145181 33.010 309 197 5 44 348 44 346 8.68e-54 181
Msa0818220 MtrunA17_Chr4g0045451 35.714 322 177 12 29 329 8 320 1.15e-53 180
Msa0818220 MtrunA17_Chr8g0336631 32.378 349 217 8 14 355 28 364 1.24e-53 181
Msa0818220 MtrunA17_Chr5g0412651 35.385 325 203 7 15 336 5 325 1.73e-53 179
Msa0818220 MtrunA17_Chr1g0204181 35.016 317 193 6 24 333 37 347 2.17e-53 180
Msa0818220 MtrunA17_Chr4g0066121 34.535 333 199 10 14 339 28 348 2.64e-53 180
Msa0818220 MtrunA17_Chr5g0412681 36.513 304 178 7 36 336 21 312 4.67e-53 178
Msa0818220 MtrunA17_Chr8g0336861 32.471 348 219 8 14 355 28 365 4.73e-53 179
Msa0818220 MtrunA17_Chr4g0050031 33.428 353 222 6 10 355 19 365 6.04e-53 179
Msa0818220 MtrunA17_Chr6g0474391 34.161 322 189 7 24 333 42 352 1.17e-52 178
Msa0818220 MtrunA17_Chr6g0488511 36.918 279 159 7 49 322 3 269 1.90e-52 176
Msa0818220 MtrunA17_Chr4g0045431 33.043 345 205 11 29 355 8 344 3.58e-52 176
Msa0818220 MtrunA17_Chr6g0472861 33.983 359 198 11 14 351 28 368 4.06e-52 177
Msa0818220 MtrunA17_Chr4g0045471 32.670 352 212 11 22 355 1 345 7.89e-52 176
Msa0818220 MtrunA17_Chr8g0336761 31.609 348 220 8 14 355 28 363 7.97e-52 176
Msa0818220 MtrunA17_Chr2g0311681 31.880 367 218 11 5 355 18 368 8.91e-52 176
Msa0818220 MtrunA17_Chr7g0239091 32.277 347 218 5 10 355 120 450 9.41e-52 178
Msa0818220 MtrunA17_Chr2g0311701 31.593 364 223 11 5 355 24 374 9.72e-52 176
Msa0818220 MtrunA17_Chr8g0364471 31.389 360 227 8 2 352 21 369 1.41e-51 175
Msa0818220 MtrunA17_Chr1g0161041 35.207 338 200 9 5 336 51 375 2.60e-51 175
Msa0818220 MtrunA17_Chr1g0161081 36.556 331 187 9 14 336 37 352 4.59e-51 174
Msa0818220 MtrunA17_Chr1g0184241 31.487 343 220 6 5 344 25 355 2.07e-50 172
Msa0818220 MtrunA17_Chr3g0093761 32.857 350 212 10 14 355 18 352 1.33e-49 170
Msa0818220 MtrunA17_Chr1g0191201 34.539 304 179 6 50 341 54 349 1.51e-49 170
Msa0818220 MtrunA17_Chr3g0145201 32.581 310 199 5 43 348 678 981 1.93e-49 178
Msa0818220 MtrunA17_Chr3g0093751 32.764 351 212 11 14 355 18 353 4.42e-49 168
Msa0818220 MtrunA17_Chr2g0311631 33.033 333 200 9 14 336 22 341 4.18e-48 166
Msa0818220 MtrunA17_Chr2g0311861 32.174 345 204 8 14 355 29 346 4.92e-48 165
Msa0818220 MtrunA17_Chr3g0093741 31.322 348 221 8 14 355 18 353 9.77e-48 165
Msa0818220 MtrunA17_Chr2g0332191 32.209 326 193 7 22 336 25 333 2.68e-47 164
Msa0818220 MtrunA17_Chr7g0225881 32.584 356 204 11 14 351 28 365 3.24e-47 164
Msa0818220 MtrunA17_Chr8g0351101 30.606 330 193 6 22 333 30 341 4.84e-47 163
Msa0818220 MtrunA17_Chr2g0311741 33.226 310 196 7 48 355 26 326 4.97e-47 162
Msa0818220 MtrunA17_Chr4g0045461 36.190 315 181 9 29 328 8 317 5.42e-47 163
Msa0818220 MtrunA17_Chr1g0161111 34.043 329 198 9 14 336 96 411 9.23e-47 164
Msa0818220 MtrunA17_Chr7g0265351 34.154 325 179 10 44 355 34 336 1.01e-46 162
Msa0818220 MtrunA17_Chr1g0187831 30.919 359 230 9 7 355 23 373 1.11e-46 163
Msa0818220 MtrunA17_Chr8g0384461 29.360 344 218 8 11 343 14 343 2.54e-45 159
Msa0818220 MtrunA17_Chr1g0167911 33.234 334 209 8 7 336 13 336 3.74e-45 158
Msa0818220 MtrunA17_Chr8g0335411 32.670 352 219 9 12 355 31 372 4.31e-45 158
Msa0818220 MtrunA17_Chr2g0319491 33.333 291 175 7 49 337 33 306 5.94e-45 157
Msa0818220 MtrunA17_Chr3g0125421 33.333 339 203 8 15 341 5 332 9.32e-45 157
Msa0818220 MtrunA17_Chr1g0187811 29.714 350 226 9 18 355 151 492 1.45e-44 159
Msa0818220 MtrunA17_Chr1g0187821 30.372 349 228 8 14 355 29 369 2.40e-44 156
Msa0818220 MtrunA17_Chr2g0311711 30.792 341 216 9 5 336 22 351 5.78e-44 155
Msa0818220 MtrunA17_Chr4g0066991 30.372 349 207 8 14 355 33 352 1.77e-43 154
Msa0818220 MtrunA17_Chr3g0130391 31.230 317 205 5 24 333 44 354 4.76e-43 153
Msa0818220 MtrunA17_Chr1g0167961 31.714 350 224 8 5 349 26 365 5.05e-43 153
Msa0818220 MtrunA17_Chr8g0354261 30.000 350 228 8 14 355 33 373 5.68e-43 153
Msa0818220 MtrunA17_Chr7g0247991 32.861 353 217 10 12 355 31 372 5.79e-43 153
Msa0818220 MtrunA17_Chr8g0354241 28.736 348 235 6 14 355 33 373 1.55e-42 152
Msa0818220 MtrunA17_Chr7g0236011 32.194 351 218 10 14 355 33 372 2.14e-42 151
Msa0818220 MtrunA17_Chr3g0105281 33.333 309 164 9 40 337 25 302 5.72e-42 149
Msa0818220 MtrunA17_Chr1g0167951 30.791 354 228 8 7 355 13 354 6.88e-42 149
Msa0818220 MtrunA17_Chr2g0285931 31.366 322 188 12 36 337 6 314 3.58e-41 147
Msa0818220 MtrunA17_Chr4g0055591 29.261 352 223 8 14 355 25 360 6.81e-40 144
Msa0818220 MtrunA17_Chr8g0358941 30.960 323 188 11 33 337 9 314 2.47e-39 142
Msa0818220 MtrunA17_Chr3g0092531 33.557 298 187 8 49 344 6 294 1.60e-38 139
Msa0818220 MtrunA17_Chr4g0011311 32.342 269 168 7 12 277 31 288 2.12e-38 139
Msa0818220 MtrunA17_Chr4g0053251 30.690 290 174 7 47 315 6 289 2.96e-36 134
Msa0818220 MtrunA17_Chr8g0384481 28.840 319 210 8 49 358 59 369 3.97e-36 134
Msa0818220 MtrunA17_Chr4g0055911 33.443 305 180 10 45 336 5 299 1.15e-35 132
Msa0818220 MtrunA17_Chr4g0075471 47.244 127 65 1 212 336 28 154 1.69e-35 127
Msa0818220 MtrunA17_Chr1g0167931 28.329 353 201 8 7 355 13 317 4.48e-35 130
Msa0818220 MtrunA17_Chr5g0420881 40.559 143 85 0 213 355 1 143 7.03e-35 125
Msa0818220 MtrunA17_Chr7g0235981 33.091 275 171 4 87 355 59 326 4.23e-34 128
Msa0818220 MtrunA17_Chr2g0313111 28.617 311 188 12 40 337 17 306 4.18e-33 125
Msa0818220 MtrunA17_Chr4g0055871 32.459 305 178 11 45 336 5 294 8.39e-33 124
Msa0818220 MtrunA17_Chr6g0486831 30.945 307 185 11 51 336 20 320 1.62e-32 124
Msa0818220 MtrunA17_Chr8g0389941 30.877 285 173 9 72 336 51 331 1.78e-32 124
Msa0818220 MtrunA17_Chr3g0126761 37.931 174 106 2 165 338 43 214 1.15e-31 119
Msa0818220 MtrunA17_Chr4g0068891 27.974 311 204 8 34 337 5 302 2.33e-31 120
Msa0818220 MtrunA17_Chr1g0148771 29.293 297 188 9 44 336 58 336 5.08e-31 120
Msa0818220 MtrunA17_Chr8g0336801 41.379 145 81 2 214 355 12 155 8.50e-30 112
Msa0818220 MtrunA17_Chr4g0052251 28.520 277 182 11 72 337 43 314 3.67e-29 115
Msa0818220 MtrunA17_Chr5g0394071 36.000 175 101 4 168 341 4 168 2.41e-28 108
Msa0818220 MtrunA17_Chr8g0375661 35.294 153 97 2 11 162 14 165 1.06e-27 107
Msa0818220 MtrunA17_Chr7g0233661 44.275 131 66 2 211 341 19 142 1.11e-27 106
Msa0818220 MtrunA17_Chr8g0362741 30.483 269 158 9 12 277 31 273 1.25e-27 109
Msa0818220 MtrunA17_Chr4g0064771 33.333 162 107 1 167 328 27 187 2.35e-27 107
Msa0818220 MtrunA17_Chr1g0194321 28.923 325 193 13 37 337 4 314 3.19e-27 110
Msa0818220 MtrunA17_Chr8g0375641 34.356 163 99 3 11 169 14 172 3.77e-27 105
Msa0818220 MtrunA17_Chr4g0037611 38.415 164 89 5 176 337 1 154 3.99e-26 103
Msa0818220 MtrunA17_Chr5g0407781 25.773 291 199 5 48 337 4 278 1.63e-25 104
Msa0818220 MtrunA17_Chr8g0348951 28.339 307 194 10 46 339 2 295 1.92e-25 104
Msa0818220 MtrunA17_Chr5g0407731 26.804 291 194 6 49 337 33 306 7.97e-25 103
Msa0818220 MtrunA17_Chr8g0336831 31.579 190 124 3 45 233 56 240 1.26e-24 100
Msa0818220 MtrunA17_Chr1g0170631 32.474 194 124 4 165 355 2 191 1.00e-23 97.1
Msa0818220 MtrunA17_Chr1g0158011 31.429 175 115 4 164 335 68 240 3.03e-23 97.4
Msa0818220 MtrunA17_Chr4g0004061 28.834 326 195 12 44 347 4 314 1.94e-22 96.3
Msa0818220 MtrunA17_Chr8g0364171 40.351 114 65 2 164 277 16 126 7.38e-22 90.5
Msa0818220 MtrunA17_Chr7g0247741 28.462 260 162 9 74 324 30 274 1.63e-21 93.6
Msa0818220 MtrunA17_Chr8g0336871 34.270 178 105 4 177 351 1 169 1.77e-21 90.1
Msa0818220 MtrunA17_Chr4g0004071 26.710 307 207 9 44 343 4 299 1.67e-20 90.9
Msa0818220 MtrunA17_Chr8g0375581 57.812 64 27 0 210 273 22 85 3.19e-20 84.0
Msa0818220 MtrunA17_Chr1g0161101 47.573 103 43 3 208 309 401 493 3.23e-20 91.7
Msa0818220 MtrunA17_Chr5g0420891 30.065 153 102 2 14 166 12 159 5.88e-20 85.9
Msa0818220 MtrunA17_Chr1g0158021 27.039 233 156 6 40 269 40 261 7.32e-20 87.8
Msa0818220 MtrunA17_Chr1g0158031 32.099 162 101 5 178 335 3 159 3.49e-19 84.3
Msa0818220 MtrunA17_Chr3g0092581 33.117 154 98 4 191 343 16 165 3.51e-19 84.3
Msa0818220 MtrunA17_Chr3g0138351 24.590 305 199 7 49 336 7 297 1.14e-18 85.5
Msa0818220 MtrunA17_Chr2g0293931 32.335 167 102 7 180 337 22 186 4.15e-18 82.0
Msa0818220 MtrunA17_Chr4g0075431 33.333 162 86 6 49 204 4 149 1.71e-17 79.3
Msa0818220 MtrunA17_Chr8g0375591 34.513 113 74 0 14 126 11 123 2.49e-17 77.8
Msa0818220 MtrunA17_Chr4g0009561 23.397 312 207 10 43 336 1 298 4.43e-16 78.2
Msa0818220 MtrunA17_Chr4g0009541 22.973 296 205 7 70 354 29 312 7.82e-16 77.4
Msa0818220 MtrunA17_Chr8g0364161 34.091 132 78 4 14 141 33 159 4.65e-15 72.8
Msa0818220 MtrunA17_Chr1g0167921 39.450 109 63 2 168 276 51 156 5.50e-15 72.4
Msa0818220 MtrunA17_Chr2g0319521 33.036 112 72 2 166 277 16 124 1.39e-14 70.1
Msa0818220 MtrunA17_Chr7g0235991 30.405 148 97 3 49 195 21 163 1.79e-14 71.2
Msa0818220 MtrunA17_Chr7g0256741 27.157 313 208 13 49 351 10 312 2.18e-14 73.2
Msa0818220 MtrunA17_Chr2g0311611 41.667 72 34 2 213 277 1 71 7.31e-14 66.2
Msa0818220 MtrunA17_Chr8g0340641 22.901 262 187 5 63 309 80 341 1.96e-13 70.9
Msa0818220 MtrunA17_Chr8g0336791 29.412 136 92 2 45 179 56 188 2.21e-13 68.2
Msa0818220 MtrunA17_Chr7g0219991 33.019 106 68 1 167 272 249 351 3.45e-13 70.1
Msa0818220 MtrunA17_Chr7g0219991 30.612 147 90 4 24 166 15 153 8.61e-11 62.8
Msa0818220 MtrunA17_Chr1g0148781 24.013 304 200 11 53 340 17 305 9.23e-13 68.6
Msa0818220 MtrunA17_Chr2g0311641 30.147 136 88 3 14 147 22 152 1.67e-12 65.1
Msa0818220 MtrunA17_Chr4g0037601 37.805 82 49 1 31 112 24 103 5.29e-12 63.5
Msa0818220 MtrunA17_Chr2g0293941 40.244 82 38 3 48 128 18 89 4.49e-11 60.8
Msa0818220 MtrunA17_Chr1g0170641 28.477 151 98 6 19 166 18 161 7.57e-11 60.5
Msa0818220 MtrunA17_Chr2g0319531 30.909 110 67 4 41 145 31 136 9.54e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0818220 AT3G11180.1 68.994 358 103 2 5 358 47 400 0.0 511
Msa0818220 AT5G05600.1 67.978 356 114 0 3 358 16 371 0.0 509
Msa0818220 AT3G11180.2 68.895 344 99 2 5 344 47 386 9.11e-176 494
Msa0818220 AT3G55970.1 66.017 359 117 3 5 358 5 363 6.46e-175 490
Msa0818220 AT2G38240.1 58.286 350 139 3 7 354 5 349 3.41e-154 437
Msa0818220 AT5G05600.2 67.273 275 90 0 3 277 16 290 1.26e-137 393
Msa0818220 AT3G55970.2 67.626 278 85 3 5 277 5 282 1.56e-134 385
Msa0818220 AT4G10500.1 40.774 336 188 7 25 357 20 347 9.88e-80 248
Msa0818220 AT1G17020.1 35.897 351 221 3 7 355 9 357 9.12e-79 246
Msa0818220 AT4G10490.1 41.667 324 171 9 20 336 13 325 1.33e-77 242
Msa0818220 AT4G25300.1 35.484 341 217 2 15 355 18 355 1.66e-76 240
Msa0818220 AT1G78550.1 33.428 353 229 3 5 355 7 355 7.70e-76 238
Msa0818220 AT1G17010.1 35.028 354 220 6 7 355 9 357 8.59e-74 233
Msa0818220 AT5G24530.1 37.107 318 184 7 24 336 14 320 2.82e-71 226
Msa0818220 AT4G22880.1 36.182 351 204 7 14 352 7 349 5.34e-71 226
Msa0818220 AT4G22880.2 36.182 351 204 7 14 352 7 349 5.34e-71 226
Msa0818220 AT4G22880.3 36.182 351 204 7 14 352 7 349 5.34e-71 226
Msa0818220 AT3G21420.1 37.195 328 199 5 14 336 17 342 2.77e-70 224
Msa0818220 AT4G16330.2 39.103 312 170 7 48 354 66 362 4.42e-68 218
Msa0818220 AT4G25310.1 35.569 343 211 6 15 355 18 352 1.28e-67 217
Msa0818220 AT5G08640.2 36.391 327 197 5 14 336 6 325 3.72e-67 215
Msa0818220 AT5G08640.1 36.391 327 197 5 14 336 6 325 3.72e-67 215
Msa0818220 AT3G51240.1 38.065 310 184 6 28 335 18 321 3.48e-64 208
Msa0818220 AT1G12010.1 35.127 316 191 6 43 356 1 304 1.27e-63 205
Msa0818220 AT3G13610.1 34.483 348 208 9 14 355 27 360 2.29e-63 206
Msa0818220 AT3G60290.1 35.965 342 209 7 17 355 19 353 1.28e-62 204
Msa0818220 AT1G62380.1 36.949 295 173 5 43 336 1 283 4.08e-62 201
Msa0818220 AT1G78550.2 34.545 275 178 1 81 355 5 277 1.01e-61 199
Msa0818220 AT2G44800.1 36.170 329 198 8 16 340 18 338 6.78e-61 199
Msa0818220 AT1G05010.1 36.076 316 185 8 48 356 3 308 4.41e-60 196
Msa0818220 AT5G54000.2 35.404 322 199 6 23 339 17 334 1.27e-59 196
Msa0818220 AT1G49390.1 36.140 285 180 2 48 332 44 326 4.21e-59 194
Msa0818220 AT5G20400.1 34.516 310 195 5 23 328 17 322 7.83e-59 194
Msa0818220 AT2G36690.2 35.143 350 211 9 14 355 21 362 2.19e-58 193
Msa0818220 AT2G36690.1 35.143 350 211 9 14 355 21 362 2.19e-58 193
Msa0818220 AT1G77330.1 37.075 294 168 4 49 336 3 285 2.30e-58 191
Msa0818220 AT5G20550.1 33.866 313 194 5 23 328 17 323 2.37e-57 190
Msa0818220 AT4G16330.1 40.784 255 140 5 104 354 9 256 5.51e-57 186
Msa0818220 AT1G55290.1 32.948 346 211 9 14 352 26 357 1.08e-56 189
Msa0818220 AT3G19010.1 32.749 342 207 9 29 355 8 341 2.13e-55 185
Msa0818220 AT3G19010.4 32.749 342 207 9 29 355 8 341 2.13e-55 185
Msa0818220 AT3G19000.1 36.615 325 184 8 46 355 29 346 9.19e-55 183
Msa0818220 AT1G06650.2 34.561 353 210 8 14 355 26 368 1.85e-54 183
Msa0818220 AT4G25420.1 34.462 325 199 7 24 341 39 356 3.00e-54 183
Msa0818220 AT1G06620.1 34.097 349 212 7 14 355 27 364 3.09e-54 182
Msa0818220 AT5G54000.1 37.500 256 157 2 85 339 1 254 5.37e-54 179
Msa0818220 AT2G19590.1 36.749 283 165 6 42 322 4 274 1.44e-53 179
Msa0818220 AT3G12900.1 34.756 328 196 8 14 336 22 336 1.51e-53 181
Msa0818220 AT1G49390.2 36.694 248 156 1 85 332 1 247 6.15e-53 176
Msa0818220 AT1G06640.1 35.127 353 208 8 14 355 26 368 1.23e-51 176
Msa0818220 AT5G63600.1 30.421 309 198 5 34 336 12 309 1.03e-50 172
Msa0818220 AT4G25310.2 32.092 349 197 8 11 355 12 324 2.14e-50 171
Msa0818220 AT5G43440.1 32.857 350 218 8 14 355 24 364 5.54e-50 171
Msa0818220 AT5G63600.2 30.645 310 197 6 34 336 12 310 7.35e-50 170
Msa0818220 AT3G51240.2 41.102 236 133 4 102 335 6 237 7.73e-50 168
Msa0818220 AT5G63590.1 34.694 294 177 5 48 333 13 299 3.40e-49 167
Msa0818220 AT5G51810.1 31.395 344 205 9 25 356 42 366 7.14e-49 169
Msa0818220 AT2G30840.1 33.521 355 223 9 7 355 14 361 2.44e-48 167
Msa0818220 AT1G15550.1 34.343 297 178 6 45 336 53 337 6.44e-48 166
Msa0818220 AT1G03410.2 35.030 334 195 10 14 336 20 342 1.04e-47 165
Msa0818220 AT5G07200.1 32.110 327 206 6 25 341 37 357 1.92e-47 165
Msa0818220 AT1G03410.1 35.030 334 195 10 14 336 57 379 2.39e-47 165
Msa0818220 AT1G60980.1 32.219 329 200 8 23 339 34 351 3.62e-47 164
Msa0818220 AT1G04350.1 31.714 350 219 10 14 355 22 359 1.95e-46 162
Msa0818220 AT2G19590.2 37.903 248 143 5 77 322 21 259 4.03e-46 159
Msa0818220 AT3G19010.3 30.702 342 184 9 29 355 8 311 4.15e-46 160
Msa0818220 AT5G43450.1 34.234 333 195 10 14 336 24 342 6.78e-46 160
Msa0818220 AT5G59540.1 31.348 319 193 9 49 355 61 365 1.78e-45 159
Msa0818220 AT1G80340.1 34.915 295 173 8 48 336 49 330 3.77e-45 158
Msa0818220 AT2G30840.3 33.239 355 218 10 7 355 14 355 5.00e-45 158
Msa0818220 AT5G59530.1 31.933 357 211 11 14 355 24 363 5.45e-45 158
Msa0818220 AT1G06645.1 32.861 353 213 8 14 355 39 378 9.68e-45 158
Msa0818220 AT5G07480.1 31.940 335 208 7 15 340 14 337 1.31e-44 157
Msa0818220 AT1G44090.1 34.000 300 190 5 48 341 62 359 2.42e-44 157
Msa0818220 AT2G30830.1 32.558 344 215 8 12 349 19 351 5.27e-44 155
Msa0818220 AT5G12270.1 31.884 345 212 9 22 357 30 360 1.30e-43 154
Msa0818220 AT3G19000.2 37.652 247 133 7 46 277 29 269 3.22e-43 151
Msa0818220 AT1G80330.1 33.770 305 167 11 48 336 48 333 4.51e-43 153
Msa0818220 AT1G04380.1 32.686 309 189 8 49 351 45 340 6.99e-42 149
Msa0818220 AT3G61400.1 31.965 341 214 9 7 336 18 351 9.49e-42 150
Msa0818220 AT1G06650.1 34.799 273 167 5 14 282 26 291 1.51e-41 148
Msa0818220 AT4G25300.2 36.316 190 120 1 166 355 73 261 8.97e-41 144
Msa0818220 AT4G21200.1 31.715 309 176 10 38 337 32 314 1.69e-40 145
Msa0818220 AT5G63595.1 31.387 274 161 5 40 313 16 262 1.82e-40 144
Msa0818220 AT1G03400.1 31.579 342 200 10 7 336 13 332 3.48e-40 145
Msa0818220 AT2G25450.1 30.704 355 220 11 12 355 19 358 4.08e-40 145
Msa0818220 AT5G63580.2 36.207 232 137 4 48 277 18 240 7.77e-40 141
Msa0818220 AT1G06620.2 33.208 265 168 5 14 277 27 283 1.84e-39 141
Msa0818220 AT4G21690.1 30.820 305 186 9 44 336 41 332 2.34e-39 143
Msa0818220 AT4G25420.2 33.716 261 159 7 24 277 39 292 4.01e-39 141
Msa0818220 AT5G63580.1 35.776 232 138 4 46 275 16 238 4.41e-39 139
Msa0818220 AT3G19010.2 33.208 265 155 8 29 278 8 265 6.36e-39 140
Msa0818220 AT1G30040.1 30.667 300 188 10 45 337 27 313 6.89e-39 141
Msa0818220 AT1G06640.2 35.821 268 161 5 14 277 26 286 8.65e-39 140
Msa0818220 AT1G06640.3 35.985 264 158 5 14 273 26 282 2.14e-38 139
Msa0818220 AT5G43440.2 33.333 270 168 6 14 279 24 285 2.70e-38 139
Msa0818220 AT5G43935.1 31.208 298 167 8 46 336 16 282 3.51e-38 138
Msa0818220 AT1G78440.1 30.492 305 177 12 49 337 18 303 3.57e-38 139
Msa0818220 AT3G50210.4 32.707 266 161 8 66 315 32 295 1.23e-37 138
Msa0818220 AT3G50210.1 32.707 266 161 8 66 315 32 295 1.23e-37 138
Msa0818220 AT3G50210.3 32.707 266 161 8 66 315 32 295 1.23e-37 138
Msa0818220 AT2G30840.2 32.967 273 173 6 7 276 14 279 8.32e-36 132
Msa0818220 AT1G50960.1 28.896 308 199 8 34 337 24 315 1.00e-35 133
Msa0818220 AT5G51810.2 31.086 267 166 6 25 284 42 297 1.12e-35 132
Msa0818220 AT2G34555.1 30.303 297 186 11 49 338 27 309 2.74e-35 132
Msa0818220 AT1G03400.2 29.459 370 199 11 7 336 13 360 1.72e-34 130
Msa0818220 AT5G43450.2 33.829 269 159 8 14 276 24 279 1.03e-33 126
Msa0818220 AT3G49620.1 30.132 302 179 10 38 315 23 316 6.06e-33 126
Msa0818220 AT3G49630.1 29.897 291 172 10 49 315 9 291 1.30e-32 124
Msa0818220 AT3G49630.3 30.337 267 161 8 66 315 29 287 1.47e-32 124
Msa0818220 AT3G61400.2 31.655 278 176 7 7 277 18 288 5.24e-32 122
Msa0818220 AT5G59540.2 30.802 237 143 7 49 277 61 284 2.69e-31 120
Msa0818220 AT1G04380.2 33.047 233 142 6 49 279 45 265 3.31e-30 117
Msa0818220 AT3G46500.5 28.197 305 200 9 45 336 10 308 1.18e-29 116
Msa0818220 AT5G58660.1 32.203 295 161 11 48 316 33 314 1.76e-29 116
Msa0818220 AT4G23340.1 33.968 315 170 13 41 339 2 294 1.02e-28 114
Msa0818220 AT3G46490.1 28.808 302 185 9 57 336 22 315 7.12e-28 112
Msa0818220 AT5G07480.2 34.555 191 112 3 158 340 43 228 1.52e-27 108
Msa0818220 AT1G47990.1 28.115 313 188 11 42 337 8 300 3.51e-26 107
Msa0818220 AT1G02400.1 29.195 298 193 11 48 337 23 310 8.94e-26 106
Msa0818220 AT1G30040.2 30.000 240 148 10 45 277 27 253 1.46e-25 104
Msa0818220 AT3G46490.2 28.889 270 162 9 57 304 22 283 1.12e-24 102
Msa0818220 AT3G50210.2 33.939 165 103 3 156 315 50 213 3.87e-24 99.8
Msa0818220 AT3G47190.1 28.378 296 182 9 30 310 11 291 4.20e-24 101
Msa0818220 AT3G46500.7 28.470 281 172 12 45 307 10 279 8.24e-24 100
Msa0818220 AT3G49630.2 32.941 170 101 4 152 315 56 218 7.74e-23 96.7
Msa0818220 AT4G16765.6 30.493 223 142 6 125 336 15 235 1.93e-22 95.1
Msa0818220 AT4G16765.1 30.493 223 142 6 125 336 15 235 1.93e-22 95.1
Msa0818220 AT4G16765.2 30.493 223 142 6 125 336 15 235 1.93e-22 95.1
Msa0818220 AT5G58660.2 31.418 261 139 11 48 283 33 278 2.95e-22 95.5
Msa0818220 AT1G35190.1 31.061 264 157 11 72 314 29 288 5.39e-22 95.5
Msa0818220 AT4G16765.3 31.163 215 135 6 125 328 15 227 1.88e-21 92.0
Msa0818220 AT1G35190.2 31.679 262 135 11 72 314 29 265 2.04e-21 93.6
Msa0818220 AT1G14130.1 27.815 302 188 8 49 342 9 288 2.56e-21 93.2
Msa0818220 AT1G14120.2 27.483 302 176 8 42 328 1 274 1.28e-20 91.3
Msa0818220 AT1G14120.1 27.483 302 176 8 42 328 1 274 1.28e-20 91.3
Msa0818220 AT1G14120.3 27.483 302 176 8 42 328 1 274 1.28e-20 91.3
Msa0818220 AT5G51310.1 28.000 275 167 9 67 324 17 277 3.09e-20 90.5
Msa0818220 AT4G23340.2 36.932 176 102 6 171 339 3 176 4.56e-19 84.7
Msa0818220 AT4G16770.1 30.417 240 143 9 43 267 16 246 5.63e-18 83.2
Msa0818220 AT3G46500.10 29.101 189 124 5 156 336 48 234 9.14e-18 82.4
Msa0818220 AT3G46500.1 29.101 189 124 5 156 336 48 234 9.14e-18 82.4
Msa0818220 AT3G46500.4 29.885 174 114 4 169 336 1 172 1.12e-17 80.5
Msa0818220 AT4G03070.1 25.000 304 189 11 72 356 38 321 7.31e-17 80.9
Msa0818220 AT1G52820.1 23.750 320 214 9 49 356 12 313 1.37e-16 80.1
Msa0818220 AT4G22870.1 39.796 98 55 2 246 339 2 99 4.33e-15 71.2
Msa0818220 AT4G16765.4 30.994 171 106 5 125 284 15 184 4.50e-15 73.2
Msa0818220 AT3G46480.1 27.500 280 170 10 63 331 6 263 5.84e-15 74.7
Msa0818220 AT4G16765.5 37.607 117 66 3 225 336 75 189 6.08e-15 73.2
Msa0818220 AT1G52800.1 25.532 329 215 12 39 356 1 310 1.67e-13 70.9
Msa0818220 AT4G22870.2 34.454 119 64 4 241 352 35 146 3.79e-13 67.0
Msa0818220 AT3G46500.3 28.834 163 100 7 156 307 48 205 1.72e-12 66.6
Msa0818220 AT3G46500.9 27.225 191 101 7 156 336 48 210 2.32e-12 66.2
Msa0818220 AT3G46500.6 29.530 149 91 6 168 307 31 174 5.92e-12 64.3
Msa0818220 AT3G46500.8 29.530 149 91 6 168 307 31 174 5.92e-12 64.3

Find 122 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTCCTGATTGGTAATT+TGG 0.022757 5_3:-53805159 Msa0818220:three_prime_UTR
ATCTTTGTACCCTCACTTTC+TGG 0.085591 5_3:+53805213 None:intergenic
TCAATGTATATGAGTATTTA+TGG 0.132552 5_3:-53804997 Msa0818220:three_prime_UTR
CTCTATTGGAATGTCACTTT+TGG 0.185657 5_3:+53805636 None:intergenic
AAAGATTGAACTGGGATTAT+TGG 0.191708 5_3:+53809959 None:intergenic
GTCAATTATTGGGATATTAT+TGG 0.196961 5_3:+53809850 None:intergenic
CTTCTCTGCCTCCCTCTTGC+AGG 0.218861 5_3:-53809511 Msa0818220:intron
CCAGGGCAATGTTTGTAATA+TGG 0.229960 5_3:-53805086 Msa0818220:three_prime_UTR
AATGCATTTATTGTCAATAT+TGG 0.257707 5_3:-53807045 Msa0818220:CDS
AGGGAGGTGTTTGATGAATA+TGG 0.259252 5_3:-53807342 Msa0818220:CDS
AAACCTCTAAGGTCAATTAT+TGG 0.261828 5_3:+53809839 None:intergenic
CAACTCTGGCTGTGGACATT+TGG 0.276113 5_3:+53807188 None:intergenic
TTATCTTCCTTTGTCTTTGA+AGG 0.276389 5_3:-53809549 Msa0818220:CDS
GGGTATAGGGCAGGTTTATC+TGG 0.280408 5_3:+53805592 None:intergenic
AAGTTCGTAAAGGTGATAAT+TGG 0.282376 5_3:-53807089 Msa0818220:CDS
CTTAAATGTTGTTGTTAGAT+AGG 0.286203 5_3:-53805273 Msa0818220:three_prime_UTR
CTCTTCCTGATTGGTAATTT+GGG 0.303010 5_3:-53805158 Msa0818220:three_prime_UTR
CAATATTGGTGATCAAATTC+AGG 0.308629 5_3:-53807031 Msa0818220:intron
AACTCTGGCTGTGGACATTT+GGG 0.311428 5_3:+53807189 None:intergenic
AGTTGGTGTGCGTGTGAGTT+AGG 0.332532 5_3:+53810119 None:intergenic
CCACTTCTCAACCGATGATT+GGG 0.335482 5_3:-53805129 Msa0818220:three_prime_UTR
ATCCCAATAATTGACCTTAG+AGG 0.336722 5_3:-53809842 Msa0818220:CDS
CTATGACCTTTGATGAATAT+AGG 0.350688 5_3:-53805567 Msa0818220:CDS
CAAAGGTCATAGCAGGGTAT+AGG 0.364824 5_3:+53805578 None:intergenic
CTTTCGGATAAAGATTGAAC+TGG 0.371330 5_3:+53809950 None:intergenic
GATTGAATCTATGCAACTTT+CGG 0.372204 5_3:+53809934 None:intergenic
AACCTCTAAGGTCAATTATT+GGG 0.373427 5_3:+53809840 None:intergenic
TCTAAAATAGAGTTTATTGA+TGG 0.387411 5_3:+53809878 None:intergenic
TAGTACTATGTAAACCTCTA+AGG 0.388602 5_3:+53809828 None:intergenic
CCCACTTCTCAACCGATGAT+TGG 0.393246 5_3:-53805130 Msa0818220:three_prime_UTR
AGAAAGGTGCTATTCTTGAT+TGG 0.399483 5_3:-53809592 Msa0818220:CDS
GTGAGGTGAGTTTGTAGGTG+TGG 0.400935 5_3:+53810158 None:intergenic
AATAATATCAACTAGCTAGA+AGG 0.403973 5_3:+53805303 None:intergenic
ACAATAAATGCATTACGAAC+AGG 0.405344 5_3:+53807054 None:intergenic
GGAGGGTGAGGTGAGTTTGT+AGG 0.405857 5_3:+53810153 None:intergenic
GATGCATGCACCATGATTCC+AGG 0.407244 5_3:-53805104 Msa0818220:three_prime_UTR
AAAGGTCATAGCAGGGTATA+GGG 0.409002 5_3:+53805579 None:intergenic
TGAACTGGGATTATTGGTTC+AGG 0.411262 5_3:+53809965 None:intergenic
TAAAGGTGATAATTGGATTA+CGG 0.411535 5_3:-53807082 Msa0818220:CDS
AAGATTGCATGTGAAATTGA+TGG 0.412397 5_3:-53805195 Msa0818220:three_prime_UTR
TCCGAGATGATATGCATGTT+TGG 0.421607 5_3:-53805488 Msa0818220:exon
AGCCTCAGAGATTTGCTTGA+AGG 0.421693 5_3:+53809784 None:intergenic
CGGCTTGTGATTAAATGTTA+AGG 0.422107 5_3:+53805338 None:intergenic
CAAACATTGCCCTGGAATCA+TGG 0.422370 5_3:+53805094 None:intergenic
TTGGTTCAGGCCAATCTTGT+GGG 0.423737 5_3:+53809978 None:intergenic
TGGTGTTAGCCATGATTTGA+TGG 0.425426 5_3:-53809726 Msa0818220:CDS
TCTATCTATAAACCTTGGAT+TGG 0.425871 5_3:-53807280 Msa0818220:CDS
CTGCAAGAGGGAGGCAGAGA+AGG 0.432067 5_3:+53809512 None:intergenic
AAATGATCAGCCCACAAGAT+TGG 0.435138 5_3:-53809988 Msa0818220:CDS
AGACCATGTACTTGATCATC+TGG 0.440312 5_3:+53807114 None:intergenic
GGGGTTTGATATATCTTTGA+GGG 0.441698 5_3:+53809912 None:intergenic
GATGTTTGCCTCTTCCTGAT+TGG 0.442393 5_3:-53805167 Msa0818220:three_prime_UTR
AAGATATTGGTGCTTGCATA+AGG 0.450245 5_3:-53807224 Msa0818220:CDS
CCACAGCCAGAGTTGACTCT+TGG 0.456190 5_3:-53807180 Msa0818220:CDS
ATTGGTTCAGGCCAATCTTG+TGG 0.457991 5_3:+53809977 None:intergenic
TATGATTTGATGTAATGCTT+AGG 0.461018 5_3:-53805032 Msa0818220:three_prime_UTR
TGGATTTAGCTAAGGAAACT+TGG 0.461744 5_3:-53809706 Msa0818220:CDS
CCCAATCATCGGTTGAGAAG+TGG 0.464312 5_3:+53805129 None:intergenic
GGAAAGAGAAAAGGAGGGTG+AGG 0.468511 5_3:+53810141 None:intergenic
TGATGAATATGGGATAGAAT+TGG 0.475949 5_3:-53807331 Msa0818220:CDS
GAAAATTCTCTTCCAATCCA+AGG 0.476253 5_3:+53807268 None:intergenic
TTCTAAGCAATGCAATCTAC+AGG 0.476607 5_3:-53805726 Msa0818220:CDS
CTCTGAGGCTTGTAAAGAGT+GGG 0.480774 5_3:-53809771 Msa0818220:CDS
CTTTGAAGGACTACAACAAA+TGG 0.482191 5_3:-53809535 Msa0818220:CDS
AATAGAGCCAGCAAAACAAT+TGG 0.484781 5_3:-53805620 Msa0818220:CDS
TATTCATCAAAGGTCATAGC+AGG 0.486350 5_3:+53805571 None:intergenic
GTTGGTGTGCGTGTGAGTTA+GGG 0.487166 5_3:+53810120 None:intergenic
TTATCATCACATTCAGATCC+AGG 0.490565 5_3:-53807156 Msa0818220:CDS
GACTACCCAAATTACCAATC+AGG 0.492773 5_3:+53805153 None:intergenic
GGGAGGTGTTTGATGAATAT+GGG 0.498922 5_3:-53807341 Msa0818220:CDS
AAAGTTCTATCTATAAACCT+TGG 0.499746 5_3:-53807285 Msa0818220:CDS
TATAATTGTTTCACTTCCAT+AGG 0.501870 5_3:+53809665 None:intergenic
GTGAGTTAGGGAAAGAGAAA+AGG 0.502992 5_3:+53810132 None:intergenic
TAGCTAAATCCATCAAATCA+TGG 0.503472 5_3:+53809717 None:intergenic
AGTTAGGGAAAGAGAAAAGG+AGG 0.506173 5_3:+53810135 None:intergenic
TGAGGTGAGTTTGTAGGTGT+GGG 0.506190 5_3:+53810159 None:intergenic
ATCAATTAAGCCAGAAAGTG+AGG 0.518620 5_3:-53805223 Msa0818220:three_prime_UTR
TGATTTGATGGATTTAGCTA+AGG 0.519818 5_3:-53809714 Msa0818220:CDS
TTATTGATGGACGGTCACTA+AGG 0.528777 5_3:+53809891 None:intergenic
TTCTTTCAAATTGTTAACCA+TGG 0.533817 5_3:-53809746 Msa0818220:CDS
AGGGGTTTGATATATCTTTG+AGG 0.539325 5_3:+53809911 None:intergenic
AGTAGACTTGGTGTTAAGAA+AGG 0.539816 5_3:-53809608 Msa0818220:CDS
CCAAATTACCAATCAGGAAG+AGG 0.540752 5_3:+53805159 None:intergenic
CCATATTACAAACATTGCCC+TGG 0.541395 5_3:+53805086 None:intergenic
TATTGATGGACGGTCACTAA+GGG 0.546407 5_3:+53809892 None:intergenic
CCAATCATCGGTTGAGAAGT+GGG 0.548694 5_3:+53805130 None:intergenic
GAAGGGTATGGTAGTAGACT+TGG 0.550629 5_3:-53809620 Msa0818220:CDS
GTCATAGCAGGGTATAGGGC+AGG 0.556674 5_3:+53805583 None:intergenic
TTACCAGATGATCAAGTACA+TGG 0.559165 5_3:-53807117 Msa0818220:CDS
CCAAGAGTCAACTCTGGCTG+TGG 0.561608 5_3:+53807180 None:intergenic
GGGATTGTAGAAGAAAGCTA+AGG 0.562257 5_3:+53805657 None:intergenic
TTCATTGACACAGAAACAAA+CGG 0.563576 5_3:+53805427 None:intergenic
TTGTAGTCCTTCAAAGACAA+AGG 0.564851 5_3:+53809542 None:intergenic
GCATGCATCACCCCAATCAT+CGG 0.576316 5_3:+53805118 None:intergenic
GAAAAGCCTATATTCATCAA+AGG 0.580964 5_3:+53805561 None:intergenic
CATGGTCTTCAAGTTCGTAA+AGG 0.581161 5_3:-53807099 Msa0818220:CDS
TCCAAACATGCATATCATCT+CGG 0.581857 5_3:+53805487 None:intergenic
TTTCGGATAAAGATTGAACT+GGG 0.585395 5_3:+53809951 None:intergenic
TCTCTGAGGCTTGTAAAGAG+TGG 0.589060 5_3:-53809772 Msa0818220:CDS
CTAGAAGGAGGTTATATACA+CGG 0.589290 5_3:+53805318 None:intergenic
AAATAGAGTTTATTGATGGA+CGG 0.601584 5_3:+53809882 None:intergenic
TAAGTACTTAAACCTGCAAG+AGG 0.610922 5_3:+53809499 None:intergenic
GTTAGGGAAAGAGAAAAGGA+GGG 0.612106 5_3:+53810136 None:intergenic
ATGCATGCACCATGATTCCA+GGG 0.616013 5_3:-53805103 Msa0818220:three_prime_UTR
AACAAAAGAGTAATGCCACC+TGG 0.618434 5_3:+53807138 None:intergenic
GATAAACCAAGAGTCAACTC+TGG 0.620386 5_3:+53807174 None:intergenic
TCAAATCATGGCTAACACCA+TGG 0.620406 5_3:+53809729 None:intergenic
TACTTAAACCTGCAAGAGGG+AGG 0.625938 5_3:+53809503 None:intergenic
CACTTCTCAACCGATGATTG+GGG 0.638659 5_3:-53805128 Msa0818220:three_prime_UTR
TCAATTAAGCCAGAAAGTGA+GGG 0.644139 5_3:-53805222 Msa0818220:three_prime_UTR
AATATCAACTAGCTAGAAGG+AGG 0.644435 5_3:+53805306 None:intergenic
ATTGATGGACGGTCACTAAG+GGG 0.650972 5_3:+53809893 None:intergenic
AGATATTGGTGCTTGCATAA+GGG 0.652882 5_3:-53807223 Msa0818220:CDS
AACCTTCAAGCAAATCTCTG+AGG 0.652889 5_3:-53809786 Msa0818220:CDS
AATTGGTGAAGTTATGTGAG+AGG 0.660567 5_3:-53807314 Msa0818220:CDS
CAATCATCGGTTGAGAAGTG+GGG 0.663077 5_3:+53805131 None:intergenic
ATTCATCAAAGGTCATAGCA+GGG 0.668718 5_3:+53805572 None:intergenic
AAGTACTTAAACCTGCAAGA+GGG 0.673362 5_3:+53809500 None:intergenic
TCTGAGGCTTGTAAAGAGTG+GGG 0.685796 5_3:-53809770 Msa0818220:CDS
ATTAGAATGAGGGGTCCATG+TGG 0.696122 5_3:-53805538 Msa0818220:CDS
TCATCACATTCAGATCCAGG+TGG 0.726988 5_3:-53807153 Msa0818220:CDS
AGTGCTCTAATATAAATGTG+TGG 0.746903 5_3:+53810053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAATTAAAGATATTAA+CGG - chr5_3:53806339-53806358 Msa0818220:intron 10.0%
!! TATATATTAGTTGAAAAGTA+TGG + chr5_3:53806235-53806254 None:intergenic 15.0%
!!! ATATTCTTATTGATAATGTT+TGG - chr5_3:53808155-53808174 Msa0818220:intron 15.0%
!!! ATAGTATTACGATTTTAAAT+GGG - chr5_3:53808389-53808408 Msa0818220:intron 15.0%
!!! TTTTGCATGATTTTTTTTTT+TGG + chr5_3:53809013-53809032 None:intergenic 15.0%
!! AAATCATTCATACAATTATA+TGG + chr5_3:53809330-53809349 None:intergenic 15.0%
!!! TTAAATTTTCTTGTAAGAGT+TGG + chr5_3:53805046-53805065 None:intergenic 20.0%
!!! TCTAAAATAGAGTTTATTGA+TGG + chr5_3:53805270-53805289 None:intergenic 20.0%
!! TTAGCAAAGAAAATTAGTTA+TGG - chr5_3:53805691-53805710 Msa0818220:CDS 20.0%
!! CGAAATGCATAAATTTATTA+TGG - chr5_3:53805895-53805914 Msa0818220:intron 20.0%
!!! TTCATCTATTTTGTCAAATA+GGG + chr5_3:53806112-53806131 None:intergenic 20.0%
!! AATAGATGAAGTATACAATT+TGG - chr5_3:53806122-53806141 Msa0818220:intron 20.0%
!! AAAAAATGTTTAGTCAGTTT+GGG - chr5_3:53806833-53806852 Msa0818220:intron 20.0%
!! AAATTTAGAGATTAAAGAGT+TGG + chr5_3:53807687-53807706 None:intergenic 20.0%
!! ATTTGTATCCTTAAGTATTA+TGG + chr5_3:53807775-53807794 None:intergenic 20.0%
!!! AATTTTCTTCAAAATGCTTT+TGG - chr5_3:53807893-53807912 Msa0818220:intron 20.0%
!! AATGCATTTATTGTCAATAT+TGG - chr5_3:53808100-53808119 Msa0818220:intron 20.0%
!!! CATAGTATTACGATTTTAAA+TGG - chr5_3:53808388-53808407 Msa0818220:intron 20.0%
!! ATGAAAATTTAGTCATTTGT+GGG + chr5_3:53809187-53809206 None:intergenic 20.0%
!!! TGTTTATTTTGTGTTTGATA+AGG - chr5_3:53809396-53809415 Msa0818220:intron 20.0%
!! TCAATGTATATGAGTATTTA+TGG - chr5_3:53810148-53810167 Msa0818220:five_prime_UTR 20.0%
! AAATAGAGTTTATTGATGGA+CGG + chr5_3:53805266-53805285 None:intergenic 25.0%
! GTCAATTATTGGGATATTAT+TGG + chr5_3:53805298-53805317 None:intergenic 25.0%
! TTCTTTCAAATTGTTAACCA+TGG - chr5_3:53805399-53805418 Msa0818220:three_prime_UTR 25.0%
! TATAATTGTTTCACTTCCAT+AGG + chr5_3:53805483-53805502 None:intergenic 25.0%
! TTTGAATTGTGTACATACAA+CGG - chr5_3:53806075-53806094 Msa0818220:intron 25.0%
!! CTTCATCTATTTTGTCAAAT+AGG + chr5_3:53806113-53806132 None:intergenic 25.0%
! ATAGTGCACATTACAAAAAT+GGG + chr5_3:53806194-53806213 None:intergenic 25.0%
! AATAGTGCACATTACAAAAA+TGG + chr5_3:53806195-53806214 None:intergenic 25.0%
!!! CAAACTGACTAAACATTTTT+TGG + chr5_3:53806834-53806853 None:intergenic 25.0%
! CAAAAAATGTTTAGTCAGTT+TGG - chr5_3:53806832-53806851 Msa0818220:intron 25.0%
! CTTTGTAAAGAATTCATTGA+TGG + chr5_3:53806900-53806919 None:intergenic 25.0%
! TTGAGAAATAGGTAGAAATT+AGG + chr5_3:53806975-53806994 None:intergenic 25.0%
!! ATCATTGAGTCTTTTGTTAA+GGG + chr5_3:53807005-53807024 None:intergenic 25.0%
!! AATCATTGAGTCTTTTGTTA+AGG + chr5_3:53807006-53807025 None:intergenic 25.0%
! CTTAGAAAATTAAAGGCTAA+GGG + chr5_3:53807094-53807113 None:intergenic 25.0%
! GAAGATCCTTAGAAAATTAA+AGG + chr5_3:53807101-53807120 None:intergenic 25.0%
! ATTTAGATACAAAAGGTTGA+GGG + chr5_3:53807257-53807276 None:intergenic 25.0%
! TATTTAGATACAAAAGGTTG+AGG + chr5_3:53807258-53807277 None:intergenic 25.0%
!!! TAAGGGTATTTAGATACAAA+AGG + chr5_3:53807264-53807283 None:intergenic 25.0%
! ATGAATCTCATGAAAATCAA+AGG + chr5_3:53807296-53807315 None:intergenic 25.0%
! TTTGTTTCAACAAAAAAACG+TGG + chr5_3:53807478-53807497 None:intergenic 25.0%
!!! ATGATTTTGGTTCATAAATC+GGG + chr5_3:53807501-53807520 None:intergenic 25.0%
!!! CATGATTTTGGTTCATAAAT+CGG + chr5_3:53807502-53807521 None:intergenic 25.0%
!!! TTTGTATTTTAGCAAAAACG+TGG + chr5_3:53807546-53807565 None:intergenic 25.0%
!!! TCTATTGAATTGTCATTTTG+TGG - chr5_3:53807746-53807765 Msa0818220:intron 25.0%
!!! CTATTGAATTGTCATTTTGT+GGG - chr5_3:53807747-53807766 Msa0818220:intron 25.0%
! AAGGATACAAATTTGAATGT+AGG - chr5_3:53807783-53807802 Msa0818220:intron 25.0%
! AGGATACAAATTTGAATGTA+GGG - chr5_3:53807784-53807803 Msa0818220:intron 25.0%
! AAAGTTCTATCTATAAACCT+TGG - chr5_3:53807860-53807879 Msa0818220:intron 25.0%
! TAAAGGTGATAATTGGATTA+CGG - chr5_3:53808063-53808082 Msa0818220:intron 25.0%
!!! TTGTTATTCGTCAGATTTTT+TGG - chr5_3:53808276-53808295 Msa0818220:intron 25.0%
! AATGAGATGTATCTTTCAAA+AGG + chr5_3:53808312-53808331 None:intergenic 25.0%
! TTACAGTCACAAATTAACTT+AGG + chr5_3:53808650-53808669 None:intergenic 25.0%
! AATTATTGGTCAACATACAT+AGG + chr5_3:53808700-53808719 None:intergenic 25.0%
! AGTATCTTGCTTTCAATTAT+TGG + chr5_3:53808714-53808733 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr5_3:53808792-53808811 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr5_3:53808791-53808810 Msa0818220:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr5_3:53808804-53808823 Msa0818220:intron 25.0%
! GATGAAAATTTAGTCATTTG+TGG + chr5_3:53809188-53809207 None:intergenic 25.0%
! CATTCATACAATTATATGGA+AGG + chr5_3:53809326-53809345 None:intergenic 25.0%
! AATAATATCAACTAGCTAGA+AGG + chr5_3:53809845-53809864 None:intergenic 25.0%
!! CTTAAATGTTGTTGTTAGAT+AGG - chr5_3:53809872-53809891 Msa0818220:CDS 25.0%
! TATGATTTGATGTAATGCTT+AGG - chr5_3:53810113-53810132 Msa0818220:five_prime_UTR 25.0%
AGTGCTCTAATATAAATGTG+TGG + chr5_3:53805095-53805114 None:intergenic 30.0%
AAAGATTGAACTGGGATTAT+TGG + chr5_3:53805189-53805208 None:intergenic 30.0%
TTTCGGATAAAGATTGAACT+GGG + chr5_3:53805197-53805216 None:intergenic 30.0%
GATTGAATCTATGCAACTTT+CGG + chr5_3:53805214-53805233 None:intergenic 30.0%
!! AACCTCTAAGGTCAATTATT+GGG + chr5_3:53805308-53805327 None:intergenic 30.0%
!! AAACCTCTAAGGTCAATTAT+TGG + chr5_3:53805309-53805328 None:intergenic 30.0%
TAGTACTATGTAAACCTCTA+AGG + chr5_3:53805320-53805339 None:intergenic 30.0%
TAGCTAAATCCATCAAATCA+TGG + chr5_3:53805431-53805450 None:intergenic 30.0%
!! TGATTTGATGGATTTAGCTA+AGG - chr5_3:53805431-53805450 Msa0818220:three_prime_UTR 30.0%
!!! TCAATTTTTTCACTTGCCTA+TGG - chr5_3:53805464-53805483 Msa0818220:three_prime_UTR 30.0%
AACTCACCAAAAACTTATGA+AGG - chr5_3:53805507-53805526 Msa0818220:CDS 30.0%
ACTCACCAAAAACTTATGAA+GGG - chr5_3:53805508-53805527 Msa0818220:CDS 30.0%
TTATCTTCCTTTGTCTTTGA+AGG - chr5_3:53805596-53805615 Msa0818220:CDS 30.0%
ATGGATCATTTCGATATACA+TGG - chr5_3:53805914-53805933 Msa0818220:intron 30.0%
TGGATCATTTCGATATACAT+GGG - chr5_3:53805915-53805934 Msa0818220:intron 30.0%
ACAAGCTACAAAAATAGTAG+AGG + chr5_3:53805960-53805979 None:intergenic 30.0%
!! TTTGTAGCTTGTTCATTAAG+AGG - chr5_3:53805968-53805987 Msa0818220:intron 30.0%
TTGAATTGTGTACATACAAC+GGG - chr5_3:53806076-53806095 Msa0818220:intron 30.0%
! ATCTATTTTGTCAAATAGGG+CGG + chr5_3:53806109-53806128 None:intergenic 30.0%
!! ATGGGACATGTATTTTGAAA+CGG + chr5_3:53806176-53806195 None:intergenic 30.0%
!! CTTGGACATGTATTTTGAAA+CGG - chr5_3:53806397-53806416 Msa0818220:intron 30.0%
ATCTCTCCAAATTGAACAAA+TGG - chr5_3:53806530-53806549 Msa0818220:intron 30.0%
ATCTCTCCATTTGTTCAATT+TGG + chr5_3:53806539-53806558 None:intergenic 30.0%
! TATTCTTTGATTCGATTGTG+AGG + chr5_3:53806776-53806795 None:intergenic 30.0%
! AGAATTCATTGATGGTAAAG+CGG + chr5_3:53806892-53806911 None:intergenic 30.0%
! GTAGAAATTAGGTTTGTTCT+TGG + chr5_3:53806964-53806983 None:intergenic 30.0%
! TCATTGAGTCTTTTGTTAAG+GGG + chr5_3:53807004-53807023 None:intergenic 30.0%
! TCTAGAGTTGAGAAACAATT+GGG + chr5_3:53807048-53807067 None:intergenic 30.0%
!! TTCTAGAGTTGAGAAACAAT+TGG + chr5_3:53807049-53807068 None:intergenic 30.0%
CCTTAGAAAATTAAAGGCTA+AGG + chr5_3:53807095-53807114 None:intergenic 30.0%
!! CCTTAGCCTTTAATTTTCTA+AGG - chr5_3:53807092-53807111 Msa0818220:CDS 30.0%
!! TTTCTAAGGATCTTCTCTTT+TGG - chr5_3:53807106-53807125 Msa0818220:CDS 30.0%
!!! AAAAAGTTGGTGCCTTTTAA+AGG + chr5_3:53807169-53807188 None:intergenic 30.0%
! ATCAAAGGAGGGAATTTTAA+GGG + chr5_3:53807281-53807300 None:intergenic 30.0%
! AATCAAAGGAGGGAATTTTA+AGG + chr5_3:53807282-53807301 None:intergenic 30.0%
ATCTCATGAAAATCAAAGGA+GGG + chr5_3:53807292-53807311 None:intergenic 30.0%
AATCTCATGAAAATCAAAGG+AGG + chr5_3:53807293-53807312 None:intergenic 30.0%
CTTACTCAACAAATTAGTCA+AGG - chr5_3:53807320-53807339 Msa0818220:CDS 30.0%
ACATGAAATTGTTGCATGAT+TGG + chr5_3:53807395-53807414 None:intergenic 30.0%
ATACAAATTTGAATGTAGGG+AGG - chr5_3:53807787-53807806 Msa0818220:intron 30.0%
TGATGAATATGGGATAGAAT+TGG - chr5_3:53807814-53807833 Msa0818220:intron 30.0%
TCTATCTATAAACCTTGGAT+TGG - chr5_3:53807865-53807884 Msa0818220:intron 30.0%
! TTTCTTCAAAATGCTTTTGG+AGG - chr5_3:53807896-53807915 Msa0818220:intron 30.0%
AAGTTCGTAAAGGTGATAAT+TGG - chr5_3:53808056-53808075 Msa0818220:intron 30.0%
ACAATAAATGCATTACGAAC+AGG + chr5_3:53808094-53808113 None:intergenic 30.0%
! CAATATTGGTGATCAAATTC+AGG - chr5_3:53808114-53808133 Msa0818220:intron 30.0%
!!! TATTCGTCAGATTTTTTGGA+TGG - chr5_3:53808280-53808299 Msa0818220:intron 30.0%
TACATAGGATAAGTTGTGAT+TGG + chr5_3:53808685-53808704 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr5_3:53808766-53808785 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr5_3:53808817-53808836 Msa0818220:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr5_3:53808889-53808908 None:intergenic 30.0%
GTGTATGTTTAGTATTACGA+TGG - chr5_3:53809064-53809083 Msa0818220:intron 30.0%
GCGTTTAGAAATTCATAGTT+GGG + chr5_3:53809110-53809129 None:intergenic 30.0%
AGCGTTTAGAAATTCATAGT+TGG + chr5_3:53809111-53809130 None:intergenic 30.0%
! TATCATTGATGATACTTGAG+AGG - chr5_3:53809279-53809298 Msa0818220:intron 30.0%
TTATATGGAAGGCAAAATCT+TGG + chr5_3:53809315-53809334 None:intergenic 30.0%
!!! TCTATTGGAATGTCACTTTT+GGG + chr5_3:53809511-53809530 None:intergenic 30.0%
CTATGACCTTTGATGAATAT+AGG - chr5_3:53809578-53809597 Msa0818220:CDS 30.0%
GAAAAGCCTATATTCATCAA+AGG + chr5_3:53809587-53809606 None:intergenic 30.0%
! ATAGGCTTTTCATTAGAATG+AGG - chr5_3:53809596-53809615 Msa0818220:CDS 30.0%
! TAGGCTTTTCATTAGAATGA+GGG - chr5_3:53809597-53809616 Msa0818220:CDS 30.0%
TTCATTGACACAGAAACAAA+CGG + chr5_3:53809721-53809740 None:intergenic 30.0%
! GAGTTTTACAGAATCATAGT+AGG + chr5_3:53809779-53809798 None:intergenic 30.0%
AAGATTGCATGTGAAATTGA+TGG - chr5_3:53809950-53809969 Msa0818220:CDS 30.0%
CTTTCGGATAAAGATTGAAC+TGG + chr5_3:53805198-53805217 None:intergenic 35.0%
GGGGTTTGATATATCTTTGA+GGG + chr5_3:53805236-53805255 None:intergenic 35.0%
AGGGGTTTGATATATCTTTG+AGG + chr5_3:53805237-53805256 None:intergenic 35.0%
ATCCCAATAATTGACCTTAG+AGG - chr5_3:53805303-53805322 Msa0818220:three_prime_UTR 35.0%
!!! AGGTTGAAGCTTTTTCATGT+GGG + chr5_3:53805344-53805363 None:intergenic 35.0%
!!! AAGGTTGAAGCTTTTTCATG+TGG + chr5_3:53805345-53805364 None:intergenic 35.0%
TGGATTTAGCTAAGGAAACT+TGG - chr5_3:53805439-53805458 Msa0818220:three_prime_UTR 35.0%
! CCATACCCTTCATAAGTTTT+TGG + chr5_3:53805516-53805535 None:intergenic 35.0%
CCAAAAACTTATGAAGGGTA+TGG - chr5_3:53805513-53805532 Msa0818220:CDS 35.0%
!! AGTAGACTTGGTGTTAAGAA+AGG - chr5_3:53805537-53805556 Msa0818220:CDS 35.0%
!! AGAAAGGTGCTATTCTTGAT+TGG - chr5_3:53805553-53805572 Msa0818220:CDS 35.0%
TTGTAGTCCTTCAAAGACAA+AGG + chr5_3:53805606-53805625 None:intergenic 35.0%
! CTTTGAAGGACTACAACAAA+TGG - chr5_3:53805610-53805629 Msa0818220:CDS 35.0%
AAGTACTTAAACCTGCAAGA+GGG + chr5_3:53805648-53805667 None:intergenic 35.0%
TAAGTACTTAAACCTGCAAG+AGG + chr5_3:53805649-53805668 None:intergenic 35.0%
CATCGTCACAAATTCAATGA+CGG - chr5_3:53805739-53805758 Msa0818220:intron 35.0%
ATATACATGGGTGATGTGAT+AGG - chr5_3:53805927-53805946 Msa0818220:intron 35.0%
!! TAGCTTGTTCATTAAGAGGT+AGG - chr5_3:53805972-53805991 Msa0818220:intron 35.0%
TTCATTAAGAGGTAGGTAGT+TGG - chr5_3:53805979-53805998 Msa0818220:intron 35.0%
TAACGGTCAAAATTGTGCAT+TGG - chr5_3:53806356-53806375 Msa0818220:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr5_3:53806401-53806420 Msa0818220:intron 35.0%
TTTCCATAGTAGGTCATTGT+TGG + chr5_3:53806859-53806878 None:intergenic 35.0%
! AGAGATCTCTTTTCCATAGT+AGG + chr5_3:53806869-53806888 None:intergenic 35.0%
TCAATGATTTCACTCAGTCA+AGG - chr5_3:53807017-53807036 Msa0818220:intron 35.0%
GAAAATTAAAGGCTAAGGGT+TGG + chr5_3:53807090-53807109 None:intergenic 35.0%
CACAAAGACTCTCCTTTAAA+AGG - chr5_3:53807154-53807173 Msa0818220:CDS 35.0%
AAACTTCAAGATGTGAATCC+TGG + chr5_3:53807217-53807236 None:intergenic 35.0%
TTCAACAAAAAAACGTGGCA+TGG + chr5_3:53807473-53807492 None:intergenic 35.0%
TCAAACCTTATCACACTTAG+TGG - chr5_3:53807606-53807625 Msa0818220:intron 35.0%
CAAACCTTATCACACTTAGT+GGG - chr5_3:53807607-53807626 Msa0818220:intron 35.0%
TGTGGGTACCATAATACTTA+AGG - chr5_3:53807764-53807783 Msa0818220:intron 35.0%
AATTGGTGAAGTTATGTGAG+AGG - chr5_3:53807831-53807850 Msa0818220:intron 35.0%
GAAAATTCTCTTCCAATCCA+AGG + chr5_3:53807880-53807899 None:intergenic 35.0%
! AAGATATTGGTGCTTGCATA+AGG - chr5_3:53807921-53807940 Msa0818220:intron 35.0%
! AGATATTGGTGCTTGCATAA+GGG - chr5_3:53807922-53807941 Msa0818220:intron 35.0%
TTATCATCACATTCAGATCC+AGG - chr5_3:53807989-53808008 Msa0818220:intron 35.0%
TTACCAGATGATCAAGTACA+TGG - chr5_3:53808028-53808047 Msa0818220:intron 35.0%
TGATGCATGAATCTATCACA+TGG - chr5_3:53808196-53808215 Msa0818220:intron 35.0%
!!! TCAGATTTTTTGGATGGTTG+TGG - chr5_3:53808286-53808305 Msa0818220:intron 35.0%
! TTAGGAAAGTAAAAGCACGA+TGG + chr5_3:53808632-53808651 None:intergenic 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr5_3:53808884-53808903 Msa0818220:intron 35.0%
!! ATCATGCAAAAGCATTGCAA+TGG - chr5_3:53809022-53809041 Msa0818220:intron 35.0%
AACACCTAAGAATTGCATCT+AGG - chr5_3:53809243-53809262 Msa0818220:intron 35.0%
ACACCTAAGAATTGCATCTA+GGG - chr5_3:53809244-53809263 Msa0818220:intron 35.0%
TTCTAAGCAATGCAATCTAC+AGG - chr5_3:53809419-53809438 Msa0818220:intron 35.0%
!!! CTCTATTGGAATGTCACTTT+TGG + chr5_3:53809512-53809531 None:intergenic 35.0%
!!! AATTGTTTTGCTGGCTCTAT+TGG + chr5_3:53809526-53809545 None:intergenic 35.0%
AATAGAGCCAGCAAAACAAT+TGG - chr5_3:53809525-53809544 Msa0818220:CDS 35.0%
ATTCATCAAAGGTCATAGCA+GGG + chr5_3:53809576-53809595 None:intergenic 35.0%
TATTCATCAAAGGTCATAGC+AGG + chr5_3:53809577-53809596 None:intergenic 35.0%
! AGGCTTTTCATTAGAATGAG+GGG - chr5_3:53809598-53809617 Msa0818220:CDS 35.0%
! TCTACTTGAGATTTTCCACA+TGG + chr5_3:53809625-53809644 None:intergenic 35.0%
TCCAAACATGCATATCATCT+CGG + chr5_3:53809661-53809680 None:intergenic 35.0%
CGGCTTGTGATTAAATGTTA+AGG + chr5_3:53809810-53809829 None:intergenic 35.0%
CTAGAAGGAGGTTATATACA+CGG + chr5_3:53809830-53809849 None:intergenic 35.0%
AATATCAACTAGCTAGAAGG+AGG + chr5_3:53809842-53809861 None:intergenic 35.0%
ATCAATTAAGCCAGAAAGTG+AGG - chr5_3:53809922-53809941 Msa0818220:CDS 35.0%
TCAATTAAGCCAGAAAGTGA+GGG - chr5_3:53809923-53809942 Msa0818220:CDS 35.0%
! CTCTTCCTGATTGGTAATTT+GGG - chr5_3:53809987-53810006 Msa0818220:CDS 35.0%
GTTAGGGAAAGAGAAAAGGA+GGG + chr5_3:53805012-53805031 None:intergenic 40.0%
AGTTAGGGAAAGAGAAAAGG+AGG + chr5_3:53805013-53805032 None:intergenic 40.0%
GTGAGTTAGGGAAAGAGAAA+AGG + chr5_3:53805016-53805035 None:intergenic 40.0%
AAATGATCAGCCCACAAGAT+TGG - chr5_3:53805157-53805176 Msa0818220:three_prime_UTR 40.0%
!! TGAACTGGGATTATTGGTTC+AGG + chr5_3:53805183-53805202 None:intergenic 40.0%
! TATTGATGGACGGTCACTAA+GGG + chr5_3:53805256-53805275 None:intergenic 40.0%
! TTATTGATGGACGGTCACTA+AGG + chr5_3:53805257-53805276 None:intergenic 40.0%
AACCTTCAAGCAAATCTCTG+AGG - chr5_3:53805359-53805378 Msa0818220:three_prime_UTR 40.0%
TCAAATCATGGCTAACACCA+TGG + chr5_3:53805419-53805438 None:intergenic 40.0%
! TGGTGTTAGCCATGATTTGA+TGG - chr5_3:53805419-53805438 Msa0818220:three_prime_UTR 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr5_3:53806400-53806419 None:intergenic 40.0%
CATATGTGAAGTGGTTGACT+TGG - chr5_3:53806379-53806398 Msa0818220:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr5_3:53806400-53806419 Msa0818220:intron 40.0%
AGGGGAAGAGATTGAGAAAT+AGG + chr5_3:53806986-53807005 None:intergenic 40.0%
!!! CTAAGGGTTGGTTCTCTTTT+GGG + chr5_3:53807078-53807097 None:intergenic 40.0%
ACAAAAGGTTGAGGGTCTTT+GGG + chr5_3:53807249-53807268 None:intergenic 40.0%
TACAAAAGGTTGAGGGTCTT+TGG + chr5_3:53807250-53807269 None:intergenic 40.0%
TGCATGATTGGAACAAATCG+TGG + chr5_3:53807383-53807402 None:intergenic 40.0%
ACAAAAAAACGTGGCATGGA+GGG + chr5_3:53807469-53807488 None:intergenic 40.0%
AACAAAAAAACGTGGCATGG+AGG + chr5_3:53807470-53807489 None:intergenic 40.0%
! GAGAAATCGTGGCATGATTT+TGG + chr5_3:53807514-53807533 None:intergenic 40.0%
!! AGGGAGGTGTTTGATGAATA+TGG - chr5_3:53807803-53807822 Msa0818220:intron 40.0%
!! GGGAGGTGTTTGATGAATAT+GGG - chr5_3:53807804-53807823 Msa0818220:intron 40.0%
!! GCTTTTGGAGGTGAAGATAT+TGG - chr5_3:53807908-53807927 Msa0818220:intron 40.0%
GATAAACCAAGAGTCAACTC+TGG + chr5_3:53807974-53807993 None:intergenic 40.0%
AACAAAAGAGTAATGCCACC+TGG + chr5_3:53808010-53808029 None:intergenic 40.0%
AGACCATGTACTTGATCATC+TGG + chr5_3:53808034-53808053 None:intergenic 40.0%
! CATGGTCTTCAAGTTCGTAA+AGG - chr5_3:53808046-53808065 Msa0818220:intron 40.0%
TGCATGAATCTATCACATGG+AGG - chr5_3:53808199-53808218 Msa0818220:intron 40.0%
TCTTAACCCTGTAGCAATGT+GGG + chr5_3:53808556-53808575 None:intergenic 40.0%
TTCTTAACCCTGTAGCAATG+TGG + chr5_3:53808557-53808576 None:intergenic 40.0%
ACATTGCTACAGGGTTAAGA+AGG - chr5_3:53808556-53808575 Msa0818220:intron 40.0%
CTACAGGGTTAAGAAGGATA+GGG - chr5_3:53808562-53808581 Msa0818220:intron 40.0%
GGATAAGTTGTGATTGGTAG+AGG + chr5_3:53808679-53808698 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+CGG - chr5_3:53808827-53808846 Msa0818220:intron 40.0%
CATGTGAGTATGAGAGAGAA+AGG - chr5_3:53808860-53808879 Msa0818220:intron 40.0%
CTACCCTAGATGCAATTCTT+AGG + chr5_3:53809250-53809269 None:intergenic 40.0%
GGGATTGTAGAAGAAAGCTA+AGG + chr5_3:53809491-53809510 None:intergenic 40.0%
!! GGCTTTACCAATTGTTTTGC+TGG + chr5_3:53809535-53809554 None:intergenic 40.0%
AAAGGTCATAGCAGGGTATA+GGG + chr5_3:53809569-53809588 None:intergenic 40.0%
TCCGAGATGATATGCATGTT+TGG - chr5_3:53809657-53809676 Msa0818220:CDS 40.0%
ATCTTTGTACCCTCACTTTC+TGG + chr5_3:53809935-53809954 None:intergenic 40.0%
CCAAATTACCAATCAGGAAG+AGG + chr5_3:53809989-53810008 None:intergenic 40.0%
! CCTCTTCCTGATTGGTAATT+TGG - chr5_3:53809986-53810005 Msa0818220:CDS 40.0%
GACTACCCAAATTACCAATC+AGG + chr5_3:53809995-53810014 None:intergenic 40.0%
CCATATTACAAACATTGCCC+TGG + chr5_3:53810062-53810081 None:intergenic 40.0%
CCAGGGCAATGTTTGTAATA+TGG - chr5_3:53810059-53810078 Msa0818220:five_prime_UTR 40.0%
TTGGTTCAGGCCAATCTTGT+GGG + chr5_3:53805170-53805189 None:intergenic 45.0%
! ATTGGTTCAGGCCAATCTTG+TGG + chr5_3:53805171-53805190 None:intergenic 45.0%
! ATTGATGGACGGTCACTAAG+GGG + chr5_3:53805255-53805274 None:intergenic 45.0%
! AGCCTCAGAGATTTGCTTGA+AGG + chr5_3:53805364-53805383 None:intergenic 45.0%
!! TCTCTGAGGCTTGTAAAGAG+TGG - chr5_3:53805373-53805392 Msa0818220:three_prime_UTR 45.0%
!! CTCTGAGGCTTGTAAAGAGT+GGG - chr5_3:53805374-53805393 Msa0818220:three_prime_UTR 45.0%
! TCTGAGGCTTGTAAAGAGTG+GGG - chr5_3:53805375-53805394 Msa0818220:three_prime_UTR 45.0%
! GAAGGGTATGGTAGTAGACT+TGG - chr5_3:53805525-53805544 Msa0818220:CDS 45.0%
TACTTAAACCTGCAAGAGGG+AGG + chr5_3:53805645-53805664 None:intergenic 45.0%
! GTGCATTGGCATATGTGAAG+TGG - chr5_3:53806370-53806389 Msa0818220:intron 45.0%
!!! GCTAAGGGTTGGTTCTCTTT+TGG + chr5_3:53807079-53807098 None:intergenic 45.0%
AGGGACTCTTGGGAAAAAGT+TGG + chr5_3:53807182-53807201 None:intergenic 45.0%
! TTCCCAAGAGTCCCTTCTTT+TGG - chr5_3:53807187-53807206 Msa0818220:CDS 45.0%
AGCCAAAAGAAGGGACTCTT+GGG + chr5_3:53807192-53807211 None:intergenic 45.0%
ATCCTGGAGAGCCAAAAGAA+GGG + chr5_3:53807201-53807220 None:intergenic 45.0%
AATCCTGGAGAGCCAAAAGA+AGG + chr5_3:53807202-53807221 None:intergenic 45.0%
AAATCGTGGCACGATTTGAC+AGG + chr5_3:53807369-53807388 None:intergenic 45.0%
AGCAAAAACGTGGCACGATT+TGG + chr5_3:53807536-53807555 None:intergenic 45.0%
CCAACCCACTAAGTGTGATA+AGG + chr5_3:53807614-53807633 None:intergenic 45.0%
! CCTTATCACACTTAGTGGGT+TGG - chr5_3:53807611-53807630 Msa0818220:intron 45.0%
AACTCTGGCTGTGGACATTT+GGG + chr5_3:53807959-53807978 None:intergenic 45.0%
TCATCACATTCAGATCCAGG+TGG - chr5_3:53807992-53808011 Msa0818220:intron 45.0%
ATCAGCATGCACACACAAAG+TGG - chr5_3:53808519-53808538 Msa0818220:intron 45.0%
CATTTGCCCACATTGCTACA+GGG - chr5_3:53808547-53808566 Msa0818220:intron 45.0%
GCTACAGGGTTAAGAAGGAT+AGG - chr5_3:53808561-53808580 Msa0818220:intron 45.0%
CAAAGGTCATAGCAGGGTAT+AGG + chr5_3:53809570-53809589 None:intergenic 45.0%
ATTAGAATGAGGGGTCCATG+TGG - chr5_3:53809607-53809626 Msa0818220:CDS 45.0%
GATGTTTGCCTCTTCCTGAT+TGG - chr5_3:53809978-53809997 Msa0818220:CDS 45.0%
! CAATCATCGGTTGAGAAGTG+GGG + chr5_3:53810017-53810036 None:intergenic 45.0%
! CCAATCATCGGTTGAGAAGT+GGG + chr5_3:53810018-53810037 None:intergenic 45.0%
CCACTTCTCAACCGATGATT+GGG - chr5_3:53810016-53810035 Msa0818220:five_prime_UTR 45.0%
CACTTCTCAACCGATGATTG+GGG - chr5_3:53810017-53810036 Msa0818220:five_prime_UTR 45.0%
ATGCATGCACCATGATTCCA+GGG - chr5_3:53810042-53810061 Msa0818220:five_prime_UTR 45.0%
CAAACATTGCCCTGGAATCA+TGG + chr5_3:53810054-53810073 None:intergenic 45.0%
!!! ATGAATTTATTATTATTTTT+TGG - chr5_3:53805871-53805890 Msa0818220:intron 5.0%
GGAAAGAGAAAAGGAGGGTG+AGG + chr5_3:53805007-53805026 None:intergenic 50.0%
GTTGGTGTGCGTGTGAGTTA+GGG + chr5_3:53805028-53805047 None:intergenic 50.0%
! AGTTGGTGTGCGTGTGAGTT+AGG + chr5_3:53805029-53805048 None:intergenic 50.0%
GGGCCAACAATGACCTACTA+TGG - chr5_3:53806853-53806872 Msa0818220:intron 50.0%
!! GGTTGGTTCTCTTTTGGGAG+TGG + chr5_3:53807073-53807092 None:intergenic 50.0%
GAGCCAAAAGAAGGGACTCT+TGG + chr5_3:53807193-53807212 None:intergenic 50.0%
! GGCACGATTTGGAGAAATCG+TGG + chr5_3:53807525-53807544 None:intergenic 50.0%
CAACTCTGGCTGTGGACATT+TGG + chr5_3:53807960-53807979 None:intergenic 50.0%
GAGGCGACACATGATGAAGT+TGG - chr5_3:53808218-53808237 Msa0818220:intron 50.0%
GCATTTGCCCACATTGCTAC+AGG - chr5_3:53808546-53808565 Msa0818220:intron 50.0%
GGGTATAGGGCAGGTTTATC+TGG + chr5_3:53809556-53809575 None:intergenic 50.0%
CCCACTTCTCAACCGATGAT+TGG - chr5_3:53810015-53810034 Msa0818220:five_prime_UTR 50.0%
! CCCAATCATCGGTTGAGAAG+TGG + chr5_3:53810019-53810038 None:intergenic 50.0%
GCATGCATCACCCCAATCAT+CGG + chr5_3:53810030-53810049 None:intergenic 50.0%
GATGCATGCACCATGATTCC+AGG - chr5_3:53810041-53810060 Msa0818220:five_prime_UTR 50.0%
GGAGGGTGAGGTGAGTTTGT+AGG + chr5_3:53804995-53805014 None:intergenic 55.0%
!!! GTCCCTTCTTTTGGCTCTCC+AGG - chr5_3:53807196-53807215 Msa0818220:CDS 55.0%
CCAAGAGTCAACTCTGGCTG+TGG + chr5_3:53807968-53807987 None:intergenic 55.0%
! CCACAGCCAGAGTTGACTCT+TGG - chr5_3:53807965-53807984 Msa0818220:intron 55.0%
GTCATAGCAGGGTATAGGGC+AGG + chr5_3:53809565-53809584 None:intergenic 55.0%
CTGCAAGAGGGAGGCAGAGA+AGG + chr5_3:53805636-53805655 None:intergenic 60.0%
CTTCTCTGCCTCCCTCTTGC+AGG - chr5_3:53805634-53805653 Msa0818220:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 53804989 53810178 53804989 ID=Msa0818220;Name=Msa0818220
chr5_3 mRNA 53804989 53810178 53804989 ID=Msa0818220-mRNA-1;Parent=Msa0818220;Name=Msa0818220-mRNA-1;_AED=0.15;_eAED=0.15;_QI=170|1|1|1|1|1|3|512|358
chr5_3 exon 53804989 53805749 53804989 ID=Msa0818220-mRNA-1:exon:16283;Parent=Msa0818220-mRNA-1
chr5_3 exon 53807032 53807362 53807032 ID=Msa0818220-mRNA-1:exon:16282;Parent=Msa0818220-mRNA-1
chr5_3 exon 53809512 53810178 53809512 ID=Msa0818220-mRNA-1:exon:16281;Parent=Msa0818220-mRNA-1
chr5_3 five_prime_UTR 53810009 53810178 53810009 ID=Msa0818220-mRNA-1:five_prime_utr;Parent=Msa0818220-mRNA-1
chr5_3 CDS 53809512 53810008 53809512 ID=Msa0818220-mRNA-1:cds;Parent=Msa0818220-mRNA-1
chr5_3 CDS 53807032 53807362 53807032 ID=Msa0818220-mRNA-1:cds;Parent=Msa0818220-mRNA-1
chr5_3 CDS 53805501 53805749 53805501 ID=Msa0818220-mRNA-1:cds;Parent=Msa0818220-mRNA-1
chr5_3 three_prime_UTR 53804989 53805500 53804989 ID=Msa0818220-mRNA-1:three_prime_utr;Parent=Msa0818220-mRNA-1
Gene Sequence

>Msa0818220

ATGATCAGCCCACAAGATTGGCCTGAACCAATAATCCCAGTTCAATCTTTATCCGAAAGTTGCATAGATTCAATCCCTCAAAGATATATCAAACCCCTTAGTGACCGTCCATCAATAAACTCTATTTTAGAAACAACCAATAATATCCCAATAATTGACCTTAGAGGTTTACATAGTACTAACCCACATGAAAAAGCTTCAACCTTCAAGCAAATCTCTGAGGCTTGTAAAGAGTGGGGATTCTTTCAAATTGTTAACCATGGTGTTAGCCATGATTTGATGGATTTAGCTAAGGAAACTTGGCGTCAATTTTTTCACTTGCCTATGGAAGTGAAACAATTATATGCAAACTCACCAAAAACTTATGAAGGGTATGGTAGTAGACTTGGTGTTAAGAAAGGTGCTATTCTTGATTGGAGTGATTACTACTATCTTCATTATCTTCCTTTGTCTTTGAAGGACTACAACAAATGGCCTTCTCTGCCTCCCTCTTGCAGGGAGGTGTTTGATGAATATGGGATAGAATTGGTGAAGTTATGTGAGAGGTTGATGAAAGTTCTATCTATAAACCTTGGATTGGAAGAGAATTTTCTTCAAAATGCTTTTGGAGGTGAAGATATTGGTGCTTGCATAAGGGTGAATTATTTTCCCAAATGTCCACAGCCAGAGTTGACTCTTGGTTTATCATCACATTCAGATCCAGGTGGCATTACTCTTTTGTTACCAGATGATCAAGTACATGGTCTTCAAGTTCGTAAAGGTGATAATTGGATTACGGTGAAACCTGTTCGTAATGCATTTATTGTCAATATTGGTGATCAAATTCAGGTTCTAAGCAATGCAATCTACAGGAGTGTAGAGCATAGAGTACTAGCAAACTCACACAAAGAAAGAGTTTCCTTAGCTTTCTTCTACAATCCCAAAAGTGACATTCCAATAGAGCCAGCAAAACAATTGGTAAAGCCAGATAAACCTGCCCTATACCCTGCTATGACCTTTGATGAATATAGGCTTTTCATTAGAATGAGGGGTCCATGTGGAAAATCTCAAGTAGAATCTTTAAAATCTCCGAGATGA
Protein sequence

>Msa0818220

MISPQDWPEPIIPVQSLSESCIDSIPQRYIKPLSDRPSINSILETTNNIPIIDLRGLHSTNPHEKASTFKQISEACKEWGFFQIVNHGVSHDLMDLAKETWRQFFHLPMEVKQLYANSPKTYEGYGSRLGVKKGAILDWSDYYYLHYLPLSLKDYNKWPSLPPSCREVFDEYGIELVKLCERLMKVLSINLGLEENFLQNAFGGEDIGACIRVNYFPKCPQPELTLGLSSHSDPGGITLLLPDDQVHGLQVRKGDNWITVKPVRNAFIVNIGDQIQVLSNAIYRSVEHRVLANSHKERVSLAFFYNPKSDIPIEPAKQLVKPDKPALYPAMTFDEYRLFIRMRGPCGKSQVESLKSPR*