AlfalfaGEDB | Msa0247310

M. sativa cultivar zhongmu-4 / Msa0247310

KEGG: K02881
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363
PFAM: PF00861.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247310	XP_003595391.1	92.262	168	7	2	1	164	1	166	7.18e-98	289

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247310	sp\|P82195\|RK18_SPIOL	82.540	126	22	0	39	164	41	166	1.26e-76	228

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247310	A2Q3Y9	92.262	168	7	2	1	164	1	166	3.43e-98	289

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0247310	0.840632	7.735696e-58	-8.615850e-47
Msa0001460	Msa0247310	0.852571	4.229819e-61	-8.615850e-47
Msa0001540	Msa0247310	0.867411	1.396340e-65	-8.615850e-47
Msa0001950	Msa0247310	0.802660	5.049935e-49	-8.615850e-47
Msa0002060	Msa0247310	0.850944	1.223350e-60	-8.615850e-47
Msa0003470	Msa0247310	0.893808	4.450097e-75	-8.615850e-47
Msa0006580	Msa0247310	0.816779	4.637433e-52	-8.615850e-47
Msa0006870	Msa0247310	0.804694	1.910536e-49	-8.615850e-47
Msa0007160	Msa0247310	0.821421	4.074800e-53	-8.615850e-47
Msa0007450	Msa0247310	0.854331	1.322105e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247310	MtrunA17_Chr2g0302051	92.262	168	7	2	1	164	1	166	6.61e-102	289
Msa0247310	MtrunA17_Chr5g0417481	35.256	156	91	5	14	162	11	163	9.57e-23	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0247310	AT1G48350.1	80.315	127	25	0	38	164	44	170	2.11e-72	215
Msa0247310	AT1G14205.1	40.476	126	71	2	38	162	45	167	9.87e-22	86.7
Msa0247310	AT3G17626.1	71.053	38	11	0	111	148	10	47	1.32e-12	59.7

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Find 59 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGAAGAAGAAGAATT+GGG	0.458913	2_2:-29342730	None:intergenic
AACAACTAAACACTAGGAAA+TGG	0.404215	2_2:-29346000	None:intergenic
AACAGTGAAGAGGAAGAAGA+GGG	0.524850	2_2:-29342688	None:intergenic
AAGAGTTCTTGCATATTATG+GGG	0.590787	2_2:+29346035	Msa0247310:three_prime_UTR
AAGCAAAAGCCACTACTCGA+AGG	0.593488	2_2:+29342767	Msa0247310:CDS
AAGGTAGCCTTTGACAGAGG+TGG	0.614954	2_2:+29345774	Msa0247310:CDS
AATCATTGCAAAGTCCTGTC+TGG	0.470319	2_2:+29345737	Msa0247310:CDS
ACAAAGGTAGCCTTTGACAG+AGG	0.569891	2_2:+29345771	Msa0247310:CDS
ACAAGAGTTCTTGCATATTA+TGG	0.122595	2_2:+29346033	Msa0247310:three_prime_UTR
ACAGACAATCTTGGTCTTTC+GGG	0.288767	2_2:-29344693	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATAGATAGTAGAAGGATA+AGG	+	chr2_2:29342553-29342572	Msa0247310:five_prime_UTR	30.0%
AGATAGATAGACAGAGAAAA+CGG	+	chr2_2:29342593-29342612	Msa0247310:five_prime_UTR	30.0%
AAAGAGGAAGAAGAAGAATT+GGG	-	chr2_2:29342733-29342752	None:intergenic	30.0%
TAAAGAGGAAGAAGAAGAAT+TGG	-	chr2_2:29342734-29342753	None:intergenic	30.0%
AACATAGTTCCAACATGTTA+GGG	+	chr2_2:29343208-29343227	Msa0247310:intron	30.0%
CAATAAAAACCCTAACATGT+TGG	-	chr2_2:29343220-29343239	None:intergenic	30.0%
GTACTTGATTGTGTATTCAT+TGG	-	chr2_2:29343480-29343499	None:intergenic	30.0%
TTCTTTACCCAATCAAGTAA+TGG	-	chr2_2:29343559-29343578	None:intergenic	30.0%
TAGATTAAATGTGCGTTTGA+GGG	+	chr2_2:29343950-29343969	Msa0247310:intron	30.0%
TTACTGATATCATGTTTGAC+AGG	+	chr2_2:29344164-29344183	Msa0247310:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	29342533	29346081	29342533	ID=Msa0247310;Name=Msa0247310
chr2_2	mRNA	29342533	29346081	29342533	ID=Msa0247310-mRNA-1;Parent=Msa0247310;Name=Msa0247310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=113\|1\|1\|1\|1\|1\|3\|218\|164
chr2_2	exon	29342533	29342828	29342533	ID=Msa0247310-mRNA-1:exon:10434;Parent=Msa0247310-mRNA-1
chr2_2	exon	29344681	29344842	29344681	ID=Msa0247310-mRNA-1:exon:10435;Parent=Msa0247310-mRNA-1
chr2_2	exon	29345714	29346081	29345714	ID=Msa0247310-mRNA-1:exon:10436;Parent=Msa0247310-mRNA-1
chr2_2	five_prime_UTR	29342533	29342645	29342533	ID=Msa0247310-mRNA-1:five_prime_utr;Parent=Msa0247310-mRNA-1
chr2_2	CDS	29342646	29342828	29342646	ID=Msa0247310-mRNA-1:cds;Parent=Msa0247310-mRNA-1
chr2_2	CDS	29344681	29344842	29344681	ID=Msa0247310-mRNA-1:cds;Parent=Msa0247310-mRNA-1
chr2_2	CDS	29345714	29345863	29345714	ID=Msa0247310-mRNA-1:cds;Parent=Msa0247310-mRNA-1
chr2_2	three_prime_UTR	29345864	29346081	29345864	ID=Msa0247310-mRNA-1:three_prime_utr;Parent=Msa0247310-mRNA-1

Gene Sequence

>Msa0247310

ATGTTAACTTCTTCGCTCTCATTCCTTCATTCTTGCACATTTCCCTCTTCTTCCTCTTCACTGTTCACAGTTCCAACGCCGAATCCCAATTCTTCTTCTTCCTCTTTATCTTTTGTTGTTGAAGCAAAAGCCACTACTCGAAGGGAAGACAGAACTGCTCGCCATGTTCGTATCAGAAAGAAGGTTGAAGGAACACCCGAAAGACCAAGATTGTCTGTGTTTCGATCCAACAAGCATCTCTTTGTCCAAGTGATTGACGACACCAAGATGCATACACTTGCTTCAGCTTCAACAATGCAGAAGGCAATTGCTGAAGAGTTGAACTTCACCTCTGGTCCTACAATTGAAGTAGCAAAGAGGGTGGGTGAAATCATTGCAAAGTCCTGTCTGGAAATAGGGATCACAAAGGTAGCCTTTGACAGAGGTGGTTACCCATACCATGGCCGTGTTAAAGCTATTGCTGATGCGGCTCGCGAACATGGCCTCGAGTTCTAA

Protein sequence

>Msa0247310

MLTSSLSFLHSCTFPSSSSSLFTVPTPNPNSSSSSLSFVVEAKATTRREDRTARHVRIRKKVEGTPERPRLSVFRSNKHLFVQVIDDTKMHTLASASTMQKAIAEELNFTSGPTIEVAKRVGEIIAKSCLEIGITKVAFDRGGYPYHGRVKAIADAAREHGLEF*