AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1311370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1311370 MtrunA17_Chr8g0339091 91.016 512 26 5 1 506 1 498 0.0 910
Msa1311370 MtrunA17_Chr7g0234761 60.000 545 140 19 1 498 1 514 0.0 548
Msa1311370 MtrunA17_Chr5g0421111 35.526 456 202 19 106 506 140 558 3.40e-57 199
Msa1311370 MtrunA17_Chr8g0365941 41.837 294 136 11 105 388 125 393 3.86e-50 178
Msa1311370 MtrunA17_Chr3g0144641 42.053 302 146 10 219 506 112 398 1.18e-49 175
Msa1311370 MtrunA17_Chr1g0152131 46.058 241 106 8 198 435 171 390 5.42e-48 171
Msa1311370 MtrunA17_Chr8g0363921 64.394 132 45 2 250 380 102 232 3.61e-46 162
Msa1311370 MtrunA17_Chr4g0035101 54.598 174 72 4 223 396 73 239 4.33e-46 164
Msa1311370 MtrunA17_Chr5g0415291 65.289 121 40 1 252 372 67 185 1.02e-45 160
Msa1311370 MtrunA17_Chr3g0131771 62.595 131 43 2 258 385 109 236 9.47e-42 152
Msa1311370 MtrunA17_Chr8g0385911 76.344 93 19 1 296 385 142 234 3.76e-40 147
Msa1311370 MtrunA17_Chr7g0258161 69.318 88 27 0 296 383 170 257 2.52e-37 140
Msa1311370 MtrunA17_Chr1g0174161 55.932 118 46 2 296 413 157 268 6.92e-37 139
Msa1311370 MtrunA17_Chr6g0484271 62.745 102 38 0 278 379 134 235 1.79e-35 133
Msa1311370 MtrunA17_Chr4g0074161 61.446 83 28 2 282 364 192 270 2.67e-22 99.0
Msa1311370 MtrunA17_Chr1g0190731 64.000 75 26 1 290 364 184 257 1.09e-21 96.7
Msa1311370 MtrunA17_Chr1g0182791 39.655 116 56 3 254 369 285 386 1.94e-15 79.0
Msa1311370 MtrunA17_Chr4g0032951 58.462 65 27 0 299 363 355 419 2.42e-15 78.2
Msa1311370 MtrunA17_Chr1g0184841 60.000 75 29 1 290 364 111 184 3.91e-15 75.9
Msa1311370 MtrunA17_Chr2g0329041 50.649 77 31 1 285 361 325 394 5.32e-15 77.0
Msa1311370 MtrunA17_Chr4g0014771 55.385 65 29 0 299 363 118 182 5.58e-15 73.6
Msa1311370 MtrunA17_Chr7g0258181 45.946 74 40 0 299 372 243 316 3.87e-14 73.6
Msa1311370 MtrunA17_Chr1g0174271 52.239 67 32 0 299 365 298 364 4.69e-14 73.9
Msa1311370 MtrunA17_Chr1g0193321 51.562 64 30 1 301 364 464 526 5.15e-14 74.7
Msa1311370 MtrunA17_Chr7g0262691 38.136 118 66 3 257 373 215 326 2.50e-13 72.0
Msa1311370 MtrunA17_Chr3g0087771 50.769 65 32 0 299 363 322 386 5.03e-13 70.9
Msa1311370 MtrunA17_Chr5g0393721 40.625 96 47 2 300 386 225 319 1.17e-12 68.9
Msa1311370 MtrunA17_Chr1g0152651 52.308 65 30 1 299 363 274 337 1.97e-12 68.6
Msa1311370 MtrunA17_Chr8g0351881 47.692 65 34 0 299 363 316 380 2.57e-12 68.6
Msa1311370 MtrunA17_Chr1g0153241 40.449 89 45 2 277 365 70 150 2.66e-12 67.4
Msa1311370 MtrunA17_Chr3g0095391 38.144 97 56 2 268 364 281 373 1.11e-11 67.0
Msa1311370 MtrunA17_Chr3g0134741 53.125 64 29 1 300 363 230 292 1.45e-11 65.9
Msa1311370 MtrunA17_Chr7g0270871 32.624 141 84 4 224 364 137 266 7.38e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1311370 AT3G07340.1 43.080 513 180 20 1 480 1 434 7.21e-103 316
Msa1311370 AT3G07340.2 42.400 500 175 20 1 467 1 420 1.51e-93 291
Msa1311370 AT5G48560.1 42.166 517 196 19 25 506 50 498 1.10e-89 283
Msa1311370 AT5G48560.2 42.675 471 181 17 25 460 50 466 9.15e-82 262
Msa1311370 AT3G23690.1 45.149 268 104 10 221 479 113 346 4.35e-56 192
Msa1311370 AT1G68920.1 40.446 314 148 6 84 388 108 391 1.29e-52 186
Msa1311370 AT1G68920.4 40.446 314 148 6 84 388 108 391 1.29e-52 186
Msa1311370 AT1G68920.2 40.446 314 148 6 84 388 108 391 1.29e-52 186
Msa1311370 AT1G68920.3 40.000 320 140 8 84 388 108 390 1.52e-52 185
Msa1311370 AT1G26260.4 43.206 287 114 11 105 389 73 312 2.96e-48 171
Msa1311370 AT1G26260.1 43.206 287 114 11 105 389 73 312 2.96e-48 171
Msa1311370 AT1G26260.6 43.206 287 114 11 105 389 73 312 2.96e-48 171
Msa1311370 AT1G26260.2 43.206 287 114 11 105 389 73 312 2.96e-48 171
Msa1311370 AT1G59640.1 67.200 125 39 1 256 378 91 215 3.93e-48 167
Msa1311370 AT1G59640.2 67.200 125 39 1 256 378 91 215 1.88e-47 168
Msa1311370 AT1G26260.5 43.011 279 110 12 114 390 60 291 1.78e-45 163
Msa1311370 AT1G10120.2 52.258 155 59 3 251 391 144 297 5.85e-45 162
Msa1311370 AT1G10120.1 52.258 155 59 3 251 391 144 297 5.85e-45 162
Msa1311370 AT1G26260.3 63.768 138 40 4 262 390 126 262 6.43e-45 161
Msa1311370 AT5G50915.3 56.463 147 59 2 224 370 66 207 2.26e-43 155
Msa1311370 AT5G50915.4 56.463 147 59 2 224 370 66 207 2.26e-43 155
Msa1311370 AT5G50915.1 56.849 146 58 2 224 369 66 206 6.42e-43 154
Msa1311370 AT5G50915.2 56.849 146 58 2 224 369 66 206 6.42e-43 154
Msa1311370 AT2G18300.1 58.519 135 55 1 254 387 139 273 2.19e-42 154
Msa1311370 AT4G36540.2 51.913 183 72 5 206 387 62 229 7.89e-42 152
Msa1311370 AT4G34530.1 78.409 88 19 0 293 380 166 253 9.66e-42 152
Msa1311370 AT2G18300.2 58.394 137 54 2 254 389 139 273 1.12e-41 152
Msa1311370 AT5G62610.2 76.087 92 17 1 280 371 139 225 1.24e-41 150
Msa1311370 AT5G62610.1 76.087 92 17 1 280 371 139 225 1.24e-41 150
Msa1311370 AT4G36540.1 53.409 176 66 5 206 380 62 222 1.93e-41 150
Msa1311370 AT2G18300.3 58.394 137 54 2 254 389 139 273 2.28e-41 152
Msa1311370 AT3G57800.2 64.078 103 32 1 296 398 201 298 3.86e-38 144
Msa1311370 AT2G42300.1 61.682 107 36 1 296 402 182 283 4.14e-38 142
Msa1311370 AT2G42300.4 68.539 89 28 0 296 384 182 270 5.02e-38 140
Msa1311370 AT1G25330.1 67.677 99 29 2 294 391 99 195 5.77e-36 133
Msa1311370 AT1G73830.1 70.588 85 25 0 298 382 146 230 6.01e-34 129
Msa1311370 AT1G18400.2 65.000 100 33 2 297 394 143 242 6.04e-34 129
Msa1311370 AT1G73830.2 70.588 85 25 0 298 382 146 230 6.16e-34 129
Msa1311370 AT1G18400.1 69.767 86 26 0 297 382 143 228 9.52e-34 129
Msa1311370 AT3G57800.1 44.000 150 32 2 296 398 201 345 1.44e-29 120
Msa1311370 AT2G24260.2 65.753 73 24 1 292 364 28 99 4.42e-23 98.6
Msa1311370 AT2G24260.1 65.753 73 24 1 292 364 131 202 3.71e-22 98.2
Msa1311370 AT4G30980.1 72.727 66 17 1 299 364 130 194 4.82e-22 97.1
Msa1311370 AT4G30980.2 72.727 66 17 1 299 364 178 242 6.98e-22 97.4
Msa1311370 AT5G58010.1 56.667 90 38 1 275 364 75 163 1.01e-21 95.9
Msa1311370 AT2G42300.5 83.721 43 7 0 296 338 182 224 1.86e-18 84.7
Msa1311370 AT2G42300.3 83.721 43 7 0 296 338 182 224 1.86e-18 84.7
Msa1311370 AT2G42300.2 83.721 43 7 0 296 338 182 224 2.16e-18 84.7
Msa1311370 AT4G02590.3 42.336 137 68 4 228 364 22 147 1.89e-15 76.6
Msa1311370 AT2G20180.4 34.483 145 76 4 227 364 210 342 2.73e-15 78.6
Msa1311370 AT2G20180.6 34.483 145 76 4 227 364 210 342 2.73e-15 78.6
Msa1311370 AT2G20180.2 34.483 145 76 4 227 364 210 342 2.73e-15 78.6
Msa1311370 AT2G20180.3 34.483 145 76 4 227 364 210 342 2.73e-15 78.6
Msa1311370 AT4G02590.2 42.336 137 68 4 228 364 85 210 3.05e-15 77.0
Msa1311370 AT4G02590.1 42.336 137 68 4 228 364 85 210 3.05e-15 77.0
Msa1311370 AT2G20180.7 36.232 138 83 3 227 364 139 271 3.40e-15 77.8
Msa1311370 AT2G20180.1 36.232 138 83 3 227 364 139 271 3.40e-15 77.8
Msa1311370 AT2G20180.5 36.232 138 83 3 227 364 139 271 3.40e-15 77.8
Msa1311370 AT4G09180.1 52.239 67 32 0 297 363 182 248 2.17e-14 73.6
Msa1311370 AT2G42280.1 53.125 64 30 0 299 362 279 342 3.65e-14 74.3
Msa1311370 AT1G03040.1 50.476 105 41 4 282 376 124 227 4.16e-14 73.6
Msa1311370 AT1G51140.1 56.250 64 28 0 299 362 304 367 4.59e-14 74.3
Msa1311370 AT1G09530.3 39.583 96 47 2 269 364 317 401 4.97e-14 75.1
Msa1311370 AT1G09530.2 39.583 96 47 2 269 364 317 401 4.97e-14 75.1
Msa1311370 AT1G09530.5 39.583 96 47 2 269 364 317 401 4.97e-14 75.1
Msa1311370 AT1G09530.1 39.583 96 47 2 269 364 317 401 4.97e-14 75.1
Msa1311370 AT1G09530.4 39.583 96 47 2 269 364 317 401 4.97e-14 75.1
Msa1311370 AT1G09530.6 39.583 96 47 2 269 364 317 401 4.97e-14 75.1
Msa1311370 AT1G03040.2 50.000 106 42 4 281 376 118 222 5.80e-14 73.2
Msa1311370 AT2G42280.3 54.545 66 28 1 299 362 279 344 6.95e-14 73.6
Msa1311370 AT2G20180.8 35.556 135 82 3 227 361 210 339 7.33e-14 73.2
Msa1311370 AT1G03040.3 50.476 105 41 4 282 376 124 227 9.01e-14 72.8
Msa1311370 AT1G35460.1 50.746 67 33 0 297 363 179 245 9.39e-14 71.6
Msa1311370 AT4G28815.2 56.897 58 24 1 302 359 71 127 2.17e-13 70.1
Msa1311370 AT4G28815.1 56.897 58 24 1 302 359 147 203 8.20e-13 69.7
Msa1311370 AT2G46970.2 34.884 129 67 4 241 364 140 256 1.18e-12 70.1
Msa1311370 AT2G46970.1 34.884 129 67 4 241 364 171 287 1.23e-12 70.1
Msa1311370 AT2G46970.3 34.884 129 67 4 241 364 149 265 1.44e-12 69.7
Msa1311370 AT4G28800.1 53.226 62 28 1 302 363 252 312 1.79e-12 69.7
Msa1311370 AT4G33880.1 30.942 223 115 7 158 363 129 329 2.38e-12 68.9
Msa1311370 AT4G28800.2 48.611 72 35 2 302 372 264 334 5.60e-12 68.2
Msa1311370 AT4G28790.1 50.000 64 31 1 301 364 273 335 7.21e-12 67.8
Msa1311370 AT1G27740.1 43.678 87 48 1 277 363 145 230 1.13e-11 65.5
Msa1311370 AT2G14760.1 50.769 65 31 1 299 363 237 300 3.08e-11 65.1
Msa1311370 AT4G00050.2 50.769 65 31 1 299 363 105 168 4.07e-11 64.3
Msa1311370 AT2G43140.1 48.485 66 34 0 297 362 132 197 5.18e-11 62.8
Msa1311370 AT4G00050.1 50.769 65 31 1 299 363 207 270 9.02e-11 64.3
Msa1311370 AT4G28790.2 45.455 66 35 1 301 366 273 337 9.77e-11 63.9

Find 125 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCAGTTTCTATTCTTC+TGG 0.187268 8_4:+8140514 Msa1311370:three_prime_UTR
TCCGTTGACTTGTCCCAATT+TGG 0.196239 8_4:-8137261 None:intergenic
ATTATTCAATGTAAAATCTT+AGG 0.207531 8_4:+8140562 Msa1311370:three_prime_UTR
GAGGGAATTGATAGGAAAAT+TGG 0.208603 8_4:+8137389 Msa1311370:CDS
CACCTTCATTAAATTCATTT+AGG 0.217851 8_4:-8139645 None:intergenic
CTTTAGTGCTTTACCTTTGT+TGG 0.234392 8_4:-8137912 None:intergenic
AATTATTCCTTGTAGGTTAC+TGG 0.240542 8_4:+8139107 Msa1311370:intron
AATACACCTAATGGAGAAAT+TGG 0.254012 8_4:+8137810 Msa1311370:CDS
CTCTTCCTTGAATTCATATC+AGG 0.254742 8_4:-8137846 None:intergenic
TTGAATAATTTGTAAAATAG+AGG 0.259110 8_4:-8140548 None:intergenic
TTCAATTCAGGCGTAATTAA+AGG 0.267237 8_4:-8140326 None:intergenic
ATAGGAAAATTGGGAACTTT+TGG 0.267348 8_4:+8137399 Msa1311370:CDS
TCTTTGTGCCATAATAATAT+TGG 0.268551 8_4:+8139607 Msa1311370:CDS
TCTCATACTTCAATGGAAAA+TGG 0.268923 8_4:+8137636 Msa1311370:CDS
CTGGGGTTGTTGCCCATAAA+AGG 0.272608 8_4:-8139512 None:intergenic
CAGTGGGTCCCATTTGTATT+AGG 0.280658 8_4:-8139562 None:intergenic
GATCCTCTGGGCTTCAATTC+AGG 0.289630 8_4:-8140338 None:intergenic
TGCAAATTATTAGTGTTATA+TGG 0.294745 8_4:+8140605 Msa1311370:three_prime_UTR
TGAAAATGGTATCAAGAATA+TGG 0.300257 8_4:+8138281 Msa1311370:CDS
ACCGTTGTTCAGATGGGATT+TGG 0.307096 8_4:+8140079 Msa1311370:CDS
AATGCATGCCAATATTATTA+TGG 0.315999 8_4:-8139615 None:intergenic
TAATTAAGCCATTATTGATT+AGG 0.316196 8_4:+8140414 Msa1311370:three_prime_UTR
TATGGCAAAGAGAGACTAAT+TGG 0.318794 8_4:-8136981 None:intergenic
TTGGACATGTTGTTGGGATT+TGG 0.322517 8_4:-8137351 None:intergenic
ATTATAATTCATGGGGTTGT+TGG 0.331342 8_4:-8140395 None:intergenic
AATGGCTTAATTATAATTCA+TGG 0.340189 8_4:-8140404 None:intergenic
CTTAAATGCAAAGAAAATTA+AGG 0.345742 8_4:+8138239 Msa1311370:CDS
TTGACACCAATTTCTCCATT+AGG 0.351050 8_4:-8137816 None:intergenic
CTGAATCAAAGTTAAGGTTT+TGG 0.361916 8_4:-8137284 None:intergenic
CCTTGAAACTAGAAGCAAAA+TGG 0.365564 8_4:-8137059 None:intergenic
CCGTTGACTTGTCCCAATTT+GGG 0.371481 8_4:-8137260 None:intergenic
TGCAGCCTGGTACAAGATCT+TGG 0.374431 8_4:-8138965 None:intergenic
ATTTCAGTTTCTATTCTTCT+GGG 0.376480 8_4:+8140515 Msa1311370:three_prime_UTR
ACAACATTCTTCTAACCCTT+TGG 0.378957 8_4:+8137431 Msa1311370:CDS
TTGATAAAATGGTTCATCAT+TGG 0.379781 8_4:-8137459 None:intergenic
TCTGAGCAAAATACACCTAA+TGG 0.380759 8_4:+8137801 Msa1311370:CDS
AATAACATTCCTAATACAAA+TGG 0.381646 8_4:+8139553 Msa1311370:CDS
TCAAAGAAGTAGTGGCAATA+TGG 0.386578 8_4:-8136999 None:intergenic
GTGCTTTACCTTTGTTGGAT+TGG 0.388636 8_4:-8137907 None:intergenic
CAACATTGTTCATCACCATT+TGG 0.395399 8_4:-8137599 None:intergenic
TGAACAGACCTAATCAATAA+TGG 0.400480 8_4:-8140422 None:intergenic
GTGTATTCCTGTTTGAAGTT+TGG 0.400671 8_4:-8140102 None:intergenic
TTTGTTGGATTGGAAGAGTT+TGG 0.402500 8_4:-8137897 None:intergenic
GAGGGTGAGAGAAATGAAAA+TGG 0.403613 8_4:+8138267 Msa1311370:CDS
AGTCCATCACTCAAAACATT+TGG 0.406046 8_4:+8137684 Msa1311370:CDS
GAATTGAAGCCCAGAGGATC+AGG 0.415764 8_4:+8140341 Msa1311370:three_prime_UTR
CTTCACCTGATATGAATTCA+AGG 0.417266 8_4:+8137841 Msa1311370:CDS
TCTTGTACCAGGCTGCAATA+AGG 0.425820 8_4:+8138971 Msa1311370:CDS
ATGGTACTGAGGAATCTAAT+TGG 0.426318 8_4:-8139489 None:intergenic
TCATCCTCAGAGAATGCTAA+TGG 0.426501 8_4:-8140049 None:intergenic
AGAAAAGGGAAAGGGAGGGA+AGG 0.428185 8_4:-8136892 None:intergenic
AAGAGAGAAAAGGGAAAGGG+AGG 0.432099 8_4:-8136897 None:intergenic
TTCCTAAATGAATTTAATGA+AGG 0.438438 8_4:+8139643 Msa1311370:CDS
AGGATTGATTCTGTATTGTA+TGG 0.441963 8_4:+8140582 Msa1311370:three_prime_UTR
AGGGAATTGATAGGAAAATT+GGG 0.442979 8_4:+8137390 Msa1311370:CDS
TCTTGAGGAAAAGAGAGAAA+AGG 0.443994 8_4:-8136907 None:intergenic
ATGGCTTAATTATAATTCAT+GGG 0.454114 8_4:-8140403 None:intergenic
ATTTAATGAAGGTGGTTCTC+AGG 0.454780 8_4:+8139654 Msa1311370:CDS
TGGGTCTATTTAACCCATGA+TGG 0.460226 8_4:+8136857 None:intergenic
GAATGTTATTATGAATAGCT+TGG 0.462285 8_4:-8139540 None:intergenic
ACAAAATGAACTTAAGTTTG+AGG 0.470521 8_4:-8137123 None:intergenic
GACATGTTGTTGGGATTTGG+TGG 0.473535 8_4:-8137348 None:intergenic
CTTGAGGAAAAGAGAGAAAA+GGG 0.473541 8_4:-8136906 None:intergenic
TTGATTGTAAATAGGTTAGG+AGG 0.479419 8_4:+8138913 Msa1311370:intron
CTTAAACACCGTTGTTCAGA+TGG 0.480880 8_4:+8140072 Msa1311370:CDS
GGTGGTGATGATGTAGCTGC+TGG 0.485718 8_4:-8137330 None:intergenic
CCACTGCTCAGTGGAGCCAT+TGG 0.490185 8_4:+8139579 Msa1311370:CDS
CTAAATGAATTTAATGAAGG+TGG 0.490451 8_4:+8139646 Msa1311370:CDS
GAAAAGAGAGAAAAGGGAAA+GGG 0.492222 8_4:-8136900 None:intergenic
AGAGAGAAAAGGGAAAGGGA+GGG 0.493215 8_4:-8136896 None:intergenic
GATTTGGCCAAACTTCAAAC+AGG 0.499864 8_4:+8140095 Msa1311370:CDS
CTTTAGGGTGTTGAAGGTAG+TGG 0.502252 8_4:+8138210 Msa1311370:intron
TTGAAACTTGGGGAGTGTAT+TGG 0.502535 8_4:-8140124 None:intergenic
TAAGTGCTGAATCAAAGTTA+AGG 0.502693 8_4:-8137290 None:intergenic
GTCTTCAGTGAACACAAAGA+TGG 0.504687 8_4:+8139297 Msa1311370:CDS
AAAGAAAATTAAGGCAAATG+AGG 0.506222 8_4:+8138248 Msa1311370:CDS
GCAACAAGAAAATGATAGAA+TGG 0.507282 8_4:+8137746 Msa1311370:CDS
TCAAAGATCTCATACTTCAA+TGG 0.512217 8_4:+8137629 Msa1311370:CDS
GCAGAATTCTCACATGATCC+TGG 0.512529 8_4:+8137513 Msa1311370:CDS
GTCATTGCAGCGTCAAGTTG+AGG 0.516912 8_4:+8139169 Msa1311370:CDS
CTTCTCCAAGATCTTGTACC+AGG 0.517031 8_4:+8138960 Msa1311370:CDS
TGAATAATTTGTAAAATAGA+GGG 0.519597 8_4:-8140547 None:intergenic
TTGTTTACCTTATTGCAGCC+TGG 0.519916 8_4:-8138978 None:intergenic
ATAACATTCCTAATACAAAT+GGG 0.521184 8_4:+8139554 Msa1311370:CDS
TTAATTTAGCAATGATACAT+TGG 0.522229 8_4:-8140630 None:intergenic
TTCATCATTGGTACAACCAA+AGG 0.522984 8_4:-8137447 None:intergenic
AGCAAGAGTTTCAATGAAAG+AGG 0.528039 8_4:+8137573 Msa1311370:CDS
TGATTGTAAATAGGTTAGGA+GGG 0.531230 8_4:+8138914 Msa1311370:intron
AAGAGAATTCAAAGAAGTAG+TGG 0.535245 8_4:-8137007 None:intergenic
AGAAAAGCTTCTTCTTCCAA+AGG 0.537859 8_4:+8137867 Msa1311370:CDS
GGAAAAGAGAGAAAAGGGAA+AGG 0.539564 8_4:-8136901 None:intergenic
GATTGAAATTGAGACTTGAG+AGG 0.542784 8_4:-8136936 None:intergenic
TCATCATTGGTACAACCAAA+GGG 0.546397 8_4:-8137446 None:intergenic
TGGAGGAAGAGACCAAAGAA+GGG 0.551819 8_4:+8138301 Msa1311370:CDS
AATTCTGCCACATTAGACAT+TGG 0.552784 8_4:-8137498 None:intergenic
GTGGTGATGATGTAGCTGCT+GGG 0.558812 8_4:-8137329 None:intergenic
AAGAAAATTAAGGCAAATGA+GGG 0.561150 8_4:+8138249 Msa1311370:CDS
CCCAAATTGGGACAAGTCAA+CGG 0.562105 8_4:+8137260 Msa1311370:CDS
GCAGCCCTTTGAACAAAACC+AGG 0.562440 8_4:-8137531 None:intergenic
CAATGAAAGAGGTAACCAAA+TGG 0.563493 8_4:+8137584 Msa1311370:CDS
GGAGGGAGAAAATAAGTGAG+AGG 0.565662 8_4:+8138931 Msa1311370:CDS
TTTATTACCGTTGAAACTTG+GGG 0.567308 8_4:-8140134 None:intergenic
TCATTAAATTCATTTAGGAA+AGG 0.572147 8_4:-8139640 None:intergenic
CAATGGCTCCACTGAGCAGT+GGG 0.574239 8_4:-8139578 None:intergenic
TTTGTGATGAGGGAATTGAT+AGG 0.574585 8_4:+8137381 Msa1311370:CDS
TGGCTTAATTATAATTCATG+GGG 0.586205 8_4:-8140402 None:intergenic
TTAAACACCGTTGTTCAGAT+GGG 0.588839 8_4:+8140073 Msa1311370:CDS
ATGGAGGAAGAGACCAAAGA+AGG 0.588900 8_4:+8138300 Msa1311370:CDS
CTTGAGAGGAAAGACTCTTG+AGG 0.598459 8_4:-8136922 None:intergenic
CCAATGGCTCCACTGAGCAG+TGG 0.605881 8_4:-8139579 None:intergenic
GGAAGTGACTAATTCTCAAG+AGG 0.609764 8_4:+8137767 Msa1311370:CDS
AATATTATTATGGCACAAAG+AGG 0.614493 8_4:-8139605 None:intergenic
ATACACTCCCCAAGTTTCAA+CGG 0.637097 8_4:+8140127 Msa1311370:CDS
TGGTGATGATGTAGCTGCTG+GGG 0.642200 8_4:-8137328 None:intergenic
AAATGGTATCAAGAATATGG+AGG 0.642262 8_4:+8138284 Msa1311370:CDS
ATTCATGTCAGAGCAAGAAG+AGG 0.647303 8_4:+8138378 Msa1311370:CDS
GGTTGTTGCCCATAAAAGGA+TGG 0.650244 8_4:-8139508 None:intergenic
CCCATAAAAGGATGGTACTG+AGG 0.650891 8_4:-8139500 None:intergenic
GCCAAATCCCATCTGAACAA+CGG 0.655409 8_4:-8140080 None:intergenic
TGGCACAAAGAGGAATCCAA+TGG 0.662564 8_4:-8139595 None:intergenic
AAACTCTTCCAATCCAACAA+AGG 0.664009 8_4:+8137899 Msa1311370:CDS
AAATGGGACCCACTGCTCAG+TGG 0.666661 8_4:+8139570 Msa1311370:CDS
GGAGGAAGAGACCAAAGAAG+GGG 0.668214 8_4:+8138302 Msa1311370:CDS
GTATCCATTAGCATTCTCTG+AGG 0.725003 8_4:+8140045 Msa1311370:intron
ACGCCTGAATTGAAGCCCAG+AGG 0.732491 8_4:+8140335 Msa1311370:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAATTAGATCAA+AGG - chr8_4:8137168-8137187 None:intergenic 10.0%
!!! AAATTTGTTTAAATTTTTGT+CGG - chr8_4:8138012-8138031 None:intergenic 10.0%
!!! TCAATTTTTTTTTTTTATGT+TGG + chr8_4:8138160-8138179 Msa1311370:intron 10.0%
!!! ATAATTTTATGTAATATCAA+AGG - chr8_4:8138517-8138536 None:intergenic 10.0%
!! TTTGATATTACATAAAATTA+TGG + chr8_4:8138516-8138535 Msa1311370:intron 10.0%
!!! TTTTTGTTATGTTTTAAATT+AGG - chr8_4:8138846-8138865 None:intergenic 10.0%
!!! AAATAAGTTTTGATTAATTA+AGG - chr8_4:8140251-8140270 None:intergenic 10.0%
!!! AATTAATCAAAACTTATTTT+TGG + chr8_4:8140252-8140271 Msa1311370:intron 10.0%
!!! ATTTTTTTTTTAGTCCATTA+TGG + chr8_4:8137176-8137195 Msa1311370:exon 15.0%
!!! ATTTTAGTCTAAAAATAAAC+AGG - chr8_4:8138063-8138082 None:intergenic 15.0%
!!! TTTTTTTTTTGTTGTGAAAT+TGG + chr8_4:8138473-8138492 Msa1311370:intron 15.0%
!! AGGAATAATTAATAATTCAT+AGG - chr8_4:8139097-8139116 None:intergenic 15.0%
!! AATTATTAATTATTCCTTGT+AGG + chr8_4:8139100-8139119 Msa1311370:intron 15.0%
!!! AAATTTTTGTCTTAATTATC+TGG - chr8_4:8139886-8139905 None:intergenic 15.0%
!! GATAATTAAGACAAAAATTT+AGG + chr8_4:8139886-8139905 Msa1311370:intron 15.0%
!! TTTGAAAAATAGAGTTAATT+AGG - chr8_4:8140016-8140035 None:intergenic 15.0%
!!! ATTAAAATGTCATTTTCATT+TGG + chr8_4:8140211-8140230 Msa1311370:intron 15.0%
!!! TGAATAATTTGTAAAATAGA+GGG - chr8_4:8140550-8140569 None:intergenic 15.0%
!!! TTGAATAATTTGTAAAATAG+AGG - chr8_4:8140551-8140570 None:intergenic 15.0%
!! ATTATTCAATGTAAAATCTT+AGG + chr8_4:8140562-8140581 Msa1311370:three_prime_UTR 15.0%
!!! GCATATTTTCTTTGATAAAA+TGG - chr8_4:8137473-8137492 None:intergenic 20.0%
!! CTTAAATGCAAAGAAAATTA+AGG + chr8_4:8138239-8138258 Msa1311370:CDS 20.0%
!! ATGAATCTTTGATTGTAAAT+AGG + chr8_4:8138905-8138924 Msa1311370:intron 20.0%
!! AATCAGAATACAAAACAAAT+TGG + chr8_4:8139019-8139038 Msa1311370:intron 20.0%
!!! TTTGTACTTTTTCACTAATT+TGG + chr8_4:8139066-8139085 Msa1311370:intron 20.0%
!! TATAGAATTAAGATGCTTAT+TGG - chr8_4:8139209-8139228 None:intergenic 20.0%
!!! AAATATCTGAAATCACAAAA+AGG - chr8_4:8139437-8139456 None:intergenic 20.0%
!! AATAACATTCCTAATACAAA+TGG + chr8_4:8139553-8139572 Msa1311370:CDS 20.0%
!! ATAACATTCCTAATACAAAT+GGG + chr8_4:8139554-8139573 Msa1311370:CDS 20.0%
!! TCATTAAATTCATTTAGGAA+AGG - chr8_4:8139643-8139662 None:intergenic 20.0%
!! TTCCTAAATGAATTTAATGA+AGG + chr8_4:8139643-8139662 Msa1311370:CDS 20.0%
!! ATTAATTAAGGTCAAATTTC+TGG - chr8_4:8140239-8140258 None:intergenic 20.0%
!! ATGGCTTAATTATAATTCAT+GGG - chr8_4:8140406-8140425 None:intergenic 20.0%
!! AATGGCTTAATTATAATTCA+TGG - chr8_4:8140407-8140426 None:intergenic 20.0%
!!! TAATTAAGCCATTATTGATT+AGG + chr8_4:8140414-8140433 Msa1311370:three_prime_UTR 20.0%
!! CTAACTTAAAAAACTAACAA+AGG - chr8_4:8140458-8140477 None:intergenic 20.0%
!! TGCAAATTATTAGTGTTATA+TGG + chr8_4:8140605-8140624 Msa1311370:three_prime_UTR 20.0%
!! TTAATTTAGCAATGATACAT+TGG - chr8_4:8140633-8140652 None:intergenic 20.0%
!!! ATTGGAGATTTTGATGAATT+GGG - chr8_4:8136966-8136985 None:intergenic 25.0%
!!! AATTGGAGATTTTGATGAAT+TGG - chr8_4:8136967-8136986 None:intergenic 25.0%
!!! TAGTTTTTTTTGCTTTTGGT+TGG - chr8_4:8137103-8137122 None:intergenic 25.0%
! ACAAAATGAACTTAAGTTTG+AGG - chr8_4:8137126-8137145 None:intergenic 25.0%
!!! AAAGAATTGGTTTTCCATAA+TGG - chr8_4:8137193-8137212 None:intergenic 25.0%
!! AACCAATTCTTTTTAAATGC+TGG + chr8_4:8137201-8137220 Msa1311370:CDS 25.0%
! ATCCAGCATTTAAAAAGAAT+TGG - chr8_4:8137206-8137225 None:intergenic 25.0%
!!! ATTGTTTTTTCAACCCAAAT+TGG + chr8_4:8137247-8137266 Msa1311370:CDS 25.0%
!!! TTGTTTTTTCAACCCAAATT+GGG + chr8_4:8137248-8137267 Msa1311370:CDS 25.0%
!! CAATGAAAATTTTGTGATGA+GGG + chr8_4:8137371-8137390 Msa1311370:CDS 25.0%
! TTGATAAAATGGTTCATCAT+TGG - chr8_4:8137462-8137481 None:intergenic 25.0%
!! GATGACAAAAAGTCTAAAAT+GGG - chr8_4:8137961-8137980 None:intergenic 25.0%
!!! AAATTTTAGTCCATAGAGTA+TGG + chr8_4:8138026-8138045 Msa1311370:intron 25.0%
!!! TAAAAACATATTTTAGTCCC+AGG - chr8_4:8138126-8138145 None:intergenic 25.0%
!!! ATCTCATTTCTTTTGACTTT+AGG + chr8_4:8138194-8138213 Msa1311370:intron 25.0%
!!! TCTCATTTCTTTTGACTTTA+GGG + chr8_4:8138195-8138214 Msa1311370:intron 25.0%
! AAAGAAAATTAAGGCAAATG+AGG + chr8_4:8138248-8138267 Msa1311370:CDS 25.0%
! AAGAAAATTAAGGCAAATGA+GGG + chr8_4:8138249-8138268 Msa1311370:CDS 25.0%
! TGAAAATGGTATCAAGAATA+TGG + chr8_4:8138281-8138300 Msa1311370:CDS 25.0%
!! ACATGAATGTAATCTTTTTG+AGG - chr8_4:8138366-8138385 None:intergenic 25.0%
! TTCCAAAAACATGATATTGT+GGG + chr8_4:8138794-8138813 Msa1311370:intron 25.0%
! ATTAGGTTTGCAACTAATAT+TGG - chr8_4:8138829-8138848 None:intergenic 25.0%
! TCTTTGATTGTAAATAGGTT+AGG + chr8_4:8138910-8138929 Msa1311370:intron 25.0%
!! TTTTCTTGCTCATTAAGTTA+TGG + chr8_4:8139244-8139263 Msa1311370:intron 25.0%
! GAATGTTATTATGAATAGCT+TGG - chr8_4:8139543-8139562 None:intergenic 25.0%
! AATATTATTATGGCACAAAG+AGG - chr8_4:8139608-8139627 None:intergenic 25.0%
! TCTTTGTGCCATAATAATAT+TGG + chr8_4:8139607-8139626 Msa1311370:CDS 25.0%
! AATGCATGCCAATATTATTA+TGG - chr8_4:8139618-8139637 None:intergenic 25.0%
! CACCTTCATTAAATTCATTT+AGG - chr8_4:8139648-8139667 None:intergenic 25.0%
! CTAAATGAATTTAATGAAGG+TGG + chr8_4:8139646-8139665 Msa1311370:CDS 25.0%
! CTTCATATATTAGTACACAA+TGG - chr8_4:8139962-8139981 None:intergenic 25.0%
! CATTGTGTACTAATATATGA+AGG + chr8_4:8139960-8139979 Msa1311370:intron 25.0%
!! TTTTATTACCGTTGAAACTT+GGG - chr8_4:8140138-8140157 None:intergenic 25.0%
! TGGCTTAATTATAATTCATG+GGG - chr8_4:8140405-8140424 None:intergenic 25.0%
! TATTTCAGTTTCTATTCTTC+TGG + chr8_4:8140514-8140533 Msa1311370:three_prime_UTR 25.0%
! ATTTCAGTTTCTATTCTTCT+GGG + chr8_4:8140515-8140534 Msa1311370:three_prime_UTR 25.0%
!! TTGGAGATTTTGATGAATTG+GGG - chr8_4:8136965-8136984 None:intergenic 30.0%
AAGAGAATTCAAAGAAGTAG+TGG - chr8_4:8137010-8137029 None:intergenic 30.0%
!!! GAGGTAGTTTTTTTTGCTTT+TGG - chr8_4:8137107-8137126 None:intergenic 30.0%
TGAAAAAACAATCTTGGGTT+TGG - chr8_4:8137239-8137258 None:intergenic 30.0%
! TGGGTTGAAAAAACAATCTT+GGG - chr8_4:8137244-8137263 None:intergenic 30.0%
!! TTGGGTTGAAAAAACAATCT+TGG - chr8_4:8137245-8137264 None:intergenic 30.0%
! CTGAATCAAAGTTAAGGTTT+TGG - chr8_4:8137287-8137306 None:intergenic 30.0%
!! TAAGTGCTGAATCAAAGTTA+AGG - chr8_4:8137293-8137312 None:intergenic 30.0%
! TTTTCATTGGACATGTTGTT+GGG - chr8_4:8137360-8137379 None:intergenic 30.0%
! ATTTTCATTGGACATGTTGT+TGG - chr8_4:8137361-8137380 None:intergenic 30.0%
! CCTCATCACAAAATTTTCAT+TGG - chr8_4:8137373-8137392 None:intergenic 30.0%
! CCAATGAAAATTTTGTGATG+AGG + chr8_4:8137370-8137389 Msa1311370:CDS 30.0%
AGGGAATTGATAGGAAAATT+GGG + chr8_4:8137390-8137409 Msa1311370:CDS 30.0%
! ATAGGAAAATTGGGAACTTT+TGG + chr8_4:8137399-8137418 Msa1311370:CDS 30.0%
TCAAAGATCTCATACTTCAA+TGG + chr8_4:8137629-8137648 Msa1311370:CDS 30.0%
TCTCATACTTCAATGGAAAA+TGG + chr8_4:8137636-8137655 Msa1311370:CDS 30.0%
! CTATCATTTTCTTGTTGCAA+TGG - chr8_4:8137744-8137763 None:intergenic 30.0%
GCAACAAGAAAATGATAGAA+TGG + chr8_4:8137746-8137765 Msa1311370:CDS 30.0%
AATACACCTAATGGAGAAAT+TGG + chr8_4:8137810-8137829 Msa1311370:CDS 30.0%
CGATGACAAAAAGTCTAAAA+TGG - chr8_4:8137962-8137981 None:intergenic 30.0%
ACAATTTAGTCCATACTCTA+TGG - chr8_4:8138039-8138058 None:intergenic 30.0%
AAATGGTATCAAGAATATGG+AGG + chr8_4:8138284-8138303 Msa1311370:CDS 30.0%
!!! ATGTAATCTTTTTGAGGTTC+AGG - chr8_4:8138360-8138379 None:intergenic 30.0%
TTCAACAACCACTAATATGT+TGG - chr8_4:8138622-8138641 None:intergenic 30.0%
TTGCACTGTAATCATATCAA+TGG - chr8_4:8138735-8138754 None:intergenic 30.0%
CTTCCAAAAACATGATATTG+TGG + chr8_4:8138793-8138812 Msa1311370:intron 30.0%
GCAACTAATATTGGATATTG+TGG - chr8_4:8138820-8138839 None:intergenic 30.0%
TTGATTGTAAATAGGTTAGG+AGG + chr8_4:8138913-8138932 Msa1311370:intron 30.0%
TGATTGTAAATAGGTTAGGA+GGG + chr8_4:8138914-8138933 Msa1311370:intron 30.0%
AATTATTCCTTGTAGGTTAC+TGG + chr8_4:8139107-8139126 Msa1311370:intron 30.0%
CAGTGAAAAAGATCATTAAC+CGG - chr8_4:8139829-8139848 None:intergenic 30.0%
TAGTACACAATGGAACAATT+GGG - chr8_4:8139952-8139971 None:intergenic 30.0%
TTAGTACACAATGGAACAAT+TGG - chr8_4:8139953-8139972 None:intergenic 30.0%
TTTATTACCGTTGAAACTTG+GGG - chr8_4:8140137-8140156 None:intergenic 30.0%
!! GTTTTATTACCGTTGAAACT+TGG - chr8_4:8140139-8140158 None:intergenic 30.0%
CAACGGTAATAAAACAGAAA+AGG + chr8_4:8140144-8140163 Msa1311370:intron 30.0%
TTCAATTCAGGCGTAATTAA+AGG - chr8_4:8140329-8140348 None:intergenic 30.0%
ATTATAATTCATGGGGTTGT+TGG - chr8_4:8140398-8140417 None:intergenic 30.0%
TGAACAGACCTAATCAATAA+TGG - chr8_4:8140425-8140444 None:intergenic 30.0%
! AGGATTGATTCTGTATTGTA+TGG + chr8_4:8140582-8140601 Msa1311370:three_prime_UTR 30.0%
GAAAAAGATTAGGCCATCAT+GGG - chr8_4:8136873-8136892 None:intergenic 35.0%
GAAAAGAGAGAAAAGGGAAA+GGG - chr8_4:8136903-8136922 None:intergenic 35.0%
CTTGAGGAAAAGAGAGAAAA+GGG - chr8_4:8136909-8136928 None:intergenic 35.0%
TCTTGAGGAAAAGAGAGAAA+AGG - chr8_4:8136910-8136929 None:intergenic 35.0%
GATTGAAATTGAGACTTGAG+AGG - chr8_4:8136939-8136958 None:intergenic 35.0%
!! AGATTTTGATGAATTGGGGT+TGG - chr8_4:8136961-8136980 None:intergenic 35.0%
TATGGCAAAGAGAGACTAAT+TGG - chr8_4:8136984-8137003 None:intergenic 35.0%
TCAAAGAAGTAGTGGCAATA+TGG - chr8_4:8137002-8137021 None:intergenic 35.0%
CCTTGAAACTAGAAGCAAAA+TGG - chr8_4:8137062-8137081 None:intergenic 35.0%
!!! CCATTTTGCTTCTAGTTTCA+AGG + chr8_4:8137059-8137078 Msa1311370:five_prime_UTR 35.0%
TTTGTGATGAGGGAATTGAT+AGG + chr8_4:8137381-8137400 Msa1311370:CDS 35.0%
GAGGGAATTGATAGGAAAAT+TGG + chr8_4:8137389-8137408 Msa1311370:CDS 35.0%
ACAACATTCTTCTAACCCTT+TGG + chr8_4:8137431-8137450 Msa1311370:CDS 35.0%
TCATCATTGGTACAACCAAA+GGG - chr8_4:8137449-8137468 None:intergenic 35.0%
TTCATCATTGGTACAACCAA+AGG - chr8_4:8137450-8137469 None:intergenic 35.0%
GCAAAAACCAATGTCTAATG+TGG + chr8_4:8137491-8137510 Msa1311370:CDS 35.0%
AATTCTGCCACATTAGACAT+TGG - chr8_4:8137501-8137520 None:intergenic 35.0%
!!! ATGATCCTGGTTTTGTTCAA+AGG + chr8_4:8137526-8137545 Msa1311370:CDS 35.0%
!!! TGATCCTGGTTTTGTTCAAA+GGG + chr8_4:8137527-8137546 Msa1311370:CDS 35.0%
! GCTGCAAAATTTTCTTGCTT+TGG + chr8_4:8137549-8137568 Msa1311370:CDS 35.0%
AGCAAGAGTTTCAATGAAAG+AGG + chr8_4:8137573-8137592 Msa1311370:CDS 35.0%
CAATGAAAGAGGTAACCAAA+TGG + chr8_4:8137584-8137603 Msa1311370:CDS 35.0%
CAACATTGTTCATCACCATT+TGG - chr8_4:8137602-8137621 None:intergenic 35.0%
AGTCCATCACTCAAAACATT+TGG + chr8_4:8137684-8137703 Msa1311370:CDS 35.0%
!! GATCCAAATGTTTTGAGTGA+TGG - chr8_4:8137690-8137709 None:intergenic 35.0%
TCTGAGCAAAATACACCTAA+TGG + chr8_4:8137801-8137820 Msa1311370:CDS 35.0%
TTGACACCAATTTCTCCATT+AGG - chr8_4:8137819-8137838 None:intergenic 35.0%
CTTCACCTGATATGAATTCA+AGG + chr8_4:8137841-8137860 Msa1311370:CDS 35.0%
CTCTTCCTTGAATTCATATC+AGG - chr8_4:8137849-8137868 None:intergenic 35.0%
AGAAAAGCTTCTTCTTCCAA+AGG + chr8_4:8137867-8137886 Msa1311370:CDS 35.0%
! TTTGTTGGATTGGAAGAGTT+TGG - chr8_4:8137900-8137919 None:intergenic 35.0%
AAACTCTTCCAATCCAACAA+AGG + chr8_4:8137899-8137918 Msa1311370:CDS 35.0%
CTTTAGTGCTTTACCTTTGT+TGG - chr8_4:8137915-8137934 None:intergenic 35.0%
!!! GCTGCAATTTTTTAAGAGTG+CGG + chr8_4:8137934-8137953 Msa1311370:intron 35.0%
!!! TGAGTGTTGCAATTTTTTCC+TGG + chr8_4:8138105-8138124 Msa1311370:intron 35.0%
!!! GAGTGTTGCAATTTTTTCCT+GGG + chr8_4:8138106-8138125 Msa1311370:intron 35.0%
!!! TTTTGACTTTAGGGTGTTGA+AGG + chr8_4:8138204-8138223 Msa1311370:intron 35.0%
!!! TAATCTTTTTGAGGTTCAGG+AGG - chr8_4:8138357-8138376 None:intergenic 35.0%
! ATGGTACTGAGGAATCTAAT+TGG - chr8_4:8139492-8139511 None:intergenic 35.0%
!!! ATGAATAGCTTGGTTTTGCT+GGG - chr8_4:8139533-8139552 None:intergenic 35.0%
!!! TATGAATAGCTTGGTTTTGC+TGG - chr8_4:8139534-8139553 None:intergenic 35.0%
ATTTAATGAAGGTGGTTCTC+AGG + chr8_4:8139654-8139673 Msa1311370:CDS 35.0%
ATCAAGTGATTGAGTTCTAC+CGG + chr8_4:8139807-8139826 Msa1311370:intron 35.0%
! GTCTTAATTATCTGGTTCCT+AGG - chr8_4:8139878-8139897 None:intergenic 35.0%
TTAAACACCGTTGTTCAGAT+GGG + chr8_4:8140073-8140092 Msa1311370:CDS 35.0%
! GTGTATTCCTGTTTGAAGTT+TGG - chr8_4:8140105-8140124 None:intergenic 35.0%
!!! ACTTATTTTTGGTCCAATGC+AGG + chr8_4:8140263-8140282 Msa1311370:intron 35.0%
!! TGATTGATTTGAACCTGCAT+TGG - chr8_4:8140279-8140298 None:intergenic 35.0%
GGAAAAAGATTAGGCCATCA+TGG - chr8_4:8136874-8136893 None:intergenic 40.0%
GGAAAAGAGAGAAAAGGGAA+AGG - chr8_4:8136904-8136923 None:intergenic 40.0%
TTGGACATGTTGTTGGGATT+TGG - chr8_4:8137354-8137373 None:intergenic 40.0%
GGAAGTGACTAATTCTCAAG+AGG + chr8_4:8137767-8137786 Msa1311370:CDS 40.0%
!!! AGAGTTTGGTGCTTTTCCTT+TGG - chr8_4:8137886-8137905 None:intergenic 40.0%
GTGCTTTACCTTTGTTGGAT+TGG - chr8_4:8137910-8137929 None:intergenic 40.0%
GAGGGTGAGAGAAATGAAAA+TGG + chr8_4:8138267-8138286 Msa1311370:CDS 40.0%
!! CTGTTTTTCTTCCCCTTCTT+TGG - chr8_4:8138316-8138335 None:intergenic 40.0%
ATTCATGTCAGAGCAAGAAG+AGG + chr8_4:8138378-8138397 Msa1311370:CDS 40.0%
TCATGCAGCCAACATATTAG+TGG + chr8_4:8138611-8138630 Msa1311370:intron 40.0%
AGTGGTTGTTGAATCGAGAT+CGG + chr8_4:8138629-8138648 Msa1311370:intron 40.0%
ACAGTGCAAACGCGTTAAAT+CGG + chr8_4:8138746-8138765 Msa1311370:intron 40.0%
! GGCCCACAATATCATGTTTT+TGG - chr8_4:8138799-8138818 None:intergenic 40.0%
TTGTTTACCTTATTGCAGCC+TGG - chr8_4:8138981-8139000 None:intergenic 40.0%
! TGCTTTTCCAGTAACCTACA+AGG - chr8_4:8139117-8139136 None:intergenic 40.0%
GTCTTCAGTGAACACAAAGA+TGG + chr8_4:8139297-8139316 Msa1311370:CDS 40.0%
! TCCTCAGTACCATCCTTTTA+TGG + chr8_4:8139499-8139518 Msa1311370:CDS 40.0%
! CCTCAGTACCATCCTTTTAT+GGG + chr8_4:8139500-8139519 Msa1311370:CDS 40.0%
!!! TGAATAGCTTGGTTTTGCTG+GGG - chr8_4:8139532-8139551 None:intergenic 40.0%
GTATCCATTAGCATTCTCTG+AGG + chr8_4:8140045-8140064 Msa1311370:intron 40.0%
TCATCCTCAGAGAATGCTAA+TGG - chr8_4:8140052-8140071 None:intergenic 40.0%
CTTAAACACCGTTGTTCAGA+TGG + chr8_4:8140072-8140091 Msa1311370:CDS 40.0%
GATTTGGCCAAACTTCAAAC+AGG + chr8_4:8140095-8140114 Msa1311370:CDS 40.0%
! TTGAAACTTGGGGAGTGTAT+TGG - chr8_4:8140127-8140146 None:intergenic 40.0%
ATACACTCCCCAAGTTTCAA+CGG + chr8_4:8140127-8140146 Msa1311370:CDS 40.0%
GGGAGGGAAGGAAAAAGATT+AGG - chr8_4:8136883-8136902 None:intergenic 45.0%
AGAGAGAAAAGGGAAAGGGA+GGG - chr8_4:8136899-8136918 None:intergenic 45.0%
AAGAGAGAAAAGGGAAAGGG+AGG - chr8_4:8136900-8136919 None:intergenic 45.0%
CTTGAGAGGAAAGACTCTTG+AGG - chr8_4:8136925-8136944 None:intergenic 45.0%
!! CCGTTGACTTGTCCCAATTT+GGG - chr8_4:8137263-8137282 None:intergenic 45.0%
CCCAAATTGGGACAAGTCAA+CGG + chr8_4:8137260-8137279 Msa1311370:CDS 45.0%
!! TCCGTTGACTTGTCCCAATT+TGG - chr8_4:8137264-8137283 None:intergenic 45.0%
GACATGTTGTTGGGATTTGG+TGG - chr8_4:8137351-8137370 None:intergenic 45.0%
GCAGAATTCTCACATGATCC+TGG + chr8_4:8137513-8137532 Msa1311370:CDS 45.0%
!! CTTTAGGGTGTTGAAGGTAG+TGG + chr8_4:8138210-8138229 Msa1311370:intron 45.0%
ATGGAGGAAGAGACCAAAGA+AGG + chr8_4:8138300-8138319 Msa1311370:CDS 45.0%
TGGAGGAAGAGACCAAAGAA+GGG + chr8_4:8138301-8138320 Msa1311370:CDS 45.0%
CTGCATGAATGCATGCAACA+CGG - chr8_4:8138599-8138618 None:intergenic 45.0%
GTGGTTGTTGAATCGAGATC+GGG + chr8_4:8138630-8138649 Msa1311370:intron 45.0%
CAAACGCGTTAAATCGGTGA+TGG + chr8_4:8138752-8138771 Msa1311370:intron 45.0%
GGAGGGAGAAAATAAGTGAG+AGG + chr8_4:8138931-8138950 Msa1311370:CDS 45.0%
CTTCTCCAAGATCTTGTACC+AGG + chr8_4:8138960-8138979 Msa1311370:CDS 45.0%
TCTTGTACCAGGCTGCAATA+AGG + chr8_4:8138971-8138990 Msa1311370:CDS 45.0%
CCCATAAAAGGATGGTACTG+AGG - chr8_4:8139503-8139522 None:intergenic 45.0%
GGTTGTTGCCCATAAAAGGA+TGG - chr8_4:8139511-8139530 None:intergenic 45.0%
CAGTGGGTCCCATTTGTATT+AGG - chr8_4:8139565-8139584 None:intergenic 45.0%
TGGCACAAAGAGGAATCCAA+TGG - chr8_4:8139598-8139617 None:intergenic 45.0%
CTATCAAGCTCGCTATTCCT+AGG + chr8_4:8139858-8139877 Msa1311370:intron 45.0%
ACCGTTGTTCAGATGGGATT+TGG + chr8_4:8140079-8140098 Msa1311370:CDS 45.0%
GCCAAATCCCATCTGAACAA+CGG - chr8_4:8140083-8140102 None:intergenic 45.0%
! AGCAGTTTTCCTGATCCTCT+GGG - chr8_4:8140353-8140372 None:intergenic 45.0%
!! AAAAAAAAAAAAAATTGATA+GGG - chr8_4:8138461-8138480 None:intergenic 5.0%
!! AAAAAAAAAAAAAAATTGAT+AGG - chr8_4:8138462-8138481 None:intergenic 5.0%
AGAAAAGGGAAAGGGAGGGA+AGG - chr8_4:8136895-8136914 None:intergenic 50.0%
! TGGTGATGATGTAGCTGCTG+GGG - chr8_4:8137331-8137350 None:intergenic 50.0%
! GTGGTGATGATGTAGCTGCT+GGG - chr8_4:8137332-8137351 None:intergenic 50.0%
GCAGCCCTTTGAACAAAACC+AGG - chr8_4:8137534-8137553 None:intergenic 50.0%
GGAGGAAGAGACCAAAGAAG+GGG + chr8_4:8138302-8138321 Msa1311370:CDS 50.0%
TGCAGCCTGGTACAAGATCT+TGG - chr8_4:8138968-8138987 None:intergenic 50.0%
! GTCATTGCAGCGTCAAGTTG+AGG + chr8_4:8139169-8139188 Msa1311370:CDS 50.0%
CTGGGGTTGTTGCCCATAAA+AGG - chr8_4:8139515-8139534 None:intergenic 50.0%
GATCCTCTGGGCTTCAATTC+AGG - chr8_4:8140341-8140360 None:intergenic 50.0%
GAATTGAAGCCCAGAGGATC+AGG + chr8_4:8140341-8140360 Msa1311370:three_prime_UTR 50.0%
! CAGCAGTTTTCCTGATCCTC+TGG - chr8_4:8140354-8140373 None:intergenic 50.0%
! GGTGGTGATGATGTAGCTGC+TGG - chr8_4:8137333-8137352 None:intergenic 55.0%
AAATGGGACCCACTGCTCAG+TGG + chr8_4:8139570-8139589 Msa1311370:CDS 55.0%
CAATGGCTCCACTGAGCAGT+GGG - chr8_4:8139581-8139600 None:intergenic 55.0%
ACGCCTGAATTGAAGCCCAG+AGG + chr8_4:8140335-8140354 Msa1311370:three_prime_UTR 55.0%
CCAATGGCTCCACTGAGCAG+TGG - chr8_4:8139582-8139601 None:intergenic 60.0%
CCACTGCTCAGTGGAGCCAT+TGG + chr8_4:8139579-8139598 Msa1311370:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 8136866 8140670 8136866 ID=Msa1311370;Name=Msa1311370
chr8_4 mRNA 8136866 8140670 8136866 ID=Msa1311370-mRNA-1;Parent=Msa1311370;Name=Msa1311370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=329|1|1|1|1|1|8|348|506
chr8_4 exon 8136866 8137920 8136866 ID=Msa1311370-mRNA-1:exon:2995;Parent=Msa1311370-mRNA-1
chr8_4 exon 8138216 8138434 8138216 ID=Msa1311370-mRNA-1:exon:2996;Parent=Msa1311370-mRNA-1
chr8_4 exon 8138927 8138992 8138927 ID=Msa1311370-mRNA-1:exon:2997;Parent=Msa1311370-mRNA-1
chr8_4 exon 8139122 8139190 8139122 ID=Msa1311370-mRNA-1:exon:2998;Parent=Msa1311370-mRNA-1
chr8_4 exon 8139280 8139354 8139280 ID=Msa1311370-mRNA-1:exon:2999;Parent=Msa1311370-mRNA-1
chr8_4 exon 8139451 8139675 8139451 ID=Msa1311370-mRNA-1:exon:3000;Parent=Msa1311370-mRNA-1
chr8_4 exon 8140046 8140148 8140046 ID=Msa1311370-mRNA-1:exon:3001;Parent=Msa1311370-mRNA-1
chr8_4 exon 8140285 8140670 8140285 ID=Msa1311370-mRNA-1:exon:3002;Parent=Msa1311370-mRNA-1
chr8_4 five_prime_UTR 8136866 8137194 8136866 ID=Msa1311370-mRNA-1:five_prime_utr;Parent=Msa1311370-mRNA-1
chr8_4 CDS 8137195 8137920 8137195 ID=Msa1311370-mRNA-1:cds;Parent=Msa1311370-mRNA-1
chr8_4 CDS 8138216 8138434 8138216 ID=Msa1311370-mRNA-1:cds;Parent=Msa1311370-mRNA-1
chr8_4 CDS 8138927 8138992 8138927 ID=Msa1311370-mRNA-1:cds;Parent=Msa1311370-mRNA-1
chr8_4 CDS 8139122 8139190 8139122 ID=Msa1311370-mRNA-1:cds;Parent=Msa1311370-mRNA-1
chr8_4 CDS 8139280 8139354 8139280 ID=Msa1311370-mRNA-1:cds;Parent=Msa1311370-mRNA-1
chr8_4 CDS 8139451 8139675 8139451 ID=Msa1311370-mRNA-1:cds;Parent=Msa1311370-mRNA-1
chr8_4 CDS 8140046 8140148 8140046 ID=Msa1311370-mRNA-1:cds;Parent=Msa1311370-mRNA-1
chr8_4 CDS 8140285 8140322 8140285 ID=Msa1311370-mRNA-1:cds;Parent=Msa1311370-mRNA-1
chr8_4 three_prime_UTR 8140323 8140670 8140323 ID=Msa1311370-mRNA-1:three_prime_utr;Parent=Msa1311370-mRNA-1
Gene Sequence

>Msa1311370

ATGGAAAACCAATTCTTTTTAAATGCTGGATTTGAAACTTACCAAACCCAAGATTGTTTTTTCAACCCAAATTGGGACAAGTCAACGGACCAAAACCTTAACTTTGATTCAGCACTTAGTTCAATTGTCTCATCCCCAGCAGCTACATCATCACCACCAAATCCCAACAACATGTCCAATGAAAATTTTGTGATGAGGGAATTGATAGGAAAATTGGGAACTTTTGGTGAGATCTCACAACATTCTTCTAACCCTTTGGTTGTACCAATGATGAACCATTTTATCAAAGAAAATATGCAAAAACCAATGTCTAATGTGGCAGAATTCTCACATGATCCTGGTTTTGTTCAAAGGGCTGCAAAATTTTCTTGCTTTGGTAGCAAGAGTTTCAATGAAAGAGGTAACCAAATGGTGATGAACAATGTTGACTTAGCTCAAAGATCTCATACTTCAATGGAAAATGGAATGAAGTTATCAAGAGTTTCAAGTAGTCCATCACTCAAAACATTTGGATCTCAAATGATGAATCATGACAACAAGAATTCTCCATTGCAACAAGAAAATGATAGAATGGAAGTGACTAATTCTCAAGAGGAATCTACAATATCTGAGCAAAATACACCTAATGGAGAAATTGGTGTCAAAGCTTCACCTGATATGAATTCAAGGAAGAGAAAAGCTTCTTCTTCCAAAGGAAAAGCACCAAACTCTTCCAATCCAACAAAGGGTGTTGAAGGTAGTGGTGAAGACTTAAATGCAAAGAAAATTAAGGCAAATGAGGGTGAGAGAAATGAAAATGGTATCAAGAATATGGAGGAAGAGACCAAAGAAGGGGAAGAAAAACAGAACAAGAGTGACTCAAAACCTCCTGAACCTCAAAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGTCACAGTCTTGCAGAACGAGTTAGGAGGGAGAAAATAAGTGAGAGGATGAAACTTCTCCAAGATCTTGTACCAGGCTGCAATAAGGTTACTGGAAAAGCACTTATGCTTGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTTTTGTCTATGAAATTGTCTTCAGTGAACACAAAGATGGATTTAAGTATTGAAAGTCTTGTTGTATCAAAAGATATATTTCAATCAAATAATTCTTTGCAAAACTCAATGTTCCAATTAGATTCCTCAGTACCATCCTTTTATGGGCAACAACCCCAGCAAAACCAAGCTATTCATAATAACATTCCTAATACAAATGGGACCCACTGCTCAGTGGAGCCATTGGATTCCTCTTTGTGCCATAATAATATTGGCATGCATTTACCTTTCCTAAATGAATTTAATGAAGGTGGTTCTCAGTATCCATTAGCATTCTCTGAGGATGACTTAAACACCGTTGTTCAGATGGGATTTGGCCAAACTTCAAACAGGAATACACCAATACACTCCCCAAGTTTCAACGGTTCAAATCAATCAACACAAATGAAAATTGAGCTCTAA
Protein sequence

>Msa1311370

MENQFFLNAGFETYQTQDCFFNPNWDKSTDQNLNFDSALSSIVSSPAATSSPPNPNNMSNENFVMRELIGKLGTFGEISQHSSNPLVVPMMNHFIKENMQKPMSNVAEFSHDPGFVQRAAKFSCFGSKSFNERGNQMVMNNVDLAQRSHTSMENGMKLSRVSSSPSLKTFGSQMMNHDNKNSPLQQENDRMEVTNSQEESTISEQNTPNGEIGVKASPDMNSRKRKASSSKGKAPNSSNPTKGVEGSGEDLNAKKIKANEGERNENGIKNMEEETKEGEEKQNKSDSKPPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTKMDLSIESLVVSKDIFQSNNSLQNSMFQLDSSVPSFYGQQPQQNQAIHNNIPNTNGTHCSVEPLDSSLCHNNIGMHLPFLNEFNEGGSQYPLAFSEDDLNTVVQMGFGQTSNRNTPIHSPSFNGSNQSTQMKIEL*