AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1415250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415250 MtrunA17_Chr7g0248541 96.642 268 9 0 1 268 1 268 0.0 537
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415250 AT4G01310.1 69.084 262 75 3 4 262 3 261 8.39e-127 361

Find 80 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTCTACCCTTTGATTT+TGG 0.123648 tig0024181:-73728 None:intergenic
TTCTAAATTATTTAGCTAAT+TGG 0.183742 tig0024181:+73981 Msa1415250:three_prime_UTR
GAATTACAACATTGGTATTA+AGG 0.259700 tig0024181:+73514 Msa1415250:CDS
ACAACGAAGAAGAAGAGAAT+TGG 0.342752 tig0024181:-70676 None:intergenic
AAAACCAACCTGATGAATAT+TGG 0.349771 tig0024181:-70849 None:intergenic
ACCACAATCTTCTTAACTTT+AGG 0.360933 tig0024181:-71735 None:intergenic
TCTGTGAAAGCTGATGCTTC+TGG 0.361039 tig0024181:+70725 Msa1415250:CDS
TTGAATATCAGCAGCTTTGA+TGG 0.369608 tig0024181:+73485 Msa1415250:CDS
TCTTCTTCGTTGTTCTCTCA+TGG 0.377778 tig0024181:+70686 Msa1415250:CDS
TCAGCTCTGGGAACACAGTT+TGG 0.396548 tig0024181:-73538 None:intergenic
TGATGCTTCTGGTGCTGTAT+TGG 0.397654 tig0024181:+70736 Msa1415250:CDS
TTCCTCGCCCGAGTCTTAAC+AGG 0.398404 tig0024181:-71843 None:intergenic
GGGATATGGATAGCGTTGTT+TGG 0.399513 tig0024181:-70551 None:intergenic
TTGACCTTCCCTGATCTTGA+AGG 0.406375 tig0024181:-71877 None:intergenic
CCGTTGCCACCTTCAAGATC+AGG 0.407745 tig0024181:+71868 Msa1415250:CDS
CCTATACCAGATTTCAGCTC+TGG 0.422499 tig0024181:-73551 None:intergenic
TGCTCGCTATGAGAGGGATA+TGG 0.424260 tig0024181:-70565 None:intergenic
CAACGAAGAAGAAGAGAATT+GGG 0.435438 tig0024181:-70675 None:intergenic
GTGTTCCCAGAGCTGAAATC+TGG 0.439069 tig0024181:+73545 Msa1415250:CDS
CTCCTACACCAATATTCATC+AGG 0.443040 tig0024181:+70841 Msa1415250:CDS
TGCACAAAATGCAAAAGGTT+TGG 0.451207 tig0024181:+71779 Msa1415250:CDS
AGCTCGAAATTGAGAGAGAA+AGG 0.454415 tig0024181:-70645 None:intergenic
TGCTTCTGGTGCTGTATTGG+TGG 0.457226 tig0024181:+70739 Msa1415250:CDS
CTTGATCTAGCACTGATCAC+TGG 0.459647 tig0024181:+71813 Msa1415250:CDS
CAGAAGAGTGTAGAAGAGAA+GGG 0.460397 tig0024181:-70616 None:intergenic
CTAAGTTGATAACGCGGTCT+AGG 0.460763 tig0024181:-73433 None:intergenic
GCAGAAGAGTGTAGAAGAGA+AGG 0.463128 tig0024181:-70617 None:intergenic
CCTTGAAAATCTCTTGTCCT+AGG 0.465103 tig0024181:-73461 None:intergenic
CAAAGTGCCCTTGTGTTTGA+GGG 0.465401 tig0024181:-70512 None:intergenic
ATCAGCAGCTTTGATGGGAA+TGG 0.466511 tig0024181:+73491 Msa1415250:CDS
TTATCAACTTAGGACTTCCT+AGG 0.473041 tig0024181:+73444 Msa1415250:CDS
CTAGACCGCGTTATCAACTT+AGG 0.474580 tig0024181:+73434 Msa1415250:CDS
CCAGAGCTGAAATCTGGTAT+AGG 0.476827 tig0024181:+73551 Msa1415250:CDS
ATTGTGGTAAACTGTGGTAT+TGG 0.479842 tig0024181:+71750 Msa1415250:CDS
ATCAGGGAAGGTCAACCACT+TGG 0.482119 tig0024181:+71885 Msa1415250:CDS
ACAAAGTGCCCTTGTGTTTG+AGG 0.495680 tig0024181:-70513 None:intergenic
TCAGCAGCTTTGATGGGAAT+GGG 0.496382 tig0024181:+73492 Msa1415250:CDS
GAAGCTGCACAAAATGCAAA+AGG 0.526930 tig0024181:+71774 Msa1415250:CDS
AACTTCAACTCCCTCTCTGA+AGG 0.527309 tig0024181:-73660 None:intergenic
GAAGAAGAAGAGAATTGGGT+TGG 0.530860 tig0024181:-70671 None:intergenic
TCAGAGATAATAATGAACTA+AGG 0.531953 tig0024181:+73789 Msa1415250:three_prime_UTR
GATCCAAAATCAAAGGGTAG+AGG 0.531994 tig0024181:+73725 Msa1415250:CDS
TTGATCTAGCACTGATCACT+GGG 0.532729 tig0024181:+71814 Msa1415250:CDS
CCTGATCTTGAAGGTGGCAA+CGG 0.533580 tig0024181:-71868 None:intergenic
TGAATATCAGCAGCTTTGAT+GGG 0.536920 tig0024181:+73486 Msa1415250:CDS
AGGGGTTGTAGCCATTGTTG+TGG 0.537830 tig0024181:-70597 None:intergenic
CGTTGCCACCTTCAAGATCA+GGG 0.545237 tig0024181:+71869 Msa1415250:CDS
GGCAGAGACCTGTTAAGACT+CGG 0.549649 tig0024181:+71835 Msa1415250:CDS
GGAGAAATCTGAAGCAGAGA+AGG 0.557353 tig0024181:+70760 Msa1415250:CDS
AGAAGAGTGTAGAAGAGAAG+GGG 0.566918 tig0024181:-70615 None:intergenic
TATAGGTACACCTAGAGGAA+TGG 0.575467 tig0024181:+73568 Msa1415250:CDS
CTCTCATGGAAACAACAGAC+TGG 0.584243 tig0024181:+70700 Msa1415250:CDS
ACCTTCCCTGATCTTGAAGG+TGG 0.584511 tig0024181:-71874 None:intergenic
GAGAATTCTTCCATAAGCAA+AGG 0.587605 tig0024181:-70821 None:intergenic
ATGCAGATATCCATTCCTCT+AGG 0.588286 tig0024181:-73578 None:intergenic
TGAGCAATGCTCGCTATGAG+AGG 0.592964 tig0024181:-70572 None:intergenic
CTATACCAGATTTCAGCTCT+GGG 0.594159 tig0024181:-73550 None:intergenic
TCCTTCTTGATCAGTTCTAG+CGG 0.602168 tig0024181:-73609 None:intergenic
ATGGGTATGCCCTTCAGAGA+GGG 0.602286 tig0024181:+73650 Msa1415250:CDS
GCAGAGACCTGTTAAGACTC+GGG 0.607855 tig0024181:+71836 Msa1415250:CDS
AAGAAGATTGTGGTAAACTG+TGG 0.615390 tig0024181:+71744 Msa1415250:CDS
ACTTCAACTCCCTCTCTGAA+GGG 0.615523 tig0024181:-73659 None:intergenic
GGGATTGCTGTGACACTCAG+AGG 0.615781 tig0024181:+71906 Msa1415250:CDS
TCAGGGAAGGTCAACCACTT+GGG 0.616213 tig0024181:+71886 Msa1415250:CDS
GCCACCTTCAAGATCAGGGA+AGG 0.616261 tig0024181:+71873 Msa1415250:CDS
GAGCAATGCTCGCTATGAGA+GGG 0.619636 tig0024181:-70571 None:intergenic
AAAATTTACCCTCAAACACA+AGG 0.621693 tig0024181:+70504 None:intergenic
GGGAATGGGAATTACAACAT+TGG 0.626171 tig0024181:+73506 Msa1415250:CDS
ACCGCTAGAACTGATCAAGA+AGG 0.627372 tig0024181:+73608 Msa1415250:CDS
TCAATAATATTACATTACAT+CGG 0.628786 tig0024181:-73852 None:intergenic
GCCTAAAGTTAAGAAGATTG+TGG 0.634345 tig0024181:+71734 Msa1415250:CDS
GACCTGTTAAGACTCGGGCG+AGG 0.646443 tig0024181:+71841 Msa1415250:CDS
AACCTGATGAATATTGGTGT+AGG 0.659149 tig0024181:-70843 None:intergenic
CATGGGTATGCCCTTCAGAG+AGG 0.660728 tig0024181:+73649 Msa1415250:CDS
CATTGCTCAATCCACAACAA+TGG 0.671751 tig0024181:+70586 Msa1415250:exon
CATTACATCGGAATGAAACG+AGG 0.684935 tig0024181:-73840 None:intergenic
AGTGTCACAGCAATCCCAAG+TGG 0.690222 tig0024181:-71900 None:intergenic
AAATTTACCCTCAAACACAA+GGG 0.705329 tig0024181:+70505 None:intergenic
TCTGGTATAGGTACACCTAG+AGG 0.713169 tig0024181:+73563 Msa1415250:CDS
GAAGTCCTAAGTTGATAACG+CGG 0.748246 tig0024181:-73439 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAAATAGTATAAAAAAT+GGG - tig0024181:72028-72047 None:intergenic 10.0%
!! ATACTAAATAGTATAAAAAA+TGG - tig0024181:72029-72048 None:intergenic 10.0%
!! ATTATTCATATTACTTAAAT+AGG - tig0024181:72350-72369 None:intergenic 10.0%
!! ACAAAATAATATTTGATCAT+TGG - tig0024181:72895-72914 None:intergenic 15.0%
!! TAATGCAAAATACTATAATT+TGG - tig0024181:73140-73159 None:intergenic 15.0%
!!! ATTCTTATGGTTTTAAAATA+TGG - tig0024181:73318-73337 None:intergenic 15.0%
!! TCAATAATATTACATTACAT+CGG - tig0024181:73855-73874 None:intergenic 15.0%
!! TTCTAAATTATTTAGCTAAT+TGG + tig0024181:73981-74000 Msa1415250:three_prime_UTR 15.0%
!!! AATTGGACTATTAATATTTT+AGG + tig0024181:73998-74017 Msa1415250:three_prime_UTR 15.0%
!!! TTTTTTGGTTTTGGTTTAAT+GGG + tig0024181:70963-70982 Msa1415250:intron 20.0%
!!! GCATTTTCAAAAATTCATTT+TGG - tig0024181:71409-71428 None:intergenic 20.0%
!!! ATGACATTAAGTTGATAAAT+CGG + tig0024181:71477-71496 Msa1415250:intron 20.0%
!!! AATTTGAAACTAAGTGAATA+AGG + tig0024181:71505-71524 Msa1415250:intron 20.0%
!! GTTAACAAAATATATTCACT+AGG - tig0024181:71969-71988 None:intergenic 20.0%
!!! TTTAGTATTTAGAACAATGT+CGG + tig0024181:72041-72060 Msa1415250:intron 20.0%
!! TAAAGATGTTCATAAGATAT+AGG + tig0024181:72622-72641 Msa1415250:intron 20.0%
!! TATTTGAATATGTTGTCATT+TGG + tig0024181:73064-73083 Msa1415250:intron 20.0%
!! GCATGTATAATATATTCTTA+TGG - tig0024181:73331-73350 None:intergenic 20.0%
!!! GATTCTTTTTGTAAAAGATA+TGG + tig0024181:73873-73892 Msa1415250:three_prime_UTR 20.0%
!! CCATATAAAAAATTGATTGA+TGG - tig0024181:73913-73932 None:intergenic 20.0%
!!! CCATCAATCAATTTTTTATA+TGG + tig0024181:73910-73929 Msa1415250:three_prime_UTR 20.0%
! AAAAATTGTTCCTTTGCTTA+TGG + tig0024181:70811-70830 Msa1415250:CDS 25.0%
!!! AGGTTGGTTTTTGTTAAATT+TGG + tig0024181:70861-70880 Msa1415250:intron 25.0%
!!! TTTGATTTTGCGTTTTTGTT+GGG + tig0024181:70918-70937 Msa1415250:intron 25.0%
!!! GTTAAAGTTTGAGTCTTTTT+TGG + tig0024181:70948-70967 Msa1415250:intron 25.0%
!!! CTTTTTTGGTTTTGGTTTAA+TGG + tig0024181:70962-70981 Msa1415250:intron 25.0%
!!! TTTTTGGTTTTGGTTTAATG+GGG + tig0024181:70964-70983 Msa1415250:intron 25.0%
! TTGCAATATCCATAATTTGA+GGG - tig0024181:71033-71052 None:intergenic 25.0%
! TTTGCAATATCCATAATTTG+AGG - tig0024181:71034-71053 None:intergenic 25.0%
!!! TGATTTTGACTTAAATGAGT+TGG + tig0024181:71175-71194 Msa1415250:intron 25.0%
!! AATTGATTCTACTTAAAGAG+AGG - tig0024181:71294-71313 None:intergenic 25.0%
! CTCTTTAAGTAGAATCAATT+CGG + tig0024181:71294-71313 Msa1415250:intron 25.0%
!! ACAGTTAAAATTGATTCTAG+AGG - tig0024181:71358-71377 None:intergenic 25.0%
!!! TGACATTAAGTTGATAAATC+GGG + tig0024181:71478-71497 Msa1415250:intron 25.0%
!!! TTAGATTCTAGTTAATTTGC+TGG + tig0024181:72084-72103 Msa1415250:intron 25.0%
!!! GCTTTTTTCTTAAATAGAGA+AGG + tig0024181:72242-72261 Msa1415250:intron 25.0%
!! TAAAGCCTATTTAGCTTAAA+AGG + tig0024181:72278-72297 Msa1415250:intron 25.0%
! TTCATATTACTTAAATAGGC+CGG - tig0024181:72346-72365 None:intergenic 25.0%
! CAATGTGATCTAAGTTTAAA+TGG - tig0024181:72596-72615 None:intergenic 25.0%
!! TAAGATATAGGCTTTTAAAC+AGG + tig0024181:72634-72653 Msa1415250:intron 25.0%
!!! GTAATAGAAAGTGTTTACAT+AGG + tig0024181:72913-72932 Msa1415250:intron 25.0%
!! ATTCTCTTTTATCTTGAGAA+TGG + tig0024181:72977-72996 Msa1415250:intron 25.0%
! TAACACAGGATGTTTAATAT+CGG + tig0024181:73176-73195 Msa1415250:intron 25.0%
!! ACCAATAGGTATTAGATTTT+GGG - tig0024181:73386-73405 None:intergenic 25.0%
!! AACCAATAGGTATTAGATTT+TGG - tig0024181:73387-73406 None:intergenic 25.0%
! GAATTACAACATTGGTATTA+AGG + tig0024181:73514-73533 Msa1415250:CDS 25.0%
! TCAAGAAGGACAAAAATTAT+TGG + tig0024181:73622-73641 Msa1415250:CDS 25.0%
!!! TCATTTTGATCCAAAATCAA+AGG + tig0024181:73718-73737 Msa1415250:CDS 25.0%
!!! CATTTTGATCCAAAATCAAA+GGG + tig0024181:73719-73738 Msa1415250:CDS 25.0%
! TCAGAGATAATAATGAACTA+AGG + tig0024181:73789-73808 Msa1415250:three_prime_UTR 25.0%
AAAACCAACCTGATGAATAT+TGG - tig0024181:70852-70871 None:intergenic 30.0%
!!! TTTGGACTGTTTTTTTGTGA+TGG + tig0024181:70879-70898 Msa1415250:intron 30.0%
!!! TTGGACTGTTTTTTTGTGAT+GGG + tig0024181:70880-70899 Msa1415250:intron 30.0%
!! GTTTGATTTTGCGTTTTTGT+TGG + tig0024181:70917-70936 Msa1415250:intron 30.0%
!!! GTTTGAGTCTTTTTTGGTTT+TGG + tig0024181:70954-70973 Msa1415250:intron 30.0%
AGGGACTATATTGATACATA+TGG - tig0024181:71014-71033 None:intergenic 30.0%
CAATATAGTCCCTCAAATTA+TGG + tig0024181:71021-71040 Msa1415250:intron 30.0%
AATTGCTTCAAGTGTATGTT+TGG + tig0024181:71106-71125 Msa1415250:intron 30.0%
!!! TTTTGACTTAAATGAGTTGG+AGG + tig0024181:71178-71197 Msa1415250:intron 30.0%
!! GACATTAAGTTGATAAATCG+GGG + tig0024181:71479-71498 Msa1415250:intron 30.0%
! TTGATAACATGTCTATAGAG+AGG + tig0024181:71540-71559 Msa1415250:intron 30.0%
TGATAACATGTCTATAGAGA+GGG + tig0024181:71541-71560 Msa1415250:intron 30.0%
! AGTTGGTACTCGAAATTAAA+GGG - tig0024181:71640-71659 None:intergenic 30.0%
!! AAGTTGGTACTCGAAATTAA+AGG - tig0024181:71641-71660 None:intergenic 30.0%
CTTAGAGTAAATACTCAAGT+TGG - tig0024181:71657-71676 None:intergenic 30.0%
!! TATTGTTTTTCCCTCTTTTC+AGG + tig0024181:71710-71729 Msa1415250:intron 30.0%
ACCACAATCTTCTTAACTTT+AGG - tig0024181:71738-71757 None:intergenic 30.0%
CAAAATATATTCACTAGGCA+AGG - tig0024181:71964-71983 None:intergenic 30.0%
CTCTATTTAAGAAAAAAGCC+TGG - tig0024181:72241-72260 None:intergenic 30.0%
!! ATAGGCTTTAAAAAAAGCCT+AGG - tig0024181:72268-72287 None:intergenic 30.0%
! ATAATCAACACGAGGTTTTT+GGG - tig0024181:72532-72551 None:intergenic 30.0%
TGTGTAGTATAATGCATCTT+TGG + tig0024181:72812-72831 Msa1415250:intron 30.0%
!!! TCATTTTACACGCTTTGTTT+TGG - tig0024181:72958-72977 None:intergenic 30.0%
!!! TAGGTATTAGATTTTGGGTT+CGG - tig0024181:73381-73400 None:intergenic 30.0%
ACCCAAAATCTAATACCTAT+TGG + tig0024181:73382-73401 Msa1415250:intron 30.0%
!! ACAAAAATTATTGGCTCTCA+TGG + tig0024181:73631-73650 Msa1415250:CDS 30.0%
!! CAAAAATTATTGGCTCTCAT+GGG + tig0024181:73632-73651 Msa1415250:CDS 30.0%
CAACGAAGAAGAAGAGAATT+GGG - tig0024181:70678-70697 None:intergenic 35.0%
ACAACGAAGAAGAAGAGAAT+TGG - tig0024181:70679-70698 None:intergenic 35.0%
GAGAATTCTTCCATAAGCAA+AGG - tig0024181:70824-70843 None:intergenic 35.0%
AACCTGATGAATATTGGTGT+AGG - tig0024181:70846-70865 None:intergenic 35.0%
TACACCAATATTCATCAGGT+TGG + tig0024181:70845-70864 Msa1415250:intron 35.0%
ACTTGAAGCAATTCAACAGA+GGG - tig0024181:71099-71118 None:intergenic 35.0%
GGTTCTATGTTGACAAGAAT+TGG + tig0024181:71127-71146 Msa1415250:intron 35.0%
! GAGGTAAAGTGATTTGTGTT+CGG + tig0024181:71197-71216 Msa1415250:intron 35.0%
TTAAGTAGAATCAATTCGGC+AGG + tig0024181:71298-71317 Msa1415250:intron 35.0%
TCCTCTCCATTTGTATTTGT+AGG + tig0024181:71447-71466 Msa1415250:intron 35.0%
CCTCTCCATTTGTATTTGTA+GGG + tig0024181:71448-71467 Msa1415250:intron 35.0%
CTAGTCCCTACAAATACAAA+TGG - tig0024181:71456-71475 None:intergenic 35.0%
GCCTAAAGTTAAGAAGATTG+TGG + tig0024181:71734-71753 Msa1415250:CDS 35.0%
AAGAAGATTGTGGTAAACTG+TGG + tig0024181:71744-71763 Msa1415250:CDS 35.0%
ATTGTGGTAAACTGTGGTAT+TGG + tig0024181:71750-71769 Msa1415250:CDS 35.0%
TGCACAAAATGCAAAAGGTT+TGG + tig0024181:71779-71798 Msa1415250:CDS 35.0%
TTCTTAAATAGAGAAGGCCT+AGG + tig0024181:72248-72267 Msa1415250:intron 35.0%
AAAAGCCTCTTAAGCCTATT+AGG + tig0024181:72320-72339 Msa1415250:intron 35.0%
! GATAATCAACACGAGGTTTT+TGG - tig0024181:72533-72552 None:intergenic 35.0%
!! CTCTTTTGATAATCAACACG+AGG - tig0024181:72540-72559 None:intergenic 35.0%
! TGGATCACATGTAAGCTTTT+TGG + tig0024181:72832-72851 Msa1415250:intron 35.0%
!!! ACATGTAAGCTTTTTGGAGT+TGG + tig0024181:72838-72857 Msa1415250:intron 35.0%
!!! CATGTAAGCTTTTTGGAGTT+GGG + tig0024181:72839-72858 Msa1415250:intron 35.0%
TTAGCCTCATATTCTAACAC+AGG + tig0024181:73162-73181 Msa1415250:intron 35.0%
ACATCCTGTGTTAGAATATG+AGG - tig0024181:73169-73188 None:intergenic 35.0%
! GGATGTTTAATATCGGTTAG+CGG + tig0024181:73183-73202 Msa1415250:intron 35.0%
! TTTGAGATTGCGGAAAATTG+AGG + tig0024181:73225-73244 Msa1415250:intron 35.0%
GAGACATCACATAAAAAACC+TGG + tig0024181:73263-73282 Msa1415250:intron 35.0%
CATAAAAAACCTGGATGTTG+CGG + tig0024181:73272-73291 Msa1415250:intron 35.0%
TCTGTCGAATATCAACCAAT+AGG - tig0024181:73400-73419 None:intergenic 35.0%
TTATCAACTTAGGACTTCCT+AGG + tig0024181:73444-73463 Msa1415250:CDS 35.0%
! TTGAATATCAGCAGCTTTGA+TGG + tig0024181:73485-73504 Msa1415250:CDS 35.0%
! TGAATATCAGCAGCTTTGAT+GGG + tig0024181:73486-73505 Msa1415250:CDS 35.0%
! CTTCTTTTTGCGAACTACTT+GGG - tig0024181:73687-73706 None:intergenic 35.0%
! ACTTCTTTTTGCGAACTACT+TGG - tig0024181:73688-73707 None:intergenic 35.0%
CATTGCTCAATCCACAACAA+TGG + tig0024181:70586-70605 Msa1415250:exon 40.0%
! AGAAGAGTGTAGAAGAGAAG+GGG - tig0024181:70618-70637 None:intergenic 40.0%
! CAGAAGAGTGTAGAAGAGAA+GGG - tig0024181:70619-70638 None:intergenic 40.0%
AGCTCGAAATTGAGAGAGAA+AGG - tig0024181:70648-70667 None:intergenic 40.0%
GAAGAAGAAGAGAATTGGGT+TGG - tig0024181:70674-70693 None:intergenic 40.0%
TCTTCTTCGTTGTTCTCTCA+TGG + tig0024181:70686-70705 Msa1415250:CDS 40.0%
CTCCTACACCAATATTCATC+AGG + tig0024181:70841-70860 Msa1415250:CDS 40.0%
! TTGCGTTTTTGTTGGGTTTG+TGG + tig0024181:70925-70944 Msa1415250:intron 40.0%
! TGCGTTTTTGTTGGGTTTGT+GGG + tig0024181:70926-70945 Msa1415250:intron 40.0%
CACTTGAAGCAATTCAACAG+AGG - tig0024181:71100-71119 None:intergenic 40.0%
CCCTACAAATACAAATGGAG+AGG - tig0024181:71451-71470 None:intergenic 40.0%
AACATGTCTATAGAGAGGGA+TGG + tig0024181:71545-71564 Msa1415250:intron 40.0%
ACTTTAGGCACCTGAAAAGA+GGG - tig0024181:71723-71742 None:intergenic 40.0%
AACTTTAGGCACCTGAAAAG+AGG - tig0024181:71724-71743 None:intergenic 40.0%
GAAGCTGCACAAAATGCAAA+AGG + tig0024181:71774-71793 Msa1415250:CDS 40.0%
!! TTGATCTAGCACTGATCACT+GGG + tig0024181:71814-71833 Msa1415250:CDS 40.0%
GCTGGTATAGTTAGATGCAT+TGG + tig0024181:72102-72121 Msa1415250:intron 40.0%
TTTAAGAAAAAAGCCTGGCC+TGG - tig0024181:72236-72255 None:intergenic 40.0%
!! CCTGGCCTTTTAAGCTAAAT+AGG - tig0024181:72286-72305 None:intergenic 40.0%
! CCTATTTAGCTTAAAAGGCC+AGG + tig0024181:72283-72302 Msa1415250:intron 40.0%
!!! CTGTCATAGGCCTACTTTTT+AGG - tig0024181:72700-72719 None:intergenic 40.0%
CTAAAAAGTAGGCCTATGAC+AGG + tig0024181:72698-72717 Msa1415250:intron 40.0%
AATGTCTTGGAGTTAGGGAT+GGG - tig0024181:72773-72792 None:intergenic 40.0%
AAATGTCTTGGAGTTAGGGA+TGG - tig0024181:72774-72793 None:intergenic 40.0%
ATCCCTAACTCCAAGACATT+TGG + tig0024181:72773-72792 Msa1415250:intron 40.0%
AGCCAAATGTCTTGGAGTTA+GGG - tig0024181:72778-72797 None:intergenic 40.0%
TAGCCAAATGTCTTGGAGTT+AGG - tig0024181:72779-72798 None:intergenic 40.0%
CAAACAGTAGCCAAATGTCT+TGG - tig0024181:72786-72805 None:intergenic 40.0%
!!! CACGCTTTGTTTTGGTATGT+GGG - tig0024181:72950-72969 None:intergenic 40.0%
!!! ACACGCTTTGTTTTGGTATG+TGG - tig0024181:72951-72970 None:intergenic 40.0%
CGGAAAATTGAGGTCAAACA+CGG + tig0024181:73235-73254 Msa1415250:intron 40.0%
!! GAAGTCCTAAGTTGATAACG+CGG - tig0024181:73442-73461 None:intergenic 40.0%
CCTTGAAAATCTCTTGTCCT+AGG - tig0024181:73464-73483 None:intergenic 40.0%
! CCTAGGACAAGAGATTTTCA+AGG + tig0024181:73461-73480 Msa1415250:CDS 40.0%
GGGAATGGGAATTACAACAT+TGG + tig0024181:73506-73525 Msa1415250:CDS 40.0%
CTATACCAGATTTCAGCTCT+GGG - tig0024181:73553-73572 None:intergenic 40.0%
TATAGGTACACCTAGAGGAA+TGG + tig0024181:73568-73587 Msa1415250:CDS 40.0%
ATGCAGATATCCATTCCTCT+AGG - tig0024181:73581-73600 None:intergenic 40.0%
! TCCTTCTTGATCAGTTCTAG+CGG - tig0024181:73612-73631 None:intergenic 40.0%
GATCCAAAATCAAAGGGTAG+AGG + tig0024181:73725-73744 Msa1415250:CDS 40.0%
!! TCTCCTCTACCCTTTGATTT+TGG - tig0024181:73731-73750 None:intergenic 40.0%
CATTACATCGGAATGAAACG+AGG - tig0024181:73843-73862 None:intergenic 40.0%
! CAAAGTGCCCTTGTGTTTGA+GGG - tig0024181:70515-70534 None:intergenic 45.0%
! ACAAAGTGCCCTTGTGTTTG+AGG - tig0024181:70516-70535 None:intergenic 45.0%
GGGATATGGATAGCGTTGTT+TGG - tig0024181:70554-70573 None:intergenic 45.0%
! GCAGAAGAGTGTAGAAGAGA+AGG - tig0024181:70620-70639 None:intergenic 45.0%
CTCTCATGGAAACAACAGAC+TGG + tig0024181:70700-70719 Msa1415250:CDS 45.0%
TCTGTGAAAGCTGATGCTTC+TGG + tig0024181:70725-70744 Msa1415250:CDS 45.0%
!! TGATGCTTCTGGTGCTGTAT+TGG + tig0024181:70736-70755 Msa1415250:CDS 45.0%
! GGAGAAATCTGAAGCAGAGA+AGG + tig0024181:70760-70779 Msa1415250:CDS 45.0%
!! CTTGATCTAGCACTGATCAC+TGG + tig0024181:71813-71832 Msa1415250:CDS 45.0%
TTGACCTTCCCTGATCTTGA+AGG - tig0024181:71880-71899 None:intergenic 45.0%
! ATGAACTCTGATAAGCGCTG+AGG + tig0024181:72129-72148 Msa1415250:intron 45.0%
TCAAGGAGACTACTCCAAGT+AGG + tig0024181:72156-72175 Msa1415250:intron 45.0%
CAAGGAGACTACTCCAAGTA+GGG + tig0024181:72157-72176 Msa1415250:intron 45.0%
AGACTACTCCAAGTAGGGAT+GGG + tig0024181:72162-72181 Msa1415250:intron 45.0%
!! GGCTTAAGAGGCTTTTTGAG+AGG - tig0024181:72316-72335 None:intergenic 45.0%
CTTAAATAGGCCGGCCTAAT+AGG - tig0024181:72337-72356 None:intergenic 45.0%
! AGGCTTTTAAACAGGCTAGC+AGG + tig0024181:72642-72661 Msa1415250:intron 45.0%
! GACCTTCTGAAAGCCTGATA+CGG - tig0024181:72668-72687 None:intergenic 45.0%
TATCAGGCTTTCAGAAGGTC+AGG + tig0024181:72668-72687 Msa1415250:intron 45.0%
TTGGAGTTAGGGATGGGAAT+AGG - tig0024181:72767-72786 None:intergenic 45.0%
! TTAATATCGGTTAGCGGCTG+TGG + tig0024181:73189-73208 Msa1415250:intron 45.0%
!! CTTCGCGATCTTTGAGATTG+CGG + tig0024181:73215-73234 Msa1415250:intron 45.0%
ATTGAGGTCAAACACGGTTG+TGG + tig0024181:73241-73260 Msa1415250:intron 45.0%
AAAATATGGTCTGCAGACCG+TGG - tig0024181:73304-73323 None:intergenic 45.0%
!! CTAAGTTGATAACGCGGTCT+AGG - tig0024181:73436-73455 None:intergenic 45.0%
CTAGACCGCGTTATCAACTT+AGG + tig0024181:73434-73453 Msa1415250:CDS 45.0%
! ATCAGCAGCTTTGATGGGAA+TGG + tig0024181:73491-73510 Msa1415250:CDS 45.0%
! TCAGCAGCTTTGATGGGAAT+GGG + tig0024181:73492-73511 Msa1415250:CDS 45.0%
CCTATACCAGATTTCAGCTC+TGG - tig0024181:73554-73573 None:intergenic 45.0%
CCAGAGCTGAAATCTGGTAT+AGG + tig0024181:73551-73570 Msa1415250:CDS 45.0%
TCTGGTATAGGTACACCTAG+AGG + tig0024181:73563-73582 Msa1415250:CDS 45.0%
ACCGCTAGAACTGATCAAGA+AGG + tig0024181:73608-73627 Msa1415250:CDS 45.0%
ACTTCAACTCCCTCTCTGAA+GGG - tig0024181:73662-73681 None:intergenic 45.0%
AACTTCAACTCCCTCTCTGA+AGG - tig0024181:73663-73682 None:intergenic 45.0%
TGCTCGCTATGAGAGGGATA+TGG - tig0024181:70568-70587 None:intergenic 50.0%
GAGCAATGCTCGCTATGAGA+GGG - tig0024181:70574-70593 None:intergenic 50.0%
TGAGCAATGCTCGCTATGAG+AGG - tig0024181:70575-70594 None:intergenic 50.0%
AGGGGTTGTAGCCATTGTTG+TGG - tig0024181:70600-70619 None:intergenic 50.0%
!! TGCTTCTGGTGCTGTATTGG+TGG + tig0024181:70739-70758 Msa1415250:CDS 50.0%
GGCAGAGACCTGTTAAGACT+CGG + tig0024181:71835-71854 Msa1415250:CDS 50.0%
GCAGAGACCTGTTAAGACTC+GGG + tig0024181:71836-71855 Msa1415250:CDS 50.0%
CCTGATCTTGAAGGTGGCAA+CGG - tig0024181:71871-71890 None:intergenic 50.0%
CGTTGCCACCTTCAAGATCA+GGG + tig0024181:71869-71888 Msa1415250:CDS 50.0%
ACCTTCCCTGATCTTGAAGG+TGG - tig0024181:71877-71896 None:intergenic 50.0%
ATCAGGGAAGGTCAACCACT+TGG + tig0024181:71885-71904 Msa1415250:CDS 50.0%
TCAGGGAAGGTCAACCACTT+GGG + tig0024181:71886-71905 Msa1415250:CDS 50.0%
AGTGTCACAGCAATCCCAAG+TGG - tig0024181:71903-71922 None:intergenic 50.0%
GAGACTACTCCAAGTAGGGA+TGG + tig0024181:72161-72180 Msa1415250:intron 50.0%
CTCCAAGTAGGGATGGGAAT+AGG + tig0024181:72168-72187 Msa1415250:intron 50.0%
AGCTTAAAAGGCCAGGCCAT+AGG + tig0024181:72290-72309 Msa1415250:intron 50.0%
!! TTTTTGAGAGGCCTATGGCC+TGG - tig0024181:72304-72323 None:intergenic 50.0%
!! GAGGCTTTTTGAGAGGCCTA+TGG - tig0024181:72309-72328 None:intergenic 50.0%
GCCTCTTAAGCCTATTAGGC+CGG + tig0024181:72324-72343 Msa1415250:intron 50.0%
CAGGCTCAGGCCTAAAAAGT+AGG + tig0024181:72687-72706 Msa1415250:intron 50.0%
GTTAGGGATGGGAATAGGCT+AGG - tig0024181:72762-72781 None:intergenic 50.0%
!! TCAGCTCTGGGAACACAGTT+TGG - tig0024181:73541-73560 None:intergenic 50.0%
GTGTTCCCAGAGCTGAAATC+TGG + tig0024181:73545-73564 Msa1415250:CDS 50.0%
ATGGGTATGCCCTTCAGAGA+GGG + tig0024181:73650-73669 Msa1415250:CDS 50.0%
TTCCTCGCCCGAGTCTTAAC+AGG - tig0024181:71846-71865 None:intergenic 55.0%
CCGTTGCCACCTTCAAGATC+AGG + tig0024181:71868-71887 Msa1415250:CDS 55.0%
GCCACCTTCAAGATCAGGGA+AGG + tig0024181:71873-71892 Msa1415250:CDS 55.0%
GGGATTGCTGTGACACTCAG+AGG + tig0024181:71906-71925 Msa1415250:CDS 55.0%
!! ATAAGCGCTGAGGCGCTTCA+AGG + tig0024181:72139-72158 Msa1415250:intron 55.0%
GGCCTATTCCCATCCCTACT+TGG - tig0024181:72173-72192 None:intergenic 55.0%
GCCGGCCTAATAGGCTTAAG+AGG - tig0024181:72328-72347 None:intergenic 55.0%
GGCCGTATCAGGCTTTCAGA+AGG + tig0024181:72663-72682 Msa1415250:intron 55.0%
GCTTTCAGAAGGTCAGGCTC+AGG + tig0024181:72674-72693 Msa1415250:intron 55.0%
AGGCCTTGCAAAGCCTAGCT+CGG + tig0024181:72736-72755 Msa1415250:intron 55.0%
CATGGGTATGCCCTTCAGAG+AGG + tig0024181:73649-73668 Msa1415250:CDS 55.0%
GACCTGTTAAGACTCGGGCG+AGG + tig0024181:71841-71860 Msa1415250:CDS 60.0%
GGGATGGGAATAGGCCAGAC+CGG + tig0024181:72177-72196 Msa1415250:intron 60.0%
AATAGGCCAGACCGGCCTAC+AGG + tig0024181:72185-72204 Msa1415250:intron 60.0%
ATAGGCCAGACCGGCCTACA+GGG + tig0024181:72186-72205 Msa1415250:intron 60.0%
ACAGGCTAGCAGGCCGTATC+AGG + tig0024181:72652-72671 Msa1415250:intron 60.0%
GGCTTTGCAAGGCCTAAGCC+TGG - tig0024181:72731-72750 None:intergenic 60.0%
AGGCCGAGCTAGGCTTTGCA+AGG - tig0024181:72742-72761 None:intergenic 60.0%
GGAATAGGCTAGGCCGAGCT+AGG - tig0024181:72752-72771 None:intergenic 60.0%
TAGGCCAGACCGGCCTACAG+GGG + tig0024181:72187-72206 Msa1415250:intron 65.0%
CCTGTCGTAGGCTAGGCCGT+AGG - tig0024181:72213-72232 None:intergenic 65.0%
CCTACGGCCTAGCCTACGAC+AGG + tig0024181:72210-72229 Msa1415250:intron 65.0%
GTAGGCCTATGACAGGCCGC+AGG + tig0024181:72705-72724 Msa1415250:intron 65.0%
CAAGGCCTAAGCCTGGCCTG+CGG - tig0024181:72724-72743 None:intergenic 65.0%
TGGCTGTGGCCGCAACATCC+AGG - tig0024181:73284-73303 None:intergenic 65.0%
GGATGTTGCGGCCACAGCCA+CGG + tig0024181:73284-73303 Msa1415250:intron 65.0%
TGGTCTGCAGACCGTGGCTG+TGG - tig0024181:73298-73317 None:intergenic 65.0%
TAGGCCCCTGTAGGCCGGTC+TGG - tig0024181:72194-72213 None:intergenic 70.0%
GACCGGCCTACAGGGGCCTA+CGG + tig0024181:72194-72213 Msa1415250:intron 70.0%
GCTAGGCCGTAGGCCCCTGT+AGG - tig0024181:72203-72222 None:intergenic 70.0%
GGCCTAGCCTACGACAGGCC+AGG + tig0024181:72215-72234 Msa1415250:intron 70.0%
GGCCTGGCCTGTCGTAGGCT+AGG - tig0024181:72220-72239 None:intergenic 70.0%
AGCCTACGACAGGCCAGGCC+AGG + tig0024181:72220-72239 Msa1415250:intron 70.0%
AGCCTGGCCTGGCCTGTCGT+AGG - tig0024181:72225-72244 None:intergenic 70.0%
CCTGGCCTGCGGCCTGTCAT+AGG - tig0024181:72713-72732 None:intergenic 70.0%
CCTATGACAGGCCGCAGGCC+AGG + tig0024181:72710-72729 Msa1415250:intron 70.0%
ACAGGCCGCAGGCCAGGCTT+AGG + tig0024181:72716-72735 Msa1415250:intron 70.0%
GGCCGTAGGCCCCTGTAGGC+CGG - tig0024181:72199-72218 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0024181 gene 70511 74029 70511 ID=Msa1415250;Name=Msa1415250
tig0024181 mRNA 70511 74029 70511 ID=Msa1415250-mRNA-1;Parent=Msa1415250;Name=Msa1415250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=94|1|1|1|1|1|3|263|268
tig0024181 exon 70511 70862 70511 ID=Msa1415250-mRNA-1:exon:22247;Parent=Msa1415250-mRNA-1
tig0024181 exon 71732 71932 71732 ID=Msa1415250-mRNA-1:exon:22248;Parent=Msa1415250-mRNA-1
tig0024181 exon 73419 74029 73419 ID=Msa1415250-mRNA-1:exon:22249;Parent=Msa1415250-mRNA-1
tig0024181 five_prime_UTR 70511 70604 70511 ID=Msa1415250-mRNA-1:five_prime_utr;Parent=Msa1415250-mRNA-1
tig0024181 CDS 70605 70862 70605 ID=Msa1415250-mRNA-1:cds;Parent=Msa1415250-mRNA-1
tig0024181 CDS 71732 71932 71732 ID=Msa1415250-mRNA-1:cds;Parent=Msa1415250-mRNA-1
tig0024181 CDS 73419 73766 73419 ID=Msa1415250-mRNA-1:cds;Parent=Msa1415250-mRNA-1
tig0024181 three_prime_UTR 73767 74029 73767 ID=Msa1415250-mRNA-1:three_prime_utr;Parent=Msa1415250-mRNA-1
Gene Sequence

>Msa1415250

ATGGCTACAACCCCTTCTCTTCTACACTCTTCTGCTTCTTCCTTTCTCTCTCAATTTCGAGCTTTTCCAACCCAATTCTCTTCTTCTTCGTTGTTCTCTCATGGAAACAACAGACTGGTTTCTGTGAAAGCTGATGCTTCTGGTGCTGTATTGGTGGAGAAATCTGAAGCAGAGAAGGTTTATAGACTCAAAACAACTTACAATGAAAAAATTGTTCCTTTGCTTATGGAAGAATTCTCCTACACCAATATTCATCAGGTGCCTAAAGTTAAGAAGATTGTGGTAAACTGTGGTATTGGAGAAGCTGCACAAAATGCAAAAGGTTTGGATGCAGCAATACTTGATCTAGCACTGATCACTGGGCAGAGACCTGTTAAGACTCGGGCGAGGAATTCCGTTGCCACCTTCAAGATCAGGGAAGGTCAACCACTTGGGATTGCTGTGACACTCAGAGGAAAAATAATGTACTCATTCCTAGACCGCGTTATCAACTTAGGACTTCCTAGGACAAGAGATTTTCAAGGTTTGAATATCAGCAGCTTTGATGGGAATGGGAATTACAACATTGGTATTAAGGACCAAACTGTGTTCCCAGAGCTGAAATCTGGTATAGGTACACCTAGAGGAATGGATATCTGCATCTCAACAACCGCTAGAACTGATCAAGAAGGACAAAAATTATTGGCTCTCATGGGTATGCCCTTCAGAGAGGGAGTTGAAGTTACCCAAGTAGTTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGATCCAAAATCAAAGGGTAGAGGAGACAGAGCAAAGAAGTAA

Protein sequence

>Msa1415250

MATTPSLLHSSASSFLSQFRAFPTQFSSSSLFSHGNNRLVSVKADASGAVLVEKSEAEKVYRLKTTYNEKIVPLLMEEFSYTNIHQVPKVKKIVVNCGIGEAAQNAKGLDAAILDLALITGQRPVKTRARNSVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGLNISSFDGNGNYNIGIKDQTVFPELKSGIGTPRGMDICISTTARTDQEGQKLLALMGMPFREGVEVTQVVRKKKLKSHHFDPKSKGRGDRAKK*