AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1067430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067430 MtrunA17_Chr7g0248541 96.642 268 9 0 1 268 1 268 0.0 537
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067430 AT4G01310.1 69.084 262 75 3 4 262 3 261 8.39e-127 361

Find 80 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTCTACCCTTTGATTT+TGG 0.123648 7_2:+61992478 None:intergenic
TTCTAAATTATTTAGCTAAT+TGG 0.183742 7_2:-61992225 Msa1067430:three_prime_UTR
GAATTACAACATTGGTATTA+AGG 0.259700 7_2:-61992692 Msa1067430:CDS
ACAACGAAGAAGAAGAGAAT+TGG 0.342752 7_2:+61995530 None:intergenic
AAAACCAACCTGATGAATAT+TGG 0.349771 7_2:+61995357 None:intergenic
ACCACAATCTTCTTAACTTT+AGG 0.360933 7_2:+61994471 None:intergenic
TCTGTGAAAGCTGATGCTTC+TGG 0.361039 7_2:-61995481 Msa1067430:CDS
TTGAATATCAGCAGCTTTGA+TGG 0.369608 7_2:-61992721 Msa1067430:CDS
TCTTCTTCGTTGTTCTCTCA+TGG 0.377778 7_2:-61995520 Msa1067430:CDS
TCAGCTCTGGGAACACAGTT+TGG 0.396548 7_2:+61992668 None:intergenic
TGATGCTTCTGGTGCTGTAT+TGG 0.397654 7_2:-61995470 Msa1067430:CDS
TTCCTCGCCCGAGTCTTAAC+AGG 0.398404 7_2:+61994363 None:intergenic
GGGATATGGATAGCGTTGTT+TGG 0.399513 7_2:+61995655 None:intergenic
TTGACCTTCCCTGATCTTGA+AGG 0.406375 7_2:+61994329 None:intergenic
CCGTTGCCACCTTCAAGATC+AGG 0.407745 7_2:-61994338 Msa1067430:CDS
CCTATACCAGATTTCAGCTC+TGG 0.422499 7_2:+61992655 None:intergenic
TGCTCGCTATGAGAGGGATA+TGG 0.424260 7_2:+61995641 None:intergenic
CAACGAAGAAGAAGAGAATT+GGG 0.435438 7_2:+61995531 None:intergenic
GTGTTCCCAGAGCTGAAATC+TGG 0.439069 7_2:-61992661 Msa1067430:CDS
CTCCTACACCAATATTCATC+AGG 0.443040 7_2:-61995365 Msa1067430:intron
TGCACAAAATGCAAAAGGTT+TGG 0.451207 7_2:-61994427 Msa1067430:CDS
AGCTCGAAATTGAGAGAGAA+AGG 0.454415 7_2:+61995561 None:intergenic
TGCTTCTGGTGCTGTATTGG+TGG 0.457226 7_2:-61995467 Msa1067430:CDS
CTTGATCTAGCACTGATCAC+TGG 0.459647 7_2:-61994393 Msa1067430:CDS
CAGAAGAGTGTAGAAGAGAA+GGG 0.460397 7_2:+61995590 None:intergenic
CTAAGTTGATAACGCGGTCT+AGG 0.460763 7_2:+61992773 None:intergenic
GCAGAAGAGTGTAGAAGAGA+AGG 0.463128 7_2:+61995589 None:intergenic
CCTTGAAAATCTCTTGTCCT+AGG 0.465103 7_2:+61992745 None:intergenic
CAAAGTGCCCTTGTGTTTGA+GGG 0.465401 7_2:+61995694 None:intergenic
ATCAGCAGCTTTGATGGGAA+TGG 0.466511 7_2:-61992715 Msa1067430:CDS
TTATCAACTTAGGACTTCCT+AGG 0.473041 7_2:-61992762 Msa1067430:CDS
CTAGACCGCGTTATCAACTT+AGG 0.474580 7_2:-61992772 Msa1067430:CDS
CCAGAGCTGAAATCTGGTAT+AGG 0.476827 7_2:-61992655 Msa1067430:CDS
ATTGTGGTAAACTGTGGTAT+TGG 0.479842 7_2:-61994456 Msa1067430:CDS
ATCAGGGAAGGTCAACCACT+TGG 0.482119 7_2:-61994321 Msa1067430:CDS
ACAAAGTGCCCTTGTGTTTG+AGG 0.495680 7_2:+61995693 None:intergenic
TCAGCAGCTTTGATGGGAAT+GGG 0.496382 7_2:-61992714 Msa1067430:CDS
GAAGCTGCACAAAATGCAAA+AGG 0.526930 7_2:-61994432 Msa1067430:CDS
AACTTCAACTCCCTCTCTGA+AGG 0.527309 7_2:+61992546 None:intergenic
GAAGAAGAAGAGAATTGGGT+TGG 0.530860 7_2:+61995535 None:intergenic
TCAGAGATAATAATGAACTA+AGG 0.531953 7_2:-61992417 Msa1067430:three_prime_UTR
GATCCAAAATCAAAGGGTAG+AGG 0.531994 7_2:-61992481 Msa1067430:CDS
TTGATCTAGCACTGATCACT+GGG 0.532729 7_2:-61994392 Msa1067430:CDS
CCTGATCTTGAAGGTGGCAA+CGG 0.533580 7_2:+61994338 None:intergenic
TGAATATCAGCAGCTTTGAT+GGG 0.536920 7_2:-61992720 Msa1067430:CDS
AGGGGTTGTAGCCATTGTTG+TGG 0.537830 7_2:+61995609 None:intergenic
CGTTGCCACCTTCAAGATCA+GGG 0.545237 7_2:-61994337 Msa1067430:CDS
GGCAGAGACCTGTTAAGACT+CGG 0.549649 7_2:-61994371 Msa1067430:CDS
GGAGAAATCTGAAGCAGAGA+AGG 0.557353 7_2:-61995446 Msa1067430:CDS
AGAAGAGTGTAGAAGAGAAG+GGG 0.566918 7_2:+61995591 None:intergenic
TATAGGTACACCTAGAGGAA+TGG 0.575467 7_2:-61992638 Msa1067430:CDS
CTCTCATGGAAACAACAGAC+TGG 0.584243 7_2:-61995506 Msa1067430:CDS
ACCTTCCCTGATCTTGAAGG+TGG 0.584511 7_2:+61994332 None:intergenic
GAGAATTCTTCCATAAGCAA+AGG 0.587605 7_2:+61995385 None:intergenic
ATGCAGATATCCATTCCTCT+AGG 0.588286 7_2:+61992628 None:intergenic
TGAGCAATGCTCGCTATGAG+AGG 0.592964 7_2:+61995634 None:intergenic
CTATACCAGATTTCAGCTCT+GGG 0.594159 7_2:+61992656 None:intergenic
TCCTTCTTGATCAGTTCTAG+CGG 0.602168 7_2:+61992597 None:intergenic
ATGGGTATGCCCTTCAGAGA+GGG 0.602286 7_2:-61992556 Msa1067430:CDS
GCAGAGACCTGTTAAGACTC+GGG 0.607855 7_2:-61994370 Msa1067430:CDS
AAGAAGATTGTGGTAAACTG+TGG 0.615390 7_2:-61994462 Msa1067430:CDS
ACTTCAACTCCCTCTCTGAA+GGG 0.615523 7_2:+61992547 None:intergenic
GGGATTGCTGTGACACTCAG+AGG 0.615781 7_2:-61994300 Msa1067430:CDS
TCAGGGAAGGTCAACCACTT+GGG 0.616213 7_2:-61994320 Msa1067430:CDS
GCCACCTTCAAGATCAGGGA+AGG 0.616261 7_2:-61994333 Msa1067430:CDS
GAGCAATGCTCGCTATGAGA+GGG 0.619636 7_2:+61995635 None:intergenic
AAAATTTACCCTCAAACACA+AGG 0.621693 7_2:-61995702 None:intergenic
GGGAATGGGAATTACAACAT+TGG 0.626171 7_2:-61992700 Msa1067430:CDS
ACCGCTAGAACTGATCAAGA+AGG 0.627372 7_2:-61992598 Msa1067430:CDS
TCAATAATATTACATTACAT+CGG 0.628786 7_2:+61992354 None:intergenic
GCCTAAAGTTAAGAAGATTG+TGG 0.634345 7_2:-61994472 Msa1067430:CDS
GACCTGTTAAGACTCGGGCG+AGG 0.646443 7_2:-61994365 Msa1067430:CDS
AACCTGATGAATATTGGTGT+AGG 0.659149 7_2:+61995363 None:intergenic
CATGGGTATGCCCTTCAGAG+AGG 0.660728 7_2:-61992557 Msa1067430:CDS
CATTGCTCAATCCACAACAA+TGG 0.671751 7_2:-61995620 Msa1067430:exon
CATTACATCGGAATGAAACG+AGG 0.684935 7_2:+61992366 None:intergenic
AGTGTCACAGCAATCCCAAG+TGG 0.690222 7_2:+61994306 None:intergenic
AAATTTACCCTCAAACACAA+GGG 0.705329 7_2:-61995701 None:intergenic
TCTGGTATAGGTACACCTAG+AGG 0.713169 7_2:-61992643 Msa1067430:CDS
GAAGTCCTAAGTTGATAACG+CGG 0.748246 7_2:+61992767 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAAATAGTATAAAAAAT+GGG + chr7_2:61993716-61993735 None:intergenic 10.0%
!! ATACTAAATAGTATAAAAAA+TGG + chr7_2:61993717-61993736 None:intergenic 10.0%
!! ATTATTCATATTACTTAAAT+AGG + chr7_2:61994038-61994057 None:intergenic 10.0%
!! ACAAAATAATATTTGATCAT+TGG + chr7_2:61994583-61994602 None:intergenic 15.0%
!! TAATGCAAAATACTATAATT+TGG + chr7_2:61994828-61994847 None:intergenic 15.0%
!!! ATTCTTATGGTTTTAAAATA+TGG + chr7_2:61995006-61995025 None:intergenic 15.0%
!! TCAATAATATTACATTACAT+CGG + chr7_2:61995543-61995562 None:intergenic 15.0%
!! TTCTAAATTATTTAGCTAAT+TGG - chr7_2:61995669-61995688 Msa1067430:five_prime_UTR 15.0%
!!! AATTGGACTATTAATATTTT+AGG - chr7_2:61995686-61995705 Msa1067430:five_prime_UTR 15.0%
!!! TTTTTTGGTTTTGGTTTAAT+GGG - chr7_2:61992651-61992670 Msa1067430:CDS 20.0%
!!! GCATTTTCAAAAATTCATTT+TGG + chr7_2:61993097-61993116 None:intergenic 20.0%
!!! ATGACATTAAGTTGATAAAT+CGG - chr7_2:61993165-61993184 Msa1067430:intron 20.0%
!!! AATTTGAAACTAAGTGAATA+AGG - chr7_2:61993193-61993212 Msa1067430:intron 20.0%
!! GTTAACAAAATATATTCACT+AGG + chr7_2:61993657-61993676 None:intergenic 20.0%
!!! TTTAGTATTTAGAACAATGT+CGG - chr7_2:61993729-61993748 Msa1067430:intron 20.0%
!! TAAAGATGTTCATAAGATAT+AGG - chr7_2:61994310-61994329 Msa1067430:CDS 20.0%
!! TATTTGAATATGTTGTCATT+TGG - chr7_2:61994752-61994771 Msa1067430:intron 20.0%
!! GCATGTATAATATATTCTTA+TGG + chr7_2:61995019-61995038 None:intergenic 20.0%
!!! GATTCTTTTTGTAAAAGATA+TGG - chr7_2:61995561-61995580 Msa1067430:CDS 20.0%
!! CCATATAAAAAATTGATTGA+TGG + chr7_2:61995601-61995620 None:intergenic 20.0%
!!! CCATCAATCAATTTTTTATA+TGG - chr7_2:61995598-61995617 Msa1067430:CDS 20.0%
! AAAAATTGTTCCTTTGCTTA+TGG - chr7_2:61992499-61992518 Msa1067430:CDS 25.0%
!!! AGGTTGGTTTTTGTTAAATT+TGG - chr7_2:61992549-61992568 Msa1067430:CDS 25.0%
!!! TTTGATTTTGCGTTTTTGTT+GGG - chr7_2:61992606-61992625 Msa1067430:CDS 25.0%
!!! GTTAAAGTTTGAGTCTTTTT+TGG - chr7_2:61992636-61992655 Msa1067430:CDS 25.0%
!!! CTTTTTTGGTTTTGGTTTAA+TGG - chr7_2:61992650-61992669 Msa1067430:CDS 25.0%
!!! TTTTTGGTTTTGGTTTAATG+GGG - chr7_2:61992652-61992671 Msa1067430:CDS 25.0%
! TTGCAATATCCATAATTTGA+GGG + chr7_2:61992721-61992740 None:intergenic 25.0%
! TTTGCAATATCCATAATTTG+AGG + chr7_2:61992722-61992741 None:intergenic 25.0%
!!! TGATTTTGACTTAAATGAGT+TGG - chr7_2:61992863-61992882 Msa1067430:intron 25.0%
!! AATTGATTCTACTTAAAGAG+AGG + chr7_2:61992982-61993001 None:intergenic 25.0%
! CTCTTTAAGTAGAATCAATT+CGG - chr7_2:61992982-61993001 Msa1067430:intron 25.0%
!! ACAGTTAAAATTGATTCTAG+AGG + chr7_2:61993046-61993065 None:intergenic 25.0%
!!! TGACATTAAGTTGATAAATC+GGG - chr7_2:61993166-61993185 Msa1067430:intron 25.0%
!!! TTAGATTCTAGTTAATTTGC+TGG - chr7_2:61993772-61993791 Msa1067430:intron 25.0%
!!! GCTTTTTTCTTAAATAGAGA+AGG - chr7_2:61993930-61993949 Msa1067430:intron 25.0%
!! TAAAGCCTATTTAGCTTAAA+AGG - chr7_2:61993966-61993985 Msa1067430:intron 25.0%
! TTCATATTACTTAAATAGGC+CGG + chr7_2:61994034-61994053 None:intergenic 25.0%
! CAATGTGATCTAAGTTTAAA+TGG + chr7_2:61994284-61994303 None:intergenic 25.0%
!! TAAGATATAGGCTTTTAAAC+AGG - chr7_2:61994322-61994341 Msa1067430:CDS 25.0%
!!! GTAATAGAAAGTGTTTACAT+AGG - chr7_2:61994601-61994620 Msa1067430:intron 25.0%
!! ATTCTCTTTTATCTTGAGAA+TGG - chr7_2:61994665-61994684 Msa1067430:intron 25.0%
! TAACACAGGATGTTTAATAT+CGG - chr7_2:61994864-61994883 Msa1067430:intron 25.0%
!! ACCAATAGGTATTAGATTTT+GGG + chr7_2:61995074-61995093 None:intergenic 25.0%
!! AACCAATAGGTATTAGATTT+TGG + chr7_2:61995075-61995094 None:intergenic 25.0%
! GAATTACAACATTGGTATTA+AGG - chr7_2:61995202-61995221 Msa1067430:intron 25.0%
! TCAAGAAGGACAAAAATTAT+TGG - chr7_2:61995310-61995329 Msa1067430:intron 25.0%
!!! TCATTTTGATCCAAAATCAA+AGG - chr7_2:61995406-61995425 Msa1067430:CDS 25.0%
!!! CATTTTGATCCAAAATCAAA+GGG - chr7_2:61995407-61995426 Msa1067430:CDS 25.0%
! TCAGAGATAATAATGAACTA+AGG - chr7_2:61995477-61995496 Msa1067430:CDS 25.0%
AAAACCAACCTGATGAATAT+TGG + chr7_2:61992540-61992559 None:intergenic 30.0%
!!! TTTGGACTGTTTTTTTGTGA+TGG - chr7_2:61992567-61992586 Msa1067430:CDS 30.0%
!!! TTGGACTGTTTTTTTGTGAT+GGG - chr7_2:61992568-61992587 Msa1067430:CDS 30.0%
!! GTTTGATTTTGCGTTTTTGT+TGG - chr7_2:61992605-61992624 Msa1067430:CDS 30.0%
!!! GTTTGAGTCTTTTTTGGTTT+TGG - chr7_2:61992642-61992661 Msa1067430:CDS 30.0%
AGGGACTATATTGATACATA+TGG + chr7_2:61992702-61992721 None:intergenic 30.0%
CAATATAGTCCCTCAAATTA+TGG - chr7_2:61992709-61992728 Msa1067430:CDS 30.0%
AATTGCTTCAAGTGTATGTT+TGG - chr7_2:61992794-61992813 Msa1067430:intron 30.0%
!!! TTTTGACTTAAATGAGTTGG+AGG - chr7_2:61992866-61992885 Msa1067430:intron 30.0%
!! GACATTAAGTTGATAAATCG+GGG - chr7_2:61993167-61993186 Msa1067430:intron 30.0%
! TTGATAACATGTCTATAGAG+AGG - chr7_2:61993228-61993247 Msa1067430:intron 30.0%
TGATAACATGTCTATAGAGA+GGG - chr7_2:61993229-61993248 Msa1067430:intron 30.0%
! AGTTGGTACTCGAAATTAAA+GGG + chr7_2:61993328-61993347 None:intergenic 30.0%
!! AAGTTGGTACTCGAAATTAA+AGG + chr7_2:61993329-61993348 None:intergenic 30.0%
CTTAGAGTAAATACTCAAGT+TGG + chr7_2:61993345-61993364 None:intergenic 30.0%
!! TATTGTTTTTCCCTCTTTTC+AGG - chr7_2:61993398-61993417 Msa1067430:intron 30.0%
ACCACAATCTTCTTAACTTT+AGG + chr7_2:61993426-61993445 None:intergenic 30.0%
CAAAATATATTCACTAGGCA+AGG + chr7_2:61993652-61993671 None:intergenic 30.0%
CTCTATTTAAGAAAAAAGCC+TGG + chr7_2:61993929-61993948 None:intergenic 30.0%
!! ATAGGCTTTAAAAAAAGCCT+AGG + chr7_2:61993956-61993975 None:intergenic 30.0%
! ATAATCAACACGAGGTTTTT+GGG + chr7_2:61994220-61994239 None:intergenic 30.0%
TGTGTAGTATAATGCATCTT+TGG - chr7_2:61994500-61994519 Msa1067430:intron 30.0%
!!! TCATTTTACACGCTTTGTTT+TGG + chr7_2:61994646-61994665 None:intergenic 30.0%
!!! TAGGTATTAGATTTTGGGTT+CGG + chr7_2:61995069-61995088 None:intergenic 30.0%
ACCCAAAATCTAATACCTAT+TGG - chr7_2:61995070-61995089 Msa1067430:intron 30.0%
!! ACAAAAATTATTGGCTCTCA+TGG - chr7_2:61995319-61995338 Msa1067430:intron 30.0%
!! CAAAAATTATTGGCTCTCAT+GGG - chr7_2:61995320-61995339 Msa1067430:intron 30.0%
CAACGAAGAAGAAGAGAATT+GGG + chr7_2:61992366-61992385 None:intergenic 35.0%
ACAACGAAGAAGAAGAGAAT+TGG + chr7_2:61992367-61992386 None:intergenic 35.0%
GAGAATTCTTCCATAAGCAA+AGG + chr7_2:61992512-61992531 None:intergenic 35.0%
AACCTGATGAATATTGGTGT+AGG + chr7_2:61992534-61992553 None:intergenic 35.0%
TACACCAATATTCATCAGGT+TGG - chr7_2:61992533-61992552 Msa1067430:CDS 35.0%
ACTTGAAGCAATTCAACAGA+GGG + chr7_2:61992787-61992806 None:intergenic 35.0%
GGTTCTATGTTGACAAGAAT+TGG - chr7_2:61992815-61992834 Msa1067430:intron 35.0%
! GAGGTAAAGTGATTTGTGTT+CGG - chr7_2:61992885-61992904 Msa1067430:intron 35.0%
TTAAGTAGAATCAATTCGGC+AGG - chr7_2:61992986-61993005 Msa1067430:intron 35.0%
TCCTCTCCATTTGTATTTGT+AGG - chr7_2:61993135-61993154 Msa1067430:intron 35.0%
CCTCTCCATTTGTATTTGTA+GGG - chr7_2:61993136-61993155 Msa1067430:intron 35.0%
CTAGTCCCTACAAATACAAA+TGG + chr7_2:61993144-61993163 None:intergenic 35.0%
GCCTAAAGTTAAGAAGATTG+TGG - chr7_2:61993422-61993441 Msa1067430:intron 35.0%
AAGAAGATTGTGGTAAACTG+TGG - chr7_2:61993432-61993451 Msa1067430:intron 35.0%
ATTGTGGTAAACTGTGGTAT+TGG - chr7_2:61993438-61993457 Msa1067430:intron 35.0%
TGCACAAAATGCAAAAGGTT+TGG - chr7_2:61993467-61993486 Msa1067430:intron 35.0%
TTCTTAAATAGAGAAGGCCT+AGG - chr7_2:61993936-61993955 Msa1067430:intron 35.0%
AAAAGCCTCTTAAGCCTATT+AGG - chr7_2:61994008-61994027 Msa1067430:intron 35.0%
! GATAATCAACACGAGGTTTT+TGG + chr7_2:61994221-61994240 None:intergenic 35.0%
!! CTCTTTTGATAATCAACACG+AGG + chr7_2:61994228-61994247 None:intergenic 35.0%
! TGGATCACATGTAAGCTTTT+TGG - chr7_2:61994520-61994539 Msa1067430:intron 35.0%
!!! ACATGTAAGCTTTTTGGAGT+TGG - chr7_2:61994526-61994545 Msa1067430:intron 35.0%
!!! CATGTAAGCTTTTTGGAGTT+GGG - chr7_2:61994527-61994546 Msa1067430:intron 35.0%
TTAGCCTCATATTCTAACAC+AGG - chr7_2:61994850-61994869 Msa1067430:intron 35.0%
ACATCCTGTGTTAGAATATG+AGG + chr7_2:61994857-61994876 None:intergenic 35.0%
! GGATGTTTAATATCGGTTAG+CGG - chr7_2:61994871-61994890 Msa1067430:intron 35.0%
! TTTGAGATTGCGGAAAATTG+AGG - chr7_2:61994913-61994932 Msa1067430:intron 35.0%
GAGACATCACATAAAAAACC+TGG - chr7_2:61994951-61994970 Msa1067430:intron 35.0%
CATAAAAAACCTGGATGTTG+CGG - chr7_2:61994960-61994979 Msa1067430:intron 35.0%
TCTGTCGAATATCAACCAAT+AGG + chr7_2:61995088-61995107 None:intergenic 35.0%
TTATCAACTTAGGACTTCCT+AGG - chr7_2:61995132-61995151 Msa1067430:intron 35.0%
! TTGAATATCAGCAGCTTTGA+TGG - chr7_2:61995173-61995192 Msa1067430:intron 35.0%
! TGAATATCAGCAGCTTTGAT+GGG - chr7_2:61995174-61995193 Msa1067430:intron 35.0%
! CTTCTTTTTGCGAACTACTT+GGG + chr7_2:61995375-61995394 None:intergenic 35.0%
! ACTTCTTTTTGCGAACTACT+TGG + chr7_2:61995376-61995395 None:intergenic 35.0%
CATTGCTCAATCCACAACAA+TGG - chr7_2:61992274-61992293 Msa1067430:three_prime_UTR 40.0%
! AGAAGAGTGTAGAAGAGAAG+GGG + chr7_2:61992306-61992325 None:intergenic 40.0%
! CAGAAGAGTGTAGAAGAGAA+GGG + chr7_2:61992307-61992326 None:intergenic 40.0%
AGCTCGAAATTGAGAGAGAA+AGG + chr7_2:61992336-61992355 None:intergenic 40.0%
GAAGAAGAAGAGAATTGGGT+TGG + chr7_2:61992362-61992381 None:intergenic 40.0%
TCTTCTTCGTTGTTCTCTCA+TGG - chr7_2:61992374-61992393 Msa1067430:three_prime_UTR 40.0%
CTCCTACACCAATATTCATC+AGG - chr7_2:61992529-61992548 Msa1067430:CDS 40.0%
! TTGCGTTTTTGTTGGGTTTG+TGG - chr7_2:61992613-61992632 Msa1067430:CDS 40.0%
! TGCGTTTTTGTTGGGTTTGT+GGG - chr7_2:61992614-61992633 Msa1067430:CDS 40.0%
CACTTGAAGCAATTCAACAG+AGG + chr7_2:61992788-61992807 None:intergenic 40.0%
CCCTACAAATACAAATGGAG+AGG + chr7_2:61993139-61993158 None:intergenic 40.0%
AACATGTCTATAGAGAGGGA+TGG - chr7_2:61993233-61993252 Msa1067430:intron 40.0%
ACTTTAGGCACCTGAAAAGA+GGG + chr7_2:61993411-61993430 None:intergenic 40.0%
AACTTTAGGCACCTGAAAAG+AGG + chr7_2:61993412-61993431 None:intergenic 40.0%
GAAGCTGCACAAAATGCAAA+AGG - chr7_2:61993462-61993481 Msa1067430:intron 40.0%
!! TTGATCTAGCACTGATCACT+GGG - chr7_2:61993502-61993521 Msa1067430:intron 40.0%
GCTGGTATAGTTAGATGCAT+TGG - chr7_2:61993790-61993809 Msa1067430:intron 40.0%
TTTAAGAAAAAAGCCTGGCC+TGG + chr7_2:61993924-61993943 None:intergenic 40.0%
!! CCTGGCCTTTTAAGCTAAAT+AGG + chr7_2:61993974-61993993 None:intergenic 40.0%
! CCTATTTAGCTTAAAAGGCC+AGG - chr7_2:61993971-61993990 Msa1067430:intron 40.0%
!!! CTGTCATAGGCCTACTTTTT+AGG + chr7_2:61994388-61994407 None:intergenic 40.0%
CTAAAAAGTAGGCCTATGAC+AGG - chr7_2:61994386-61994405 Msa1067430:CDS 40.0%
AATGTCTTGGAGTTAGGGAT+GGG + chr7_2:61994461-61994480 None:intergenic 40.0%
AAATGTCTTGGAGTTAGGGA+TGG + chr7_2:61994462-61994481 None:intergenic 40.0%
ATCCCTAACTCCAAGACATT+TGG - chr7_2:61994461-61994480 Msa1067430:CDS 40.0%
AGCCAAATGTCTTGGAGTTA+GGG + chr7_2:61994466-61994485 None:intergenic 40.0%
TAGCCAAATGTCTTGGAGTT+AGG + chr7_2:61994467-61994486 None:intergenic 40.0%
CAAACAGTAGCCAAATGTCT+TGG + chr7_2:61994474-61994493 None:intergenic 40.0%
!!! CACGCTTTGTTTTGGTATGT+GGG + chr7_2:61994638-61994657 None:intergenic 40.0%
!!! ACACGCTTTGTTTTGGTATG+TGG + chr7_2:61994639-61994658 None:intergenic 40.0%
CGGAAAATTGAGGTCAAACA+CGG - chr7_2:61994923-61994942 Msa1067430:intron 40.0%
!! GAAGTCCTAAGTTGATAACG+CGG + chr7_2:61995130-61995149 None:intergenic 40.0%
CCTTGAAAATCTCTTGTCCT+AGG + chr7_2:61995152-61995171 None:intergenic 40.0%
! CCTAGGACAAGAGATTTTCA+AGG - chr7_2:61995149-61995168 Msa1067430:intron 40.0%
GGGAATGGGAATTACAACAT+TGG - chr7_2:61995194-61995213 Msa1067430:intron 40.0%
CTATACCAGATTTCAGCTCT+GGG + chr7_2:61995241-61995260 None:intergenic 40.0%
TATAGGTACACCTAGAGGAA+TGG - chr7_2:61995256-61995275 Msa1067430:intron 40.0%
ATGCAGATATCCATTCCTCT+AGG + chr7_2:61995269-61995288 None:intergenic 40.0%
! TCCTTCTTGATCAGTTCTAG+CGG + chr7_2:61995300-61995319 None:intergenic 40.0%
GATCCAAAATCAAAGGGTAG+AGG - chr7_2:61995413-61995432 Msa1067430:CDS 40.0%
!! TCTCCTCTACCCTTTGATTT+TGG + chr7_2:61995419-61995438 None:intergenic 40.0%
CATTACATCGGAATGAAACG+AGG + chr7_2:61995531-61995550 None:intergenic 40.0%
! CAAAGTGCCCTTGTGTTTGA+GGG + chr7_2:61992203-61992222 None:intergenic 45.0%
! ACAAAGTGCCCTTGTGTTTG+AGG + chr7_2:61992204-61992223 None:intergenic 45.0%
GGGATATGGATAGCGTTGTT+TGG + chr7_2:61992242-61992261 None:intergenic 45.0%
! GCAGAAGAGTGTAGAAGAGA+AGG + chr7_2:61992308-61992327 None:intergenic 45.0%
CTCTCATGGAAACAACAGAC+TGG - chr7_2:61992388-61992407 Msa1067430:three_prime_UTR 45.0%
TCTGTGAAAGCTGATGCTTC+TGG - chr7_2:61992413-61992432 Msa1067430:three_prime_UTR 45.0%
!! TGATGCTTCTGGTGCTGTAT+TGG - chr7_2:61992424-61992443 Msa1067430:three_prime_UTR 45.0%
! GGAGAAATCTGAAGCAGAGA+AGG - chr7_2:61992448-61992467 Msa1067430:exon 45.0%
!! CTTGATCTAGCACTGATCAC+TGG - chr7_2:61993501-61993520 Msa1067430:intron 45.0%
TTGACCTTCCCTGATCTTGA+AGG + chr7_2:61993568-61993587 None:intergenic 45.0%
! ATGAACTCTGATAAGCGCTG+AGG - chr7_2:61993817-61993836 Msa1067430:intron 45.0%
TCAAGGAGACTACTCCAAGT+AGG - chr7_2:61993844-61993863 Msa1067430:intron 45.0%
CAAGGAGACTACTCCAAGTA+GGG - chr7_2:61993845-61993864 Msa1067430:intron 45.0%
AGACTACTCCAAGTAGGGAT+GGG - chr7_2:61993850-61993869 Msa1067430:intron 45.0%
!! GGCTTAAGAGGCTTTTTGAG+AGG + chr7_2:61994004-61994023 None:intergenic 45.0%
CTTAAATAGGCCGGCCTAAT+AGG + chr7_2:61994025-61994044 None:intergenic 45.0%
! AGGCTTTTAAACAGGCTAGC+AGG - chr7_2:61994330-61994349 Msa1067430:CDS 45.0%
! GACCTTCTGAAAGCCTGATA+CGG + chr7_2:61994356-61994375 None:intergenic 45.0%
TATCAGGCTTTCAGAAGGTC+AGG - chr7_2:61994356-61994375 Msa1067430:CDS 45.0%
TTGGAGTTAGGGATGGGAAT+AGG + chr7_2:61994455-61994474 None:intergenic 45.0%
! TTAATATCGGTTAGCGGCTG+TGG - chr7_2:61994877-61994896 Msa1067430:intron 45.0%
!! CTTCGCGATCTTTGAGATTG+CGG - chr7_2:61994903-61994922 Msa1067430:intron 45.0%
ATTGAGGTCAAACACGGTTG+TGG - chr7_2:61994929-61994948 Msa1067430:intron 45.0%
AAAATATGGTCTGCAGACCG+TGG + chr7_2:61994992-61995011 None:intergenic 45.0%
!! CTAAGTTGATAACGCGGTCT+AGG + chr7_2:61995124-61995143 None:intergenic 45.0%
CTAGACCGCGTTATCAACTT+AGG - chr7_2:61995122-61995141 Msa1067430:intron 45.0%
! ATCAGCAGCTTTGATGGGAA+TGG - chr7_2:61995179-61995198 Msa1067430:intron 45.0%
! TCAGCAGCTTTGATGGGAAT+GGG - chr7_2:61995180-61995199 Msa1067430:intron 45.0%
CCTATACCAGATTTCAGCTC+TGG + chr7_2:61995242-61995261 None:intergenic 45.0%
CCAGAGCTGAAATCTGGTAT+AGG - chr7_2:61995239-61995258 Msa1067430:intron 45.0%
TCTGGTATAGGTACACCTAG+AGG - chr7_2:61995251-61995270 Msa1067430:intron 45.0%
ACCGCTAGAACTGATCAAGA+AGG - chr7_2:61995296-61995315 Msa1067430:intron 45.0%
ACTTCAACTCCCTCTCTGAA+GGG + chr7_2:61995350-61995369 None:intergenic 45.0%
AACTTCAACTCCCTCTCTGA+AGG + chr7_2:61995351-61995370 None:intergenic 45.0%
TGCTCGCTATGAGAGGGATA+TGG + chr7_2:61992256-61992275 None:intergenic 50.0%
GAGCAATGCTCGCTATGAGA+GGG + chr7_2:61992262-61992281 None:intergenic 50.0%
TGAGCAATGCTCGCTATGAG+AGG + chr7_2:61992263-61992282 None:intergenic 50.0%
AGGGGTTGTAGCCATTGTTG+TGG + chr7_2:61992288-61992307 None:intergenic 50.0%
!! TGCTTCTGGTGCTGTATTGG+TGG - chr7_2:61992427-61992446 Msa1067430:three_prime_UTR 50.0%
GGCAGAGACCTGTTAAGACT+CGG - chr7_2:61993523-61993542 Msa1067430:intron 50.0%
GCAGAGACCTGTTAAGACTC+GGG - chr7_2:61993524-61993543 Msa1067430:intron 50.0%
CCTGATCTTGAAGGTGGCAA+CGG + chr7_2:61993559-61993578 None:intergenic 50.0%
CGTTGCCACCTTCAAGATCA+GGG - chr7_2:61993557-61993576 Msa1067430:intron 50.0%
ACCTTCCCTGATCTTGAAGG+TGG + chr7_2:61993565-61993584 None:intergenic 50.0%
ATCAGGGAAGGTCAACCACT+TGG - chr7_2:61993573-61993592 Msa1067430:intron 50.0%
TCAGGGAAGGTCAACCACTT+GGG - chr7_2:61993574-61993593 Msa1067430:intron 50.0%
AGTGTCACAGCAATCCCAAG+TGG + chr7_2:61993591-61993610 None:intergenic 50.0%
GAGACTACTCCAAGTAGGGA+TGG - chr7_2:61993849-61993868 Msa1067430:intron 50.0%
CTCCAAGTAGGGATGGGAAT+AGG - chr7_2:61993856-61993875 Msa1067430:intron 50.0%
AGCTTAAAAGGCCAGGCCAT+AGG - chr7_2:61993978-61993997 Msa1067430:intron 50.0%
!! TTTTTGAGAGGCCTATGGCC+TGG + chr7_2:61993992-61994011 None:intergenic 50.0%
!! GAGGCTTTTTGAGAGGCCTA+TGG + chr7_2:61993997-61994016 None:intergenic 50.0%
GCCTCTTAAGCCTATTAGGC+CGG - chr7_2:61994012-61994031 Msa1067430:intron 50.0%
CAGGCTCAGGCCTAAAAAGT+AGG - chr7_2:61994375-61994394 Msa1067430:CDS 50.0%
GTTAGGGATGGGAATAGGCT+AGG + chr7_2:61994450-61994469 None:intergenic 50.0%
!! TCAGCTCTGGGAACACAGTT+TGG + chr7_2:61995229-61995248 None:intergenic 50.0%
GTGTTCCCAGAGCTGAAATC+TGG - chr7_2:61995233-61995252 Msa1067430:intron 50.0%
ATGGGTATGCCCTTCAGAGA+GGG - chr7_2:61995338-61995357 Msa1067430:intron 50.0%
TTCCTCGCCCGAGTCTTAAC+AGG + chr7_2:61993534-61993553 None:intergenic 55.0%
CCGTTGCCACCTTCAAGATC+AGG - chr7_2:61993556-61993575 Msa1067430:intron 55.0%
GCCACCTTCAAGATCAGGGA+AGG - chr7_2:61993561-61993580 Msa1067430:intron 55.0%
GGGATTGCTGTGACACTCAG+AGG - chr7_2:61993594-61993613 Msa1067430:intron 55.0%
!! ATAAGCGCTGAGGCGCTTCA+AGG - chr7_2:61993827-61993846 Msa1067430:intron 55.0%
GGCCTATTCCCATCCCTACT+TGG + chr7_2:61993861-61993880 None:intergenic 55.0%
GCCGGCCTAATAGGCTTAAG+AGG + chr7_2:61994016-61994035 None:intergenic 55.0%
GGCCGTATCAGGCTTTCAGA+AGG - chr7_2:61994351-61994370 Msa1067430:CDS 55.0%
GCTTTCAGAAGGTCAGGCTC+AGG - chr7_2:61994362-61994381 Msa1067430:CDS 55.0%
AGGCCTTGCAAAGCCTAGCT+CGG - chr7_2:61994424-61994443 Msa1067430:CDS 55.0%
CATGGGTATGCCCTTCAGAG+AGG - chr7_2:61995337-61995356 Msa1067430:intron 55.0%
GACCTGTTAAGACTCGGGCG+AGG - chr7_2:61993529-61993548 Msa1067430:intron 60.0%
GGGATGGGAATAGGCCAGAC+CGG - chr7_2:61993865-61993884 Msa1067430:intron 60.0%
AATAGGCCAGACCGGCCTAC+AGG - chr7_2:61993873-61993892 Msa1067430:intron 60.0%
ATAGGCCAGACCGGCCTACA+GGG - chr7_2:61993874-61993893 Msa1067430:intron 60.0%
ACAGGCTAGCAGGCCGTATC+AGG - chr7_2:61994340-61994359 Msa1067430:CDS 60.0%
GGCTTTGCAAGGCCTAAGCC+TGG + chr7_2:61994419-61994438 None:intergenic 60.0%
AGGCCGAGCTAGGCTTTGCA+AGG + chr7_2:61994430-61994449 None:intergenic 60.0%
GGAATAGGCTAGGCCGAGCT+AGG + chr7_2:61994440-61994459 None:intergenic 60.0%
TAGGCCAGACCGGCCTACAG+GGG - chr7_2:61993875-61993894 Msa1067430:intron 65.0%
CCTGTCGTAGGCTAGGCCGT+AGG + chr7_2:61993901-61993920 None:intergenic 65.0%
CCTACGGCCTAGCCTACGAC+AGG - chr7_2:61993898-61993917 Msa1067430:intron 65.0%
GTAGGCCTATGACAGGCCGC+AGG - chr7_2:61994393-61994412 Msa1067430:CDS 65.0%
CAAGGCCTAAGCCTGGCCTG+CGG + chr7_2:61994412-61994431 None:intergenic 65.0%
TGGCTGTGGCCGCAACATCC+AGG + chr7_2:61994972-61994991 None:intergenic 65.0%
GGATGTTGCGGCCACAGCCA+CGG - chr7_2:61994972-61994991 Msa1067430:intron 65.0%
TGGTCTGCAGACCGTGGCTG+TGG + chr7_2:61994986-61995005 None:intergenic 65.0%
TAGGCCCCTGTAGGCCGGTC+TGG + chr7_2:61993882-61993901 None:intergenic 70.0%
GACCGGCCTACAGGGGCCTA+CGG - chr7_2:61993882-61993901 Msa1067430:intron 70.0%
GCTAGGCCGTAGGCCCCTGT+AGG + chr7_2:61993891-61993910 None:intergenic 70.0%
GGCCTAGCCTACGACAGGCC+AGG - chr7_2:61993903-61993922 Msa1067430:intron 70.0%
GGCCTGGCCTGTCGTAGGCT+AGG + chr7_2:61993908-61993927 None:intergenic 70.0%
AGCCTACGACAGGCCAGGCC+AGG - chr7_2:61993908-61993927 Msa1067430:intron 70.0%
AGCCTGGCCTGGCCTGTCGT+AGG + chr7_2:61993913-61993932 None:intergenic 70.0%
CCTGGCCTGCGGCCTGTCAT+AGG + chr7_2:61994401-61994420 None:intergenic 70.0%
CCTATGACAGGCCGCAGGCC+AGG - chr7_2:61994398-61994417 Msa1067430:CDS 70.0%
ACAGGCCGCAGGCCAGGCTT+AGG - chr7_2:61994404-61994423 Msa1067430:CDS 70.0%
GGCCGTAGGCCCCTGTAGGC+CGG + chr7_2:61993887-61993906 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 61992199 61995717 61992199 ID=Msa1067430;Name=Msa1067430
chr7_2 mRNA 61992199 61995717 61992199 ID=Msa1067430-mRNA-1;Parent=Msa1067430;Name=Msa1067430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=94|1|1|1|1|1|3|263|268
chr7_2 exon 61992199 61992809 61992199 ID=Msa1067430-mRNA-1:exon:12561;Parent=Msa1067430-mRNA-1
chr7_2 exon 61994296 61994496 61994296 ID=Msa1067430-mRNA-1:exon:12560;Parent=Msa1067430-mRNA-1
chr7_2 exon 61995366 61995717 61995366 ID=Msa1067430-mRNA-1:exon:12559;Parent=Msa1067430-mRNA-1
chr7_2 five_prime_UTR 61995624 61995717 61995624 ID=Msa1067430-mRNA-1:five_prime_utr;Parent=Msa1067430-mRNA-1
chr7_2 CDS 61995366 61995623 61995366 ID=Msa1067430-mRNA-1:cds;Parent=Msa1067430-mRNA-1
chr7_2 CDS 61994296 61994496 61994296 ID=Msa1067430-mRNA-1:cds;Parent=Msa1067430-mRNA-1
chr7_2 CDS 61992462 61992809 61992462 ID=Msa1067430-mRNA-1:cds;Parent=Msa1067430-mRNA-1
chr7_2 three_prime_UTR 61992199 61992461 61992199 ID=Msa1067430-mRNA-1:three_prime_utr;Parent=Msa1067430-mRNA-1
Gene Sequence

>Msa1067430

ATGGCTACAACCCCTTCTCTTCTACACTCTTCTGCTTCTTCCTTTCTCTCTCAATTTCGAGCTTTTCCAACCCAATTCTCTTCTTCTTCGTTGTTCTCTCATGGAAACAACAGACTGGTTTCTGTGAAAGCTGATGCTTCTGGTGCTGTATTGGTGGAGAAATCTGAAGCAGAGAAGGTTTATAGACTCAAAACAACTTACAATGAAAAAATTGTTCCTTTGCTTATGGAAGAATTCTCCTACACCAATATTCATCAGGTGCCTAAAGTTAAGAAGATTGTGGTAAACTGTGGTATTGGAGAAGCTGCACAAAATGCAAAAGGTTTGGATGCAGCAATACTTGATCTAGCACTGATCACTGGGCAGAGACCTGTTAAGACTCGGGCGAGGAATTCCGTTGCCACCTTCAAGATCAGGGAAGGTCAACCACTTGGGATTGCTGTGACACTCAGAGGAAAAATAATGTACTCATTCCTAGACCGCGTTATCAACTTAGGACTTCCTAGGACAAGAGATTTTCAAGGTTTGAATATCAGCAGCTTTGATGGGAATGGGAATTACAACATTGGTATTAAGGACCAAACTGTGTTCCCAGAGCTGAAATCTGGTATAGGTACACCTAGAGGAATGGATATCTGCATCTCAACAACCGCTAGAACTGATCAAGAAGGACAAAAATTATTGGCTCTCATGGGTATGCCCTTCAGAGAGGGAGTTGAAGTTACCCAAGTAGTTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGATCCAAAATCAAAGGGTAGAGGAGACAGAGCAAAGAAGTAA

Protein sequence

>Msa1067430

MATTPSLLHSSASSFLSQFRAFPTQFSSSSLFSHGNNRLVSVKADASGAVLVEKSEAEKVYRLKTTYNEKIVPLLMEEFSYTNIHQVPKVKKIVVNCGIGEAAQNAKGLDAAILDLALITGQRPVKTRARNSVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGLNISSFDGNGNYNIGIKDQTVFPELKSGIGTPRGMDICISTTARTDQEGQKLLALMGMPFREGVEVTQVVRKKKLKSHHFDPKSKGRGDRAKK*