AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0858570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858570 MtrunA17_Chr5g0437181 97.765 358 8 0 1 358 1 358 0.0 726
Msa0858570 MtrunA17_Chr3g0113641 76.404 356 84 0 3 358 4 359 0.0 573
Msa0858570 MtrunA17_Chr4g0006371 66.129 372 112 3 1 358 1 372 0.0 519
Msa0858570 MtrunA17_Chr7g0242551 66.575 362 114 3 1 356 2 362 0.0 508
Msa0858570 MtrunA17_Chr8g0375601 37.356 348 213 3 10 355 7 351 7.58e-83 256
Msa0858570 MtrunA17_Chr5g0423191 36.257 342 211 3 14 355 13 347 1.27e-80 250
Msa0858570 MtrunA17_Chr8g0375671 37.429 350 207 6 11 355 14 356 3.55e-80 249
Msa0858570 MtrunA17_Chr5g0420951 36.257 342 213 2 14 355 18 354 5.05e-80 248
Msa0858570 MtrunA17_Chr8g0345831 41.124 338 189 6 20 355 13 342 4.96e-79 245
Msa0858570 MtrunA17_Chr5g0423251 35.965 342 212 3 14 355 13 347 7.44e-79 245
Msa0858570 MtrunA17_Chr8g0365241 36.842 323 198 3 14 336 23 339 9.33e-79 245
Msa0858570 MtrunA17_Chr3g0109041 39.489 352 195 9 12 354 8 350 3.16e-78 244
Msa0858570 MtrunA17_Chr3g0128001 41.534 313 172 5 25 336 15 317 4.95e-77 240
Msa0858570 MtrunA17_Chr7g0239111 37.309 327 199 2 10 336 16 336 6.25e-77 241
Msa0858570 MtrunA17_Chr2g0314401 38.841 345 200 4 14 355 17 353 7.38e-77 240
Msa0858570 MtrunA17_Chr2g0314391 37.681 345 204 4 14 355 36 372 1.31e-76 240
Msa0858570 MtrunA17_Chr5g0421041 35.380 342 212 4 14 355 13 345 1.40e-76 239
Msa0858570 MtrunA17_Chr5g0421091 38.226 327 188 5 14 336 11 327 1.43e-76 239
Msa0858570 MtrunA17_Chr2g0296371 37.037 324 199 4 14 336 17 336 1.63e-76 239
Msa0858570 MtrunA17_Chr5g0420981 35.604 323 203 2 14 336 18 335 7.26e-76 238
Msa0858570 MtrunA17_Chr5g0420941 38.080 323 193 3 14 336 11 326 2.55e-75 236
Msa0858570 MtrunA17_Chr2g0314381 37.609 343 208 4 14 355 42 379 2.58e-75 237
Msa0858570 MtrunA17_Chr7g0239101 34.971 346 219 2 10 355 16 355 8.47e-75 235
Msa0858570 MtrunA17_Chr8g0375571 38.558 319 185 5 14 328 11 322 7.30e-74 233
Msa0858570 MtrunA17_Chr1g0162191 37.460 315 193 2 22 336 20 330 2.12e-73 231
Msa0858570 MtrunA17_Chr5g0423221 36.047 344 210 4 14 355 37 372 3.51e-73 231
Msa0858570 MtrunA17_Chr5g0421011 34.795 342 216 3 14 355 13 347 4.16e-73 231
Msa0858570 MtrunA17_Chr7g0239121 35.465 344 215 3 10 352 12 349 4.48e-73 231
Msa0858570 MtrunA17_Chr7g0239821 34.957 349 218 3 10 355 22 364 1.81e-72 229
Msa0858570 MtrunA17_Chr5g0398291 37.462 331 198 5 14 336 8 337 3.29e-72 228
Msa0858570 MtrunA17_Chr5g0421101 35.673 342 213 3 14 355 13 347 1.16e-71 227
Msa0858570 MtrunA17_Chr3g0114861 37.730 326 192 4 14 337 6 322 1.29e-71 226
Msa0858570 MtrunA17_Chr8g0375701 37.237 333 200 5 24 355 30 354 1.66e-70 224
Msa0858570 MtrunA17_Chr5g0423201 35.817 349 211 6 11 355 9 348 7.17e-70 222
Msa0858570 MtrunA17_Chr5g0423211 36.196 326 197 5 14 336 13 330 1.88e-69 221
Msa0858570 MtrunA17_Chr5g0420901 35.277 343 213 5 14 355 12 346 6.61e-69 220
Msa0858570 MtrunA17_Chr5g0439011 37.700 313 180 6 48 355 4 306 1.29e-67 215
Msa0858570 MtrunA17_Chr3g0121141 36.656 311 184 6 47 355 2 301 2.55e-67 214
Msa0858570 MtrunA17_Chr6g0455481 39.450 327 180 6 24 345 18 331 4.22e-66 212
Msa0858570 MtrunA17_Chr2g0289341 36.129 310 185 6 48 354 3 302 4.45e-65 209
Msa0858570 MtrunA17_Chr3g0125201 37.755 294 167 4 49 336 3 286 3.35e-64 206
Msa0858570 MtrunA17_Chr8g0371931 36.556 331 200 8 11 337 1 325 9.51e-64 207
Msa0858570 MtrunA17_Chr5g0424201 34.441 331 205 5 11 336 3 326 1.76e-63 205
Msa0858570 MtrunA17_Chr8g0371921 36.858 331 199 8 11 337 1 325 1.71e-62 204
Msa0858570 MtrunA17_Chr4g0045411 37.941 340 190 10 29 355 12 343 1.71e-62 203
Msa0858570 MtrunA17_Chr7g0239071 37.818 275 167 2 82 355 29 300 2.44e-62 201
Msa0858570 MtrunA17_Chr5g0405411 36.697 327 196 8 14 337 7 325 3.57e-62 202
Msa0858570 MtrunA17_Chr8g0375681 37.500 272 168 2 84 355 15 284 3.81e-62 200
Msa0858570 MtrunA17_Chr3g0087031 35.821 335 198 8 14 341 24 348 4.90e-62 202
Msa0858570 MtrunA17_Chr5g0426891 34.545 330 204 7 11 336 1 322 2.61e-61 200
Msa0858570 MtrunA17_Chr8g0370711 34.824 313 197 5 44 355 47 353 6.38e-61 199
Msa0858570 MtrunA17_Chr3g0145171 36.879 282 173 3 48 328 51 328 1.39e-60 198
Msa0858570 MtrunA17_Chr1g0179801 34.734 357 207 9 14 355 27 372 1.14e-59 197
Msa0858570 MtrunA17_Chr7g0232161 35.764 288 178 3 3 289 13 294 3.03e-59 194
Msa0858570 MtrunA17_Chr7g0250511 35.976 328 199 7 16 340 16 335 3.38e-59 194
Msa0858570 MtrunA17_Chr7g0220001 35.976 328 189 8 24 345 17 329 5.81e-59 194
Msa0858570 MtrunA17_Chr5g0424211 34.069 317 197 5 14 325 6 315 1.15e-58 193
Msa0858570 MtrunA17_Chr3g0102041 36.190 315 193 6 23 335 14 322 1.35e-58 193
Msa0858570 MtrunA17_Chr1g0184161 34.375 320 199 7 20 337 10 320 5.34e-58 191
Msa0858570 MtrunA17_Chr4g0064781 36.429 280 171 2 49 328 50 322 5.72e-58 191
Msa0858570 MtrunA17_Chr1g0184151 35.110 319 196 7 20 336 10 319 8.28e-58 191
Msa0858570 MtrunA17_Chr2g0311921 33.815 346 218 5 14 355 19 357 1.38e-57 191
Msa0858570 MtrunA17_Chr1g0184101 35.802 324 195 8 20 341 9 321 2.86e-57 189
Msa0858570 MtrunA17_Chr1g0162351 34.659 352 202 10 24 355 46 389 4.44e-57 190
Msa0858570 MtrunA17_Chr7g0266651 36.188 362 205 9 5 355 15 361 4.77e-57 189
Msa0858570 MtrunA17_Chr8g0336751 35.882 340 206 6 14 349 59 390 1.66e-56 189
Msa0858570 MtrunA17_Chr1g0162321 34.659 352 202 10 24 355 46 389 2.14e-56 189
Msa0858570 MtrunA17_Chr7g0220011 33.742 326 199 7 24 345 15 327 4.27e-56 186
Msa0858570 MtrunA17_Chr8g0370721 35.315 286 180 3 44 328 47 328 4.90e-56 186
Msa0858570 MtrunA17_Chr3g0126741 33.735 332 210 6 11 339 20 344 5.66e-56 187
Msa0858570 MtrunA17_Chr4g0045441 35.942 345 195 12 29 355 8 344 5.85e-56 186
Msa0858570 MtrunA17_Chr3g0114871 37.091 275 164 4 14 286 7 274 6.77e-56 184
Msa0858570 MtrunA17_Chr7g0265221 33.048 351 210 9 25 357 38 381 1.42e-55 186
Msa0858570 MtrunA17_Chr5g0420721 35.887 248 157 1 108 355 4 249 1.42e-55 182
Msa0858570 MtrunA17_Chr8g0336851 32.948 346 218 6 14 355 28 363 1.56e-55 186
Msa0858570 MtrunA17_Chr1g0184121 34.688 320 199 7 18 335 7 318 1.95e-55 184
Msa0858570 MtrunA17_Chr1g0162361 33.994 353 191 11 25 355 4 336 7.69e-55 183
Msa0858570 MtrunA17_Chr7g0235951 33.429 350 215 8 14 355 33 372 7.73e-55 184
Msa0858570 MtrunA17_Chr2g0311761 32.659 346 222 5 14 355 33 371 1.71e-54 183
Msa0858570 MtrunA17_Chr8g0336781 32.394 355 227 6 5 355 54 399 2.18e-54 183
Msa0858570 MtrunA17_Chr2g0311831 33.815 346 217 6 14 355 33 370 3.39e-54 182
Msa0858570 MtrunA17_Chr8g0348081 34.603 315 195 5 45 355 56 363 4.55e-54 182
Msa0858570 MtrunA17_Chr1g0184111 34.472 322 199 8 18 336 7 319 4.55e-54 181
Msa0858570 MtrunA17_Chr4g0045451 36.025 322 176 12 29 329 8 320 9.17e-54 181
Msa0858570 MtrunA17_Chr5g0412671 35.780 327 199 6 15 336 5 325 9.82e-54 180
Msa0858570 MtrunA17_Chr2g0311691 33.333 360 222 9 5 355 18 368 4.09e-53 179
Msa0858570 MtrunA17_Chr4g0066121 34.835 333 198 10 14 339 28 348 5.21e-53 179
Msa0858570 MtrunA17_Chr2g0314371 35.463 313 170 7 14 303 17 320 5.95e-53 178
Msa0858570 MtrunA17_Chr3g0145181 33.010 309 197 5 44 348 44 346 6.26e-53 178
Msa0858570 MtrunA17_Chr8g0336631 32.378 349 217 8 14 355 28 364 6.28e-53 179
Msa0858570 MtrunA17_Chr1g0204181 35.016 317 193 6 24 333 37 347 8.42e-53 179
Msa0858570 MtrunA17_Chr5g0412651 35.385 325 203 7 15 336 5 325 9.05e-53 178
Msa0858570 MtrunA17_Chr4g0050031 33.711 353 221 6 10 355 19 365 1.12e-52 178
Msa0858570 MtrunA17_Chr5g0412681 36.513 304 178 7 36 336 21 312 1.94e-52 177
Msa0858570 MtrunA17_Chr6g0474391 34.472 322 188 7 24 333 42 352 2.34e-52 177
Msa0858570 MtrunA17_Chr8g0336861 32.471 348 219 8 14 355 28 365 2.78e-52 177
Msa0858570 MtrunA17_Chr6g0472861 34.262 359 197 11 14 351 28 368 4.19e-52 177
Msa0858570 MtrunA17_Chr4g0045471 32.955 352 211 11 22 355 1 345 5.16e-52 176
Msa0858570 MtrunA17_Chr4g0045431 33.043 345 205 11 29 355 8 344 1.58e-51 174
Msa0858570 MtrunA17_Chr6g0488511 36.559 279 160 7 49 322 3 269 3.44e-51 172
Msa0858570 MtrunA17_Chr1g0161041 35.503 338 199 9 5 336 51 375 4.00e-51 175
Msa0858570 MtrunA17_Chr2g0311681 31.880 367 218 11 5 355 18 368 4.05e-51 174
Msa0858570 MtrunA17_Chr8g0336761 31.609 348 220 8 14 355 28 363 4.25e-51 174
Msa0858570 MtrunA17_Chr1g0161081 36.858 331 186 9 14 336 37 352 5.26e-51 174
Msa0858570 MtrunA17_Chr2g0311701 31.593 364 223 11 5 355 24 374 5.33e-51 174
Msa0858570 MtrunA17_Chr7g0239091 31.988 347 219 5 10 355 120 450 1.59e-50 175
Msa0858570 MtrunA17_Chr8g0364471 31.111 360 228 8 2 352 21 369 2.96e-50 172
Msa0858570 MtrunA17_Chr1g0184241 31.487 343 220 6 5 344 25 355 1.19e-49 170
Msa0858570 MtrunA17_Chr1g0191201 34.539 304 179 6 50 341 54 349 1.56e-49 170
Msa0858570 MtrunA17_Chr3g0093761 32.857 350 212 10 14 355 18 352 7.97e-49 167
Msa0858570 MtrunA17_Chr3g0145201 32.581 310 199 5 43 348 678 981 1.05e-48 176
Msa0858570 MtrunA17_Chr3g0093751 32.764 351 212 11 14 355 18 353 2.16e-48 166
Msa0858570 MtrunA17_Chr2g0311861 32.464 345 203 8 14 355 29 346 4.20e-48 166
Msa0858570 MtrunA17_Chr2g0311631 33.033 333 200 9 14 336 22 341 2.61e-47 164
Msa0858570 MtrunA17_Chr3g0093741 31.322 348 221 8 14 355 18 353 4.42e-47 163
Msa0858570 MtrunA17_Chr7g0225881 32.865 356 203 11 14 351 28 365 4.79e-47 163
Msa0858570 MtrunA17_Chr4g0045461 36.508 315 180 9 29 328 8 317 5.09e-47 163
Msa0858570 MtrunA17_Chr1g0161111 34.347 329 197 9 14 336 96 411 9.82e-47 164
Msa0858570 MtrunA17_Chr8g0351101 30.909 330 192 6 22 333 30 341 1.08e-46 162
Msa0858570 MtrunA17_Chr2g0332191 32.209 326 193 7 22 336 25 333 1.74e-46 162
Msa0858570 MtrunA17_Chr2g0311741 33.226 310 196 7 48 355 26 326 2.93e-46 160
Msa0858570 MtrunA17_Chr1g0187831 30.919 359 230 9 7 355 23 373 4.59e-46 161
Msa0858570 MtrunA17_Chr7g0265351 33.846 325 180 10 44 355 34 336 1.86e-45 158
Msa0858570 MtrunA17_Chr8g0384461 29.360 344 218 8 11 343 14 343 5.03e-45 158
Msa0858570 MtrunA17_Chr3g0125421 33.333 339 203 8 15 341 5 332 1.06e-44 157
Msa0858570 MtrunA17_Chr2g0319491 33.333 291 175 7 49 337 33 306 1.40e-44 155
Msa0858570 MtrunA17_Chr8g0335411 32.670 352 219 9 12 355 31 372 2.01e-44 157
Msa0858570 MtrunA17_Chr1g0167911 33.234 334 209 8 7 336 13 336 2.16e-44 156
Msa0858570 MtrunA17_Chr1g0187811 29.714 350 226 9 18 355 151 492 6.80e-44 158
Msa0858570 MtrunA17_Chr1g0187821 30.372 349 228 8 14 355 29 369 1.32e-43 154
Msa0858570 MtrunA17_Chr2g0311711 30.792 341 216 9 5 336 22 351 3.61e-43 153
Msa0858570 MtrunA17_Chr4g0066991 30.372 349 207 8 14 355 33 352 9.49e-43 152
Msa0858570 MtrunA17_Chr3g0130391 31.230 317 205 5 24 333 44 354 1.26e-42 152
Msa0858570 MtrunA17_Chr1g0167961 31.714 350 224 8 5 349 26 365 2.83e-42 151
Msa0858570 MtrunA17_Chr7g0247991 32.861 353 217 10 12 355 31 372 3.38e-42 150
Msa0858570 MtrunA17_Chr8g0354261 30.000 350 228 8 14 355 33 373 3.88e-42 150
Msa0858570 MtrunA17_Chr8g0354241 28.736 348 235 6 14 355 33 373 7.87e-42 150
Msa0858570 MtrunA17_Chr7g0236011 32.194 351 218 10 14 355 33 372 1.04e-41 149
Msa0858570 MtrunA17_Chr3g0105281 33.333 309 164 9 40 337 25 302 1.32e-41 148
Msa0858570 MtrunA17_Chr1g0167951 30.791 354 228 8 7 355 13 354 3.82e-41 147
Msa0858570 MtrunA17_Chr2g0285931 31.988 322 186 13 36 337 6 314 7.93e-41 146
Msa0858570 MtrunA17_Chr4g0055591 28.809 361 231 8 5 355 16 360 3.31e-39 142
Msa0858570 MtrunA17_Chr8g0358941 30.650 323 189 11 33 337 9 314 4.21e-39 142
Msa0858570 MtrunA17_Chr3g0092531 33.221 298 188 8 49 344 6 294 5.22e-38 138
Msa0858570 MtrunA17_Chr8g0384481 28.931 318 211 7 49 358 59 369 2.81e-37 137
Msa0858570 MtrunA17_Chr4g0011311 31.970 269 169 7 12 277 31 288 2.86e-37 136
Msa0858570 MtrunA17_Chr4g0053251 30.690 290 174 7 47 315 6 289 8.03e-36 132
Msa0858570 MtrunA17_Chr4g0075471 47.244 127 65 1 212 336 28 154 9.85e-35 125
Msa0858570 MtrunA17_Chr4g0055911 33.115 305 181 10 45 336 5 299 1.18e-34 129
Msa0858570 MtrunA17_Chr1g0167931 28.329 353 201 8 7 355 13 317 3.04e-34 128
Msa0858570 MtrunA17_Chr5g0420881 40.559 143 85 0 213 355 1 143 4.64e-34 123
Msa0858570 MtrunA17_Chr6g0486831 31.270 307 184 11 51 336 20 320 1.93e-33 126
Msa0858570 MtrunA17_Chr7g0235981 33.091 275 171 4 87 355 59 326 2.14e-33 126
Msa0858570 MtrunA17_Chr4g0055871 32.237 304 180 10 45 336 5 294 2.84e-33 125
Msa0858570 MtrunA17_Chr2g0313111 28.296 311 189 12 40 337 17 306 5.75e-33 125
Msa0858570 MtrunA17_Chr8g0389941 30.877 285 173 9 72 336 51 331 3.57e-32 123
Msa0858570 MtrunA17_Chr3g0126761 38.506 174 105 2 165 338 43 214 1.18e-31 119
Msa0858570 MtrunA17_Chr4g0068891 27.974 311 204 8 34 337 5 302 6.31e-31 119
Msa0858570 MtrunA17_Chr1g0148771 29.293 297 188 9 44 336 58 336 1.40e-30 119
Msa0858570 MtrunA17_Chr5g0394071 36.571 175 100 4 168 341 4 168 2.16e-29 112
Msa0858570 MtrunA17_Chr8g0336801 40.690 145 82 2 214 355 12 155 8.18e-29 109
Msa0858570 MtrunA17_Chr4g0052251 28.520 277 182 11 72 337 43 314 1.45e-28 113
Msa0858570 MtrunA17_Chr8g0375661 35.294 153 97 2 11 162 14 165 1.10e-27 107
Msa0858570 MtrunA17_Chr7g0233661 44.275 131 66 2 211 341 19 142 2.44e-27 105
Msa0858570 MtrunA17_Chr8g0375641 34.356 163 99 3 11 169 14 172 3.97e-27 105
Msa0858570 MtrunA17_Chr4g0064771 33.333 162 107 1 167 328 27 187 8.36e-27 105
Msa0858570 MtrunA17_Chr1g0194321 28.923 325 193 13 37 337 4 314 1.08e-26 108
Msa0858570 MtrunA17_Chr8g0362741 30.337 267 157 9 14 277 33 273 1.80e-26 106
Msa0858570 MtrunA17_Chr5g0407781 26.117 291 198 5 48 337 4 278 1.80e-26 107
Msa0858570 MtrunA17_Chr5g0407731 27.148 291 193 6 49 337 33 306 5.18e-26 106
Msa0858570 MtrunA17_Chr8g0348951 28.852 305 195 10 46 339 2 295 1.16e-25 105
Msa0858570 MtrunA17_Chr4g0037611 38.415 164 89 5 176 337 1 154 1.35e-25 101
Msa0858570 MtrunA17_Chr8g0336831 31.053 190 125 3 45 233 56 240 1.65e-23 97.8
Msa0858570 MtrunA17_Chr1g0170631 32.990 194 123 4 165 355 2 191 2.05e-23 96.3
Msa0858570 MtrunA17_Chr1g0158011 32.000 175 114 4 164 335 68 240 3.25e-23 97.4
Msa0858570 MtrunA17_Chr4g0004061 30.275 327 189 14 44 347 4 314 1.92e-22 96.3
Msa0858570 MtrunA17_Chr7g0247741 28.736 261 160 10 74 324 30 274 3.09e-21 92.8
Msa0858570 MtrunA17_Chr8g0364171 39.474 114 66 2 164 277 16 126 1.20e-20 87.0
Msa0858570 MtrunA17_Chr8g0336871 34.270 178 105 4 177 351 1 169 1.23e-20 87.8
Msa0858570 MtrunA17_Chr4g0004071 28.247 308 201 11 44 343 4 299 1.28e-20 91.3
Msa0858570 MtrunA17_Chr5g0420891 30.065 153 102 2 14 166 12 159 5.26e-20 85.9
Msa0858570 MtrunA17_Chr1g0161101 47.573 103 43 3 208 309 401 493 9.09e-20 90.5
Msa0858570 MtrunA17_Chr1g0158021 27.039 233 156 6 40 269 40 261 1.68e-19 87.0
Msa0858570 MtrunA17_Chr1g0158031 32.716 162 100 5 178 335 3 159 3.90e-19 84.0
Msa0858570 MtrunA17_Chr8g0375581 56.250 64 28 0 210 273 22 85 4.48e-19 80.9
Msa0858570 MtrunA17_Chr3g0138351 24.918 305 198 7 49 336 7 297 9.07e-19 85.9
Msa0858570 MtrunA17_Chr3g0092581 32.468 154 99 4 191 343 16 165 1.41e-18 82.8
Msa0858570 MtrunA17_Chr2g0293931 32.335 167 102 7 180 337 22 186 1.80e-17 80.1
Msa0858570 MtrunA17_Chr4g0075431 33.333 162 86 6 49 204 4 149 1.80e-17 79.3
Msa0858570 MtrunA17_Chr8g0375591 34.513 113 74 0 14 126 11 123 2.49e-17 77.8
Msa0858570 MtrunA17_Chr4g0009561 23.718 312 206 10 43 336 1 298 4.02e-16 78.2
Msa0858570 MtrunA17_Chr4g0009541 23.569 297 202 9 70 354 29 312 1.24e-15 76.6
Msa0858570 MtrunA17_Chr8g0364161 34.091 132 78 4 14 141 33 159 4.74e-15 72.8
Msa0858570 MtrunA17_Chr7g0235991 30.405 148 97 3 49 195 21 163 1.71e-14 71.2
Msa0858570 MtrunA17_Chr2g0319521 33.036 112 72 2 166 277 16 124 4.08e-14 68.9
Msa0858570 MtrunA17_Chr1g0167921 38.532 109 64 2 168 276 51 156 9.25e-14 68.9
Msa0858570 MtrunA17_Chr7g0256741 27.157 313 208 13 49 351 10 312 1.12e-13 71.2
Msa0858570 MtrunA17_Chr8g0336791 29.412 136 92 2 45 179 56 188 2.34e-13 68.2
Msa0858570 MtrunA17_Chr2g0311611 41.667 72 34 2 213 277 1 71 4.05e-13 63.9
Msa0858570 MtrunA17_Chr7g0219991 33.019 106 68 1 167 272 249 351 7.07e-13 68.9
Msa0858570 MtrunA17_Chr7g0219991 30.612 147 90 4 24 166 15 153 7.72e-11 62.8
Msa0858570 MtrunA17_Chr1g0148781 24.422 303 200 11 53 340 17 305 8.11e-13 68.6
Msa0858570 MtrunA17_Chr2g0311641 30.147 136 88 3 14 147 22 152 1.60e-12 65.1
Msa0858570 MtrunA17_Chr4g0037601 37.805 82 49 1 31 112 24 103 5.18e-12 63.5
Msa0858570 MtrunA17_Chr2g0293941 40.244 82 38 3 48 128 18 89 4.58e-11 60.8
Msa0858570 MtrunA17_Chr1g0170641 28.477 151 98 6 19 166 18 161 8.34e-11 60.1
Msa0858570 MtrunA17_Chr2g0319531 30.909 110 67 4 41 145 31 136 8.92e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858570 AT5G05600.1 67.978 356 114 0 3 358 16 371 0.0 508
Msa0858570 AT3G11180.1 68.436 358 105 2 5 358 47 400 0.0 507
Msa0858570 AT3G55970.1 66.017 359 117 3 5 358 5 363 3.72e-174 488
Msa0858570 AT3G11180.2 68.314 344 101 2 5 344 47 386 4.77e-174 490
Msa0858570 AT2G38240.1 58.571 350 138 3 7 354 5 349 3.53e-154 437
Msa0858570 AT5G05600.2 66.909 275 91 0 3 277 16 290 1.81e-136 390
Msa0858570 AT3G55970.2 67.266 278 86 3 5 277 5 282 1.87e-133 383
Msa0858570 AT4G10500.1 40.774 336 188 7 25 357 20 347 5.50e-79 246
Msa0858570 AT1G17020.1 35.897 351 221 3 7 355 9 357 4.51e-78 244
Msa0858570 AT4G10490.1 41.667 324 171 9 20 336 13 325 5.37e-77 241
Msa0858570 AT4G25300.1 35.484 341 217 2 15 355 18 355 1.06e-75 238
Msa0858570 AT1G78550.1 33.428 353 229 3 5 355 7 355 4.46e-75 236
Msa0858570 AT1G17010.1 35.028 354 220 6 7 355 9 357 2.58e-73 232
Msa0858570 AT4G22880.1 36.182 351 204 7 14 352 7 349 3.09e-70 224
Msa0858570 AT4G22880.2 36.182 351 204 7 14 352 7 349 3.09e-70 224
Msa0858570 AT4G22880.3 36.182 351 204 7 14 352 7 349 3.09e-70 224
Msa0858570 AT5G24530.1 36.792 318 185 7 24 336 14 320 4.21e-70 223
Msa0858570 AT3G21420.1 37.500 328 198 5 14 336 17 342 6.02e-70 223
Msa0858570 AT5G08640.2 36.697 327 196 5 14 336 6 325 6.72e-67 214
Msa0858570 AT5G08640.1 36.697 327 196 5 14 336 6 325 6.72e-67 214
Msa0858570 AT4G25310.1 35.569 343 211 6 15 355 18 352 7.80e-67 215
Msa0858570 AT4G16330.2 38.462 312 172 7 48 354 66 362 2.75e-66 214
Msa0858570 AT3G51240.1 38.065 310 184 6 28 335 18 321 1.54e-63 206
Msa0858570 AT3G13610.1 34.770 348 207 9 14 355 27 360 4.89e-63 205
Msa0858570 AT1G12010.1 34.810 316 192 6 43 356 1 304 2.54e-62 202
Msa0858570 AT1G78550.2 34.545 275 178 1 81 355 5 277 5.02e-61 197
Msa0858570 AT1G62380.1 36.610 295 174 5 43 336 1 283 6.02e-61 199
Msa0858570 AT3G60290.1 35.380 342 211 7 17 355 19 353 6.02e-61 200
Msa0858570 AT1G05010.1 36.392 316 184 8 48 356 3 308 8.85e-60 196
Msa0858570 AT2G44800.1 35.866 329 199 8 16 340 18 338 1.31e-59 196
Msa0858570 AT5G54000.2 35.404 322 199 6 23 339 17 334 8.48e-59 194
Msa0858570 AT5G20400.1 34.839 310 194 5 23 328 17 322 1.34e-58 193
Msa0858570 AT1G49390.1 36.140 285 180 2 48 332 44 326 2.35e-58 192
Msa0858570 AT2G36690.2 34.857 350 212 9 14 355 21 362 3.54e-57 190
Msa0858570 AT2G36690.1 34.857 350 212 9 14 355 21 362 3.54e-57 190
Msa0858570 AT1G77330.1 36.735 294 169 4 49 336 3 285 3.89e-57 188
Msa0858570 AT5G20550.1 33.866 313 194 5 23 328 17 323 1.08e-56 188
Msa0858570 AT1G55290.1 32.948 346 211 9 14 352 26 357 6.01e-56 187
Msa0858570 AT4G16330.1 40.000 255 142 5 104 354 9 256 2.26e-55 182
Msa0858570 AT3G19010.1 33.041 342 206 9 29 355 8 341 3.67e-55 184
Msa0858570 AT3G19010.4 33.041 342 206 9 29 355 8 341 3.67e-55 184
Msa0858570 AT3G19000.1 36.615 325 184 8 46 355 29 346 4.25e-54 182
Msa0858570 AT1G06650.2 34.844 353 209 8 14 355 26 368 4.55e-54 182
Msa0858570 AT1G06620.1 34.384 349 211 7 14 355 27 364 7.71e-54 181
Msa0858570 AT4G25420.1 34.769 325 198 7 24 341 39 356 7.79e-54 182
Msa0858570 AT5G54000.1 37.500 256 157 2 85 339 1 254 3.45e-53 177
Msa0858570 AT3G12900.1 34.756 328 196 8 14 336 22 336 7.90e-53 179
Msa0858570 AT2G19590.1 36.396 283 166 6 42 322 4 274 2.53e-52 176
Msa0858570 AT1G49390.2 36.694 248 156 1 85 332 1 247 3.87e-52 174
Msa0858570 AT1G06640.1 35.411 353 207 8 14 355 26 368 2.30e-51 175
Msa0858570 AT4G25310.2 32.092 349 197 8 11 355 12 324 2.18e-50 171
Msa0858570 AT5G63600.1 30.421 309 198 5 34 336 12 309 4.45e-50 171
Msa0858570 AT5G43440.1 33.143 350 217 8 14 355 24 364 1.58e-49 170
Msa0858570 AT5G63600.2 30.645 310 197 6 34 336 12 310 3.25e-49 168
Msa0858570 AT3G51240.2 41.102 236 133 4 102 335 6 237 4.12e-49 166
Msa0858570 AT5G63590.1 34.694 294 177 5 48 333 13 299 1.34e-48 166
Msa0858570 AT2G30840.1 33.803 355 222 9 7 355 14 361 1.70e-48 167
Msa0858570 AT5G51810.1 31.395 344 205 9 25 356 42 366 2.16e-48 167
Msa0858570 AT1G03410.2 35.329 334 194 10 14 336 20 342 2.12e-47 164
Msa0858570 AT1G03410.1 35.329 334 194 10 14 336 57 379 4.25e-47 164
Msa0858570 AT1G60980.1 32.523 329 199 8 23 339 34 351 5.51e-47 164
Msa0858570 AT1G15550.1 34.343 297 178 6 45 336 53 337 5.66e-47 163
Msa0858570 AT5G07200.1 32.110 327 206 6 25 341 37 357 7.60e-47 164
Msa0858570 AT1G04350.1 32.000 350 218 10 14 355 22 359 3.67e-46 161
Msa0858570 AT3G19010.3 30.994 342 183 9 29 355 8 311 6.47e-46 159
Msa0858570 AT5G59540.1 31.661 319 192 9 49 355 61 365 2.36e-45 159
Msa0858570 AT5G43450.1 34.234 333 195 10 14 336 24 342 3.12e-45 159
Msa0858570 AT2G30840.3 33.521 355 217 10 7 355 14 355 4.18e-45 158
Msa0858570 AT2G19590.2 37.500 248 144 5 77 322 21 259 7.58e-45 156
Msa0858570 AT5G59530.1 32.213 357 210 11 14 355 24 363 1.06e-44 157
Msa0858570 AT1G06645.1 33.144 353 212 8 14 355 39 378 1.85e-44 157
Msa0858570 AT1G80340.1 34.915 295 173 8 48 336 49 330 2.72e-44 156
Msa0858570 AT5G07480.1 31.940 335 208 7 15 340 14 337 6.62e-44 155
Msa0858570 AT1G44090.1 34.000 300 190 5 48 341 62 359 9.22e-44 155
Msa0858570 AT5G12270.1 32.464 345 210 9 22 357 30 360 1.00e-43 155
Msa0858570 AT2G30830.1 32.849 344 214 8 12 349 19 351 1.01e-43 155
Msa0858570 AT3G19000.2 37.247 247 134 7 46 277 29 269 4.16e-42 148
Msa0858570 AT1G80330.1 33.443 305 168 11 48 336 48 333 7.78e-42 150
Msa0858570 AT1G04380.1 33.010 309 188 8 49 351 45 340 1.60e-41 149
Msa0858570 AT3G61400.1 32.164 342 212 9 7 336 18 351 2.14e-41 149
Msa0858570 AT1G06650.1 34.799 273 167 5 14 282 26 291 8.48e-41 146
Msa0858570 AT4G21200.1 31.715 309 176 10 38 337 32 314 3.03e-40 145
Msa0858570 AT2G25450.1 30.986 355 219 11 12 355 19 358 3.83e-40 145
Msa0858570 AT4G25300.2 36.316 190 120 1 166 355 73 261 6.38e-40 142
Msa0858570 AT5G63595.1 31.387 274 161 5 40 313 16 262 9.04e-40 142
Msa0858570 AT1G03400.1 31.579 342 200 10 7 336 13 332 1.12e-39 144
Msa0858570 AT1G30040.1 30.667 300 188 10 45 337 27 313 2.50e-39 142
Msa0858570 AT5G63580.2 36.207 232 137 4 48 277 18 240 4.03e-39 139
Msa0858570 AT4G21690.1 30.820 305 186 9 44 336 41 332 7.14e-39 142
Msa0858570 AT1G06620.2 33.208 265 168 5 14 277 27 283 1.05e-38 139
Msa0858570 AT5G63580.1 35.776 232 138 4 46 275 16 238 2.01e-38 138
Msa0858570 AT5G43935.1 31.544 298 166 8 46 336 16 282 2.56e-38 139
Msa0858570 AT4G25420.2 33.716 261 159 7 24 277 39 292 2.62e-38 139
Msa0858570 AT3G19010.2 33.208 265 155 8 29 278 8 265 3.10e-38 139
Msa0858570 AT1G06640.2 35.821 268 161 5 14 277 26 286 5.10e-38 139
Msa0858570 AT1G06640.3 35.985 264 158 5 14 273 26 282 1.18e-37 137
Msa0858570 AT1G78440.1 30.492 305 177 12 49 337 18 303 1.46e-37 137
Msa0858570 AT5G43440.2 33.333 270 168 6 14 279 24 285 1.64e-37 136
Msa0858570 AT3G50210.4 32.331 266 162 8 66 315 32 295 1.42e-36 135
Msa0858570 AT3G50210.1 32.331 266 162 8 66 315 32 295 1.42e-36 135
Msa0858570 AT3G50210.3 32.331 266 162 8 66 315 32 295 1.42e-36 135
Msa0858570 AT2G30840.2 32.967 273 173 6 7 276 14 279 1.37e-35 132
Msa0858570 AT1G50960.1 28.013 307 203 6 34 337 24 315 4.22e-35 131
Msa0858570 AT5G51810.2 31.086 267 166 6 25 284 42 297 5.23e-35 130
Msa0858570 AT2G34555.1 30.303 297 186 11 49 338 27 309 7.46e-35 130
Msa0858570 AT1G03400.2 29.459 370 199 11 7 336 13 360 4.84e-34 129
Msa0858570 AT5G43450.2 33.829 269 159 8 14 276 24 279 5.39e-33 124
Msa0858570 AT3G49620.1 31.679 262 154 8 71 315 63 316 3.24e-32 124
Msa0858570 AT3G49630.1 29.553 291 173 10 49 315 9 291 6.77e-32 122
Msa0858570 AT3G49630.3 29.963 267 162 8 66 315 29 287 7.16e-32 122
Msa0858570 AT3G61400.2 31.655 278 176 7 7 277 18 288 2.73e-31 120
Msa0858570 AT5G59540.2 30.802 237 143 7 49 277 61 284 1.28e-30 118
Msa0858570 AT5G58660.1 32.203 295 161 11 48 316 33 314 1.69e-29 116
Msa0858570 AT1G04380.2 33.047 233 142 6 49 279 45 265 1.93e-29 114
Msa0858570 AT3G46500.5 28.197 305 200 9 45 336 10 308 2.85e-29 115
Msa0858570 AT4G23340.1 33.968 315 170 13 41 339 2 294 4.28e-28 112
Msa0858570 AT3G46490.1 28.808 302 185 9 57 336 22 315 2.23e-27 110
Msa0858570 AT1G47990.1 27.796 313 189 10 42 337 8 300 4.75e-27 109
Msa0858570 AT5G07480.2 34.555 191 112 3 158 340 43 228 8.09e-27 107
Msa0858570 AT1G02400.1 29.530 298 192 11 48 337 23 310 9.68e-27 108
Msa0858570 AT1G30040.2 30.000 240 148 10 45 277 27 253 3.73e-26 105
Msa0858570 AT3G46490.2 28.889 270 162 9 57 304 22 283 2.78e-24 101
Msa0858570 AT3G47190.1 28.378 296 182 9 30 310 11 291 3.88e-24 101
Msa0858570 AT3G46500.7 28.470 281 172 12 45 307 10 279 1.43e-23 99.4
Msa0858570 AT3G50210.2 33.333 165 104 3 156 315 50 213 4.85e-23 97.1
Msa0858570 AT4G16765.6 30.493 223 142 6 125 336 15 235 7.72e-23 96.3
Msa0858570 AT4G16765.1 30.493 223 142 6 125 336 15 235 7.72e-23 96.3
Msa0858570 AT4G16765.2 30.493 223 142 6 125 336 15 235 7.72e-23 96.3
Msa0858570 AT5G58660.2 31.418 261 139 11 48 283 33 278 3.04e-22 95.5
Msa0858570 AT1G14130.1 28.146 302 187 8 49 342 9 288 3.08e-22 95.9
Msa0858570 AT3G49630.2 30.851 188 116 5 152 333 56 235 3.16e-22 94.7
Msa0858570 AT4G16765.3 31.163 215 135 6 125 328 15 227 7.09e-22 93.2
Msa0858570 AT1G35190.1 31.061 264 157 11 72 314 29 288 9.18e-22 95.1
Msa0858570 AT1G35190.2 31.679 262 135 11 72 314 29 265 1.78e-21 93.6
Msa0858570 AT1G14120.2 27.815 302 175 8 42 328 1 274 1.85e-21 94.0
Msa0858570 AT1G14120.1 27.815 302 175 8 42 328 1 274 1.85e-21 94.0
Msa0858570 AT1G14120.3 27.815 302 175 8 42 328 1 274 1.85e-21 94.0
Msa0858570 AT5G51310.1 28.906 256 157 8 67 305 17 264 1.26e-19 89.0
Msa0858570 AT4G23340.2 36.932 176 102 6 171 339 3 176 2.01e-18 83.2
Msa0858570 AT3G46500.10 29.101 189 124 5 156 336 48 234 1.91e-17 81.3
Msa0858570 AT3G46500.1 29.101 189 124 5 156 336 48 234 1.91e-17 81.3
Msa0858570 AT3G46500.4 29.885 174 114 4 169 336 1 172 2.41e-17 79.7
Msa0858570 AT4G16770.1 30.000 240 144 9 43 267 16 246 7.58e-17 79.7
Msa0858570 AT4G03070.1 25.000 304 189 11 72 356 38 321 3.70e-16 79.0
Msa0858570 AT1G52820.1 23.750 320 214 9 49 356 12 313 5.40e-16 78.2
Msa0858570 AT3G46480.1 27.857 280 169 10 63 331 6 263 1.41e-15 76.6
Msa0858570 AT4G16765.4 30.994 171 106 5 125 284 15 184 1.56e-15 74.3
Msa0858570 AT1G28030.1 27.419 310 197 11 38 333 2 297 1.82e-15 76.6
Msa0858570 AT4G22870.1 39.796 98 55 2 246 339 2 99 2.72e-15 71.6
Msa0858570 AT4G16765.5 37.607 117 66 3 225 336 75 189 6.08e-15 73.2
Msa0858570 AT1G52800.1 25.836 329 214 12 39 356 1 310 7.83e-14 72.0
Msa0858570 AT1G02400.2 27.273 253 167 10 48 293 23 265 1.06e-13 70.9
Msa0858570 AT4G22870.2 34.454 119 64 4 241 352 35 146 2.21e-13 67.8
Msa0858570 AT3G46500.9 26.596 188 106 6 156 336 48 210 1.10e-12 67.4
Msa0858570 AT3G46500.3 28.834 163 100 7 156 307 48 205 3.95e-12 65.5
Msa0858570 AT3G46500.6 29.530 149 91 6 168 307 31 174 1.74e-11 63.2
Msa0858570 AT3G46500.8 29.530 149 91 6 168 307 31 174 1.74e-11 63.2

Find 126 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTCCTGATTGGTAATT+TGG 0.047057 5_4:+56107590 Msa0858570:three_prime_UTR
ATCTTTGTACCCTCACTTTC+TGG 0.085591 5_4:-56107536 None:intergenic
TCAATGTACATGAGTATTTA+TGG 0.137275 5_4:+56107748 Msa0858570:three_prime_UTR
AAAGATTGAACTGGGATTAT+TGG 0.191708 5_4:-56099404 None:intergenic
CTCAATTGGAATGTCACTTT+TGG 0.194292 5_4:-56107081 None:intergenic
GTCAATTATTGGGATATTAT+TGG 0.196961 5_4:-56099513 None:intergenic
CTTCTCTGCCTCCCTCTTGC+AGG 0.218861 5_4:+56099852 Msa0858570:CDS
CCAGGGCAATGTTTGTAATA+TGG 0.229960 5_4:+56107663 Msa0858570:three_prime_UTR
GGCTTTACCAATTCCTTTGC+TGG 0.242234 5_4:-56107104 None:intergenic
AATGCATTTATTGTCAATAT+TGG 0.257707 5_4:+56105854 Msa0858570:CDS
AGGGAGGTGTTTGATGAATA+TGG 0.259252 5_4:+56105557 Msa0858570:intron
AAACCTCTAAGGTCAATTAT+TGG 0.261828 5_4:-56099524 None:intergenic
CTCTTCCTGATTGGTAATTT+GGG 0.268749 5_4:+56107591 Msa0858570:three_prime_UTR
TTATCTTCCTTTGTCTTTGA+AGG 0.276389 5_4:+56099814 Msa0858570:CDS
AAGTTCGTAAAGGTGATAAT+TGG 0.282376 5_4:+56105810 Msa0858570:CDS
CTTAAATGTTGTTGTTAGAT+AGG 0.286203 5_4:+56107476 Msa0858570:three_prime_UTR
CAACAATGGCTGTGGACATT+TGG 0.290112 5_4:-56105711 None:intergenic
GGGTAAAGGGCAGGTTTATC+TGG 0.301600 5_4:-56107125 None:intergenic
AATTCCTTTGCTGGCTCAAT+TGG 0.304920 5_4:-56107095 None:intergenic
CAATATTGGTGATCAAATTC+AGG 0.308629 5_4:+56105868 Msa0858570:CDS
AGTTGGTGTGCGTGTGAGTT+AGG 0.332532 5_4:-56099244 None:intergenic
CCACTTCTCAACCGATGATT+GGG 0.335482 5_4:+56107620 Msa0858570:three_prime_UTR
ATCCCAATAATTGACCTTAG+AGG 0.336722 5_4:+56099521 Msa0858570:CDS
CTATGACCTTTGATGAATAT+AGG 0.350688 5_4:+56107150 Msa0858570:CDS
AACAATGGCTGTGGACATTT+GGG 0.360761 5_4:-56105710 None:intergenic
CTTTCGGATAAAGATTGAAC+TGG 0.371330 5_4:-56099413 None:intergenic
GATTGAATCTATGCAACTTT+CGG 0.372204 5_4:-56099429 None:intergenic
AACCTCTAAGGTCAATTATT+GGG 0.373427 5_4:-56099523 None:intergenic
CCACAGCCATTGTTGACTCT+TGG 0.385350 5_4:+56105719 Msa0858570:CDS
TCTAAAATAGAGTTTATTGA+TGG 0.387411 5_4:-56099485 None:intergenic
TAGTACTATGTAAACCTCTA+AGG 0.388602 5_4:-56099535 None:intergenic
CCCACTTCTCAACCGATGAT+TGG 0.393246 5_4:+56107619 Msa0858570:three_prime_UTR
CGGCTTGTGATTAAATGTTA+AGG 0.394115 5_4:-56107415 None:intergenic
TCCAAGATGATACGCATGTT+TGG 0.397662 5_4:+56107229 Msa0858570:exon
AGAAAGGTGCTATTCTTGAT+TGG 0.399483 5_4:+56099771 Msa0858570:CDS
GTGAGGTGAGTTTGTAGGTG+TGG 0.400935 5_4:-56099205 None:intergenic
AATTGAGCCAGCAAAGGAAT+TGG 0.401434 5_4:+56107097 Msa0858570:CDS
GATGTTTACCTCTTCCTGAT+TGG 0.404935 5_4:+56107582 Msa0858570:three_prime_UTR
ACAATAAATGCATTACGAAC+AGG 0.405344 5_4:-56105845 None:intergenic
GGAGGGTGAGGTGAGTTTGT+AGG 0.405857 5_4:-56099210 None:intergenic
GATGCATGCACCATGATTCC+AGG 0.407244 5_4:+56107645 Msa0858570:three_prime_UTR
TGAACTGGGATTATTGGTTC+AGG 0.411262 5_4:-56099398 None:intergenic
TAAAGGTGATAATTGGATTA+CGG 0.411535 5_4:+56105817 Msa0858570:CDS
AAGATTGCATGTGAAATTGA+TGG 0.412397 5_4:+56107554 Msa0858570:three_prime_UTR
ATCTAATAATATCAACTAGA+AGG 0.420236 5_4:-56107450 None:intergenic
AGCCTCAGAGATTTGCTTGA+AGG 0.421693 5_4:-56099579 None:intergenic
CAAACATTGCCCTGGAATCA+TGG 0.422370 5_4:-56107655 None:intergenic
TTGGTTCAGGCCAATCTTGT+GGG 0.423737 5_4:-56099385 None:intergenic
TGGTGTTAGCCATGATTTGA+TGG 0.425426 5_4:+56099637 Msa0858570:CDS
TCTATCTATAAACCTTGGAT+TGG 0.425871 5_4:+56105619 Msa0858570:CDS
CTGCAAGAGGGAGGCAGAGA+AGG 0.432067 5_4:-56099851 None:intergenic
AAATGATCAGCCCACAAGAT+TGG 0.435138 5_4:+56099375 Msa0858570:exon
AGACCATGTACTTGATCATC+TGG 0.440312 5_4:-56105785 None:intergenic
GGGGTTTGATATATCTTTGA+GGG 0.441698 5_4:-56099451 None:intergenic
TCCAAACATGCGTATCATCT+TGG 0.443109 5_4:-56107230 None:intergenic
AAGATATTGGTGCTTGCATA+AGG 0.450245 5_4:+56105675 Msa0858570:CDS
ATTGGTTCAGGCCAATCTTG+TGG 0.457991 5_4:-56099386 None:intergenic
TATGATTTGATGTAATGCTT+AGG 0.461018 5_4:+56107713 Msa0858570:three_prime_UTR
TGGATTTAGCTAAGGAAACT+TGG 0.461744 5_4:+56099657 Msa0858570:CDS
AAAGGTCATAGCAGGGTAAA+GGG 0.463621 5_4:-56107138 None:intergenic
CCCAATCATCGGTTGAGAAG+TGG 0.464312 5_4:-56107620 None:intergenic
GGAAAGAGAAAAGGAGGGTG+AGG 0.468511 5_4:-56099222 None:intergenic
TGATGAATATGGGATAGAAT+TGG 0.475949 5_4:+56105568 Msa0858570:CDS
GAAAATTCTCTTCCAATCCA+AGG 0.476253 5_4:-56105631 None:intergenic
TTCTAAGCAATGCAATCTAC+AGG 0.476607 5_4:+56106991 Msa0858570:CDS
CTCTGAGGCTTGTAAAGAGT+GGG 0.480774 5_4:+56099592 Msa0858570:CDS
CTTTGAAGGACTACAACAAA+TGG 0.482191 5_4:+56099828 Msa0858570:CDS
TATTCATCAAAGGTCATAGC+AGG 0.486350 5_4:-56107146 None:intergenic
GTTGGTGTGCGTGTGAGTTA+GGG 0.487166 5_4:-56099243 None:intergenic
TTATCATCACATTCAGATCC+AGG 0.490565 5_4:+56105743 Msa0858570:CDS
GACTACCCAAATTACCAATC+AGG 0.492773 5_4:-56107596 None:intergenic
GGGAGGTGTTTGATGAATAT+GGG 0.498922 5_4:+56105558 Msa0858570:intron
AAAGTTCTATCTATAAACCT+TGG 0.499746 5_4:+56105614 Msa0858570:CDS
CAAAGGTCATAGCAGGGTAA+AGG 0.499854 5_4:-56107139 None:intergenic
TATAATTGTTTCACTTCCAT+AGG 0.501870 5_4:-56099698 None:intergenic
GTGAGTTAGGGAAAGAGAAA+AGG 0.502992 5_4:-56099231 None:intergenic
TAGCTAAATCCATCAAATCA+TGG 0.503472 5_4:-56099646 None:intergenic
AGTTAGGGAAAGAGAAAAGG+AGG 0.506173 5_4:-56099228 None:intergenic
TGAGGTGAGTTTGTAGGTGT+GGG 0.506190 5_4:-56099204 None:intergenic
ATCAATTAAGCCAGAAAGTG+AGG 0.518620 5_4:+56107526 Msa0858570:three_prime_UTR
TGATTTGATGGATTTAGCTA+AGG 0.519818 5_4:+56099649 Msa0858570:CDS
TTATTGATGGACGGTCACTA+AGG 0.528777 5_4:-56099472 None:intergenic
CCAAATTACCAATCAGGAAG+AGG 0.532237 5_4:-56107590 None:intergenic
TTCTTTCAAATTGTTAACCA+TGG 0.533817 5_4:+56099617 Msa0858570:CDS
AGGGGTTTGATATATCTTTG+AGG 0.539325 5_4:-56099452 None:intergenic
AGTAGACTTGGTGTTAAGAA+AGG 0.539816 5_4:+56099755 Msa0858570:CDS
CCATATTACAAACATTGCCC+TGG 0.541395 5_4:-56107663 None:intergenic
TATTGATGGACGGTCACTAA+GGG 0.546407 5_4:-56099471 None:intergenic
CCAATCATCGGTTGAGAAGT+GGG 0.548694 5_4:-56107619 None:intergenic
GAAGGGTATGGTAGTAGACT+TGG 0.550629 5_4:+56099743 Msa0858570:CDS
GTCATAGCAGGGTAAAGGGC+AGG 0.551486 5_4:-56107134 None:intergenic
TTACCAGATGATCAAGTACA+TGG 0.559165 5_4:+56105782 Msa0858570:CDS
GGGATTGTAGAAGAAAGCTA+AGG 0.562257 5_4:-56107060 None:intergenic
TTGTAGTCCTTCAAAGACAA+AGG 0.564851 5_4:-56099821 None:intergenic
GCATGCATCACCCCAATCAT+CGG 0.576316 5_4:-56107631 None:intergenic
GAAAAGCCTATATTCATCAA+AGG 0.580964 5_4:-56107156 None:intergenic
CATGGTCTTCAAGTTCGTAA+AGG 0.581161 5_4:+56105800 Msa0858570:CDS
TTTCGGATAAAGATTGAACT+GGG 0.585395 5_4:-56099412 None:intergenic
CCAAGAGTCAACAATGGCTG+TGG 0.585880 5_4:-56105719 None:intergenic
TCTCTGAGGCTTGTAAAGAG+TGG 0.589060 5_4:+56099591 Msa0858570:CDS
AAATAGAGTTTATTGATGGA+CGG 0.601584 5_4:-56099481 None:intergenic
CTAGAAGGAGGTTATATACA+CGG 0.608151 5_4:-56107435 None:intergenic
TAAGTACTTAAACCTGCAAG+AGG 0.610922 5_4:-56099864 None:intergenic
GTTAGGGAAAGAGAAAAGGA+GGG 0.612106 5_4:-56099227 None:intergenic
ATGCATGCACCATGATTCCA+GGG 0.616013 5_4:+56107646 Msa0858570:three_prime_UTR
AACAAAAGAGTAATGCCACC+TGG 0.618434 5_4:-56105761 None:intergenic
TCAAATCATGGCTAACACCA+TGG 0.620406 5_4:-56099634 None:intergenic
CATTCCAATTGAGCCAGCAA+AGG 0.622477 5_4:+56107091 Msa0858570:CDS
TACTTAAACCTGCAAGAGGG+AGG 0.625938 5_4:-56099860 None:intergenic
GATACGCATGTTTGGATCAG+CGG 0.626422 5_4:+56107237 Msa0858570:exon
TGTTTATTTCTGTGTCAGTG+AGG 0.637444 5_4:+56107291 Msa0858570:three_prime_UTR
CACTTCTCAACCGATGATTG+GGG 0.638659 5_4:+56107621 Msa0858570:three_prime_UTR
TCAATTAAGCCAGAAAGTGA+GGG 0.644139 5_4:+56107527 Msa0858570:three_prime_UTR
ATTGATGGACGGTCACTAAG+GGG 0.650972 5_4:-56099470 None:intergenic
AGATATTGGTGCTTGCATAA+GGG 0.652882 5_4:+56105676 Msa0858570:CDS
AACCTTCAAGCAAATCTCTG+AGG 0.652889 5_4:+56099577 Msa0858570:CDS
AATTGGTGAAGTTATGTGAG+AGG 0.660567 5_4:+56105585 Msa0858570:CDS
TAATAATATCAACTAGAAGG+AGG 0.661177 5_4:-56107447 None:intergenic
CAATCATCGGTTGAGAAGTG+GGG 0.663077 5_4:-56107618 None:intergenic
ATTCATCAAAGGTCATAGCA+GGG 0.668718 5_4:-56107145 None:intergenic
GATAAACCAAGAGTCAACAA+TGG 0.670539 5_4:-56105725 None:intergenic
AAGTACTTAAACCTGCAAGA+GGG 0.673362 5_4:-56099863 None:intergenic
TCTGAGGCTTGTAAAGAGTG+GGG 0.685796 5_4:+56099593 Msa0858570:CDS
ATTAGAATGAGGGGTCCATG+TGG 0.696122 5_4:+56107179 Msa0858570:CDS
TCATCACATTCAGATCCAGG+TGG 0.726988 5_4:+56105746 Msa0858570:CDS
AGTGCTCTAATATAAATGTG+TGG 0.746903 5_4:-56099310 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTAAAAAAACACA+TGG - chr5_4:56100944-56100963 None:intergenic 10.0%
!!! ATTAGATTTAATACTTTTAA+TGG + chr5_4:56101856-56101875 Msa0858570:intron 10.0%
!!! TTATTAAGATAAATTTTGAT+TGG - chr5_4:56102293-56102312 None:intergenic 10.0%
!!! TTATATTAACTATTTTTGTT+TGG + chr5_4:56102897-56102916 Msa0858570:intron 10.0%
!! AATATTAAAATATGAATAAG+CGG - chr5_4:56103357-56103376 None:intergenic 10.0%
!!! AAAAATTTAAGATTTTAACT+AGG - chr5_4:56103623-56103642 None:intergenic 10.0%
!!! TAAAATTTGTTAACATTTTT+AGG + chr5_4:56103908-56103927 Msa0858570:intron 10.0%
!! ATTTAGTATTATATGTTTAA+AGG + chr5_4:56103942-56103961 Msa0858570:intron 10.0%
!!! ACCTTTTTTTTAATTAAAAT+AGG + chr5_4:56104385-56104404 Msa0858570:intron 10.0%
!!! ACCTATTTTAATTAAAAAAA+AGG - chr5_4:56104389-56104408 None:intergenic 10.0%
!! TGAATCTAAATTTCATTAAT+TGG - chr5_4:56100420-56100439 None:intergenic 15.0%
!!! TTGTGGTTTTTTTTTATTAT+TGG - chr5_4:56100464-56100483 None:intergenic 15.0%
!!! ATACCTATTTTATTAAAAAG+AGG + chr5_4:56100584-56100603 Msa0858570:intron 15.0%
!!! ATTGAAAATTTTGTTTTAGT+AGG + chr5_4:56100643-56100662 Msa0858570:intron 15.0%
!!! AAACCTAATTTTAAGAATAA+AGG + chr5_4:56100675-56100694 Msa0858570:intron 15.0%
!!! AACCTAATTTTAAGAATAAA+GGG + chr5_4:56100676-56100695 Msa0858570:intron 15.0%
!! TCAAATATGAAATAAAAACA+AGG + chr5_4:56100701-56100720 Msa0858570:intron 15.0%
!! TCAAAATATACATATAACTA+AGG - chr5_4:56101900-56101919 None:intergenic 15.0%
!!! TTAATTTTATCTATTATGCA+AGG - chr5_4:56102076-56102095 None:intergenic 15.0%
!!! TAATTAGTAGTGTAAAATTT+TGG - chr5_4:56103256-56103275 None:intergenic 15.0%
!!! AAAATTTTACACTACTAATT+AGG + chr5_4:56103255-56103274 Msa0858570:intron 15.0%
!!! TTGTTTTTATTCATAAATCT+AGG + chr5_4:56103987-56104006 Msa0858570:intron 15.0%
!!! AAAACTAATTGAAAAGTATT+GGG - chr5_4:56104158-56104177 None:intergenic 15.0%
!! CAAAGTTAACATATTTATAT+AGG - chr5_4:56105523-56105542 None:intergenic 15.0%
!!! ATATTCTTATTGATAATGTT+TGG + chr5_4:56105909-56105928 Msa0858570:intron 15.0%
!!! ATAGTATTACGATTTTAAAT+GGG + chr5_4:56106146-56106165 Msa0858570:intron 15.0%
!! CTTAATTATATATGATTGTT+AGG - chr5_4:56106722-56106741 None:intergenic 15.0%
!!! TTAAATTTTCTTGTAAGAGT+TGG - chr5_4:56099264-56099283 None:intergenic 20.0%
!!! TCTAAAATAGAGTTTATTGA+TGG - chr5_4:56099488-56099507 None:intergenic 20.0%
!! TTAGCAAAGAAAATTAGTTA+TGG + chr5_4:56099909-56099928 Msa0858570:intron 20.0%
!!! ACGAAATTAAAGAGATTTTA+TGG + chr5_4:56099977-56099996 Msa0858570:intron 20.0%
!!! ACACCTCTTTTTAATAAAAT+AGG - chr5_4:56100590-56100609 None:intergenic 20.0%
!!! ACCTAATTTTAAGAATAAAG+GGG + chr5_4:56100677-56100696 Msa0858570:intron 20.0%
!! AATATGAAATAAAAACAAGG+TGG + chr5_4:56100704-56100723 Msa0858570:intron 20.0%
!!! AATGTTTTTTTTTCTTTGTC+AGG + chr5_4:56100802-56100821 Msa0858570:intron 20.0%
!!! AAACCTGATTTTAAGAAAAA+AGG + chr5_4:56100902-56100921 Msa0858570:intron 20.0%
!!! AACCTGATTTTAAGAAAAAA+GGG + chr5_4:56100903-56100922 Msa0858570:intron 20.0%
!!! TAGGAATAGAAAAGTATATT+GGG - chr5_4:56100983-56101002 None:intergenic 20.0%
!!! ATAGGAATAGAAAAGTATAT+TGG - chr5_4:56100984-56101003 None:intergenic 20.0%
!! GATACAACATTATTAATACA+AGG + chr5_4:56102027-56102046 Msa0858570:intron 20.0%
!! TAGATGATTACAAGTATATA+AGG + chr5_4:56102222-56102241 Msa0858570:intron 20.0%
!! CATACTAGATCTAAATAAAT+AGG - chr5_4:56102472-56102491 None:intergenic 20.0%
!!! GATTATTACTACTTTTGAAT+TGG + chr5_4:56102569-56102588 Msa0858570:intron 20.0%
!!! TAGTTCAAGTTATATTTAAG+TGG + chr5_4:56102864-56102883 Msa0858570:intron 20.0%
!!! ATTTTTGTTCACTTTGTATT+TGG + chr5_4:56103637-56103656 Msa0858570:intron 20.0%
!!! CAAAACTAATTGAAAAGTAT+TGG - chr5_4:56104159-56104178 None:intergenic 20.0%
!! TTTATTCTTCTAATGATGAT+AGG + chr5_4:56104248-56104267 Msa0858570:intron 20.0%
!!! TACCTGTTTTTATAAAAAAC+AGG - chr5_4:56104475-56104494 None:intergenic 20.0%
!!! GTTTTTTATAAAAACAGGTA+CGG + chr5_4:56104475-56104494 Msa0858570:intron 20.0%
!!! GTCTTAAATCTCTAAAAAAA+AGG + chr5_4:56104582-56104601 Msa0858570:intron 20.0%
!! ATTTAGATACTAAATGTTGA+GGG - chr5_4:56105118-56105137 None:intergenic 20.0%
!! TATTTAGATACTAAATGTTG+AGG - chr5_4:56105119-56105138 None:intergenic 20.0%
!! TTTATGATAGAACATTATGA+CGG - chr5_4:56105450-56105469 None:intergenic 20.0%
!!! AATTTTCTTCAAAATGCTTT+TGG + chr5_4:56105647-56105666 Msa0858570:CDS 20.0%
!! AATGCATTTATTGTCAATAT+TGG + chr5_4:56105854-56105873 Msa0858570:CDS 20.0%
!!! CATAGTATTACGATTTTAAA+TGG + chr5_4:56106145-56106164 Msa0858570:intron 20.0%
!! TTGTAAAGTTTAGAAAATCA+CGG - chr5_4:56106675-56106694 None:intergenic 20.0%
!! ACAAATCATTCATACTTATA+TGG - chr5_4:56106892-56106911 None:intergenic 20.0%
!!! TGTTTATTTTGTGTTTGATA+AGG + chr5_4:56106968-56106987 Msa0858570:intron 20.0%
!! ATCTAATAATATCAACTAGA+AGG - chr5_4:56107453-56107472 None:intergenic 20.0%
! AAATAGAGTTTATTGATGGA+CGG - chr5_4:56099484-56099503 None:intergenic 25.0%
! GTCAATTATTGGGATATTAT+TGG - chr5_4:56099516-56099535 None:intergenic 25.0%
! TTCTTTCAAATTGTTAACCA+TGG + chr5_4:56099617-56099636 Msa0858570:CDS 25.0%
! TATAATTGTTTCACTTCCAT+AGG - chr5_4:56099701-56099720 None:intergenic 25.0%
! TTTATAAACTGTTGTGAACT+CGG + chr5_4:56100377-56100396 Msa0858570:intron 25.0%
!! AGAGGTGTGAAATTTAAATA+AGG + chr5_4:56100602-56100621 Msa0858570:intron 25.0%
!!! CCTAATTTTAAGAATAAAGG+GGG + chr5_4:56100678-56100697 Msa0858570:intron 25.0%
! TCTAAAGATTGAAAAGTTGA+AGG - chr5_4:56100842-56100861 None:intergenic 25.0%
!!! TTTTGAGAAAGTTAGTTCAT+GGG - chr5_4:56101110-56101129 None:intergenic 25.0%
!!! ATTTTGAGAAAGTTAGTTCA+TGG - chr5_4:56101111-56101130 None:intergenic 25.0%
! TTTCTCAAAATCCTCTAATT+CGG + chr5_4:56101120-56101139 Msa0858570:intron 25.0%
! GGATTAGAAACTAAATTTAG+AGG - chr5_4:56101191-56101210 None:intergenic 25.0%
! AGGTAGAAAATTGCTAAAAA+GGG - chr5_4:56101545-56101564 None:intergenic 25.0%
! AAGGTAGAAAATTGCTAAAA+AGG - chr5_4:56101546-56101565 None:intergenic 25.0%
!!! TTCTACCTTGTTTATTTTCT+AGG + chr5_4:56101557-56101576 Msa0858570:intron 25.0%
!!! TTTATTTTCTAGGTCTTGTT+TGG + chr5_4:56101567-56101586 Msa0858570:intron 25.0%
! GGTTGTATTGTGAATTAAAT+GGG + chr5_4:56101707-56101726 Msa0858570:intron 25.0%
! CATTATAATGCTTCAATGAT+TGG + chr5_4:56101764-56101783 Msa0858570:intron 25.0%
!! TACTTTTAATGGTTTTCACA+TGG + chr5_4:56101867-56101886 Msa0858570:intron 25.0%
!! ACTTTTAATGGTTTTCACAT+GGG + chr5_4:56101868-56101887 Msa0858570:intron 25.0%
! TAATCACTAAGATAATGAAG+AGG + chr5_4:56102093-56102112 Msa0858570:intron 25.0%
! ATGATTACAAGTATATAAGG+CGG + chr5_4:56102225-56102244 Msa0858570:intron 25.0%
! TCAACTATAGCTTCAAATTA+TGG - chr5_4:56102518-56102537 None:intergenic 25.0%
!! GGATTTTATGCTTTCATATT+TGG + chr5_4:56102590-56102609 Msa0858570:intron 25.0%
!! ATTTTCTCTATTCTCCTATA+AGG + chr5_4:56102707-56102726 Msa0858570:intron 25.0%
! AATTACTTTCCATACCTATA+TGG - chr5_4:56102816-56102835 None:intergenic 25.0%
! ATACAACTCACAAGTATAAT+AGG + chr5_4:56102985-56103004 Msa0858570:intron 25.0%
!!! ATGTTGTTATTTTGTGATTG+AGG + chr5_4:56103056-56103075 Msa0858570:intron 25.0%
! GTTATTATTGAAAACTACCA+TGG + chr5_4:56103482-56103501 Msa0858570:intron 25.0%
! TATATATTGAAAGCTTACCA+TGG - chr5_4:56103502-56103521 None:intergenic 25.0%
! ACATTAAGATTATCATAGCT+AGG - chr5_4:56103675-56103694 None:intergenic 25.0%
!! TTTTGCATCAAACTTACTAT+AGG + chr5_4:56103772-56103791 Msa0858570:intron 25.0%
! TGTTATTATGAACGTCATTA+TGG + chr5_4:56103807-56103826 Msa0858570:intron 25.0%
!!! TAATAGTTGGATTAGAGTTT+TGG + chr5_4:56104055-56104074 Msa0858570:intron 25.0%
!!! AATAGTTGGATTAGAGTTTT+GGG + chr5_4:56104056-56104075 Msa0858570:intron 25.0%
!!! ATTTGTTGCTGTTATTTTGT+AGG + chr5_4:56104316-56104335 Msa0858570:intron 25.0%
!!! CACCTGTTTTTTATAAAAAC+AGG + chr5_4:56104470-56104489 Msa0858570:intron 25.0%
! TTTCATACCTGTAAAAAAAC+CGG + chr5_4:56104506-56104525 Msa0858570:intron 25.0%
!! GTATGTTTGAAATTCAAAAC+CGG - chr5_4:56104528-56104547 None:intergenic 25.0%
! TTGAAAATGGGTAGAAATTA+GGG - chr5_4:56104816-56104835 None:intergenic 25.0%
! ATTGAAAATGGGTAGAAATT+AGG - chr5_4:56104817-56104836 None:intergenic 25.0%
!!! CACGATTTTGGTTTATAAAT+TGG - chr5_4:56105296-56105315 None:intergenic 25.0%
! TCAAACTTTATCACACTAAA+TGG + chr5_4:56105403-56105422 Msa0858570:intron 25.0%
! CAAACTTTATCACACTAAAT+GGG + chr5_4:56105404-56105423 Msa0858570:intron 25.0%
! AAAGTTCTATCTATAAACCT+TGG + chr5_4:56105614-56105633 Msa0858570:CDS 25.0%
! TAAAGGTGATAATTGGATTA+CGG + chr5_4:56105817-56105836 Msa0858570:CDS 25.0%
!!! TTGTTATTCGTCAGATTTTT+TGG + chr5_4:56106033-56106052 Msa0858570:intron 25.0%
! AATGAGATGTATCTTTCAAA+AGG - chr5_4:56106069-56106088 None:intergenic 25.0%
! TTACAGTCACAAATTAACTT+AGG - chr5_4:56106409-56106428 None:intergenic 25.0%
! ATTTATTGGTCAACATACAT+AGG - chr5_4:56106459-56106478 None:intergenic 25.0%
! AGTATCTTGCTTTCATTTAT+TGG - chr5_4:56106473-56106492 None:intergenic 25.0%
! ACGAAAGTTTAGTCATTTAT+GGG - chr5_4:56106747-56106766 None:intergenic 25.0%
! TACGAAAGTTTAGTCATTTA+TGG - chr5_4:56106748-56106767 None:intergenic 25.0%
! ATCATTCATACTTATATGGA+AGG - chr5_4:56106888-56106907 None:intergenic 25.0%
!! GAGTTTTACAAAATCATAGT+AGG - chr5_4:56107387-56107406 None:intergenic 25.0%
! TAATAATATCAACTAGAAGG+AGG - chr5_4:56107450-56107469 None:intergenic 25.0%
!! CTTAAATGTTGTTGTTAGAT+AGG + chr5_4:56107476-56107495 Msa0858570:three_prime_UTR 25.0%
! TATGATTTGATGTAATGCTT+AGG + chr5_4:56107713-56107732 Msa0858570:three_prime_UTR 25.0%
! TCAATGTACATGAGTATTTA+TGG + chr5_4:56107748-56107767 Msa0858570:three_prime_UTR 25.0%
AGTGCTCTAATATAAATGTG+TGG - chr5_4:56099313-56099332 None:intergenic 30.0%
AAAGATTGAACTGGGATTAT+TGG - chr5_4:56099407-56099426 None:intergenic 30.0%
TTTCGGATAAAGATTGAACT+GGG - chr5_4:56099415-56099434 None:intergenic 30.0%
GATTGAATCTATGCAACTTT+CGG - chr5_4:56099432-56099451 None:intergenic 30.0%
!! AACCTCTAAGGTCAATTATT+GGG - chr5_4:56099526-56099545 None:intergenic 30.0%
!! AAACCTCTAAGGTCAATTAT+TGG - chr5_4:56099527-56099546 None:intergenic 30.0%
TAGTACTATGTAAACCTCTA+AGG - chr5_4:56099538-56099557 None:intergenic 30.0%
TAGCTAAATCCATCAAATCA+TGG - chr5_4:56099649-56099668 None:intergenic 30.0%
!! TGATTTGATGGATTTAGCTA+AGG + chr5_4:56099649-56099668 Msa0858570:CDS 30.0%
!!! TCAATTTTTTCACTTGCCTA+TGG + chr5_4:56099682-56099701 Msa0858570:CDS 30.0%
AACTCACCAAAAACTTATGA+AGG + chr5_4:56099725-56099744 Msa0858570:CDS 30.0%
ACTCACCAAAAACTTATGAA+GGG + chr5_4:56099726-56099745 Msa0858570:CDS 30.0%
TTATCTTCCTTTGTCTTTGA+AGG + chr5_4:56099814-56099833 Msa0858570:CDS 30.0%
!! TCTAAATCTGTTGTTGTTTG+TGG - chr5_4:56100481-56100500 None:intergenic 30.0%
GGTGTGAAATTTAAATAAGG+TGG + chr5_4:56100605-56100624 Msa0858570:intron 30.0%
CCCCCTTTATTCTTAAAATT+AGG - chr5_4:56100681-56100700 None:intergenic 30.0%
ATTGAAAAGTTGAAGGTCAA+GGG - chr5_4:56100835-56100854 None:intergenic 30.0%
! TGATATTTAGGAGCATAAGT+AGG - chr5_4:56100878-56100897 None:intergenic 30.0%
TCAGGTTTGCAATGATATTT+AGG - chr5_4:56100890-56100909 None:intergenic 30.0%
!!! CACCCTTTTTTCTTAAAATC+AGG - chr5_4:56100908-56100927 None:intergenic 30.0%
AAAGAAAAATATGTGTGTCG+AGG - chr5_4:56101076-56101095 None:intergenic 30.0%
! TTTGATGATTGAATCGATGA+GGG - chr5_4:56101218-56101237 None:intergenic 30.0%
! TGAATTTGAAACGCTAGTTT+GGG + chr5_4:56101249-56101268 Msa0858570:intron 30.0%
CAAGACCTAGAAAATAAACA+AGG - chr5_4:56101565-56101584 None:intergenic 30.0%
AACAACAATAAAACACCAAG+TGG - chr5_4:56101621-56101640 None:intergenic 30.0%
! TGGATTTTGAATTGCTTTCT+TGG + chr5_4:56101685-56101704 Msa0858570:intron 30.0%
! GGATTTTGAATTGCTTTCTT+GGG + chr5_4:56101686-56101705 Msa0858570:intron 30.0%
GGGTTGTATTGTGAATTAAA+TGG + chr5_4:56101706-56101725 Msa0858570:intron 30.0%
! TGTGAATTAAATGGGTTTAC+AGG + chr5_4:56101715-56101734 Msa0858570:intron 30.0%
TAGCTAAAGCCTAAACTTAA+TGG + chr5_4:56102183-56102202 Msa0858570:intron 30.0%
AGCTAAAGCCTAAACTTAAT+GGG + chr5_4:56102184-56102203 Msa0858570:intron 30.0%
TCACTGTTGACAATTAAATC+AGG - chr5_4:56102360-56102379 None:intergenic 30.0%
GATTTAATTGTCAACAGTGA+TGG + chr5_4:56102360-56102379 Msa0858570:intron 30.0%
AAAAAATGGCTTGATAAGTG+TGG + chr5_4:56102420-56102439 Msa0858570:intron 30.0%
! ATCGTTGATTGTTCTAGTTA+TGG + chr5_4:56102622-56102641 Msa0858570:intron 30.0%
! TCGTTGATTGTTCTAGTTAT+GGG + chr5_4:56102623-56102642 Msa0858570:intron 30.0%
AGAAACAAACCATATAGGTA+TGG + chr5_4:56102804-56102823 Msa0858570:intron 30.0%
TAATTTCTTTAAGCTGCTTG+TGG + chr5_4:56102831-56102850 Msa0858570:intron 30.0%
ATAATAGGTGTGTATCTGAT+TGG + chr5_4:56103000-56103019 Msa0858570:intron 30.0%
CTCAATGATGCAACATATAA+CGG - chr5_4:56103107-56103126 None:intergenic 30.0%
! GCAGTATGTTTTCATTATCA+GGG + chr5_4:56103127-56103146 Msa0858570:intron 30.0%
TGAAGATAGAAGACTTTGAA+TGG + chr5_4:56103155-56103174 Msa0858570:intron 30.0%
CTAGTTAACATACCAATATC+AGG - chr5_4:56103204-56103223 None:intergenic 30.0%
ATTGGTATGTTAACTAGACA+TGG + chr5_4:56103207-56103226 Msa0858570:intron 30.0%
TCTGATTGAAAGTCTTTCTA+CGG + chr5_4:56103316-56103335 Msa0858570:intron 30.0%
! TGAGCTTGTAAAATTGGTTT+GGG + chr5_4:56103583-56103602 Msa0858570:intron 30.0%
TTAATGTTGTGACTATCAAG+TGG + chr5_4:56103688-56103707 Msa0858570:intron 30.0%
! TTCTAAAAGCCAAAACAAAG+TGG + chr5_4:56103741-56103760 Msa0858570:intron 30.0%
!! ATAGTTGGATTAGAGTTTTG+GGG + chr5_4:56104057-56104076 Msa0858570:intron 30.0%
!! AACCTGTTTTATTGTAGAAC+AGG - chr5_4:56104432-56104451 None:intergenic 30.0%
!!! TTCAAAACCGGTTTTTTTAC+AGG - chr5_4:56104516-56104535 None:intergenic 30.0%
!!! TTAAGACCTGTTTTTGAACA+GGG - chr5_4:56104569-56104588 None:intergenic 30.0%
!!! TTTAAGACCTGTTTTTGAAC+AGG - chr5_4:56104570-56104589 None:intergenic 30.0%
AAGCTTCAATATGTGAATCT+TGG - chr5_4:56105078-56105097 None:intergenic 30.0%
! ACCAAATGTGGAAACTTTTA+GGG - chr5_4:56105142-56105161 None:intergenic 30.0%
! AACCAAATGTGGAAACTTTT+AGG - chr5_4:56105143-56105162 None:intergenic 30.0%
ACCAAACTTACACAACAAAT+TGG + chr5_4:56105175-56105194 Msa0858570:intron 30.0%
!! ACCAATTTGTTGTGTAAGTT+TGG - chr5_4:56105179-56105198 None:intergenic 30.0%
GTTTGTTTCGACAAAAATTG+TGG - chr5_4:56105272-56105291 None:intergenic 30.0%
TATAAACCAAAATCGTGTCA+CGG + chr5_4:56105299-56105318 Msa0858570:intron 30.0%
TGATGAATATGGGATAGAAT+TGG + chr5_4:56105568-56105587 Msa0858570:CDS 30.0%
TCTATCTATAAACCTTGGAT+TGG + chr5_4:56105619-56105638 Msa0858570:CDS 30.0%
! TTTCTTCAAAATGCTTTTGG+AGG + chr5_4:56105650-56105669 Msa0858570:CDS 30.0%
AAGTTCGTAAAGGTGATAAT+TGG + chr5_4:56105810-56105829 Msa0858570:CDS 30.0%
ACAATAAATGCATTACGAAC+AGG - chr5_4:56105848-56105867 None:intergenic 30.0%
! CAATATTGGTGATCAAATTC+AGG + chr5_4:56105868-56105887 Msa0858570:CDS 30.0%
!!! TATTCGTCAGATTTTTTGGA+TGG + chr5_4:56106037-56106056 Msa0858570:intron 30.0%
ACACAAAGTGGATAAACATT+TGG + chr5_4:56106290-56106309 Msa0858570:intron 30.0%
TACATAGGATAAGTTGTGAT+TGG - chr5_4:56106444-56106463 None:intergenic 30.0%
TGTATGATTAGTATCACGAT+GGG + chr5_4:56106625-56106644 Msa0858570:intron 30.0%
! TATCATTGATGATACTTGAG+AGG + chr5_4:56106840-56106859 Msa0858570:intron 30.0%
!!! TCAATTGGAATGTCACTTTT+GGG - chr5_4:56107083-56107102 None:intergenic 30.0%
CTATGACCTTTGATGAATAT+AGG + chr5_4:56107150-56107169 Msa0858570:CDS 30.0%
GAAAAGCCTATATTCATCAA+AGG - chr5_4:56107159-56107178 None:intergenic 30.0%
! ATAGGCTTTTCATTAGAATG+AGG + chr5_4:56107168-56107187 Msa0858570:CDS 30.0%
! TAGGCTTTTCATTAGAATGA+GGG + chr5_4:56107169-56107188 Msa0858570:CDS 30.0%
AAGATTGCATGTGAAATTGA+TGG + chr5_4:56107554-56107573 Msa0858570:three_prime_UTR 30.0%
CTTTCGGATAAAGATTGAAC+TGG - chr5_4:56099416-56099435 None:intergenic 35.0%
GGGGTTTGATATATCTTTGA+GGG - chr5_4:56099454-56099473 None:intergenic 35.0%
AGGGGTTTGATATATCTTTG+AGG - chr5_4:56099455-56099474 None:intergenic 35.0%
ATCCCAATAATTGACCTTAG+AGG + chr5_4:56099521-56099540 Msa0858570:CDS 35.0%
!!! AGGTTGAAGCTTTTTCATGT+GGG - chr5_4:56099562-56099581 None:intergenic 35.0%
!!! AAGGTTGAAGCTTTTTCATG+TGG - chr5_4:56099563-56099582 None:intergenic 35.0%
TGGATTTAGCTAAGGAAACT+TGG + chr5_4:56099657-56099676 Msa0858570:CDS 35.0%
! CCATACCCTTCATAAGTTTT+TGG - chr5_4:56099734-56099753 None:intergenic 35.0%
CCAAAAACTTATGAAGGGTA+TGG + chr5_4:56099731-56099750 Msa0858570:CDS 35.0%
!! AGTAGACTTGGTGTTAAGAA+AGG + chr5_4:56099755-56099774 Msa0858570:CDS 35.0%
!! AGAAAGGTGCTATTCTTGAT+TGG + chr5_4:56099771-56099790 Msa0858570:CDS 35.0%
TTGTAGTCCTTCAAAGACAA+AGG - chr5_4:56099824-56099843 None:intergenic 35.0%
! CTTTGAAGGACTACAACAAA+TGG + chr5_4:56099828-56099847 Msa0858570:CDS 35.0%
AAGTACTTAAACCTGCAAGA+GGG - chr5_4:56099866-56099885 None:intergenic 35.0%
TAAGTACTTAAACCTGCAAG+AGG - chr5_4:56099867-56099886 None:intergenic 35.0%
TTTGTAGCTCGTTCATTAAG+AGG + chr5_4:56100112-56100131 Msa0858570:intron 35.0%
GATTGAAAAGTTGAAGGTCA+AGG - chr5_4:56100836-56100855 None:intergenic 35.0%
!!! TTAGTTCATGGGTTTTGAGA+AGG - chr5_4:56101099-56101118 None:intergenic 35.0%
TGAATCAGAAACCGAATTAG+AGG - chr5_4:56101134-56101153 None:intergenic 35.0%
AGATGATGACTAAATCGATG+AGG - chr5_4:56101159-56101178 None:intergenic 35.0%
! GTTTGATGATTGAATCGATG+AGG - chr5_4:56101219-56101238 None:intergenic 35.0%
GCGTTTCAAATTCACGATTT+AGG - chr5_4:56101243-56101262 None:intergenic 35.0%
! GTGAATTTGAAACGCTAGTT+TGG + chr5_4:56101248-56101267 Msa0858570:intron 35.0%
! GAATTTGAAACGCTAGTTTG+GGG + chr5_4:56101250-56101269 Msa0858570:intron 35.0%
! AATTTGAAACGCTAGTTTGG+GGG + chr5_4:56101251-56101270 Msa0858570:intron 35.0%
TAGTAGAGATAGCAGTTGAA+GGG - chr5_4:56101482-56101501 None:intergenic 35.0%
ATAGTAGAGATAGCAGTTGA+AGG - chr5_4:56101483-56101502 None:intergenic 35.0%
CCAAGTGGCTTAAGAATTAA+GGG - chr5_4:56101606-56101625 None:intergenic 35.0%
ACCAAGTGGCTTAAGAATTA+AGG - chr5_4:56101607-56101626 None:intergenic 35.0%
ATCAGCTAGAATCTTACACT+TGG + chr5_4:56101665-56101684 Msa0858570:intron 35.0%
! TTTAATGGTTTTCACATGGG+AGG + chr5_4:56101871-56101890 Msa0858570:intron 35.0%
! TTAATGGTTTTCACATGGGA+GGG + chr5_4:56101872-56101891 Msa0858570:intron 35.0%
TCACTAAGATAATGAAGAGG+TGG + chr5_4:56102096-56102115 Msa0858570:intron 35.0%
CTTACTTGCCCATTAAGTTT+AGG - chr5_4:56102195-56102214 None:intergenic 35.0%
TTAATTGTCAACAGTGATGG+TGG + chr5_4:56102363-56102382 Msa0858570:intron 35.0%
! GCTTTATTGTTGCAAGAGAT+TGG + chr5_4:56102663-56102682 Msa0858570:intron 35.0%
CATGAAAGACTAGACCTTAT+AGG - chr5_4:56102724-56102743 None:intergenic 35.0%
TTGTGTAGAAGAAGTTGAGT+CGG + chr5_4:56102780-56102799 Msa0858570:intron 35.0%
! TTGTTTGGAACTTTGAGTGA+TGG + chr5_4:56102912-56102931 Msa0858570:intron 35.0%
! TGTTTGGAACTTTGAGTGAT+GGG + chr5_4:56102913-56102932 Msa0858570:intron 35.0%
CATATGTGTCATCAAGTGTT+GGG - chr5_4:56102965-56102984 None:intergenic 35.0%
TCATATGTGTCATCAAGTGT+TGG - chr5_4:56102966-56102985 None:intergenic 35.0%
CGTTATATGTTGCATCATTG+AGG + chr5_4:56103105-56103124 Msa0858570:intron 35.0%
! GGCAGTATGTTTTCATTATC+AGG + chr5_4:56103126-56103145 Msa0858570:intron 35.0%
GTTAACATACCAATATCAGG+TGG - chr5_4:56103201-56103220 None:intergenic 35.0%
CTGATTGAAAGTCTTTCTAC+GGG + chr5_4:56103317-56103336 Msa0858570:intron 35.0%
TCCACTCAAGTTCAAGAAAT+TGG + chr5_4:56103423-56103442 Msa0858570:intron 35.0%
!! AAATTGGCACCATTGACTTA+TGG + chr5_4:56103439-56103458 Msa0858570:intron 35.0%
TTGCACTGAGCTTGTAAAAT+TGG + chr5_4:56103577-56103596 Msa0858570:intron 35.0%
CTGAGCTTGTAAAATTGGTT+TGG + chr5_4:56103582-56103601 Msa0858570:intron 35.0%
!! GAGCTTGTAAAATTGGTTTG+GGG + chr5_4:56103584-56103603 Msa0858570:intron 35.0%
!! AGCTTCTTTCCACTTTGTTT+TGG - chr5_4:56103753-56103772 None:intergenic 35.0%
ATTGTGACCTCACTAATAGT+TGG + chr5_4:56104042-56104061 Msa0858570:intron 35.0%
CTCTAATCCAACTATTAGTG+AGG - chr5_4:56104052-56104071 None:intergenic 35.0%
! ATGGTTGATGTGTTTCTTGA+TGG - chr5_4:56104126-56104145 None:intergenic 35.0%
TCAAGAAACACATCAACCAT+AGG + chr5_4:56104126-56104145 Msa0858570:intron 35.0%
CACCTGTTCTACAATAAAAC+AGG + chr5_4:56104427-56104446 Msa0858570:intron 35.0%
TATAACCCCTGTTCAAAAAC+AGG + chr5_4:56104560-56104579 Msa0858570:intron 35.0%
!!! TAAGACCTGTTTTTGAACAG+GGG - chr5_4:56104568-56104587 None:intergenic 35.0%
CTTTGCACTAGTACAAATCA+GGG - chr5_4:56104616-56104635 None:intergenic 35.0%
TCTTTGCACTAGTACAAATC+AGG - chr5_4:56104617-56104636 None:intergenic 35.0%
TCCAACAATGATCTACTCTA+GGG + chr5_4:56104695-56104714 Msa0858570:intron 35.0%
GTAGAAATTAGGGTTGTTCT+TGG - chr5_4:56104806-56104825 None:intergenic 35.0%
ATCATTCAGTCTCTTGTTCA+CGG - chr5_4:56104846-56104865 None:intergenic 35.0%
!! TAGGGTTGATTCTCTTTTGA+GGG - chr5_4:56104906-56104925 None:intergenic 35.0%
ACTAAATGTTGAGGGTCTTT+GGG - chr5_4:56105110-56105129 None:intergenic 35.0%
TACTAAATGTTGAGGGTCTT+TGG - chr5_4:56105111-56105130 None:intergenic 35.0%
ACCCTAAAAGTTTCCACATT+TGG + chr5_4:56105138-56105157 Msa0858570:intron 35.0%
AATGTCATGGAAACCAAATG+TGG - chr5_4:56105154-56105173 None:intergenic 35.0%
! TGTAAGTTTGGTGAATGTCA+TGG - chr5_4:56105167-56105186 None:intergenic 35.0%
CTTACACAACAAATTGGTCA+AGG + chr5_4:56105181-56105200 Msa0858570:intron 35.0%
AAATCGTGACACAATTTGAC+AGG - chr5_4:56105237-56105256 None:intergenic 35.0%
ACTTTGTGCCTATTGAATGT+AGG + chr5_4:56105537-56105556 Msa0858570:intron 35.0%
CTTTGTGCCTATTGAATGTA+GGG + chr5_4:56105538-56105557 Msa0858570:intron 35.0%
AATTGGTGAAGTTATGTGAG+AGG + chr5_4:56105585-56105604 Msa0858570:CDS 35.0%
GAAAATTCTCTTCCAATCCA+AGG - chr5_4:56105634-56105653 None:intergenic 35.0%
! AAGATATTGGTGCTTGCATA+AGG + chr5_4:56105675-56105694 Msa0858570:CDS 35.0%
! AGATATTGGTGCTTGCATAA+GGG + chr5_4:56105676-56105695 Msa0858570:CDS 35.0%
GATAAACCAAGAGTCAACAA+TGG - chr5_4:56105728-56105747 None:intergenic 35.0%
TTATCATCACATTCAGATCC+AGG + chr5_4:56105743-56105762 Msa0858570:CDS 35.0%
TTACCAGATGATCAAGTACA+TGG + chr5_4:56105782-56105801 Msa0858570:CDS 35.0%
!!! TCAGATTTTTTGGATGGTTG+TGG + chr5_4:56106043-56106062 Msa0858570:intron 35.0%
! ACTGTTCTCATGTCACTTAT+AGG - chr5_4:56106119-56106138 None:intergenic 35.0%
! TTAGGAAAGTAAAAGCACGA+TGG - chr5_4:56106391-56106410 None:intergenic 35.0%
CGTGATACTAATCATACACT+TGG - chr5_4:56106623-56106642 None:intergenic 35.0%
GTGTATGATTAGTATCACGA+TGG + chr5_4:56106624-56106643 Msa0858570:intron 35.0%
TTCTAAGCAATGCAATCTAC+AGG + chr5_4:56106991-56107010 Msa0858570:CDS 35.0%
!!! CTCAATTGGAATGTCACTTT+TGG - chr5_4:56107084-56107103 None:intergenic 35.0%
ATTCATCAAAGGTCATAGCA+GGG - chr5_4:56107148-56107167 None:intergenic 35.0%
TATTCATCAAAGGTCATAGC+AGG - chr5_4:56107149-56107168 None:intergenic 35.0%
! AGGCTTTTCATTAGAATGAG+GGG + chr5_4:56107170-56107189 Msa0858570:CDS 35.0%
! TCAACTTGAGATTTTCCACA+TGG - chr5_4:56107197-56107216 None:intergenic 35.0%
!! TGTTTATTTCTGTGTCAGTG+AGG + chr5_4:56107291-56107310 Msa0858570:three_prime_UTR 35.0%
CGGCTTGTGATTAAATGTTA+AGG - chr5_4:56107418-56107437 None:intergenic 35.0%
CTAGAAGGAGGTTATATACA+CGG - chr5_4:56107438-56107457 None:intergenic 35.0%
ATCAATTAAGCCAGAAAGTG+AGG + chr5_4:56107526-56107545 Msa0858570:three_prime_UTR 35.0%
TCAATTAAGCCAGAAAGTGA+GGG + chr5_4:56107527-56107546 Msa0858570:three_prime_UTR 35.0%
! CTCTTCCTGATTGGTAATTT+GGG + chr5_4:56107591-56107610 Msa0858570:three_prime_UTR 35.0%
GTTAGGGAAAGAGAAAAGGA+GGG - chr5_4:56099230-56099249 None:intergenic 40.0%
AGTTAGGGAAAGAGAAAAGG+AGG - chr5_4:56099231-56099250 None:intergenic 40.0%
GTGAGTTAGGGAAAGAGAAA+AGG - chr5_4:56099234-56099253 None:intergenic 40.0%
AAATGATCAGCCCACAAGAT+TGG + chr5_4:56099375-56099394 Msa0858570:exon 40.0%
!! TGAACTGGGATTATTGGTTC+AGG - chr5_4:56099401-56099420 None:intergenic 40.0%
! TATTGATGGACGGTCACTAA+GGG - chr5_4:56099474-56099493 None:intergenic 40.0%
! TTATTGATGGACGGTCACTA+AGG - chr5_4:56099475-56099494 None:intergenic 40.0%
AACCTTCAAGCAAATCTCTG+AGG + chr5_4:56099577-56099596 Msa0858570:CDS 40.0%
TCAAATCATGGCTAACACCA+TGG - chr5_4:56099637-56099656 None:intergenic 40.0%
! TGGTGTTAGCCATGATTTGA+TGG + chr5_4:56099637-56099656 Msa0858570:CDS 40.0%
TAGCTCGTTCATTAAGAGGT+CGG + chr5_4:56100116-56100135 Msa0858570:intron 40.0%
TTCATTAAGAGGTCGGTAGT+TGG + chr5_4:56100123-56100142 Msa0858570:intron 40.0%
TGTCAATTCTGCACTAGTGT+TGG - chr5_4:56100547-56100566 None:intergenic 40.0%
! AGGAGCATAAGTAGGCAAAT+TGG - chr5_4:56100870-56100889 None:intergenic 40.0%
AAAAATATGTGTGTCGAGGC+TGG - chr5_4:56101072-56101091 None:intergenic 40.0%
! GATTGAATCGATGAGGGTTT+TGG - chr5_4:56101212-56101231 None:intergenic 40.0%
TTGAGGGATGTTAACTAGGT+CGG - chr5_4:56101392-56101411 None:intergenic 40.0%
TTGAAGGGGAAATTGATGTG+TGG - chr5_4:56101467-56101486 None:intergenic 40.0%
AGTAGAGATAGCAGTTGAAG+GGG - chr5_4:56101481-56101500 None:intergenic 40.0%
TATGCTCTGATGACACTTTG+AGG + chr5_4:56101500-56101519 Msa0858570:intron 40.0%
CCCTTAATTCTTAAGCCACT+TGG + chr5_4:56101603-56101622 Msa0858570:intron 40.0%
TTGTGACAGTGTGAGTTAGT+GGG - chr5_4:56101945-56101964 None:intergenic 40.0%
TTTGTGACAGTGTGAGTTAG+TGG - chr5_4:56101946-56101965 None:intergenic 40.0%
GTCACAAAACACAAACAGAG+AGG + chr5_4:56101958-56101977 Msa0858570:intron 40.0%
! ATACAAGGCACCCTTCATAT+AGG + chr5_4:56102042-56102061 Msa0858570:intron 40.0%
! GGAAAGCTAGCCTATATGAA+GGG - chr5_4:56102055-56102074 None:intergenic 40.0%
! AGGAAAGCTAGCCTATATGA+AGG - chr5_4:56102056-56102075 None:intergenic 40.0%
! GTGCTGCTAATTGATCAAGA+GGG + chr5_4:56102247-56102266 Msa0858570:intron 40.0%
!! TCAACAGTGATGGTGGAAAA+CGG + chr5_4:56102370-56102389 Msa0858570:intron 40.0%
! AAAACGGTTGTTGTTGCGTT+TGG + chr5_4:56102386-56102405 Msa0858570:intron 40.0%
TGGAAGTGAGGGACAAAAAA+TGG + chr5_4:56102406-56102425 Msa0858570:intron 40.0%
AAATGGCTTGATAAGTGTGG+TGG + chr5_4:56102423-56102442 Msa0858570:intron 40.0%
!!! GATTGGTGCTAGGATTTTGA+TGG + chr5_4:56102680-56102699 Msa0858570:intron 40.0%
TGTGTAGAAGAAGTTGAGTC+GGG + chr5_4:56102781-56102800 Msa0858570:intron 40.0%
TCGGGAGAAACAAACCATAT+AGG + chr5_4:56102799-56102818 Msa0858570:intron 40.0%
! TGTGTATCTGATTGGTCATG+CGG + chr5_4:56103008-56103027 Msa0858570:intron 40.0%
GATGCAACATATAACGGCTT+GGG - chr5_4:56103101-56103120 None:intergenic 40.0%
TGATGCAACATATAACGGCT+TGG - chr5_4:56103102-56103121 None:intergenic 40.0%
GATTACCTTCCACCTGATAT+TGG + chr5_4:56103189-56103208 Msa0858570:intron 40.0%
ACATACCAATATCAGGTGGA+AGG - chr5_4:56103197-56103216 None:intergenic 40.0%
GCCAATTTCTTGAACTTGAG+TGG - chr5_4:56103427-56103446 None:intergenic 40.0%
CCTTCAATGCCATAAGTCAA+TGG - chr5_4:56103451-56103470 None:intergenic 40.0%
!! CCATTGACTTATGGCATTGA+AGG + chr5_4:56103448-56103467 Msa0858570:intron 40.0%
CTCAGTGCAACAATCAACAT+TGG - chr5_4:56103567-56103586 None:intergenic 40.0%
AGGTTATGTAGATCACACCA+TGG + chr5_4:56104007-56104026 Msa0858570:intron 40.0%
ACAATCACAACTCTAGTCCA+TGG - chr5_4:56104027-56104046 None:intergenic 40.0%
CAAAGTTGTTGCCAAGATGA+AGG + chr5_4:56104090-56104109 Msa0858570:intron 40.0%
!! AAGTATTGGGTGATAGCCTA+TGG - chr5_4:56104145-56104164 None:intergenic 40.0%
TGAACAGGGGTTATAACACT+AGG - chr5_4:56104555-56104574 None:intergenic 40.0%
ACCAAGAAATGTATCCAGCT+CGG + chr5_4:56104672-56104691 Msa0858570:intron 40.0%
GTCCAACAATGATCTACTCT+AGG + chr5_4:56104694-56104713 Msa0858570:intron 40.0%
CCAACAATGATCTACTCTAG+GGG + chr5_4:56104696-56104715 Msa0858570:intron 40.0%
CACGGGAAGAGATTGAAAAT+GGG - chr5_4:56104828-56104847 None:intergenic 40.0%
TCACGGGAAGAGATTGAAAA+TGG - chr5_4:56104829-56104848 None:intergenic 40.0%
TCATTCAGTCTCTTGTTCAC+GGG - chr5_4:56104845-56104864 None:intergenic 40.0%
TGAATGATTTCACTCACCCA+AGG + chr5_4:56104858-56104877 Msa0858570:intron 40.0%
!! TGAGGGTAGATTCTAGAGTT+GGG - chr5_4:56104889-56104908 None:intergenic 40.0%
!! TTGAGGGTAGATTCTAGAGT+TGG - chr5_4:56104890-56104909 None:intergenic 40.0%
!! CTAGGGTTGATTCTCTTTTG+AGG - chr5_4:56104907-56104926 None:intergenic 40.0%
GAAGATCCTCAGGAAATCAA+AGG - chr5_4:56104930-56104949 None:intergenic 40.0%
! TTCCTGAGGATCTTCTCTTT+TGG + chr5_4:56104935-56104954 Msa0858570:intron 40.0%
AACCAAAAGAGAAGATCCTC+AGG - chr5_4:56104940-56104959 None:intergenic 40.0%
AGAGTCTCTGTGATCATCTT+AGG - chr5_4:56104975-56104994 None:intergenic 40.0%
AACCTAAAGAGGAGACTCTT+GGG - chr5_4:56105053-56105072 None:intergenic 40.0%
GAATCTTGGAGAACCTAAAG+AGG - chr5_4:56105064-56105083 None:intergenic 40.0%
GACAAAAATTGTGGCACGAA+GGG - chr5_4:56105263-56105282 None:intergenic 40.0%
! GAAAAACCGTGACACGATTT+TGG - chr5_4:56105308-56105327 None:intergenic 40.0%
GTATTTCAGCAAAATCGCCA+TGG - chr5_4:56105340-56105359 None:intergenic 40.0%
AACACCTCCCTACATTCAAT+AGG - chr5_4:56105548-56105567 None:intergenic 40.0%
!! AGGGAGGTGTTTGATGAATA+TGG + chr5_4:56105557-56105576 Msa0858570:intron 40.0%
!! GGGAGGTGTTTGATGAATAT+GGG + chr5_4:56105558-56105577 Msa0858570:intron 40.0%
!! GCTTTTGGAGGTGAAGATAT+TGG + chr5_4:56105662-56105681 Msa0858570:CDS 40.0%
AACAATGGCTGTGGACATTT+GGG - chr5_4:56105713-56105732 None:intergenic 40.0%
AACAAAAGAGTAATGCCACC+TGG - chr5_4:56105764-56105783 None:intergenic 40.0%
AGACCATGTACTTGATCATC+TGG - chr5_4:56105788-56105807 None:intergenic 40.0%
! CATGGTCTTCAAGTTCGTAA+AGG + chr5_4:56105800-56105819 Msa0858570:CDS 40.0%
TGATGCATGAATCTGTCACA+TGG + chr5_4:56105950-56105969 Msa0858570:intron 40.0%
TTCTTAACCCTGTAGCAATG+TGG - chr5_4:56106316-56106335 None:intergenic 40.0%
ACATTGCTACAGGGTTAAGA+AGG + chr5_4:56106315-56106334 Msa0858570:intron 40.0%
CTACAGGGTTAAGAAGGATA+GGG + chr5_4:56106321-56106340 Msa0858570:intron 40.0%
GGATAAGTTGTGATTGGTAG+AGG - chr5_4:56106438-56106457 None:intergenic 40.0%
!! GTCATGCAAAAGCATTGCAA+TGG + chr5_4:56106582-56106601 Msa0858570:intron 40.0%
GGGATTGTAGAAGAAAGCTA+AGG - chr5_4:56107063-56107082 None:intergenic 40.0%
!! AATTCCTTTGCTGGCTCAAT+TGG - chr5_4:56107098-56107117 None:intergenic 40.0%
AATTGAGCCAGCAAAGGAAT+TGG + chr5_4:56107097-56107116 Msa0858570:CDS 40.0%
AAAGGTCATAGCAGGGTAAA+GGG - chr5_4:56107141-56107160 None:intergenic 40.0%
TCCAAGATGATACGCATGTT+TGG + chr5_4:56107229-56107248 Msa0858570:exon 40.0%
TCCAAACATGCGTATCATCT+TGG - chr5_4:56107233-56107252 None:intergenic 40.0%
ATCTTTGTACCCTCACTTTC+TGG - chr5_4:56107539-56107558 None:intergenic 40.0%
GATGTTTACCTCTTCCTGAT+TGG + chr5_4:56107582-56107601 Msa0858570:three_prime_UTR 40.0%
CCAAATTACCAATCAGGAAG+AGG - chr5_4:56107593-56107612 None:intergenic 40.0%
! CCTCTTCCTGATTGGTAATT+TGG + chr5_4:56107590-56107609 Msa0858570:three_prime_UTR 40.0%
GACTACCCAAATTACCAATC+AGG - chr5_4:56107599-56107618 None:intergenic 40.0%
CCATATTACAAACATTGCCC+TGG - chr5_4:56107666-56107685 None:intergenic 40.0%
CCAGGGCAATGTTTGTAATA+TGG + chr5_4:56107663-56107682 Msa0858570:three_prime_UTR 40.0%
TTGGTTCAGGCCAATCTTGT+GGG - chr5_4:56099388-56099407 None:intergenic 45.0%
! ATTGGTTCAGGCCAATCTTG+TGG - chr5_4:56099389-56099408 None:intergenic 45.0%
! ATTGATGGACGGTCACTAAG+GGG - chr5_4:56099473-56099492 None:intergenic 45.0%
! AGCCTCAGAGATTTGCTTGA+AGG - chr5_4:56099582-56099601 None:intergenic 45.0%
!! TCTCTGAGGCTTGTAAAGAG+TGG + chr5_4:56099591-56099610 Msa0858570:CDS 45.0%
!! CTCTGAGGCTTGTAAAGAGT+GGG + chr5_4:56099592-56099611 Msa0858570:CDS 45.0%
! TCTGAGGCTTGTAAAGAGTG+GGG + chr5_4:56099593-56099612 Msa0858570:CDS 45.0%
! GAAGGGTATGGTAGTAGACT+TGG + chr5_4:56099743-56099762 Msa0858570:CDS 45.0%
TACTTAAACCTGCAAGAGGG+AGG - chr5_4:56099863-56099882 None:intergenic 45.0%
!! CTAGTGTTGGTTCGATTGAG+TGG - chr5_4:56100534-56100553 None:intergenic 45.0%
GGACTGAATTGAGGGTTTGA+CGG - chr5_4:56101366-56101385 None:intergenic 45.0%
GGGTTTGAGGGATGTTAACT+AGG - chr5_4:56101396-56101415 None:intergenic 45.0%
AGTGTGAATCGAGGGTTTGA+GGG - chr5_4:56101408-56101427 None:intergenic 45.0%
AAACCCTCGATTCACACTCT+CGG + chr5_4:56101410-56101429 Msa0858570:intron 45.0%
!! GGTGCTGCTAATTGATCAAG+AGG + chr5_4:56102246-56102265 Msa0858570:intron 45.0%
!!! AGGGTGCTGCTACTTTTCTT+TGG + chr5_4:56102266-56102285 Msa0858570:intron 45.0%
TGTTGTTGCGTTTGGAAGTG+AGG + chr5_4:56102394-56102413 Msa0858570:intron 45.0%
GTTGTTGCGTTTGGAAGTGA+GGG + chr5_4:56102395-56102414 Msa0858570:intron 45.0%
! TGTTGCAAGAGATTGGTGCT+AGG + chr5_4:56102670-56102689 Msa0858570:intron 45.0%
! GTGTATCTGATTGGTCATGC+GGG + chr5_4:56103009-56103028 Msa0858570:intron 45.0%
GAGGCAGTATGTTGCATGAT+TGG + chr5_4:56103075-56103094 Msa0858570:intron 45.0%
ACTTTGAATGGTCAGTGCAC+AGG + chr5_4:56103167-56103186 Msa0858570:intron 45.0%
ATCAAGTGGATGAAGCTCTG+TGG + chr5_4:56103702-56103721 Msa0858570:intron 45.0%
TCAAGTGGATGAAGCTCTGT+GGG + chr5_4:56103703-56103722 Msa0858570:intron 45.0%
CATCTTGGCAACAACTTTGC+TGG - chr5_4:56104089-56104108 None:intergenic 45.0%
GCAGTGTAAAGCCTTCATCT+TGG - chr5_4:56104104-56104123 None:intergenic 45.0%
ACCGAGCTGGATACATTTCT+TGG - chr5_4:56104676-56104695 None:intergenic 45.0%
CCCCTAGAGTAGATCATTGT+TGG - chr5_4:56104699-56104718 None:intergenic 45.0%
CTAGAGTTGGGAAACACCTT+GGG - chr5_4:56104877-56104896 None:intergenic 45.0%
! TCTAGAGTTGGGAAACACCT+TGG - chr5_4:56104878-56104897 None:intergenic 45.0%
CCTCAGGAAATCAAAGGCTA+GGG - chr5_4:56104924-56104943 None:intergenic 45.0%
TCCTCAGGAAATCAAAGGCT+AGG - chr5_4:56104925-56104944 None:intergenic 45.0%
!! CTTTTGGGGAGAGATTCATG+GGG - chr5_4:56105017-56105036 None:intergenic 45.0%
!! CCTTTTGGGGAGAGATTCAT+GGG - chr5_4:56105018-56105037 None:intergenic 45.0%
AAGAGGAGACTCTTGGGAAA+CGG - chr5_4:56105047-56105066 None:intergenic 45.0%
TTCCCAAGAGTCTCCTCTTT+AGG + chr5_4:56105048-56105067 Msa0858570:intron 45.0%
GAACCTAAAGAGGAGACTCT+TGG - chr5_4:56105054-56105073 None:intergenic 45.0%
CGACAAAAATTGTGGCACGA+AGG - chr5_4:56105264-56105283 None:intergenic 45.0%
! GGTTTTTCCAAATCGTGCCA+TGG + chr5_4:56105320-56105339 Msa0858570:intron 45.0%
AAAATCGCCATGGCACGATT+TGG - chr5_4:56105330-56105349 None:intergenic 45.0%
TGTGCCTATTGAATGTAGGG+AGG + chr5_4:56105541-56105560 Msa0858570:intron 45.0%
CAACAATGGCTGTGGACATT+TGG - chr5_4:56105714-56105733 None:intergenic 45.0%
TCATCACATTCAGATCCAGG+TGG + chr5_4:56105746-56105765 Msa0858570:CDS 45.0%
TGCATGAATCTGTCACATGG+AGG + chr5_4:56105953-56105972 Msa0858570:intron 45.0%
ACATTTGGCCACATTGCTAC+AGG + chr5_4:56106305-56106324 Msa0858570:intron 45.0%
CATTTGGCCACATTGCTACA+GGG + chr5_4:56106306-56106325 Msa0858570:intron 45.0%
GCTACAGGGTTAAGAAGGAT+AGG + chr5_4:56106320-56106339 Msa0858570:intron 45.0%
CATTCCAATTGAGCCAGCAA+AGG + chr5_4:56107091-56107110 Msa0858570:CDS 45.0%
GGCTTTACCAATTCCTTTGC+TGG - chr5_4:56107107-56107126 None:intergenic 45.0%
CAAAGGTCATAGCAGGGTAA+AGG - chr5_4:56107142-56107161 None:intergenic 45.0%
ATTAGAATGAGGGGTCCATG+TGG + chr5_4:56107179-56107198 Msa0858570:CDS 45.0%
GATACGCATGTTTGGATCAG+CGG + chr5_4:56107237-56107256 Msa0858570:exon 45.0%
! CAATCATCGGTTGAGAAGTG+GGG - chr5_4:56107621-56107640 None:intergenic 45.0%
! CCAATCATCGGTTGAGAAGT+GGG - chr5_4:56107622-56107641 None:intergenic 45.0%
CCACTTCTCAACCGATGATT+GGG + chr5_4:56107620-56107639 Msa0858570:three_prime_UTR 45.0%
CACTTCTCAACCGATGATTG+GGG + chr5_4:56107621-56107640 Msa0858570:three_prime_UTR 45.0%
ATGCATGCACCATGATTCCA+GGG + chr5_4:56107646-56107665 Msa0858570:three_prime_UTR 45.0%
CAAACATTGCCCTGGAATCA+TGG - chr5_4:56107658-56107677 None:intergenic 45.0%
!!! TATTTTTTAAAAAAAAACAT+AGG - chr5_4:56101002-56101021 None:intergenic 5.0%
GGAAAGAGAAAAGGAGGGTG+AGG - chr5_4:56099225-56099244 None:intergenic 50.0%
GTTGGTGTGCGTGTGAGTTA+GGG - chr5_4:56099246-56099265 None:intergenic 50.0%
! AGTTGGTGTGCGTGTGAGTT+AGG - chr5_4:56099247-56099266 None:intergenic 50.0%
GTCGGTGAGGACTGAATTGA+GGG - chr5_4:56101374-56101393 None:intergenic 50.0%
GGATGTTAACTAGGTCGGTG+AGG - chr5_4:56101387-56101406 None:intergenic 50.0%
GAGTGTGAATCGAGGGTTTG+AGG - chr5_4:56101409-56101428 None:intergenic 50.0%
! TCTCCGAGAGTGTGAATCGA+GGG - chr5_4:56101416-56101435 None:intergenic 50.0%
! TTCTCCGAGAGTGTGAATCG+AGG - chr5_4:56101417-56101436 None:intergenic 50.0%
GGGAAATTGATGTGTGGACG+TGG - chr5_4:56101461-56101480 None:intergenic 50.0%
GTCTTTCTACGGGCGTAGTA+TGG + chr5_4:56103327-56103346 Msa0858570:intron 50.0%
AGATCATTGTTGGACCGAGC+TGG - chr5_4:56104689-56104708 None:intergenic 50.0%
! CCCTAGCCTTTGATTTCCTG+AGG + chr5_4:56104921-56104940 Msa0858570:intron 50.0%
CCCATGAATCTCTCCCCAAA+AGG + chr5_4:56105015-56105034 Msa0858570:intron 50.0%
!! GCCTTTTGGGGAGAGATTCA+TGG - chr5_4:56105019-56105038 None:intergenic 50.0%
! GAAACGGGTGATGCCTTTTG+GGG - chr5_4:56105031-56105050 None:intergenic 50.0%
! GGAAACGGGTGATGCCTTTT+GGG - chr5_4:56105032-56105051 None:intergenic 50.0%
AGAGGAGACTCTTGGGAAAC+GGG - chr5_4:56105046-56105065 None:intergenic 50.0%
CCAAGAGTCAACAATGGCTG+TGG - chr5_4:56105722-56105741 None:intergenic 50.0%
!! CCACAGCCATTGTTGACTCT+TGG + chr5_4:56105719-56105738 Msa0858570:CDS 50.0%
GAGGCGACACATGATGAAGT+TGG + chr5_4:56105972-56105991 Msa0858570:intron 50.0%
CAGCATGCACACACACAAAG+TGG + chr5_4:56106278-56106297 Msa0858570:intron 50.0%
GGGTAAAGGGCAGGTTTATC+TGG - chr5_4:56107128-56107147 None:intergenic 50.0%
CCCACTTCTCAACCGATGAT+TGG + chr5_4:56107619-56107638 Msa0858570:three_prime_UTR 50.0%
! CCCAATCATCGGTTGAGAAG+TGG - chr5_4:56107623-56107642 None:intergenic 50.0%
GCATGCATCACCCCAATCAT+CGG - chr5_4:56107634-56107653 None:intergenic 50.0%
GATGCATGCACCATGATTCC+AGG + chr5_4:56107645-56107664 Msa0858570:three_prime_UTR 50.0%
GGAGGGTGAGGTGAGTTTGT+AGG - chr5_4:56099213-56099232 None:intergenic 55.0%
GGTCGGTGAGGACTGAATTG+AGG - chr5_4:56101375-56101394 None:intergenic 55.0%
GATGTGTGGACGTGGTTGTG+CGG - chr5_4:56101453-56101472 None:intergenic 55.0%
! GGGAAACGGGTGATGCCTTT+TGG - chr5_4:56105033-56105052 None:intergenic 55.0%
GTCATAGCAGGGTAAAGGGC+AGG - chr5_4:56107137-56107156 None:intergenic 55.0%
CTGCAAGAGGGAGGCAGAGA+AGG - chr5_4:56099854-56099873 None:intergenic 60.0%
CTTCTCTGCCTCCCTCTTGC+AGG + chr5_4:56099852-56099871 Msa0858570:CDS 60.0%
TGGACGTGGTTGTGCGGTGA+CGG - chr5_4:56101447-56101466 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 56099207 56107778 56099207 ID=Msa0858570;Name=Msa0858570
chr5_4 mRNA 56099207 56107778 56099207 ID=Msa0858570-mRNA-1;Parent=Msa0858570;Name=Msa0858570-mRNA-1;_AED=0.36;_eAED=0.36;_QI=170|1|1|1|1|1|3|540|358
chr5_4 exon 56099207 56099873 56099207 ID=Msa0858570-mRNA-1:exon:17156;Parent=Msa0858570-mRNA-1
chr5_4 exon 56105559 56105889 56105559 ID=Msa0858570-mRNA-1:exon:17157;Parent=Msa0858570-mRNA-1
chr5_4 exon 56106990 56107778 56106990 ID=Msa0858570-mRNA-1:exon:17158;Parent=Msa0858570-mRNA-1
chr5_4 five_prime_UTR 56099207 56099376 56099207 ID=Msa0858570-mRNA-1:five_prime_utr;Parent=Msa0858570-mRNA-1
chr5_4 CDS 56099377 56099873 56099377 ID=Msa0858570-mRNA-1:cds;Parent=Msa0858570-mRNA-1
chr5_4 CDS 56105559 56105889 56105559 ID=Msa0858570-mRNA-1:cds;Parent=Msa0858570-mRNA-1
chr5_4 CDS 56106990 56107238 56106990 ID=Msa0858570-mRNA-1:cds;Parent=Msa0858570-mRNA-1
chr5_4 three_prime_UTR 56107239 56107778 56107239 ID=Msa0858570-mRNA-1:three_prime_utr;Parent=Msa0858570-mRNA-1
Gene Sequence

>Msa0858570

ATGATCAGCCCACAAGATTGGCCTGAACCAATAATCCCAGTTCAATCTTTATCCGAAAGTTGCATAGATTCAATCCCTCAAAGATATATCAAACCCCTTAGTGACCGTCCATCAATAAACTCTATTTTAGAAACAACCAATAATATCCCAATAATTGACCTTAGAGGTTTACATAGTACTAACCCACATGAAAAAGCTTCAACCTTCAAGCAAATCTCTGAGGCTTGTAAAGAGTGGGGATTCTTTCAAATTGTTAACCATGGTGTTAGCCATGATTTGATGGATTTAGCTAAGGAAACTTGGCGTCAATTTTTTCACTTGCCTATGGAAGTGAAACAATTATATGCAAACTCACCAAAAACTTATGAAGGGTATGGTAGTAGACTTGGTGTTAAGAAAGGTGCTATTCTTGATTGGAGTGATTACTATTATCTTCATTATCTTCCTTTGTCTTTGAAGGACTACAACAAATGGCCTTCTCTGCCTCCCTCTTGCAGGGAGGTGTTTGATGAATATGGGATAGAATTGGTGAAGTTATGTGAGAGGTTGATGAAAGTTCTATCTATAAACCTTGGATTGGAAGAGAATTTTCTTCAAAATGCTTTTGGAGGTGAAGATATTGGTGCTTGCATAAGGGTGAATTATTTTCCCAAATGTCCACAGCCATTGTTGACTCTTGGTTTATCATCACATTCAGATCCAGGTGGCATTACTCTTTTGTTACCAGATGATCAAGTACATGGTCTTCAAGTTCGTAAAGGTGATAATTGGATTACGGTGAAACCTGTTCGTAATGCATTTATTGTCAATATTGGTGATCAAATTCAGGTTCTAAGCAATGCAATCTACAGGAGTGTAGAGCATAGAGTACTAGCAAACTCACACAAAGAAAGAGTTTCCTTAGCTTTCTTCTACAATCCCAAAAGTGACATTCCAATTGAGCCAGCAAAGGAATTGGTAAAGCCAGATAAACCTGCCCTTTACCCTGCTATGACCTTTGATGAATATAGGCTTTTCATTAGAATGAGGGGTCCATGTGGAAAATCTCAAGTTGAATCTTTAAAATCTCCAAGATGA
Protein sequence

>Msa0858570

MISPQDWPEPIIPVQSLSESCIDSIPQRYIKPLSDRPSINSILETTNNIPIIDLRGLHSTNPHEKASTFKQISEACKEWGFFQIVNHGVSHDLMDLAKETWRQFFHLPMEVKQLYANSPKTYEGYGSRLGVKKGAILDWSDYYYLHYLPLSLKDYNKWPSLPPSCREVFDEYGIELVKLCERLMKVLSINLGLEENFLQNAFGGEDIGACIRVNYFPKCPQPLLTLGLSSHSDPGGITLLLPDDQVHGLQVRKGDNWITVKPVRNAFIVNIGDQIQVLSNAIYRSVEHRVLANSHKERVSLAFFYNPKSDIPIEPAKELVKPDKPALYPAMTFDEYRLFIRMRGPCGKSQVESLKSPR*