Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787460 | XP_003617666.2 | 96.729 | 428 | 4 | 1 | 1 | 428 | 1 | 418 | 0.0 | 822 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787460 | sp|Q42545|FTSZ1_ARATH | 83.202 | 381 | 51 | 3 | 50 | 428 | 64 | 433 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787460 | Q5JZT9 | 96.729 | 428 | 4 | 1 | 1 | 428 | 1 | 418 | 0.0 | 822 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0620130 | Msa0787460 | 0.823762 | 1.163010e-53 | -8.615850e-47 |
| Msa0659920 | Msa0787460 | 0.813937 | 1.987959e-51 | -8.615850e-47 |
| Msa0706580 | Msa0787460 | 0.800185 | 1.623031e-48 | -8.615850e-47 |
| Msa0787460 | Msa1033120 | 0.801596 | 8.355030e-49 | -8.615850e-47 |
| Msa0787460 | Msa1045440 | 0.805199 | 1.498344e-49 | -8.615850e-47 |
| Msa0787460 | Msa1067430 | 0.800292 | 1.543544e-48 | -8.615850e-47 |
| Msa0787460 | Msa1208750 | 0.827327 | 1.663124e-54 | -8.615850e-47 |
| Msa0787460 | Msa1415250 | 0.804455 | 2.142140e-49 | -8.615850e-47 |
| Msa0170440 | Msa0787460 | 0.800496 | 1.402703e-48 | -8.615850e-47 |
| Msa0399180 | Msa0787460 | 0.814954 | 1.184433e-51 | -8.615850e-47 |
| Msa0247310 | Msa0787460 | 0.803464 | 3.442347e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787460 | MtrunA17_Chr5g0445051 | 96.503 | 429 | 4 | 2 | 1 | 428 | 1 | 419 | 0.0 | 818 |
| Msa0787460 | MtrunA17_Chr3g0100581 | 82.701 | 422 | 58 | 5 | 9 | 428 | 5 | 413 | 0.0 | 606 |
| Msa0787460 | MtrunA17_Chr1g0178661 | 56.721 | 305 | 120 | 2 | 73 | 375 | 136 | 430 | 9.20e-108 | 327 |
| Msa0787460 | MtrunA17_Chr7g0266231 | 56.721 | 305 | 120 | 2 | 73 | 375 | 149 | 443 | 6.19e-107 | 325 |
| Msa0787460 | MtrunA17_Chr1g0176351 | 47.368 | 133 | 62 | 4 | 16 | 145 | 53 | 180 | 3.60e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787460 | AT5G55280.1 | 83.202 | 381 | 51 | 3 | 50 | 428 | 64 | 433 | 0.0 | 568 |
| Msa0787460 | AT3G52750.3 | 54.032 | 372 | 150 | 7 | 14 | 375 | 62 | 422 | 1.07e-111 | 337 |
| Msa0787460 | AT3G52750.2 | 54.032 | 372 | 150 | 7 | 14 | 375 | 62 | 422 | 1.07e-111 | 337 |
| Msa0787460 | AT3G52750.1 | 54.032 | 372 | 150 | 7 | 14 | 375 | 62 | 422 | 1.07e-111 | 337 |
| Msa0787460 | AT2G36250.4 | 57.188 | 320 | 125 | 2 | 58 | 375 | 36 | 345 | 1.81e-109 | 328 |
| Msa0787460 | AT2G36250.2 | 57.188 | 320 | 125 | 2 | 58 | 375 | 117 | 426 | 7.19e-109 | 329 |
| Msa0787460 | AT2G36250.3 | 57.188 | 320 | 125 | 2 | 58 | 375 | 117 | 426 | 7.19e-109 | 329 |
| Msa0787460 | AT2G36250.1 | 57.188 | 320 | 125 | 2 | 58 | 375 | 117 | 426 | 7.19e-109 | 329 |
| Msa0787460 | AT3G52750.4 | 53.952 | 291 | 113 | 7 | 14 | 294 | 62 | 341 | 1.13e-78 | 248 |
Find 113 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTGCCAATATTATATT+TGG | 0.100420 | 5_2:-73196188 | Msa0787460:CDS |
| ACACCAAATCTGATCCTTTA+AGG | 0.168325 | 5_2:+73198818 | None:intergenic |
| GCTACTTTGGCTCCTTTAAT+TGG | 0.187864 | 5_2:-73196778 | Msa0787460:CDS |
| GCTGAAAACCCTATTAAAAT+TGG | 0.229125 | 5_2:-73199043 | Msa0787460:CDS |
| GCTATTGCTGATGCCCTTAA+AGG | 0.231321 | 5_2:-73198832 | Msa0787460:CDS |
| TACTGGCGGGAATCCACTTT+TGG | 0.236726 | 5_2:-73198884 | Msa0787460:CDS |
| CATGATTGGTAGTGGTTTAC+AGG | 0.255127 | 5_2:-73200034 | Msa0787460:intron |
| CAATAAAATGATAATTAAAA+AGG | 0.269212 | 5_2:+73195916 | None:intergenic |
| TGAATAGATGATCCAATTAA+AGG | 0.273013 | 5_2:+73196766 | None:intergenic |
| AAGATTAAGGTCGTTGGAAT+TGG | 0.290511 | 5_2:-73200084 | Msa0787460:CDS |
| CAACGTTACAGTCGTCGTTT+TGG | 0.299805 | 5_2:-73200144 | Msa0787460:CDS |
| TTGAGATGCCTTTCTTCATA+TGG | 0.307830 | 5_2:-73195850 | Msa0787460:three_prime_UTR |
| TTTACAGGTTGTTACTAGTT+TGG | 0.308091 | 5_2:-73196216 | Msa0787460:intron |
| TGTTGATAACGCTAAGATTA+AGG | 0.323415 | 5_2:-73200097 | Msa0787460:CDS |
| TTCATAACAGCTGGGATGGG+TGG | 0.331608 | 5_2:-73198796 | Msa0787460:CDS |
| GGGGTAGTGTATAATATTAC+TGG | 0.350140 | 5_2:-73196733 | Msa0787460:CDS |
| AGATTAAGGTCGTTGGAATT+GGG | 0.354685 | 5_2:-73200083 | Msa0787460:CDS |
| ACGACTGTAACGTTGCGTTT+TGG | 0.355509 | 5_2:+73200152 | None:intergenic |
| AACAGCTCCAAATATAATAT+TGG | 0.367048 | 5_2:+73196181 | None:intergenic |
| TTTGATATTTGAGCCACAAC+TGG | 0.375367 | 5_2:+73198751 | None:intergenic |
| GAGCTTCTGACTCGTGGATT+AGG | 0.377707 | 5_2:-73199019 | Msa0787460:intron |
| GAATGTGAGAGAAGCTTGTT+TGG | 0.378996 | 5_2:+73200228 | None:intergenic |
| AGCAGAAGAAGCAGCAGAAC+AGG | 0.382305 | 5_2:-73196800 | Msa0787460:CDS |
| TGCCCTTAAAGGATCAGATT+TGG | 0.410169 | 5_2:-73198821 | Msa0787460:CDS |
| TTACCCTGCAGGAAGTCAAC+AGG | 0.422777 | 5_2:-73196699 | Msa0787460:CDS |
| ACTACCAATCATGCGGTTAA+CGG | 0.432044 | 5_2:+73200044 | None:intergenic |
| AGCAGCAGAACAGGCTACTT+TGG | 0.434800 | 5_2:-73196791 | Msa0787460:CDS |
| GATTTGGTGTTCATAACAGC+TGG | 0.436980 | 5_2:-73198805 | Msa0787460:CDS |
| TGACGAGCAGATGCCACTCC+AGG | 0.440624 | 5_2:-73198468 | Msa0787460:CDS |
| ATGTCAAGCAGACGATCATT+TGG | 0.443168 | 5_2:+73198494 | None:intergenic |
| TCATAACAGCTGGGATGGGT+GGG | 0.443818 | 5_2:-73198795 | Msa0787460:CDS |
| CATAACAGCTGGGATGGGTG+GGG | 0.445201 | 5_2:-73198794 | Msa0787460:CDS |
| TCAAGAAGCTTAGCAGCCCT+TGG | 0.447912 | 5_2:+73196071 | None:intergenic |
| TGTGTGTTCTTTCAGATACC+TGG | 0.451298 | 5_2:-73196916 | Msa0787460:intron |
| AGCCACAACTGGGGCAGCAC+CGG | 0.454881 | 5_2:+73198762 | None:intergenic |
| CTGAAATTCCCTGAACTCCT+TGG | 0.456416 | 5_2:+73198414 | None:intergenic |
| CTGCAAGACGAAAAGCATCC+TGG | 0.457577 | 5_2:+73198450 | None:intergenic |
| CACCAAATCTGATCCTTTAA+GGG | 0.462114 | 5_2:+73198819 | None:intergenic |
| AATGCCGTTAACCGCATGAT+TGG | 0.465096 | 5_2:-73200048 | Msa0787460:CDS |
| AGGACGTAAAAGATCCTTGC+AGG | 0.466429 | 5_2:-73198677 | Msa0787460:CDS |
| TTTGAGGACTTGAGGGGAGC+GGG | 0.475415 | 5_2:+73196014 | None:intergenic |
| GGAAGTCAACAGGGTATCTC+AGG | 0.480783 | 5_2:-73196689 | Msa0787460:intron |
| GTTCTGCTGCTTCTTCTGCT+CGG | 0.482688 | 5_2:+73196803 | None:intergenic |
| AGATAAGTTTGAGGACTTGA+GGG | 0.484578 | 5_2:+73196007 | None:intergenic |
| GCAGCTTGTTCGCCCAAAAG+TGG | 0.485411 | 5_2:+73198871 | None:intergenic |
| AACGCTAAGATTAAGGTCGT+TGG | 0.492712 | 5_2:-73200090 | Msa0787460:CDS |
| TCATCTATTCAATCAGCCAC+TGG | 0.493122 | 5_2:-73196754 | Msa0787460:CDS |
| AACTTTGGAAGATAAGTTTG+AGG | 0.493944 | 5_2:+73195998 | None:intergenic |
| GTCCGGTGCTGCCCCAGTTG+TGG | 0.494437 | 5_2:-73198764 | Msa0787460:CDS |
| TACATAAACCATATGAAGAA+AGG | 0.497925 | 5_2:+73195842 | None:intergenic |
| GTTAACCGCATGATTGGTAG+TGG | 0.501522 | 5_2:-73200042 | Msa0787460:CDS |
| CATCTATTCAATCAGCCACT+GGG | 0.506019 | 5_2:-73196753 | Msa0787460:CDS |
| GTGTTCATAACAGCTGGGAT+GGG | 0.506181 | 5_2:-73198799 | Msa0787460:CDS |
| ATACCCTGTTGACTTCCTGC+AGG | 0.506393 | 5_2:+73196695 | None:intergenic |
| GCTTCTTGACAAAGTGGCCG+AGG | 0.517881 | 5_2:-73196057 | Msa0787460:CDS |
| TTGATATTTGAGCCACAACT+GGG | 0.519459 | 5_2:+73198752 | None:intergenic |
| AGACTTCTATGCAATTAATA+CGG | 0.522331 | 5_2:-73199092 | Msa0787460:CDS |
| AAGATAAGTTTGAGGACTTG+AGG | 0.523933 | 5_2:+73196006 | None:intergenic |
| ATAACAGCTGGGATGGGTGG+GGG | 0.529972 | 5_2:-73198793 | Msa0787460:CDS |
| GACTCTGGTACTGCAATGCT+CGG | 0.530970 | 5_2:-73196850 | Msa0787460:CDS |
| AAATCCACATTCACAAGTCC+AGG | 0.531100 | 5_2:+73196898 | None:intergenic |
| GATTAAGGTCGTTGGAATTG+GGG | 0.533391 | 5_2:-73200082 | Msa0787460:CDS |
| TTACGTCCTTCAAAACTGAA+AGG | 0.535553 | 5_2:+73198691 | None:intergenic |
| CGTAAAAGATCCTTGCAGGC+AGG | 0.538842 | 5_2:-73198673 | Msa0787460:CDS |
| ATTGGAGAGCTTCTGACTCG+TGG | 0.542831 | 5_2:-73199025 | Msa0787460:CDS |
| ATTAAGGTCGTTGGAATTGG+GGG | 0.543385 | 5_2:-73200081 | Msa0787460:CDS |
| AAGTGGATAGTGATGAATTG+TGG | 0.546880 | 5_2:+73200196 | None:intergenic |
| CACGTGACTATCATCGCCAC+TGG | 0.547688 | 5_2:-73196131 | Msa0787460:CDS |
| GGTGTTCATAACAGCTGGGA+TGG | 0.553850 | 5_2:-73198800 | Msa0787460:CDS |
| CGGTGCTCTAGATTCAACTT+TGG | 0.558458 | 5_2:+73195983 | None:intergenic |
| AAGAGAAACTGAAGGTGAAG+TGG | 0.559104 | 5_2:+73200179 | None:intergenic |
| GGTACTGCAATGCTCGGAGT+AGG | 0.561514 | 5_2:-73196844 | Msa0787460:CDS |
| GTTTGAGGACTTGAGGGGAG+CGG | 0.564246 | 5_2:+73196013 | None:intergenic |
| AGGAAAGGACATTACCCTGC+AGG | 0.569822 | 5_2:-73196710 | Msa0787460:CDS |
| AGTAGGGACACCTGCCTGCA+AGG | 0.570451 | 5_2:+73198663 | None:intergenic |
| AGAAGCTGCTAACAGATCCA+AGG | 0.573525 | 5_2:-73196088 | Msa0787460:CDS |
| CTCGGAGTAGGTGTTTCCTC+CGG | 0.575016 | 5_2:-73196832 | Msa0787460:CDS |
| GTTGTTGATGATCGTTACAC+CGG | 0.583436 | 5_2:-73196161 | Msa0787460:CDS |
| ATAGTGATGCAGGTACTGGC+GGG | 0.584393 | 5_2:-73198897 | Msa0787460:intron |
| CTGGTCTCAAACAACGAGTA+GGG | 0.584437 | 5_2:+73198647 | None:intergenic |
| TGTGGCTCAAATATCAAAAG+AGG | 0.584777 | 5_2:-73198746 | Msa0787460:CDS |
| GTATAATATTACTGGAGGAA+AGG | 0.586856 | 5_2:-73196725 | Msa0787460:CDS |
| TAGTGATGAATTGTGGAAGA+GGG | 0.592094 | 5_2:+73200203 | None:intergenic |
| ACTGGTCTCAAACAACGAGT+AGG | 0.592838 | 5_2:+73198646 | None:intergenic |
| ATAGTGATGAATTGTGGAAG+AGG | 0.597745 | 5_2:+73200202 | None:intergenic |
| TTGTTGATGATCGTTACACC+GGG | 0.600097 | 5_2:-73196160 | Msa0787460:CDS |
| GATACCTGGACTTGTGAATG+TGG | 0.601582 | 5_2:-73196902 | Msa0787460:CDS |
| GCTCAAATATCAAAAGAGGC+AGG | 0.602252 | 5_2:-73198742 | Msa0787460:CDS |
| CTTCTTGACAAAGTGGCCGA+GGG | 0.602545 | 5_2:-73196056 | Msa0787460:CDS |
| GATAGTGATGCAGGTACTGG+CGG | 0.603838 | 5_2:-73198898 | Msa0787460:intron |
| CCAAATATAATATTGGCAGA+AGG | 0.604139 | 5_2:+73196188 | None:intergenic |
| TGCTAAGCTTCTTGACAAAG+TGG | 0.604517 | 5_2:-73196063 | Msa0787460:CDS |
| GATAGTCACGTGAATCTCCC+CGG | 0.604903 | 5_2:+73196142 | None:intergenic |
| ATTTGGTGTTCATAACAGCT+GGG | 0.611725 | 5_2:-73198804 | Msa0787460:CDS |
| TTTGGGCGAACAAGCTGCGG+AGG | 0.616087 | 5_2:-73198866 | Msa0787460:CDS |
| AAAGCTGTGATGAAAGACTC+TGG | 0.621028 | 5_2:-73196865 | Msa0787460:CDS |
| TACCCTGTTGACTTCCTGCA+GGG | 0.624886 | 5_2:+73196696 | None:intergenic |
| AGACGAAAAGCATCCTGGAG+TGG | 0.632007 | 5_2:+73198455 | None:intergenic |
| GATAAGTTTGAGGACTTGAG+GGG | 0.636208 | 5_2:+73196008 | None:intergenic |
| TACCCTGCAGGAAGTCAACA+GGG | 0.647460 | 5_2:-73196698 | Msa0787460:CDS |
| GAGGCAGGTTACTTGACCGT+GGG | 0.648556 | 5_2:-73198727 | Msa0787460:CDS |
| GAAGCTGCTAACAGATCCAA+GGG | 0.650445 | 5_2:-73196087 | Msa0787460:CDS |
| AGAGGCAGGTTACTTGACCG+TGG | 0.660274 | 5_2:-73198728 | Msa0787460:CDS |
| GTAGTGTATAATATTACTGG+AGG | 0.664739 | 5_2:-73196730 | Msa0787460:CDS |
| AAAAGACTGCGAAAAGCCAG+TGG | 0.669333 | 5_2:+73196115 | None:intergenic |
| AGGATATGTAACAACGCCCA+CGG | 0.675492 | 5_2:+73198711 | None:intergenic |
| TTGGGGTAAAGAGAAACTGA+AGG | 0.676271 | 5_2:+73200171 | None:intergenic |
| GCTACATACACTTAAGCACA+TGG | 0.683056 | 5_2:+73195818 | None:intergenic |
| GTAAACCACTACCAATCATG+CGG | 0.685390 | 5_2:+73200037 | None:intergenic |
| ATCTATTCAATCAGCCACTG+GGG | 0.693952 | 5_2:-73196752 | Msa0787460:CDS |
| TGATATTTGAGCCACAACTG+GGG | 0.715087 | 5_2:+73198753 | None:intergenic |
| AATATTATACACTACCCCAG+TGG | 0.770436 | 5_2:+73196738 | None:intergenic |
| TGTTGATGATCGTTACACCG+GGG | 0.787369 | 5_2:-73196159 | Msa0787460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTATATATTATTTTAATG+AGG | - | chr5_2:73199164-73199183 | Msa0787460:intron | 10.0% |
| !! | CAATAAAATGATAATTAAAA+AGG | + | chr5_2:73200255-73200274 | None:intergenic | 10.0% |
| !!! | ATTTTTGTTATCTTGAAAAT+GGG | + | chr5_2:73195886-73195905 | None:intergenic | 15.0% |
| !! | AATACTATTGTTCAATAAAA+TGG | - | chr5_2:73197574-73197593 | Msa0787460:intron | 15.0% |
| !! | AACTCTTAATCTAATAAAAT+TGG | - | chr5_2:73198064-73198083 | Msa0787460:intron | 15.0% |
| !!! | ATTCTAAATTAAAAAAGTAC+AGG | + | chr5_2:73198507-73198526 | None:intergenic | 15.0% |
| !!! | TTTAGAATGAAACTTTATTA+TGG | - | chr5_2:73198519-73198538 | Msa0787460:CDS | 15.0% |
| !! | GTTAAGATTAAGAATTTAAA+TGG | - | chr5_2:73198572-73198591 | Msa0787460:intron | 15.0% |
| !!! | TTATTGGTTAAAATTCATTT+CGG | - | chr5_2:73199023-73199042 | Msa0787460:CDS | 15.0% |
| !!! | CATTTTTGTTATCTTGAAAA+TGG | + | chr5_2:73195887-73195906 | None:intergenic | 20.0% |
| !!! | CATTTTCAAGATAACAAAAA+TGG | - | chr5_2:73195885-73195904 | Msa0787460:three_prime_UTR | 20.0% |
| !! | CTTTATGGAAGAAAAATAAA+GGG | + | chr5_2:73196173-73196192 | None:intergenic | 20.0% |
| !! | ACTTTATGGAAGAAAAATAA+AGG | + | chr5_2:73196174-73196193 | None:intergenic | 20.0% |
| !! | AGGTAAAAATGATAACTTTA+TGG | + | chr5_2:73196188-73196207 | None:intergenic | 20.0% |
| !! | CATTAACAATGCTATAAATT+GGG | + | chr5_2:73196232-73196251 | None:intergenic | 20.0% |
| !! | CAATTTATAGCATTGTTAAT+GGG | - | chr5_2:73196231-73196250 | Msa0787460:intron | 20.0% |
| !!! | CATAGTTTTATTCAGAAATT+TGG | - | chr5_2:73196369-73196388 | Msa0787460:intron | 20.0% |
| !! | AAACTTCTACAATAATATCA+CGG | + | chr5_2:73196942-73196961 | None:intergenic | 20.0% |
| !! | ATCAATTTCTCAATAAAACT+AGG | + | chr5_2:73197220-73197239 | None:intergenic | 20.0% |
| !! | TTTATTGAGAAATTGATTGA+TGG | - | chr5_2:73197223-73197242 | Msa0787460:intron | 20.0% |
| !!! | ATTCATTTGATATTTTGTTC+AGG | - | chr5_2:73197598-73197617 | Msa0787460:intron | 20.0% |
| !!! | TATTCTATTCTTCTTTTTCA+TGG | - | chr5_2:73197810-73197829 | Msa0787460:intron | 20.0% |
| !!! | AGTCTTATATTACTATTGTT+AGG | - | chr5_2:73198453-73198472 | Msa0787460:CDS | 20.0% |
| !! | AATAATATATACATGAGTTG+AGG | + | chr5_2:73199158-73199177 | None:intergenic | 20.0% |
| !!! | ATTATTTTAATGAGGTAAAC+TGG | - | chr5_2:73199172-73199191 | Msa0787460:intron | 20.0% |
| !!! | TCTTTTTGGCTTTTTTGTTA+GGG | + | chr5_2:73195860-73195879 | None:intergenic | 25.0% |
| !!! | TTCTTTTTGGCTTTTTTGTT+AGG | + | chr5_2:73195861-73195880 | None:intergenic | 25.0% |
| !!! | TTGAAAATGGGTTTTCTTTT+TGG | + | chr5_2:73195874-73195893 | None:intergenic | 25.0% |
| ! | CCATTAACAATGCTATAAAT+TGG | + | chr5_2:73196233-73196252 | None:intergenic | 25.0% |
| ! | CCAATTTATAGCATTGTTAA+TGG | - | chr5_2:73196230-73196249 | Msa0787460:intron | 25.0% |
| !! | AAATTATTGTTGTTGTTGAC+TGG | - | chr5_2:73196321-73196340 | Msa0787460:intron | 25.0% |
| !! | TTTTATTCAGAAATTTGGAC+TGG | - | chr5_2:73196374-73196393 | Msa0787460:intron | 25.0% |
| !!! | TTATTTTATTCTCGTGTTGT+TGG | + | chr5_2:73196437-73196456 | None:intergenic | 25.0% |
| ! | ATCACCTATAGTAAAAAAGA+TGG | - | chr5_2:73196550-73196569 | Msa0787460:intron | 25.0% |
| !! | AGATTTAGAGTTTAATGAGT+TGG | - | chr5_2:73196715-73196734 | Msa0787460:CDS | 25.0% |
| ! | TGGTTTATGGTAGAATATTA+TGG | - | chr5_2:73196747-73196766 | Msa0787460:CDS | 25.0% |
| ! | TAATAAATAGTACCACTAGA+AGG | + | chr5_2:73196847-73196866 | None:intergenic | 25.0% |
| !!! | AATACTAATGTTGGTTTCTT+CGG | - | chr5_2:73197031-73197050 | Msa0787460:intron | 25.0% |
| ! | AGACTTCTATGCAATTAATA+CGG | - | chr5_2:73197076-73197095 | Msa0787460:intron | 25.0% |
| ! | ATTTCTCAATAAAACTAGGA+AGG | + | chr5_2:73197216-73197235 | None:intergenic | 25.0% |
| ! | ATCAAGCAATTTGAATCAAA+AGG | + | chr5_2:73197253-73197272 | None:intergenic | 25.0% |
| !!! | ATTTCTTTGAAGCTTTTCAA+TGG | + | chr5_2:73197633-73197652 | None:intergenic | 25.0% |
| !!! | AGAATCTTTTCAAGTCTAAT+GGG | + | chr5_2:73197868-73197887 | None:intergenic | 25.0% |
| !!! | AAGAATCTTTTCAAGTCTAA+TGG | + | chr5_2:73197869-73197888 | None:intergenic | 25.0% |
| ! | ATATTACTATTGTTAGGTGT+TGG | - | chr5_2:73198459-73198478 | Msa0787460:CDS | 25.0% |
| ! | TATTACTATTGTTAGGTGTT+GGG | - | chr5_2:73198460-73198479 | Msa0787460:CDS | 25.0% |
| ! | GTTGATGTATAATGCATTTA+CGG | - | chr5_2:73198594-73198613 | Msa0787460:intron | 25.0% |
| ! | TGAATAGATGATCCAATTAA+AGG | + | chr5_2:73199405-73199424 | None:intergenic | 25.0% |
| ! | GATTTAGTATTAATGACTTC+AGG | - | chr5_2:73199617-73199636 | Msa0787460:intron | 25.0% |
| !!! | CGTAATTTTGATTAGATAGA+AGG | + | chr5_2:73199708-73199727 | None:intergenic | 25.0% |
| ! | TTTCTCTTCAAGAAAGTTAT+TGG | + | chr5_2:73199738-73199757 | None:intergenic | 25.0% |
| ! | ATAACTTTCTTGAAGAGAAA+AGG | - | chr5_2:73199738-73199757 | Msa0787460:intron | 25.0% |
| ! | TAACTTTCTTGAAGAGAAAA+GGG | - | chr5_2:73199739-73199758 | Msa0787460:intron | 25.0% |
| ! | GGAAAAAAATAGATCCTTTA+GGG | + | chr5_2:73199780-73199799 | None:intergenic | 25.0% |
| ! | AGGAAAAAAATAGATCCTTT+AGG | + | chr5_2:73199781-73199800 | None:intergenic | 25.0% |
| ! | AACAGCTCCAAATATAATAT+TGG | + | chr5_2:73199990-73200009 | None:intergenic | 25.0% |
| ! | TACATAAACCATATGAAGAA+AGG | + | chr5_2:73200329-73200348 | None:intergenic | 25.0% |
| !! | TGTTGATAACGCTAAGATTA+AGG | - | chr5_2:73196071-73196090 | Msa0787460:CDS | 30.0% |
| ! | TCTAAAATAAGTGAAGGGAA+AGG | + | chr5_2:73196208-73196227 | None:intergenic | 30.0% |
| !! | TGGGTTCTAAAATAAGTGAA+GGG | + | chr5_2:73196213-73196232 | None:intergenic | 30.0% |
| !! | TTGGGTTCTAAAATAAGTGA+AGG | + | chr5_2:73196214-73196233 | None:intergenic | 30.0% |
| AGCTGTAAATGTGATAACTT+TGG | - | chr5_2:73196284-73196303 | Msa0787460:intron | 30.0% | |
| ACCTATAGTAAAAAAGATGG+TGG | - | chr5_2:73196553-73196572 | Msa0787460:intron | 30.0% | |
| !!! | TCCACCATCTTTTTTACTAT+AGG | + | chr5_2:73196557-73196576 | None:intergenic | 30.0% |
| ATCCTTACTACAAAATCCAT+AGG | + | chr5_2:73196617-73196636 | None:intergenic | 30.0% | |
| !!! | CAATTTTAACTTTGTTCGCA+TGG | + | chr5_2:73196912-73196931 | None:intergenic | 30.0% |
| AACATTAGTATTCACAAGCA+AGG | + | chr5_2:73197023-73197042 | None:intergenic | 30.0% | |
| TTGCTTGTGAATACTAATGT+TGG | - | chr5_2:73197022-73197041 | Msa0787460:intron | 30.0% | |
| TTCGGCTTATATTTGTAATC+AGG | - | chr5_2:73197049-73197068 | Msa0787460:intron | 30.0% | |
| TCGGCTTATATTTGTAATCA+GGG | - | chr5_2:73197050-73197069 | Msa0787460:intron | 30.0% | |
| GCTGAAAACCCTATTAAAAT+TGG | - | chr5_2:73197125-73197144 | Msa0787460:intron | 30.0% | |
| !! | GAAGCTCTCCAATTTTAATA+GGG | + | chr5_2:73197136-73197155 | None:intergenic | 30.0% |
| !! | AGAAGCTCTCCAATTTTAAT+AGG | + | chr5_2:73197137-73197156 | None:intergenic | 30.0% |
| ! | TTGAGAAATTGATTGATGGT+TGG | - | chr5_2:73197227-73197246 | Msa0787460:intron | 30.0% |
| !! | ACATATCCTTTCAGTTTTGA+AGG | - | chr5_2:73197471-73197490 | Msa0787460:intron | 30.0% |
| GAAAATAACTCAGTAATGAC+TGG | + | chr5_2:73197543-73197562 | None:intergenic | 30.0% | |
| ATTTAGACAAAAGGACTACA+CGG | + | chr5_2:73197942-73197961 | None:intergenic | 30.0% | |
| ! | AAATTTGGTAACTAATAGGG+AGG | + | chr5_2:73198223-73198242 | None:intergenic | 30.0% |
| ! | CGGAAATTTGGTAACTAATA+GGG | + | chr5_2:73198226-73198245 | None:intergenic | 30.0% |
| ! | TCGGAAATTTGGTAACTAAT+AGG | + | chr5_2:73198227-73198246 | None:intergenic | 30.0% |
| ATTGTTAAATTGTCCCACAT+CGG | + | chr5_2:73198246-73198265 | None:intergenic | 30.0% | |
| AATGAACTTACACAACTAGA+GGG | - | chr5_2:73198287-73198306 | Msa0787460:intron | 30.0% | |
| CTAATGTTAAATTTCCACAG+AGG | + | chr5_2:73198338-73198357 | None:intergenic | 30.0% | |
| ATGTCATGTAGAATAATGCT+AGG | - | chr5_2:73198633-73198652 | Msa0787460:intron | 30.0% | |
| !!! | AGTTTTTAAGTAGGATCAGT+AGG | - | chr5_2:73198676-73198695 | Msa0787460:CDS | 30.0% |
| !!! | ACTTTCTCTGTTTTTTTGCT+TGG | + | chr5_2:73198812-73198831 | None:intergenic | 30.0% |
| CAAAAAAACAGAGAAAGTAG+AGG | - | chr5_2:73198814-73198833 | Msa0787460:CDS | 30.0% | |
| AAGAAAAACAGAGCAAACAA+AGG | - | chr5_2:73198854-73198873 | Msa0787460:CDS | 30.0% | |
| ! | AACCAATAAAAGAGTGTGTT+GGG | + | chr5_2:73199012-73199031 | None:intergenic | 30.0% |
| ! | TAACCAATAAAAGAGTGTGT+TGG | + | chr5_2:73199013-73199032 | None:intergenic | 30.0% |
| GAGTTCCACTAAATTTATGT+GGG | + | chr5_2:73199069-73199088 | None:intergenic | 30.0% | |
| TGAGTTCCACTAAATTTATG+TGG | + | chr5_2:73199070-73199089 | None:intergenic | 30.0% | |
| ! | ACCAATAGAAAAAAGTGTGT+TGG | - | chr5_2:73199101-73199120 | Msa0787460:intron | 30.0% |
| !!! | ACCAACACACTTTTTTCTAT+TGG | + | chr5_2:73199105-73199124 | None:intergenic | 30.0% |
| ! | TAAGTTAACTCGTTTTGCAT+AGG | + | chr5_2:73199207-73199226 | None:intergenic | 30.0% |
| GTAGTGTATAATATTACTGG+AGG | - | chr5_2:73199438-73199457 | Msa0787460:intron | 30.0% | |
| GTATAATATTACTGGAGGAA+AGG | - | chr5_2:73199443-73199462 | Msa0787460:intron | 30.0% | |
| TCACAGAATCAAAGTGTAAA+AGG | + | chr5_2:73199551-73199570 | None:intergenic | 30.0% | |
| ACTTTGATTCTGTGAATTTG+TGG | - | chr5_2:73199556-73199575 | Msa0787460:intron | 30.0% | |
| TATATCTATACCATCCCTAA+AGG | - | chr5_2:73199763-73199782 | Msa0787460:intron | 30.0% | |
| ! | AAAAATAGATCCTTTAGGGA+TGG | + | chr5_2:73199776-73199795 | None:intergenic | 30.0% |
| GACATGTATAATAAAGAGAG+AGG | + | chr5_2:73199911-73199930 | None:intergenic | 30.0% | |
| ! | TCAATGCGTGTAATTTTTAC+AGG | - | chr5_2:73199937-73199956 | Msa0787460:intron | 30.0% |
| TTTACAGGTTGTTACTAGTT+TGG | - | chr5_2:73199952-73199971 | Msa0787460:intron | 30.0% | |
| CCAAATATAATATTGGCAGA+AGG | + | chr5_2:73199983-73200002 | None:intergenic | 30.0% | |
| CCTTCTGCCAATATTATATT+TGG | - | chr5_2:73199980-73199999 | Msa0787460:intron | 30.0% | |
| ! | AACTTTGGAAGATAAGTTTG+AGG | + | chr5_2:73200173-73200192 | None:intergenic | 30.0% |
| ACTAAAAAAAGAGCTTTCGT+GGG | + | chr5_2:73200213-73200232 | None:intergenic | 30.0% | |
| AACTAAAAAAAGAGCTTTCG+TGG | + | chr5_2:73200214-73200233 | None:intergenic | 30.0% | |
| !!! | TTTGGTTTTGTGAGAGAAGA+AGG | + | chr5_2:73195925-73195944 | None:intergenic | 35.0% |
| TAGTGATGAATTGTGGAAGA+GGG | + | chr5_2:73195968-73195987 | None:intergenic | 35.0% | |
| ATAGTGATGAATTGTGGAAG+AGG | + | chr5_2:73195969-73195988 | None:intergenic | 35.0% | |
| AAGTGGATAGTGATGAATTG+TGG | + | chr5_2:73195975-73195994 | None:intergenic | 35.0% | |
| AAGATTAAGGTCGTTGGAAT+TGG | - | chr5_2:73196084-73196103 | Msa0787460:CDS | 35.0% | |
| AGATTAAGGTCGTTGGAATT+GGG | - | chr5_2:73196085-73196104 | Msa0787460:CDS | 35.0% | |
| ATATGTGTTGTGAGACTAGA+TGG | - | chr5_2:73196486-73196505 | Msa0787460:intron | 35.0% | |
| TATGTGTTGTGAGACTAGAT+GGG | - | chr5_2:73196487-73196506 | Msa0787460:intron | 35.0% | |
| !! | GTAAAAAAGATGGTGGAAAC+TGG | - | chr5_2:73196560-73196579 | Msa0787460:intron | 35.0% |
| AGTAAGGATAGTAGATCGTA+TGG | - | chr5_2:73196628-73196647 | Msa0787460:intron | 35.0% | |
| ATGGAGGATAGTTAATTCAC+TGG | - | chr5_2:73196647-73196666 | Msa0787460:intron | 35.0% | |
| ! | TAATGAGTTGGATCGAAATC+TGG | - | chr5_2:73196727-73196746 | Msa0787460:CDS | 35.0% |
| ! | TTGGATCGAAATCTGGTTTA+TGG | - | chr5_2:73196734-73196753 | Msa0787460:CDS | 35.0% |
| ! | TTGATAACCTTTCCTTCTAG+TGG | - | chr5_2:73196832-73196851 | Msa0787460:CDS | 35.0% |
| AATAGTACCACTAGAAGGAA+AGG | + | chr5_2:73196842-73196861 | None:intergenic | 35.0% | |
| !! | AAATTGCTTGATAGTGATGC+AGG | - | chr5_2:73197261-73197280 | Msa0787460:intron | 35.0% |
| CACCAAATCTGATCCTTTAA+GGG | + | chr5_2:73197352-73197371 | None:intergenic | 35.0% | |
| ACACCAAATCTGATCCTTTA+AGG | + | chr5_2:73197353-73197372 | None:intergenic | 35.0% | |
| !! | ATTTGGTGTTCATAACAGCT+GGG | - | chr5_2:73197364-73197383 | Msa0787460:intron | 35.0% |
| TTGATATTTGAGCCACAACT+GGG | + | chr5_2:73197419-73197438 | None:intergenic | 35.0% | |
| TTTGATATTTGAGCCACAAC+TGG | + | chr5_2:73197420-73197439 | None:intergenic | 35.0% | |
| TGTGGCTCAAATATCAAAAG+AGG | - | chr5_2:73197422-73197441 | Msa0787460:intron | 35.0% | |
| TTACGTCCTTCAAAACTGAA+AGG | + | chr5_2:73197480-73197499 | None:intergenic | 35.0% | |
| TCAAGTCCAATTATGAAGAG+TGG | + | chr5_2:73197900-73197919 | None:intergenic | 35.0% | |
| TTGGACTTGAACTTATGTCA+AGG | - | chr5_2:73197910-73197929 | Msa0787460:intron | 35.0% | |
| TGGACTTGAACTTATGTCAA+GGG | - | chr5_2:73197911-73197930 | Msa0787460:intron | 35.0% | |
| GGTCACTTGATTTAGACAAA+AGG | + | chr5_2:73197951-73197970 | None:intergenic | 35.0% | |
| GAAATTGCTATGTAAACTCG+AGG | + | chr5_2:73198027-73198046 | None:intergenic | 35.0% | |
| TCATAGGTTATGGGAAACAA+AGG | - | chr5_2:73198123-73198142 | Msa0787460:intron | 35.0% | |
| ! | ATAGTGCACTAATTTTTCCC+TGG | - | chr5_2:73198159-73198178 | Msa0787460:intron | 35.0% |
| TAGTTACCAAATTTCCGATG+TGG | - | chr5_2:73198229-73198248 | Msa0787460:intron | 35.0% | |
| AGTTACCAAATTTCCGATGT+GGG | - | chr5_2:73198230-73198249 | Msa0787460:intron | 35.0% | |
| CAATGAACTTACACAACTAG+AGG | - | chr5_2:73198286-73198305 | Msa0787460:intron | 35.0% | |
| AGTGCAATAGCTTAAACTAG+AGG | - | chr5_2:73198356-73198375 | Msa0787460:intron | 35.0% | |
| GTGCAATAGCTTAAACTAGA+GGG | - | chr5_2:73198357-73198376 | Msa0787460:intron | 35.0% | |
| CCTACTTAAAAACTTGAACC+TGG | + | chr5_2:73198670-73198689 | None:intergenic | 35.0% | |
| !!! | CCAGGTTCAAGTTTTTAAGT+AGG | - | chr5_2:73198667-73198686 | Msa0787460:CDS | 35.0% |
| ACAGAGCAAATAGTGAAAAC+AGG | - | chr5_2:73198782-73198801 | Msa0787460:CDS | 35.0% | |
| CAGAGCAAATAGTGAAAACA+GGG | - | chr5_2:73198783-73198802 | Msa0787460:CDS | 35.0% | |
| AGAGCAAATAGTGAAAACAG+GGG | - | chr5_2:73198784-73198803 | Msa0787460:CDS | 35.0% | |
| AGAAAGTAGAGGAAAAACAG+AGG | - | chr5_2:73198825-73198844 | Msa0787460:CDS | 35.0% | |
| ! | ATCCCAACACACTCTTTTAT+TGG | - | chr5_2:73199007-73199026 | Msa0787460:intron | 35.0% |
| AATATTATACACTACCCCAG+TGG | + | chr5_2:73199433-73199452 | None:intergenic | 35.0% | |
| GGGGTAGTGTATAATATTAC+TGG | - | chr5_2:73199435-73199454 | Msa0787460:intron | 35.0% | |
| CTCTTCAAGAAAGTTATTGG+AGG | + | chr5_2:73199735-73199754 | None:intergenic | 35.0% | |
| GTAGTCTTTCAAGAGCAAAA+TGG | + | chr5_2:73199848-73199867 | None:intergenic | 35.0% | |
| CTACATCCAGTTATCATCAT+TGG | - | chr5_2:73199864-73199883 | Msa0787460:intron | 35.0% | |
| ACAAAGCCAATGATGATAAC+TGG | + | chr5_2:73199873-73199892 | None:intergenic | 35.0% | |
| AGATAAGTTTGAGGACTTGA+GGG | + | chr5_2:73200164-73200183 | None:intergenic | 35.0% | |
| AAGATAAGTTTGAGGACTTG+AGG | + | chr5_2:73200165-73200184 | None:intergenic | 35.0% | |
| TAAAAAAAGAGCTTTCGTGG+GGG | + | chr5_2:73200211-73200230 | None:intergenic | 35.0% | |
| CTAAAAAAAGAGCTTTCGTG+GGG | + | chr5_2:73200212-73200231 | None:intergenic | 35.0% | |
| TTGAGATGCCTTTCTTCATA+TGG | - | chr5_2:73200318-73200337 | Msa0787460:five_prime_UTR | 35.0% | |
| ! | GAATGTGAGAGAAGCTTGTT+TGG | + | chr5_2:73195943-73195962 | None:intergenic | 40.0% |
| AAGAGAAACTGAAGGTGAAG+TGG | + | chr5_2:73195992-73196011 | None:intergenic | 40.0% | |
| TTGGGGTAAAGAGAAACTGA+AGG | + | chr5_2:73196000-73196019 | None:intergenic | 40.0% | |
| !! | AACGTTACAGTCGTCGTTTT+GGG | - | chr5_2:73196025-73196044 | Msa0787460:CDS | 40.0% |
| AACGCTAAGATTAAGGTCGT+TGG | - | chr5_2:73196078-73196097 | Msa0787460:CDS | 40.0% | |
| GATTAAGGTCGTTGGAATTG+GGG | - | chr5_2:73196086-73196105 | Msa0787460:CDS | 40.0% | |
| ATTAAGGTCGTTGGAATTGG+GGG | - | chr5_2:73196087-73196106 | Msa0787460:CDS | 40.0% | |
| ACTACCAATCATGCGGTTAA+CGG | + | chr5_2:73196127-73196146 | None:intergenic | 40.0% | |
| GTAAACCACTACCAATCATG+CGG | + | chr5_2:73196134-73196153 | None:intergenic | 40.0% | |
| !! | CATGATTGGTAGTGGTTTAC+AGG | - | chr5_2:73196134-73196153 | Msa0787460:CDS | 40.0% |
| !! | ATTGGTAGTGGTTTACAGGT+GGG | - | chr5_2:73196138-73196157 | Msa0787460:CDS | 40.0% |
| ! | TGTTGTTGACTGGTTCATTC+TGG | - | chr5_2:73196331-73196350 | Msa0787460:intron | 40.0% |
| !! | TTTGGACTGGCTATGTTGTT+TGG | - | chr5_2:73196387-73196406 | Msa0787460:intron | 40.0% |
| CTACATGTTCAAACCACCTA+AGG | + | chr5_2:73196586-73196605 | None:intergenic | 40.0% | |
| GGTTTGAACATGTAGAGAGA+AGG | - | chr5_2:73196591-73196610 | Msa0787460:intron | 40.0% | |
| ! | GGCCTATGGATTTTGTAGTA+AGG | - | chr5_2:73196612-73196631 | Msa0787460:intron | 40.0% |
| AAGGATAGTAGATCGTATGG+AGG | - | chr5_2:73196631-73196650 | Msa0787460:intron | 40.0% | |
| GAGGATAGTTAATTCACTGG+AGG | - | chr5_2:73196650-73196669 | Msa0787460:intron | 40.0% | |
| ! | AGCCTTATCCTACACTAAGT+GGG | + | chr5_2:73196797-73196816 | None:intergenic | 40.0% |
| ! | AAGCCTTATCCTACACTAAG+TGG | + | chr5_2:73196798-73196817 | None:intergenic | 40.0% |
| AGTGAAAACATGTGCAAGCA+AGG | + | chr5_2:73197186-73197205 | None:intergenic | 40.0% | |
| TGCCCTTAAAGGATCAGATT+TGG | - | chr5_2:73197347-73197366 | Msa0787460:intron | 40.0% | |
| !! | GATTTGGTGTTCATAACAGC+TGG | - | chr5_2:73197363-73197382 | Msa0787460:intron | 40.0% |
| TGATATTTGAGCCACAACTG+GGG | + | chr5_2:73197418-73197437 | None:intergenic | 40.0% | |
| GCTCAAATATCAAAAGAGGC+AGG | - | chr5_2:73197426-73197445 | Msa0787460:intron | 40.0% | |
| ATGTCAAGCAGACGATCATT+TGG | + | chr5_2:73197677-73197696 | None:intergenic | 40.0% | |
| GCATGATTTAAGTCCCTAGT+TGG | - | chr5_2:73197841-73197860 | Msa0787460:intron | 40.0% | |
| AAGTCTAATGGGACCAACTA+GGG | + | chr5_2:73197857-73197876 | None:intergenic | 40.0% | |
| GAGTTGCCACTCTTCATAAT+TGG | - | chr5_2:73197891-73197910 | Msa0787460:intron | 40.0% | |
| TTAACAACCTTGCACACAAC+AGG | + | chr5_2:73197972-73197991 | None:intergenic | 40.0% | |
| CTAGAATCGTACGTGTTCAT+AGG | - | chr5_2:73198107-73198126 | Msa0787460:intron | 40.0% | |
| TCGTACGTGTTCATAGGTTA+TGG | - | chr5_2:73198113-73198132 | Msa0787460:intron | 40.0% | |
| CGTACGTGTTCATAGGTTAT+GGG | - | chr5_2:73198114-73198133 | Msa0787460:intron | 40.0% | |
| GAGGAGGACTCTGTATAAAA+CGG | + | chr5_2:73198204-73198223 | None:intergenic | 40.0% | |
| ! | TTTGGTAACTAATAGGGAGG+AGG | + | chr5_2:73198220-73198239 | None:intergenic | 40.0% |
| ATTGTCCCACATCGGAAATT+TGG | + | chr5_2:73198238-73198257 | None:intergenic | 40.0% | |
| TGTGTAAGTTCATTGTGCGA+GGG | + | chr5_2:73198281-73198300 | None:intergenic | 40.0% | |
| TTGTGTAAGTTCATTGTGCG+AGG | + | chr5_2:73198282-73198301 | None:intergenic | 40.0% | |
| AAATTTCCACAGAGGAAAGC+TGG | + | chr5_2:73198330-73198349 | None:intergenic | 40.0% | |
| AAACTTGAACCTGGCTACAT+TGG | + | chr5_2:73198661-73198680 | None:intergenic | 40.0% | |
| TTTAAGTAGGATCAGTAGGC+TGG | - | chr5_2:73198680-73198699 | Msa0787460:CDS | 40.0% | |
| GTGAAAGATCGTAAACACGA+GGG | - | chr5_2:73198702-73198721 | Msa0787460:CDS | 40.0% | |
| TCGTAACACGATTCGTAAGT+AGG | - | chr5_2:73198725-73198744 | Msa0787460:CDS | 40.0% | |
| GATTCGTAAGTAGGATCAGT+AGG | - | chr5_2:73198734-73198753 | Msa0787460:CDS | 40.0% | |
| GTATTCCTAGCATTGTAGTC+AGG | + | chr5_2:73198973-73198992 | None:intergenic | 40.0% | |
| TCTGAAAGAACACACAACCA+GGG | + | chr5_2:73199248-73199267 | None:intergenic | 40.0% | |
| ATCTGAAAGAACACACAACC+AGG | + | chr5_2:73199249-73199268 | None:intergenic | 40.0% | |
| TGTGTGTTCTTTCAGATACC+TGG | - | chr5_2:73199252-73199271 | Msa0787460:intron | 40.0% | |
| AAATCCACATTCACAAGTCC+AGG | + | chr5_2:73199273-73199292 | None:intergenic | 40.0% | |
| AAAGCTGTGATGAAAGACTC+TGG | - | chr5_2:73199303-73199322 | Msa0787460:intron | 40.0% | |
| ! | TTCTTCTGCTCGGTTTTTAC+CGG | + | chr5_2:73199358-73199377 | None:intergenic | 40.0% |
| ! | GCTACTTTGGCTCCTTTAAT+TGG | - | chr5_2:73199390-73199409 | Msa0787460:intron | 40.0% |
| TCATCTATTCAATCAGCCAC+TGG | - | chr5_2:73199414-73199433 | Msa0787460:intron | 40.0% | |
| CATCTATTCAATCAGCCACT+GGG | - | chr5_2:73199415-73199434 | Msa0787460:intron | 40.0% | |
| ATCTATTCAATCAGCCACTG+GGG | - | chr5_2:73199416-73199435 | Msa0787460:intron | 40.0% | |
| ATATGAAGCACAAACTCGAG+AGG | + | chr5_2:73199801-73199820 | None:intergenic | 40.0% | |
| !! | GTTGTTGATGATCGTTACAC+CGG | - | chr5_2:73200007-73200026 | Msa0787460:intron | 40.0% |
| !! | TTGTTGATGATCGTTACACC+GGG | - | chr5_2:73200008-73200027 | Msa0787460:intron | 40.0% |
| TGCTAAGCTTCTTGACAAAG+TGG | - | chr5_2:73200105-73200124 | Msa0787460:CDS | 40.0% | |
| ! | TGTCTTGCTTTCTTTTCCCT+CGG | + | chr5_2:73200131-73200150 | None:intergenic | 40.0% |
| GATAAGTTTGAGGACTTGAG+GGG | + | chr5_2:73200163-73200182 | None:intergenic | 40.0% | |
| GCTACATACACTTAAGCACA+TGG | + | chr5_2:73200353-73200372 | None:intergenic | 40.0% | |
| ! | GACTGTAACGTTGCGTTTTG+GGG | + | chr5_2:73196017-73196036 | None:intergenic | 45.0% |
| ! | CGACTGTAACGTTGCGTTTT+GGG | + | chr5_2:73196018-73196037 | None:intergenic | 45.0% |
| ! | ACGACTGTAACGTTGCGTTT+TGG | + | chr5_2:73196019-73196038 | None:intergenic | 45.0% |
| ! | CAACGTTACAGTCGTCGTTT+TGG | - | chr5_2:73196024-73196043 | Msa0787460:CDS | 45.0% |
| AATGCCGTTAACCGCATGAT+TGG | - | chr5_2:73196120-73196139 | Msa0787460:CDS | 45.0% | |
| GTTAACCGCATGATTGGTAG+TGG | - | chr5_2:73196126-73196145 | Msa0787460:CDS | 45.0% | |
| !! | GATTGGTAGTGGTTTACAGG+TGG | - | chr5_2:73196137-73196156 | Msa0787460:CDS | 45.0% |
| !! | TTGGTAGTGGTTTACAGGTG+GGG | - | chr5_2:73196139-73196158 | Msa0787460:CDS | 45.0% |
| ! | TGTTGACTGGTTCATTCTGG+TGG | - | chr5_2:73196334-73196353 | Msa0787460:intron | 45.0% |
| ! | ACTGGCTATGTTGTTTGGAG+CGG | - | chr5_2:73196392-73196411 | Msa0787460:intron | 45.0% |
| !! | CTCGTGTTGTTGGTTCTTCA+TGG | + | chr5_2:73196427-73196446 | None:intergenic | 45.0% |
| GACAACACTAGAGAGAGAGT+TGG | - | chr5_2:73196524-73196543 | Msa0787460:intron | 45.0% | |
| ACATGTAGAGAGAAGGCCTA+TGG | - | chr5_2:73196598-73196617 | Msa0787460:intron | 45.0% | |
| AGTTAATTCACTGGAGGCAG+AGG | - | chr5_2:73196656-73196675 | Msa0787460:intron | 45.0% | |
| ACCCCACTTAGTGTAGGATA+AGG | - | chr5_2:73196792-73196811 | Msa0787460:CDS | 45.0% | |
| GCCTTATCCTACACTAAGTG+GGG | + | chr5_2:73196796-73196815 | None:intergenic | 45.0% | |
| !! | CTTGATAGTGATGCAGGTAC+TGG | - | chr5_2:73197267-73197286 | Msa0787460:intron | 45.0% |
| GCTATTGCTGATGCCCTTAA+AGG | - | chr5_2:73197336-73197355 | Msa0787460:intron | 45.0% | |
| GTGTTCATAACAGCTGGGAT+GGG | - | chr5_2:73197369-73197388 | Msa0787460:intron | 45.0% | |
| AGGATATGTAACAACGCCCA+CGG | + | chr5_2:73197460-73197479 | None:intergenic | 45.0% | |
| AGGACGTAAAAGATCCTTGC+AGG | - | chr5_2:73197491-73197510 | Msa0787460:intron | 45.0% | |
| CTGGTCTCAAACAACGAGTA+GGG | + | chr5_2:73197524-73197543 | None:intergenic | 45.0% | |
| ! | ACTGGTCTCAAACAACGAGT+AGG | + | chr5_2:73197525-73197544 | None:intergenic | 45.0% |
| ! | GCAGATGATGTTTTACGCCA+AGG | - | chr5_2:73197737-73197756 | Msa0787460:intron | 45.0% |
| ! | TGTTTTACGCCAAGGAGTTC+AGG | - | chr5_2:73197745-73197764 | Msa0787460:intron | 45.0% |
| ! | GTTTTACGCCAAGGAGTTCA+GGG | - | chr5_2:73197746-73197765 | Msa0787460:intron | 45.0% |
| CTGAAATTCCCTGAACTCCT+TGG | + | chr5_2:73197757-73197776 | None:intergenic | 45.0% | |
| CAAGTCTAATGGGACCAACT+AGG | + | chr5_2:73197858-73197877 | None:intergenic | 45.0% | |
| GCGTGAAGTTCATTTGACCA+GGG | + | chr5_2:73198179-73198198 | None:intergenic | 45.0% | |
| AGCGTGAAGTTCATTTGACC+AGG | + | chr5_2:73198180-73198199 | None:intergenic | 45.0% | |
| TATTCACCAGCTTTCCTCTG+TGG | - | chr5_2:73198321-73198340 | Msa0787460:intron | 45.0% | |
| GGTGAAAGATCGTAAACACG+AGG | - | chr5_2:73198701-73198720 | Msa0787460:CDS | 45.0% | |
| ATCGTGCTTCGACTTTACTC+AGG | + | chr5_2:73198899-73198918 | None:intergenic | 45.0% | |
| GTAAAGTCGAAGCACGATTG+AGG | - | chr5_2:73198901-73198920 | Msa0787460:intron | 45.0% | |
| !!! | AGGATCGAGTGCTGGTTTTT+AGG | + | chr5_2:73198953-73198972 | None:intergenic | 45.0% |
| TCGATCCTGACTACAATGCT+AGG | - | chr5_2:73198965-73198984 | Msa0787460:intron | 45.0% | |
| TTCGGTCCCACCAAATTATG+CGG | - | chr5_2:73199041-73199060 | Msa0787460:CDS | 45.0% | |
| TATGTGGGACCCGCATAATT+TGG | + | chr5_2:73199054-73199073 | None:intergenic | 45.0% | |
| CGGGTCCCACATAAATTTAG+TGG | - | chr5_2:73199061-73199080 | Msa0787460:CDS | 45.0% | |
| GATACCTGGACTTGTGAATG+TGG | - | chr5_2:73199266-73199285 | Msa0787460:intron | 45.0% | |
| !!! | GGCTTTGTTTCTGCGTTTTC+TGG | - | chr5_2:73199885-73199904 | Msa0787460:intron | 45.0% |
| !! | TGTTGATGATCGTTACACCG+GGG | - | chr5_2:73200009-73200028 | Msa0787460:intron | 45.0% |
| AAAAGACTGCGAAAAGCCAG+TGG | + | chr5_2:73200056-73200075 | None:intergenic | 45.0% | |
| AGAAGCTGCTAACAGATCCA+AGG | - | chr5_2:73200080-73200099 | Msa0787460:CDS | 45.0% | |
| GAAGCTGCTAACAGATCCAA+GGG | - | chr5_2:73200081-73200100 | Msa0787460:CDS | 45.0% | |
| ! | CGGTGCTCTAGATTCAACTT+TGG | + | chr5_2:73200188-73200207 | None:intergenic | 45.0% |
| !!! | TTAGTATTATTTTTAAAAAT+AGG | - | chr5_2:73198427-73198446 | Msa0787460:CDS | 5.0% |
| ! | CTGGCTATGTTGTTTGGAGC+GGG | - | chr5_2:73196393-73196412 | Msa0787460:intron | 50.0% |
| ! | TGGCTATGTTGTTTGGAGCG+GGG | - | chr5_2:73196394-73196413 | Msa0787460:intron | 50.0% |
| !! | AGATGGTGGAAACTGGCCTT+AGG | - | chr5_2:73196567-73196586 | Msa0787460:intron | 50.0% |
| ACTAAGTGGGGTCGACTACA+TGG | + | chr5_2:73196784-73196803 | None:intergenic | 50.0% | |
| TAGTCGACCCCACTTAGTGT+AGG | - | chr5_2:73196786-73196805 | Msa0787460:CDS | 50.0% | |
| GCATGGTTGCATAGCATTGC+AGG | + | chr5_2:73196895-73196914 | None:intergenic | 50.0% | |
| GCTAATGCGCTCACAATTGC+TGG | - | chr5_2:73196974-73196993 | Msa0787460:intron | 50.0% | |
| ! | ATTGGAGAGCTTCTGACTCG+TGG | - | chr5_2:73197143-73197162 | Msa0787460:intron | 50.0% |
| ! | GAGCTTCTGACTCGTGGATT+AGG | - | chr5_2:73197149-73197168 | Msa0787460:intron | 50.0% |
| ACATGTGCAAGCAAGGAGAG+TGG | + | chr5_2:73197179-73197198 | None:intergenic | 50.0% | |
| !! | GATAGTGATGCAGGTACTGG+CGG | - | chr5_2:73197270-73197289 | Msa0787460:intron | 50.0% |
| !! | ATAGTGATGCAGGTACTGGC+GGG | - | chr5_2:73197271-73197290 | Msa0787460:intron | 50.0% |
| ! | TACTGGCGGGAATCCACTTT+TGG | - | chr5_2:73197284-73197303 | Msa0787460:intron | 50.0% |
| !! | ACTGGCGGGAATCCACTTTT+GGG | - | chr5_2:73197285-73197304 | Msa0787460:intron | 50.0% |
| ! | ACTTTTGGGCGAACAAGCTG+CGG | - | chr5_2:73197299-73197318 | Msa0787460:intron | 50.0% |
| GGTGTTCATAACAGCTGGGA+TGG | - | chr5_2:73197368-73197387 | Msa0787460:intron | 50.0% | |
| TTCATAACAGCTGGGATGGG+TGG | - | chr5_2:73197372-73197391 | Msa0787460:intron | 50.0% | |
| TCATAACAGCTGGGATGGGT+GGG | - | chr5_2:73197373-73197392 | Msa0787460:intron | 50.0% | |
| CGTAAAAGATCCTTGCAGGC+AGG | - | chr5_2:73197495-73197514 | Msa0787460:intron | 50.0% | |
| !! | AGACGAAAAGCATCCTGGAG+TGG | + | chr5_2:73197716-73197735 | None:intergenic | 50.0% |
| !! | CTGCAAGACGAAAAGCATCC+TGG | + | chr5_2:73197721-73197740 | None:intergenic | 50.0% |
| CAAGTGACCTGTTGTGTGCA+AGG | - | chr5_2:73197962-73197981 | Msa0787460:intron | 50.0% | |
| TGCTAGGAACCAATGTAGCC+AGG | - | chr5_2:73198649-73198668 | Msa0787460:CDS | 50.0% | |
| TTGTAGTCAGGATCGAGTGC+TGG | + | chr5_2:73198961-73198980 | None:intergenic | 50.0% | |
| TCGGTCCCACCAAATTATGC+GGG | - | chr5_2:73199042-73199061 | Msa0787460:CDS | 50.0% | |
| TGGGACCCGCATAATTTGGT+GGG | + | chr5_2:73199050-73199069 | None:intergenic | 50.0% | |
| ACTCTCGAGTTTGACAACCC+TGG | - | chr5_2:73199228-73199247 | Msa0787460:intron | 50.0% | |
| GACTCTGGTACTGCAATGCT+CGG | - | chr5_2:73199318-73199337 | Msa0787460:intron | 50.0% | |
| ! | TTCTGCTCGGTTTTTACCGG+AGG | + | chr5_2:73199355-73199374 | None:intergenic | 50.0% |
| ! | GTTCTGCTGCTTCTTCTGCT+CGG | + | chr5_2:73199368-73199387 | None:intergenic | 50.0% |
| AGCAGAAGAAGCAGCAGAAC+AGG | - | chr5_2:73199368-73199387 | Msa0787460:intron | 50.0% | |
| AGCAGCAGAACAGGCTACTT+TGG | - | chr5_2:73199377-73199396 | Msa0787460:intron | 50.0% | |
| AGGAAAGGACATTACCCTGC+AGG | - | chr5_2:73199458-73199477 | Msa0787460:intron | 50.0% | |
| TTACCCTGCAGGAAGTCAAC+AGG | - | chr5_2:73199469-73199488 | Msa0787460:intron | 50.0% | |
| TACCCTGCAGGAAGTCAACA+GGG | - | chr5_2:73199470-73199489 | Msa0787460:intron | 50.0% | |
| !! | TACCCTGTTGACTTCCTGCA+GGG | + | chr5_2:73199475-73199494 | None:intergenic | 50.0% |
| !! | ATACCCTGTTGACTTCCTGC+AGG | + | chr5_2:73199476-73199495 | None:intergenic | 50.0% |
| ! | GGAAGTCAACAGGGTATCTC+AGG | - | chr5_2:73199479-73199498 | Msa0787460:intron | 50.0% |
| GATAGTCACGTGAATCTCCC+CGG | + | chr5_2:73200029-73200048 | None:intergenic | 50.0% | |
| TCAAGAAGCTTAGCAGCCCT+TGG | + | chr5_2:73200100-73200119 | None:intergenic | 50.0% | |
| CTTCTTGACAAAGTGGCCGA+GGG | - | chr5_2:73200112-73200131 | Msa0787460:CDS | 50.0% | |
| AAAAAGAGCTTTCGTGGGGG+CGG | + | chr5_2:73200208-73200227 | None:intergenic | 50.0% | |
| AAGGTCGTTGGAATTGGGGG+TGG | - | chr5_2:73196090-73196109 | Msa0787460:CDS | 55.0% | |
| !! | TGGTGGAAACTGGCCTTAGG+TGG | - | chr5_2:73196570-73196589 | Msa0787460:intron | 55.0% |
| ! | GCAGCTTGTTCGCCCAAAAG+TGG | + | chr5_2:73197300-73197319 | None:intergenic | 55.0% |
| CATAACAGCTGGGATGGGTG+GGG | - | chr5_2:73197374-73197393 | Msa0787460:intron | 55.0% | |
| ATAACAGCTGGGATGGGTGG+GGG | - | chr5_2:73197375-73197394 | Msa0787460:intron | 55.0% | |
| AGAGGCAGGTTACTTGACCG+TGG | - | chr5_2:73197440-73197459 | Msa0787460:intron | 55.0% | |
| GAGGCAGGTTACTTGACCGT+GGG | - | chr5_2:73197441-73197460 | Msa0787460:intron | 55.0% | |
| GTCGAAGCACGATTGAGGTG+CGG | - | chr5_2:73198906-73198925 | Msa0787460:intron | 55.0% | |
| AAGCACGATTGAGGTGCGGT+GGG | - | chr5_2:73198910-73198929 | Msa0787460:intron | 55.0% | |
| GTGGGACCCGCATAATTTGG+TGG | + | chr5_2:73199051-73199070 | None:intergenic | 55.0% | |
| GGTACTGCAATGCTCGGAGT+AGG | - | chr5_2:73199324-73199343 | Msa0787460:intron | 55.0% | |
| CTCGGAGTAGGTGTTTCCTC+CGG | - | chr5_2:73199336-73199355 | Msa0787460:intron | 55.0% | |
| CACGTGACTATCATCGCCAC+TGG | - | chr5_2:73200037-73200056 | Msa0787460:CDS | 55.0% | |
| GCTTCTTGACAAAGTGGCCG+AGG | - | chr5_2:73200111-73200130 | Msa0787460:CDS | 55.0% | |
| TTTGAGGACTTGAGGGGAGC+GGG | + | chr5_2:73200157-73200176 | None:intergenic | 55.0% | |
| GTTTGAGGACTTGAGGGGAG+CGG | + | chr5_2:73200158-73200177 | None:intergenic | 55.0% | |
| GTCGTTGGAATTGGGGGTGG+TGG | - | chr5_2:73196093-73196112 | Msa0787460:CDS | 60.0% | |
| TTTGGGCGAACAAGCTGCGG+AGG | - | chr5_2:73197302-73197321 | Msa0787460:intron | 60.0% | |
| AGTAGGGACACCTGCCTGCA+AGG | + | chr5_2:73197508-73197527 | None:intergenic | 60.0% | |
| TGACGAGCAGATGCCACTCC+AGG | - | chr5_2:73197700-73197719 | Msa0787460:intron | 60.0% | |
| GAAGCACGATTGAGGTGCGG+TGG | - | chr5_2:73198909-73198928 | Msa0787460:intron | 60.0% | |
| ATTGAGGTGCGGTGGGACGT+AGG | - | chr5_2:73198917-73198936 | Msa0787460:intron | 60.0% | |
| ! | CTGGGATGGGTGGGGGTACA+GGG | - | chr5_2:73197382-73197401 | Msa0787460:intron | 65.0% |
| ! | ATGGGTGGGGGTACAGGGTC+CGG | - | chr5_2:73197387-73197406 | Msa0787460:intron | 65.0% |
| AGCCACAACTGGGGCAGCAC+CGG | + | chr5_2:73197409-73197428 | None:intergenic | 65.0% | |
| ! | GCTGGGATGGGTGGGGGTAC+AGG | - | chr5_2:73197381-73197400 | Msa0787460:intron | 70.0% |
| !! | GTCCGGTGCTGCCCCAGTTG+TGG | - | chr5_2:73197404-73197423 | Msa0787460:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 73195802 | 73200388 | 73195802 | ID=Msa0787460;Name=Msa0787460 |
| chr5_2 | mRNA | 73195802 | 73200388 | 73195802 | ID=Msa0787460-mRNA-1;Parent=Msa0787460;Name=Msa0787460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=102|0.8|0.83|1|1|1|6|157|428 |
| chr5_2 | exon | 73195802 | 73196231 | 73195802 | ID=Msa0787460-mRNA-1:exon:22344;Parent=Msa0787460-mRNA-1 |
| chr5_2 | exon | 73196690 | 73196923 | 73196690 | ID=Msa0787460-mRNA-1:exon:22343;Parent=Msa0787460-mRNA-1 |
| chr5_2 | exon | 73198403 | 73198570 | 73198403 | ID=Msa0787460-mRNA-1:exon:22342;Parent=Msa0787460-mRNA-1 |
| chr5_2 | exon | 73198648 | 73198907 | 73198648 | ID=Msa0787460-mRNA-1:exon:22341;Parent=Msa0787460-mRNA-1 |
| chr5_2 | exon | 73199020 | 73199119 | 73199020 | ID=Msa0787460-mRNA-1:exon:22340;Parent=Msa0787460-mRNA-1 |
| chr5_2 | exon | 73200035 | 73200388 | 73200035 | ID=Msa0787460-mRNA-1:exon:22339;Parent=Msa0787460-mRNA-1 |
| chr5_2 | five_prime_UTR | 73200287 | 73200388 | 73200287 | ID=Msa0787460-mRNA-1:five_prime_utr;Parent=Msa0787460-mRNA-1 |
| chr5_2 | CDS | 73200035 | 73200286 | 73200035 | ID=Msa0787460-mRNA-1:cds;Parent=Msa0787460-mRNA-1 |
| chr5_2 | CDS | 73199020 | 73199119 | 73199020 | ID=Msa0787460-mRNA-1:cds;Parent=Msa0787460-mRNA-1 |
| chr5_2 | CDS | 73198648 | 73198907 | 73198648 | ID=Msa0787460-mRNA-1:cds;Parent=Msa0787460-mRNA-1 |
| chr5_2 | CDS | 73198403 | 73198570 | 73198403 | ID=Msa0787460-mRNA-1:cds;Parent=Msa0787460-mRNA-1 |
| chr5_2 | CDS | 73196690 | 73196923 | 73196690 | ID=Msa0787460-mRNA-1:cds;Parent=Msa0787460-mRNA-1 |
| chr5_2 | CDS | 73195959 | 73196231 | 73195959 | ID=Msa0787460-mRNA-1:cds;Parent=Msa0787460-mRNA-1 |
| chr5_2 | three_prime_UTR | 73195802 | 73195958 | 73195802 | ID=Msa0787460-mRNA-1:three_prime_utr;Parent=Msa0787460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
