AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0247310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0247310 MtrunA17_Chr2g0302051 92.262 168 7 2 1 164 1 166 6.61e-102 289
Msa0247310 MtrunA17_Chr5g0417481 35.256 156 91 5 14 162 11 163 9.57e-23 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0247310 AT1G48350.1 80.315 127 25 0 38 164 44 170 2.11e-72 215
Msa0247310 AT1G14205.1 40.476 126 71 2 38 162 45 167 9.87e-22 86.7
Msa0247310 AT3G17626.1 71.053 38 11 0 111 148 10 47 1.32e-12 59.7

Find 59 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGAGTTCTTGCATATTA+TGG 0.122595 2_2:+29346033 Msa0247310:three_prime_UTR
GCAAAGTCCTGTCTGGAAAT+AGG 0.226499 2_2:+29345744 Msa0247310:CDS
TAAAGAGGAAGAAGAAGAAT+TGG 0.240845 2_2:-29342731 None:intergenic
CACAGACAATCTTGGTCTTT+CGG 0.279312 2_2:-29344694 None:intergenic
ACAGACAATCTTGGTCTTTC+GGG 0.288767 2_2:-29344693 None:intergenic
CAAGAGTTCTTGCATATTAT+GGG 0.294954 2_2:+29346034 Msa0247310:three_prime_UTR
TATGCAAGAACTCTTGTAAA+AGG 0.296836 2_2:-29346027 None:intergenic
CAAAGTCCTGTCTGGAAATA+GGG 0.345222 2_2:+29345745 Msa0247310:CDS
AACAACTAAACACTAGGAAA+TGG 0.404215 2_2:-29346000 None:intergenic
TTGGACAAAGAGATGCTTGT+TGG 0.418067 2_2:-29344724 None:intergenic
TTGTTTATTGTTTAAATCCT+CGG 0.420140 2_2:-29345903 None:intergenic
GCTTTAACACGGCCATGGTA+TGG 0.425794 2_2:-29345801 None:intergenic
AAAGAGGAAGAAGAAGAATT+GGG 0.458913 2_2:-29342730 None:intergenic
TGGGGTGCTTAAAACGCAAA+TGG 0.466124 2_2:+29346053 Msa0247310:three_prime_UTR
AATCATTGCAAAGTCCTGTC+TGG 0.470319 2_2:+29345737 Msa0247310:CDS
TATCAGGAACTTACAATTGT+AGG 0.470527 2_2:-29344834 None:intergenic
GTCGACTGATAGATAGTAGA+AGG 0.473102 2_2:+29342547 Msa0247310:five_prime_UTR
GAAGAAGAAGAATTGGGATT+CGG 0.485519 2_2:-29342724 None:intergenic
GCTGATGCGGCTCGCGAACA+TGG 0.492801 2_2:+29345828 Msa0247310:CDS
TTCAACAACAAAAGATAAAG+AGG 0.493457 2_2:-29342746 None:intergenic
GATCGAAACACAGACAATCT+TGG 0.494991 2_2:-29344702 None:intergenic
TGTGATCCCTATTTCCAGAC+AGG 0.504080 2_2:-29345751 None:intergenic
CCTTCTTTCTGATACGAACA+TGG 0.507027 2_2:-29342807 None:intergenic
CTTTAACACGGCCATGGTAT+GGG 0.511001 2_2:-29345800 None:intergenic
TCTGTCTTCCCTTCGAGTAG+TGG 0.511964 2_2:-29342776 None:intergenic
GAAGAGTTGAACTTCACCTC+TGG 0.512553 2_2:+29344810 Msa0247310:CDS
GAAGAATTGGGATTCGGCGT+TGG 0.514605 2_2:-29342718 None:intergenic
AACAGTGAAGAGGAAGAAGA+GGG 0.524850 2_2:-29342688 None:intergenic
AGGGAAATGTGCAAGAATGA+AGG 0.531211 2_2:-29342669 None:intergenic
AGATAGATAGACAGAGAAAA+CGG 0.541300 2_2:+29342593 Msa0247310:five_prime_UTR
ATAGACAGAGAAAACGGTAC+TGG 0.544424 2_2:+29342599 Msa0247310:five_prime_UTR
CCATGTTCGTATCAGAAAGA+AGG 0.545328 2_2:+29342807 Msa0247310:CDS
TGTTAAAGCTATTGCTGATG+CGG 0.547812 2_2:+29345815 Msa0247310:CDS
TCTTGGTGTCGTCAATCACT+TGG 0.549933 2_2:-29344743 None:intergenic
TGATAGATAGTAGAAGGATA+AGG 0.552943 2_2:+29342553 Msa0247310:five_prime_UTR
GAACAGTGAAGAGGAAGAAG+AGG 0.557582 2_2:-29342689 None:intergenic
TGGATATATAAATATTAACT+AGG 0.561729 2_2:-29345980 None:intergenic
GCAAGAACTCTTGTAAAAGG+TGG 0.562995 2_2:-29346024 None:intergenic
ACAAAGGTAGCCTTTGACAG+AGG 0.569891 2_2:+29345771 Msa0247310:CDS
TGGGTAACCACCTCTGTCAA+AGG 0.571658 2_2:-29345781 None:intergenic
TGAAGCAAGTGTATGCATCT+TGG 0.577835 2_2:-29344760 None:intergenic
GCTTCAGGAAGTAGCAAAGA+GGG 0.581508 2_2:+29345707 Msa0247310:intron
TTCAGCTTCAACAATGCAGA+AGG 0.583407 2_2:+29344779 Msa0247310:CDS
ATGTTTAAATTTGTAAGCCG+AGG 0.587892 2_2:+29345886 Msa0247310:three_prime_UTR
AAGAGTTCTTGCATATTATG+GGG 0.590787 2_2:+29346035 Msa0247310:three_prime_UTR
AAGCAAAAGCCACTACTCGA+AGG 0.593488 2_2:+29342767 Msa0247310:CDS
CAGAGAAAACGGTACTGGAG+TGG 0.596464 2_2:+29342604 Msa0247310:five_prime_UTR
GGTGGAAACAACTAAACACT+AGG 0.608834 2_2:-29346006 None:intergenic
AAGGTAGCCTTTGACAGAGG+TGG 0.614954 2_2:+29345774 Msa0247310:CDS
AGCAAAAGCCACTACTCGAA+GGG 0.620843 2_2:+29342768 Msa0247310:CDS
CAATAGCTTTAACACGGCCA+TGG 0.626600 2_2:-29345806 None:intergenic
CATCAGCAATAGCTTTAACA+CGG 0.627319 2_2:-29345812 None:intergenic
TGGAACTGTGAACAGTGAAG+AGG 0.651425 2_2:-29342698 None:intergenic
TGCTTCAGGAAGTAGCAAAG+AGG 0.655766 2_2:+29345706 Msa0247310:intron
TCAGGAAGTAGCAAAGAGGG+TGG 0.657714 2_2:+29345710 Msa0247310:intron
CAGGAAGTAGCAAAGAGGGT+GGG 0.658309 2_2:+29345711 Msa0247310:intron
ACTTACAATTGTAGGACCAG+AGG 0.688517 2_2:-29344826 None:intergenic
AGAGGTGGTTACCCATACCA+TGG 0.695112 2_2:+29345789 Msa0247310:CDS
TCTGGAAATAGGGATCACAA+AGG 0.730190 2_2:+29345755 Msa0247310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTGTTATTGTTTTTAT+TGG + chr2_2:29343233-29343252 Msa0247310:intron 10.0%
!!! TGGTTTTTTTATTTAATAAT+TGG - chr2_2:29343539-29343558 None:intergenic 10.0%
!! CAATTAAATTATTATCAATT+TGG - chr2_2:29343739-29343758 None:intergenic 10.0%
!!! ATTGATAATAATTTAATTGA+AGG + chr2_2:29343740-29343759 Msa0247310:intron 10.0%
!!! TTGATAATAATTTAATTGAA+GGG + chr2_2:29343741-29343760 Msa0247310:intron 10.0%
!! AATATATTAGTTATTACAAT+TGG - chr2_2:29345292-29345311 None:intergenic 10.0%
!!! TTAGTAGTTACTTTAATATT+TGG + chr2_2:29343008-29343027 Msa0247310:intron 15.0%
!!! TAGTAGTTACTTTAATATTT+GGG + chr2_2:29343009-29343028 Msa0247310:intron 15.0%
!! AAATATAGATGTATATTTAC+AGG - chr2_2:29343916-29343935 None:intergenic 15.0%
!!! AAATCATTTTATGATTTTTC+AGG + chr2_2:29344659-29344678 Msa0247310:intron 15.0%
!!! AAGACTTTTAATAAGTATTA+AGG - chr2_2:29344972-29344991 None:intergenic 15.0%
!! TGGATATATAAATATTAACT+AGG - chr2_2:29345983-29346002 None:intergenic 15.0%
!!! TGCACAATTAAATACTATTT+TGG - chr2_2:29343134-29343153 None:intergenic 20.0%
!! ACAAAGGAGTAAATATTAAT+GGG - chr2_2:29343393-29343412 None:intergenic 20.0%
!! AACAAAGGAGTAAATATTAA+TGG - chr2_2:29343394-29343413 None:intergenic 20.0%
!! GTACAATAACAAAAGAATAA+TGG + chr2_2:29343496-29343515 Msa0247310:intron 20.0%
!! TAAAAAAACCATTACTTGAT+TGG + chr2_2:29343548-29343567 Msa0247310:intron 20.0%
!! AAAAAAACCATTACTTGATT+GGG + chr2_2:29343549-29343568 Msa0247310:intron 20.0%
!! ATTTAATTGAAGGGTAAAAT+TGG + chr2_2:29343750-29343769 Msa0247310:intron 20.0%
!! AAGCAACAATATACAATAAT+AGG - chr2_2:29343852-29343871 None:intergenic 20.0%
!!! CTTTTGTTAATTCTGTTATT+TGG + chr2_2:29343869-29343888 Msa0247310:intron 20.0%
!!! CTTGATAATGATAAAAGATA+CGG + chr2_2:29344137-29344156 Msa0247310:intron 20.0%
!!! TTGATAATGATAAAAGATAC+GGG + chr2_2:29344138-29344157 Msa0247310:intron 20.0%
!!! TGTAAATTTGTAAGTTTTTG+TGG + chr2_2:29344372-29344391 Msa0247310:intron 20.0%
!! GAAATAAAAGAAAGTAACAA+AGG + chr2_2:29344435-29344454 Msa0247310:intron 20.0%
!!! TTTAGCTTACTTTAAGTTTT+AGG + chr2_2:29344476-29344495 Msa0247310:intron 20.0%
!! TATAAGAGAAAACTTATATC+AGG - chr2_2:29344517-29344536 None:intergenic 20.0%
!! TCTTATATATAAAGAGATCA+TGG + chr2_2:29344530-29344549 Msa0247310:intron 20.0%
!!! TGAAATGATGTTTGTTAAAT+TGG + chr2_2:29344595-29344614 Msa0247310:intron 20.0%
!! TTATAATAAGAGAAACGTAA+CGG - chr2_2:29344862-29344881 None:intergenic 20.0%
!!! AGGAATTTTTATTATCATCA+GGG - chr2_2:29344944-29344963 None:intergenic 20.0%
!! TAATAAGTATTAAGGAAAAC+AGG - chr2_2:29344964-29344983 None:intergenic 20.0%
!!! TTTAGTTTTATGCATTGTTA+TGG - chr2_2:29345002-29345021 None:intergenic 20.0%
!!! ATATATCTTTCTTTGAAATC+TGG - chr2_2:29345057-29345076 None:intergenic 20.0%
!!! TATCCAAGAATAAACTTTTT+GGG - chr2_2:29345151-29345170 None:intergenic 20.0%
!!! TTATCCAAGAATAAACTTTT+TGG - chr2_2:29345152-29345171 None:intergenic 20.0%
!!! AATTTTCGTTTACTAAATGA+CGG + chr2_2:29345661-29345680 Msa0247310:intron 20.0%
!! TTGTTTATTGTTTAAATCCT+CGG - chr2_2:29345906-29345925 None:intergenic 20.0%
! TTCAACAACAAAAGATAAAG+AGG - chr2_2:29342749-29342768 None:intergenic 25.0%
! GAGTACTTGTTTGTAAATTA+TGG + chr2_2:29342918-29342937 Msa0247310:intron 25.0%
!!! TTATGGTTTGTATTTGTTGT+TGG + chr2_2:29342935-29342954 Msa0247310:intron 25.0%
!!! TGTTTTTATTGGTCTGATTT+TGG + chr2_2:29343244-29343263 Msa0247310:intron 25.0%
! TAATATTTACTCCTTTGTTC+AGG + chr2_2:29343395-29343414 Msa0247310:intron 25.0%
! TACTTGATTGTGTATTCATT+GGG - chr2_2:29343479-29343498 None:intergenic 25.0%
! AAAATACACAATGCTTTGAT+TGG + chr2_2:29343655-29343674 Msa0247310:intron 25.0%
! AAATGATTAAAATCACGAGA+AGG - chr2_2:29343715-29343734 None:intergenic 25.0%
! AAAATTACTATCCAAACACT+TGG + chr2_2:29343778-29343797 Msa0247310:intron 25.0%
! TTATGTGTTAGTTAGAACAT+TGG + chr2_2:29343808-29343827 Msa0247310:intron 25.0%
! CACATTTAATCTACTAAAAG+TGG - chr2_2:29343943-29343962 None:intergenic 25.0%
!! TCAATACTAAAGCTTCTTTT+TGG + chr2_2:29344071-29344090 Msa0247310:intron 25.0%
!! ATTTTGTTGCATTGTCATAA+TGG + chr2_2:29344235-29344254 Msa0247310:intron 25.0%
! GGATTATAAAGCACATTATT+AGG - chr2_2:29344261-29344280 None:intergenic 25.0%
! ATTGAGAGAAAGTTCATAAA+AGG + chr2_2:29344289-29344308 Msa0247310:intron 25.0%
! AAAGTAACAAAGGAAGATAA+AGG + chr2_2:29344445-29344464 Msa0247310:intron 25.0%
!!! TTTATGATTTTTCAGGTTGA+AGG + chr2_2:29344666-29344685 Msa0247310:intron 25.0%
! TTTATTATCATCAGGGAATA+GGG - chr2_2:29344937-29344956 None:intergenic 25.0%
!! TTTTATTATCATCAGGGAAT+AGG - chr2_2:29344938-29344957 None:intergenic 25.0%
!! CAGGAATTTTTATTATCATC+AGG - chr2_2:29344945-29344964 None:intergenic 25.0%
!!! GAATAAACTTTTTGGGTAAT+AGG - chr2_2:29345144-29345163 None:intergenic 25.0%
! TTACCCAAAAAGTTTATTCT+TGG + chr2_2:29345145-29345164 Msa0247310:intron 25.0%
! TGACACTAGAAATTAAATCA+TGG + chr2_2:29345184-29345203 Msa0247310:intron 25.0%
! TAGAAATTAAATCATGGAGA+AGG + chr2_2:29345190-29345209 Msa0247310:intron 25.0%
! TTCTGTAAGTAATATACTCA+AGG - chr2_2:29345231-29345250 None:intergenic 25.0%
! TTAGTTATTACAATTGGAAG+TGG - chr2_2:29345286-29345305 None:intergenic 25.0%
!! TTTCATTTTCATTGATCACA+AGG + chr2_2:29345321-29345340 Msa0247310:intron 25.0%
!! TTCATTTTCATTGATCACAA+GGG + chr2_2:29345322-29345341 Msa0247310:intron 25.0%
! ATATGTTCAGTAGCTATTAT+GGG - chr2_2:29345350-29345369 None:intergenic 25.0%
!! AAAAATGTCACTTGAAAATG+AGG - chr2_2:29345946-29345965 None:intergenic 25.0%
TGATAGATAGTAGAAGGATA+AGG + chr2_2:29342553-29342572 Msa0247310:five_prime_UTR 30.0%
AGATAGATAGACAGAGAAAA+CGG + chr2_2:29342593-29342612 Msa0247310:five_prime_UTR 30.0%
AAAGAGGAAGAAGAAGAATT+GGG - chr2_2:29342733-29342752 None:intergenic 30.0%
TAAAGAGGAAGAAGAAGAAT+TGG - chr2_2:29342734-29342753 None:intergenic 30.0%
AACATAGTTCCAACATGTTA+GGG + chr2_2:29343208-29343227 Msa0247310:intron 30.0%
CAATAAAAACCCTAACATGT+TGG - chr2_2:29343220-29343239 None:intergenic 30.0%
!!! CTGATTTTGGAGCATTTTAA+TGG + chr2_2:29343257-29343276 Msa0247310:intron 30.0%
! CACACAGTTAAGGATTATTT+TGG + chr2_2:29343301-29343320 Msa0247310:intron 30.0%
GTACTTGATTGTGTATTCAT+TGG - chr2_2:29343480-29343499 None:intergenic 30.0%
TTCTTTACCCAATCAAGTAA+TGG - chr2_2:29343559-29343578 None:intergenic 30.0%
! ATAAGAGTATACCAAGTGTT+TGG - chr2_2:29343792-29343811 None:intergenic 30.0%
TAGATTAAATGTGCGTTTGA+GGG + chr2_2:29343950-29343969 Msa0247310:intron 30.0%
TTACTGATATCATGTTTGAC+AGG + chr2_2:29344164-29344183 Msa0247310:intron 30.0%
ACTTTCTCTCAATGAAATTG+AGG - chr2_2:29344282-29344301 None:intergenic 30.0%
TACTTGATTCATTGAGAATG+AGG + chr2_2:29344329-29344348 Msa0247310:intron 30.0%
!!! GCTTACTTTAAGTTTTAGGA+TGG + chr2_2:29344480-29344499 Msa0247310:intron 30.0%
GATATGATGAATTATGCAGT+AGG + chr2_2:29344624-29344643 Msa0247310:intron 30.0%
TATCAGGAACTTACAATTGT+AGG - chr2_2:29344837-29344856 None:intergenic 30.0%
! TAATTTAACTTCTGCCAGAT+TGG + chr2_2:29344879-29344898 Msa0247310:intron 30.0%
TTATTATCATCAGGGAATAG+GGG - chr2_2:29344936-29344955 None:intergenic 30.0%
TGCATAAAACTAAACACTGA+TGG + chr2_2:29345008-29345027 Msa0247310:intron 30.0%
AAATTAAATCATGGAGAAGG+AGG + chr2_2:29345193-29345212 Msa0247310:intron 30.0%
TATGTTCAGTAGCTATTATG+GGG - chr2_2:29345349-29345368 None:intergenic 30.0%
CATATGTTCAGTAGCTATTA+TGG - chr2_2:29345351-29345370 None:intergenic 30.0%
TAATAGCTACTGAACATATG+AGG + chr2_2:29345351-29345370 Msa0247310:intron 30.0%
ATTTGCTTGGTTGAACTTAT+TGG - chr2_2:29345456-29345475 None:intergenic 30.0%
AATAAGTTCAACCAAGCAAA+TGG + chr2_2:29345455-29345474 Msa0247310:intron 30.0%
! TTTTAAGCAAGGAAGATTGA+GGG - chr2_2:29345614-29345633 None:intergenic 30.0%
! ATACAACAAGCTTTTAAGCA+AGG - chr2_2:29345625-29345644 None:intergenic 30.0%
ATGTTTAAATTTGTAAGCCG+AGG + chr2_2:29345886-29345905 Msa0247310:three_prime_UTR 30.0%
AACAACTAAACACTAGGAAA+TGG - chr2_2:29346003-29346022 None:intergenic 30.0%
TATGCAAGAACTCTTGTAAA+AGG - chr2_2:29346030-29346049 None:intergenic 30.0%
ACAAGAGTTCTTGCATATTA+TGG + chr2_2:29346033-29346052 Msa0247310:three_prime_UTR 30.0%
CAAGAGTTCTTGCATATTAT+GGG + chr2_2:29346034-29346053 Msa0247310:three_prime_UTR 30.0%
AAGAGTTCTTGCATATTATG+GGG + chr2_2:29346035-29346054 Msa0247310:three_prime_UTR 30.0%
GAAGAAGAAGAATTGGGATT+CGG - chr2_2:29342727-29342746 None:intergenic 35.0%
AAATTCGCAAATTCAAGTGG+TGG - chr2_2:29342898-29342917 None:intergenic 35.0%
CTCAAATTCGCAAATTCAAG+TGG - chr2_2:29342901-29342920 None:intergenic 35.0%
CAACATAGTTCCAACATGTT+AGG + chr2_2:29343207-29343226 Msa0247310:intron 35.0%
! TTTGGAATTTCGCTACATTG+AGG + chr2_2:29343319-29343338 Msa0247310:intron 35.0%
TTGGAATTTCGCTACATTGA+GGG + chr2_2:29343320-29343339 Msa0247310:intron 35.0%
! TCTAGTTCAAACCTGAACAA+AGG - chr2_2:29343409-29343428 None:intergenic 35.0%
ATTGATTGCGTTAAGGGTTA+AGG - chr2_2:29343442-29343461 None:intergenic 35.0%
AGCTCAATTGATTGCGTTAA+GGG - chr2_2:29343448-29343467 None:intergenic 35.0%
TAGCTCAATTGATTGCGTTA+AGG - chr2_2:29343449-29343468 None:intergenic 35.0%
TTGTGTATTCATTGGGAGTT+GGG - chr2_2:29343472-29343491 None:intergenic 35.0%
ATTGTGTATTCATTGGGAGT+TGG - chr2_2:29343473-29343492 None:intergenic 35.0%
!! AGCATTGTGTATTTTTGCGA+AGG - chr2_2:29343614-29343633 None:intergenic 35.0%
! GGAGAGTACAAAACTAATCA+AGG - chr2_2:29343895-29343914 None:intergenic 35.0%
GTAGATTAAATGTGCGTTTG+AGG + chr2_2:29343949-29343968 Msa0247310:intron 35.0%
TTCCAAAAGCAACTCTCTTA+TGG + chr2_2:29344023-29344042 Msa0247310:intron 35.0%
!! TTCCATAAGAGAGTTGCTTT+TGG - chr2_2:29344028-29344047 None:intergenic 35.0%
! TCATGTTTGACAGGACATTT+TGG + chr2_2:29344173-29344192 Msa0247310:intron 35.0%
!!! ACATTTTGGTTTTGCTTCTC+TGG + chr2_2:29344187-29344206 Msa0247310:intron 35.0%
ATGAAGTAGTAGTAACATGC+AGG - chr2_2:29345082-29345101 None:intergenic 35.0%
AATATACTCAAGGAACCCAA+GGG - chr2_2:29345221-29345240 None:intergenic 35.0%
TAATATACTCAAGGAACCCA+AGG - chr2_2:29345222-29345241 None:intergenic 35.0%
AAAGAACTTCAGGATGCAAA+GGG - chr2_2:29345262-29345281 None:intergenic 35.0%
AAAAGAACTTCAGGATGCAA+AGG - chr2_2:29345263-29345282 None:intergenic 35.0%
!!! ATTCCAGGGGAGTTTTTTTA+AGG - chr2_2:29345430-29345449 None:intergenic 35.0%
AACTTATTGGTAGATTCCAG+GGG - chr2_2:29345443-29345462 None:intergenic 35.0%
GAACTTATTGGTAGATTCCA+GGG - chr2_2:29345444-29345463 None:intergenic 35.0%
TGAACTTATTGGTAGATTCC+AGG - chr2_2:29345445-29345464 None:intergenic 35.0%
!! GTTTTTGAAGACCATTTGCT+TGG - chr2_2:29345469-29345488 None:intergenic 35.0%
! CTTTTAAGCAAGGAAGATTG+AGG - chr2_2:29345615-29345634 None:intergenic 35.0%
CAATACAGTTTGAAAGGATC+AGG - chr2_2:29345688-29345707 None:intergenic 35.0%
CTGAAGCAATACAGTTTGAA+AGG - chr2_2:29345694-29345713 None:intergenic 35.0%
CTTTCAAACTGTATTGCTTC+AGG + chr2_2:29345692-29345711 Msa0247310:intron 35.0%
!! CATCAGCAATAGCTTTAACA+CGG - chr2_2:29345815-29345834 None:intergenic 35.0%
TGTTAAAGCTATTGCTGATG+CGG + chr2_2:29345815-29345834 Msa0247310:CDS 35.0%
!!! AATGCTGATTTTAGAACTCG+AGG - chr2_2:29345854-29345873 None:intergenic 35.0%
GTCGACTGATAGATAGTAGA+AGG + chr2_2:29342547-29342566 Msa0247310:five_prime_UTR 40.0%
ATAGACAGAGAAAACGGTAC+TGG + chr2_2:29342599-29342618 Msa0247310:five_prime_UTR 40.0%
AGGGAAATGTGCAAGAATGA+AGG - chr2_2:29342672-29342691 None:intergenic 40.0%
AACAGTGAAGAGGAAGAAGA+GGG - chr2_2:29342691-29342710 None:intergenic 40.0%
CCTTCTTTCTGATACGAACA+TGG - chr2_2:29342810-29342829 None:intergenic 40.0%
CCATGTTCGTATCAGAAAGA+AGG + chr2_2:29342807-29342826 Msa0247310:CDS 40.0%
GCTAATCATGCTACATTGAG+GGG - chr2_2:29343082-29343101 None:intergenic 40.0%
GGCTAATCATGCTACATTGA+GGG - chr2_2:29343083-29343102 None:intergenic 40.0%
TGGCTAATCATGCTACATTG+AGG - chr2_2:29343084-29343103 None:intergenic 40.0%
CTACATTGAAGGGACTATTG+TGG - chr2_2:29343104-29343123 None:intergenic 40.0%
TGGAAGTTCGCTACATTGAA+GGG - chr2_2:29343114-29343133 None:intergenic 40.0%
TTGGAAGTTCGCTACATTGA+AGG - chr2_2:29343115-29343134 None:intergenic 40.0%
AGTAACGAAGCACACAGTTA+AGG + chr2_2:29343291-29343310 Msa0247310:intron 40.0%
! GTTAAGGGTTAAGGTGTTAC+AGG - chr2_2:29343433-29343452 None:intergenic 40.0%
TACTCTCGAAGCAAGATTTG+AGG + chr2_2:29344100-29344119 Msa0247310:intron 40.0%
ACAAAGGAAGATAAAGGAGC+AGG + chr2_2:29344451-29344470 Msa0247310:intron 40.0%
! ACAGACAATCTTGGTCTTTC+GGG - chr2_2:29344696-29344715 None:intergenic 40.0%
! CACAGACAATCTTGGTCTTT+CGG - chr2_2:29344697-29344716 None:intergenic 40.0%
GATCGAAACACAGACAATCT+TGG - chr2_2:29344705-29344724 None:intergenic 40.0%
TTGGACAAAGAGATGCTTGT+TGG - chr2_2:29344727-29344746 None:intergenic 40.0%
TGAAGCAAGTGTATGCATCT+TGG - chr2_2:29344763-29344782 None:intergenic 40.0%
TTCAGCTTCAACAATGCAGA+AGG + chr2_2:29344779-29344798 Msa0247310:CDS 40.0%
ACTTACAATTGTAGGACCAG+AGG - chr2_2:29344829-29344848 None:intergenic 40.0%
ACACAACATTGAGTCCAATC+TGG - chr2_2:29344896-29344915 None:intergenic 40.0%
TGGAAGTGGAAAAGAACTTC+AGG - chr2_2:29345272-29345291 None:intergenic 40.0%
TGCTGTAGAAATCCACGATA+TGG - chr2_2:29345402-29345421 None:intergenic 40.0%
ATATCGTGGATTTCTACAGC+AGG + chr2_2:29345401-29345420 Msa0247310:intron 40.0%
TATCGTGGATTTCTACAGCA+GGG + chr2_2:29345402-29345421 Msa0247310:intron 40.0%
GTTCCTTAAAAAAACTCCCC+TGG + chr2_2:29345424-29345443 Msa0247310:intron 40.0%
AATCATTGCAAAGTCCTGTC+TGG + chr2_2:29345737-29345756 Msa0247310:CDS 40.0%
CAAAGTCCTGTCTGGAAATA+GGG + chr2_2:29345745-29345764 Msa0247310:CDS 40.0%
TCTGGAAATAGGGATCACAA+AGG + chr2_2:29345755-29345774 Msa0247310:CDS 40.0%
GGTGGAAACAACTAAACACT+AGG - chr2_2:29346009-29346028 None:intergenic 40.0%
GCAAGAACTCTTGTAAAAGG+TGG - chr2_2:29346027-29346046 None:intergenic 40.0%
GAACAGTGAAGAGGAAGAAG+AGG - chr2_2:29342692-29342711 None:intergenic 45.0%
TGGAACTGTGAACAGTGAAG+AGG - chr2_2:29342701-29342720 None:intergenic 45.0%
AAGCAAAAGCCACTACTCGA+AGG + chr2_2:29342767-29342786 Msa0247310:CDS 45.0%
AGCAAAAGCCACTACTCGAA+GGG + chr2_2:29342768-29342787 Msa0247310:CDS 45.0%
CTACATTGAGGGGACTATTG+TGG - chr2_2:29343072-29343091 None:intergenic 45.0%
GCTACATTGAGGGACTATTG+TGG + chr2_2:29343330-29343349 Msa0247310:intron 45.0%
!! TCTTGGTGTCGTCAATCACT+TGG - chr2_2:29344746-29344765 None:intergenic 45.0%
GAAGAGTTGAACTTCACCTC+TGG + chr2_2:29344810-29344829 Msa0247310:CDS 45.0%
TGATGGCAGATATGATCACG+AGG + chr2_2:29345025-29345044 Msa0247310:intron 45.0%
GATGGCAGATATGATCACGA+GGG + chr2_2:29345026-29345045 Msa0247310:intron 45.0%
TGCTTCAGGAAGTAGCAAAG+AGG + chr2_2:29345706-29345725 Msa0247310:intron 45.0%
GCTTCAGGAAGTAGCAAAGA+GGG + chr2_2:29345707-29345726 Msa0247310:intron 45.0%
GCAAAGTCCTGTCTGGAAAT+AGG + chr2_2:29345744-29345763 Msa0247310:CDS 45.0%
TGTGATCCCTATTTCCAGAC+AGG - chr2_2:29345754-29345773 None:intergenic 45.0%
ACAAAGGTAGCCTTTGACAG+AGG + chr2_2:29345771-29345790 Msa0247310:CDS 45.0%
CTTTAACACGGCCATGGTAT+GGG - chr2_2:29345803-29345822 None:intergenic 45.0%
!! CAATAGCTTTAACACGGCCA+TGG - chr2_2:29345809-29345828 None:intergenic 45.0%
! TGGGGTGCTTAAAACGCAAA+TGG + chr2_2:29346053-29346072 Msa0247310:three_prime_UTR 45.0%
!! AATTAAATTATTATCAATTT+GGG - chr2_2:29343738-29343757 None:intergenic 5.0%
! CAGAGAAAACGGTACTGGAG+TGG + chr2_2:29342604-29342623 Msa0247310:five_prime_UTR 50.0%
GAAGAATTGGGATTCGGCGT+TGG - chr2_2:29342721-29342740 None:intergenic 50.0%
TCTGTCTTCCCTTCGAGTAG+TGG - chr2_2:29342779-29342798 None:intergenic 50.0%
GAGAAACGTAACGGCGTATC+AGG - chr2_2:29344853-29344872 None:intergenic 50.0%
ATGGAGAAGGAGGAACCCTT+GGG + chr2_2:29345203-29345222 Msa0247310:intron 50.0%
!! GCATTGACTCGAAAGCACAG+TGG + chr2_2:29345373-29345392 Msa0247310:intron 50.0%
TCAGGAAGTAGCAAAGAGGG+TGG + chr2_2:29345710-29345729 Msa0247310:intron 50.0%
CAGGAAGTAGCAAAGAGGGT+GGG + chr2_2:29345711-29345730 Msa0247310:intron 50.0%
AAGGTAGCCTTTGACAGAGG+TGG + chr2_2:29345774-29345793 Msa0247310:CDS 50.0%
TGGGTAACCACCTCTGTCAA+AGG - chr2_2:29345784-29345803 None:intergenic 50.0%
AGAGGTGGTTACCCATACCA+TGG + chr2_2:29345789-29345808 Msa0247310:CDS 50.0%
GCTTTAACACGGCCATGGTA+TGG - chr2_2:29345804-29345823 None:intergenic 50.0%
CATGGAGAAGGAGGAACCCT+TGG + chr2_2:29345202-29345221 Msa0247310:intron 55.0%
GCACAGTGGCTACCATATCG+TGG + chr2_2:29345387-29345406 Msa0247310:intron 55.0%
GCTGATGCGGCTCGCGAACA+TGG + chr2_2:29345828-29345847 Msa0247310:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 29342533 29346081 29342533 ID=Msa0247310;Name=Msa0247310
chr2_2 mRNA 29342533 29346081 29342533 ID=Msa0247310-mRNA-1;Parent=Msa0247310;Name=Msa0247310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=113|1|1|1|1|1|3|218|164
chr2_2 exon 29342533 29342828 29342533 ID=Msa0247310-mRNA-1:exon:10434;Parent=Msa0247310-mRNA-1
chr2_2 exon 29344681 29344842 29344681 ID=Msa0247310-mRNA-1:exon:10435;Parent=Msa0247310-mRNA-1
chr2_2 exon 29345714 29346081 29345714 ID=Msa0247310-mRNA-1:exon:10436;Parent=Msa0247310-mRNA-1
chr2_2 five_prime_UTR 29342533 29342645 29342533 ID=Msa0247310-mRNA-1:five_prime_utr;Parent=Msa0247310-mRNA-1
chr2_2 CDS 29342646 29342828 29342646 ID=Msa0247310-mRNA-1:cds;Parent=Msa0247310-mRNA-1
chr2_2 CDS 29344681 29344842 29344681 ID=Msa0247310-mRNA-1:cds;Parent=Msa0247310-mRNA-1
chr2_2 CDS 29345714 29345863 29345714 ID=Msa0247310-mRNA-1:cds;Parent=Msa0247310-mRNA-1
chr2_2 three_prime_UTR 29345864 29346081 29345864 ID=Msa0247310-mRNA-1:three_prime_utr;Parent=Msa0247310-mRNA-1
Gene Sequence

>Msa0247310

ATGTTAACTTCTTCGCTCTCATTCCTTCATTCTTGCACATTTCCCTCTTCTTCCTCTTCACTGTTCACAGTTCCAACGCCGAATCCCAATTCTTCTTCTTCCTCTTTATCTTTTGTTGTTGAAGCAAAAGCCACTACTCGAAGGGAAGACAGAACTGCTCGCCATGTTCGTATCAGAAAGAAGGTTGAAGGAACACCCGAAAGACCAAGATTGTCTGTGTTTCGATCCAACAAGCATCTCTTTGTCCAAGTGATTGACGACACCAAGATGCATACACTTGCTTCAGCTTCAACAATGCAGAAGGCAATTGCTGAAGAGTTGAACTTCACCTCTGGTCCTACAATTGAAGTAGCAAAGAGGGTGGGTGAAATCATTGCAAAGTCCTGTCTGGAAATAGGGATCACAAAGGTAGCCTTTGACAGAGGTGGTTACCCATACCATGGCCGTGTTAAAGCTATTGCTGATGCGGCTCGCGAACATGGCCTCGAGTTCTAA

Protein sequence

>Msa0247310

MLTSSLSFLHSCTFPSSSSSLFTVPTPNPNSSSSSLSFVVEAKATTRREDRTARHVRIRKKVEGTPERPRLSVFRSNKHLFVQVIDDTKMHTLASASTMQKAIAEELNFTSGPTIEVAKRVGEIIAKSCLEIGITKVAFDRGGYPYHGRVKAIADAAREHGLEF*