AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0399180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0399180 MtrunA17_Chr3g0087481 92.797 236 13 2 1 233 1 235 7.95e-156 431
Msa0399180 MtrunA17_Chr1g0177101 42.614 176 101 0 58 233 108 283 1.55e-45 154
Msa0399180 MtrunA17_Chr7g0267571 40.526 190 109 1 48 233 99 288 1.80e-43 149
Msa0399180 MtrunA17_Chr1g0168601 32.917 240 143 4 1 233 1 229 5.80e-35 124
Msa0399180 MtrunA17_Chr1g0181111 34.630 257 135 5 1 233 25 272 1.12e-34 125
Msa0399180 MtrunA17_Chr3g0116631 40.212 189 109 2 46 233 97 282 2.45e-34 124
Msa0399180 MtrunA17_Chr3g0116631 39.241 79 48 0 57 135 205 283 7.25e-13 66.6
Msa0399180 MtrunA17_Chr4g0058151 38.286 175 103 2 59 233 123 292 1.51e-30 114
Msa0399180 MtrunA17_Chr4g0058151 44.872 78 43 0 59 136 217 294 1.18e-16 77.4
Msa0399180 MtrunA17_Chr4g0070231 29.381 194 111 3 60 231 133 322 1.08e-17 81.3
Msa0399180 MtrunA17_Chr4g0070231 31.492 181 110 4 53 233 41 207 1.44e-16 77.8
Msa0399180 MtrunA17_Chr6g0466451 27.619 210 127 5 32 227 79 277 1.65e-15 75.1
Msa0399180 MtrunA17_Chr6g0465631 27.619 210 127 5 32 227 79 277 1.71e-15 75.1
Msa0399180 MtrunA17_Chr8g0344491 29.834 181 113 4 53 233 57 223 2.37e-15 74.3
Msa0399180 MtrunA17_Chr8g0344491 27.228 202 120 4 53 231 142 339 1.95e-13 68.9
Msa0399180 MtrunA17_Chr4g0044541 28.070 171 111 2 60 230 36 194 4.55e-15 73.9
Msa0399180 MtrunA17_Chr4g0044541 30.366 191 124 4 49 233 204 391 1.15e-13 69.7
Msa0399180 MtrunA17_Chr3g0120721 25.000 184 121 3 53 233 13 182 1.32e-14 72.0
Msa0399180 MtrunA17_Chr3g0139111 28.191 188 107 3 53 233 55 221 1.40e-14 72.4
Msa0399180 MtrunA17_Chr3g0139111 25.258 194 118 3 60 230 147 336 9.33e-13 67.0
Msa0399180 MtrunA17_Chr1g0179701 30.303 198 124 6 43 233 225 415 1.51e-14 72.4
Msa0399180 MtrunA17_Chr1g0179701 26.455 189 127 2 44 232 48 224 5.38e-14 70.9
Msa0399180 MtrunA17_Chr6g0449481 25.258 194 120 4 47 233 34 209 2.48e-14 71.2
Msa0399180 MtrunA17_Chr3g0110211 27.586 174 113 2 61 233 28 189 4.78e-14 70.5
Msa0399180 MtrunA17_Chr1g0153181 29.327 208 134 7 32 230 184 387 1.22e-13 69.7
Msa0399180 MtrunA17_Chr1g0153181 24.561 171 117 2 60 230 34 192 3.55e-12 65.5
Msa0399180 MtrunA17_Chr3g0132451 25.455 220 148 6 20 230 44 256 2.02e-13 68.2
Msa0399180 MtrunA17_Chr6g0466501 27.326 172 111 4 60 230 27 185 2.09e-13 68.9
Msa0399180 MtrunA17_Chr1g0201151 30.102 196 112 5 43 223 193 378 2.44e-13 68.9
Msa0399180 MtrunA17_Chr0c09g0493511 30.808 198 113 9 42 227 105 290 4.64e-13 67.8
Msa0399180 MtrunA17_Chr5g0411091 31.429 175 113 5 58 230 96 265 5.50e-13 67.0
Msa0399180 MtrunA17_Chr7g0265341 29.444 180 118 4 60 233 251 427 6.08e-13 67.8
Msa0399180 MtrunA17_Chr7g0265341 27.746 173 113 3 60 232 72 232 5.67e-12 64.7
Msa0399180 MtrunA17_Chr7g0265341 27.072 181 117 5 56 233 156 324 1.91e-11 63.2
Msa0399180 MtrunA17_Chr3g0134141 24.561 171 117 2 60 230 26 184 5.60e-12 64.7
Msa0399180 MtrunA17_Chr3g0134141 32.240 183 109 7 60 233 205 381 2.14e-11 63.2
Msa0399180 MtrunA17_Chr3g0134141 29.032 186 114 6 55 233 104 278 9.71e-11 61.2
Msa0399180 MtrunA17_Chr2g0328791 24.719 178 127 2 57 233 14 185 1.44e-11 63.5
Msa0399180 MtrunA17_Chr6g0465751 25.581 172 114 4 60 230 27 185 2.30e-11 63.2
Msa0399180 MtrunA17_Chr5g0402191 26.554 177 115 4 58 233 4 166 4.52e-11 62.0
Msa0399180 MtrunA17_Chr8g0375101 25.568 176 118 3 58 233 4 166 5.53e-11 61.6
Msa0399180 MtrunA17_Chr4g0035051 34.940 83 54 0 151 233 2 84 6.78e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0399180 AT3G52150.2 68.812 202 57 4 38 233 52 253 1.44e-92 272
Msa0399180 AT3G52150.1 68.812 202 57 4 38 233 52 253 1.44e-92 272
Msa0399180 AT3G52380.1 41.885 191 103 2 49 233 107 295 3.13e-45 154
Msa0399180 AT1G60000.1 36.864 236 125 3 15 233 25 253 1.05e-38 135
Msa0399180 AT2G37220.1 36.548 197 95 2 59 233 92 280 1.02e-34 125
Msa0399180 AT5G50250.1 38.122 181 107 2 53 233 108 283 2.97e-34 124
Msa0399180 AT5G50250.1 40.741 81 48 0 56 136 205 285 1.29e-13 68.9
Msa0399180 AT4G24770.1 38.830 188 109 3 47 233 138 320 4.09e-31 117
Msa0399180 AT4G24770.1 46.341 82 43 1 55 136 242 322 3.49e-17 79.3
Msa0399180 AT4G24770.2 38.830 188 109 3 47 233 138 320 4.09e-31 117
Msa0399180 AT4G24770.2 46.341 82 43 1 55 136 242 322 3.49e-17 79.3
Msa0399180 AT1G01080.1 32.487 197 121 3 45 233 95 287 3.74e-23 95.1
Msa0399180 AT2G35410.1 33.871 186 112 4 49 228 86 266 5.18e-22 92.4
Msa0399180 AT1G01080.2 32.323 198 121 4 45 233 95 288 7.97e-22 91.7
Msa0399180 AT1G01080.3 32.258 186 114 3 45 222 95 276 6.21e-21 89.4
Msa0399180 AT1G22760.1 33.846 195 115 6 39 223 207 397 3.48e-18 83.6
Msa0399180 AT1G71770.1 33.333 195 116 6 39 223 217 407 4.87e-17 80.1
Msa0399180 AT1G71770.1 28.070 171 110 3 60 230 61 218 4.05e-12 65.5
Msa0399180 AT1G71770.2 33.333 195 116 6 39 223 217 407 4.87e-17 80.1
Msa0399180 AT1G71770.2 28.070 171 110 3 60 230 61 218 4.05e-12 65.5
Msa0399180 AT3G14100.1 32.044 181 109 4 53 233 54 220 9.59e-17 79.0
Msa0399180 AT3G14100.1 28.022 182 105 3 60 219 146 323 2.95e-13 68.9
Msa0399180 AT3G13224.3 29.189 185 108 6 56 233 8 176 1.20e-16 78.2
Msa0399180 AT3G16380.1 31.280 211 132 5 31 233 174 379 3.62e-16 77.4
Msa0399180 AT3G16380.1 29.213 178 108 5 60 233 114 277 1.75e-12 66.6
Msa0399180 AT3G13224.1 29.885 174 99 6 53 219 14 171 9.38e-16 73.9
Msa0399180 AT2G36660.1 30.114 176 116 3 60 230 203 376 2.17e-15 75.1
Msa0399180 AT2G36660.1 28.652 178 115 3 55 232 21 186 1.05e-12 67.4
Msa0399180 AT3G13224.2 28.723 188 111 6 53 233 14 185 2.34e-15 74.7
Msa0399180 AT1G54080.1 30.387 181 112 4 53 233 58 224 2.68e-15 74.7
Msa0399180 AT1G54080.1 26.804 194 115 4 60 230 150 339 2.49e-12 65.9
Msa0399180 AT1G49760.1 28.736 174 108 3 60 231 47 206 3.77e-15 74.7
Msa0399180 AT1G49760.1 30.769 169 110 3 60 223 226 392 3.89e-13 68.6
Msa0399180 AT1G49760.1 28.191 188 121 5 51 233 121 299 6.03e-12 65.1
Msa0399180 AT1G49760.2 28.736 174 108 3 60 231 47 206 3.77e-15 74.7
Msa0399180 AT1G49760.2 30.769 169 110 3 60 223 226 392 3.89e-13 68.6
Msa0399180 AT1G49760.2 28.191 188 121 5 51 233 121 299 6.03e-12 65.1
Msa0399180 AT4G09040.1 24.889 225 144 6 27 233 49 266 1.03e-14 72.4
Msa0399180 AT4G09040.2 26.263 198 132 5 40 233 19 206 1.10e-14 71.2
Msa0399180 AT1G17370.2 30.387 181 112 4 53 233 49 215 1.44e-14 72.4
Msa0399180 AT1G17370.2 27.461 193 114 5 60 231 141 328 5.82e-13 67.8
Msa0399180 AT1G17370.1 30.387 181 112 4 53 233 49 215 1.56e-14 72.4
Msa0399180 AT1G17370.1 25.641 195 118 4 60 231 141 331 2.60e-13 68.9
Msa0399180 AT2G23350.1 30.645 186 102 5 60 230 227 400 2.52e-14 72.0
Msa0399180 AT2G23350.1 31.844 179 111 5 56 233 132 300 6.08e-13 68.2
Msa0399180 AT1G54080.2 30.270 185 111 5 53 233 58 228 2.63e-14 72.0
Msa0399180 AT1G54080.2 28.743 167 92 4 87 230 181 343 4.91e-11 62.4
Msa0399180 AT4G34110.1 32.768 177 110 5 60 230 217 390 7.34e-14 70.9
Msa0399180 AT4G34110.1 30.270 185 113 6 55 233 116 290 3.07e-13 68.9
Msa0399180 AT4G34110.1 25.581 172 116 2 60 231 38 197 1.57e-12 67.0
Msa0399180 AT2G18510.1 27.429 175 114 2 60 233 27 189 3.04e-13 68.6
Msa0399180 AT3G53460.4 43.421 76 43 0 158 233 279 354 6.05e-13 67.8
Msa0399180 AT3G53460.4 38.961 77 47 0 59 135 279 355 1.60e-11 63.5
Msa0399180 AT3G53460.1 43.421 76 43 0 158 233 258 333 6.92e-13 67.4
Msa0399180 AT3G53460.1 44.304 79 44 0 59 137 100 178 2.16e-12 65.9
Msa0399180 AT3G53460.1 38.961 77 47 0 59 135 258 334 1.63e-11 63.5
Msa0399180 AT3G53460.3 43.421 76 43 0 158 233 258 333 6.92e-13 67.4
Msa0399180 AT3G53460.3 44.304 79 44 0 59 137 100 178 2.16e-12 65.9
Msa0399180 AT3G53460.3 38.961 77 47 0 59 135 258 334 1.63e-11 63.5
Msa0399180 AT3G53460.2 43.421 76 43 0 158 233 258 333 6.92e-13 67.4
Msa0399180 AT3G53460.2 44.304 79 44 0 59 137 100 178 2.16e-12 65.9
Msa0399180 AT3G53460.2 38.961 77 47 0 59 135 258 334 1.63e-11 63.5
Msa0399180 AT4G13860.1 43.836 73 41 0 158 230 4 76 9.18e-13 62.4
Msa0399180 AT4G13860.1 37.333 75 47 0 59 133 4 78 2.52e-11 58.5
Msa0399180 AT1G34140.1 32.222 180 114 5 60 233 121 298 1.28e-12 67.0
Msa0399180 AT5G40490.1 25.275 182 111 4 59 233 43 206 4.97e-12 65.1

Find 62 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAAACCTCCTGTTATTAA+AGG 0.194434 3_2:+21651299 None:intergenic
AGAAGGTGTTGTTGTCGTTT+TGG 0.261003 3_2:+21654938 None:intergenic
TTAAGTTTGTGTTGTGAGTT+AGG 0.283224 3_2:+21654970 None:intergenic
AAATAATCTTATTATCTTGT+TGG 0.293456 3_2:+21655135 None:intergenic
TTTATCTCATGACAGCAAAT+TGG 0.319543 3_2:-21651356 Msa0399180:intron
TGTTAACTGCAGTTGTTAGA+AGG 0.327875 3_2:-21650193 Msa0399180:intron
TGTATGACAAATACTCTAAA+AGG 0.332650 3_2:-21651549 Msa0399180:CDS
GCCAAGGTTTCACGGGTTCC+TGG 0.336172 3_2:-21651152 Msa0399180:CDS
ACAAGGTCTCAAAATCATTC+TGG 0.344549 3_2:+21650043 None:intergenic
ACCTCAAAATCCAGTGGTTT+CGG 0.344689 3_2:-21651128 Msa0399180:CDS
GCAGAAAATCCGAGTGAATA+AGG 0.353968 3_2:-21650170 Msa0399180:CDS
CAAGGTATATGTGGGAAATC+TGG 0.373394 3_2:-21651237 Msa0399180:CDS
TGTGGATGAAATTATGTAAC+TGG 0.376336 3_2:+21655052 None:intergenic
TTTCCCACATATACCTTGTA+AGG 0.379798 3_2:+21651242 None:intergenic
ACCATGTTCTTGAACAATCT+TGG 0.384608 3_2:+21654782 None:intergenic
TATGGGATGGTTAAAATTGA+TGG 0.399722 3_2:+21649806 None:intergenic
TGAAATTATGTAACTGGAAA+TGG 0.408088 3_2:+21655058 None:intergenic
GCGGATTCCTCGGCCTGGAC+TGG 0.418312 3_2:+21651278 None:intergenic
TGCATCAGTGAATGTTCATA+AGG 0.419312 3_2:+21649877 None:intergenic
CTCTTAGTGCCAAGGTTTCA+CGG 0.433896 3_2:-21651160 Msa0399180:CDS
TAAGTTTGTGTTGTGAGTTA+GGG 0.470682 3_2:+21654971 None:intergenic
GCATCAGTGAATGTTCATAA+GGG 0.471622 3_2:+21649878 None:intergenic
CCAAGGTTTCACGGGTTCCT+GGG 0.476496 3_2:-21651151 Msa0399180:CDS
CAGTCCTTACAAGGTATATG+TGG 0.476562 3_2:-21651246 Msa0399180:CDS
GTCTACAAATGCGGATTCCT+CGG 0.478263 3_2:+21651268 None:intergenic
AACAGGAGGTTTGCCAGTCC+AGG 0.481532 3_2:-21651291 Msa0399180:CDS
ATTTGTAGACAGTCCTTACA+AGG 0.497965 3_2:-21651255 Msa0399180:CDS
GTTACTCTCATGAATCTCCT+TGG 0.507839 3_2:+21650100 None:intergenic
ACTGATGCAGAGGCAAAAGT+TGG 0.512603 3_2:-21649863 Msa0399180:three_prime_UTR
CCCAGGAACCCGTGAAACCT+TGG 0.513301 3_2:+21651151 None:intergenic
TGTTTCTTCTGAACAAGCTA+CGG 0.513487 3_2:-21654874 Msa0399180:CDS
ATCTCATGACAGCAAATTGG+AGG 0.517324 3_2:-21651353 Msa0399180:intron
GGTTAAAATTGATGGATGAA+AGG 0.523734 3_2:+21649814 None:intergenic
TTGTGTTGTGAGTTAGGGAA+AGG 0.534279 3_2:+21654976 None:intergenic
AGTAACAAAGCCGAAACCAC+TGG 0.538663 3_2:+21651118 None:intergenic
TCTTAGTGCCAAGGTTTCAC+GGG 0.544466 3_2:-21651159 Msa0399180:CDS
AGCAAATGCTCTTAGTGCCA+AGG 0.546104 3_2:-21651168 Msa0399180:CDS
TGCTGCGTTTGCATCCTCAA+CGG 0.548877 3_2:+21651495 None:intergenic
GCCAAGATTGTTCAAGAACA+TGG 0.550336 3_2:-21654783 Msa0399180:CDS
GAATTGAGTTTGGTGTGGTG+TGG 0.553615 3_2:+21655034 None:intergenic
GTTAACTGCAGTTGTTAGAA+GGG 0.555240 3_2:-21650192 Msa0399180:intron
CAAATGCGGATTCCTCGGCC+TGG 0.555822 3_2:+21651273 None:intergenic
ACGTAAAGCTTTCTAACAGC+AGG 0.562554 3_2:+21654843 None:intergenic
TTTGTCAGCTTAGAGTTCCA+AGG 0.564425 3_2:-21650117 Msa0399180:three_prime_UTR
GTTGTAACGACAAGGGAAGA+AGG 0.583504 3_2:+21654921 None:intergenic
AATTGATGGATGAAAGGCAA+TGG 0.605109 3_2:+21649820 None:intergenic
GCAGCAGCTGAGAAACTCAA+TGG 0.608545 3_2:-21651478 Msa0399180:CDS
TGTTACAATGAAAACCGTTG+AGG 0.611936 3_2:-21651509 Msa0399180:CDS
AGGTTTGCCAGTCCAGGCCG+AGG 0.614335 3_2:-21651285 Msa0399180:CDS
GCTGTTAGAAAGCTTTACGT+TGG 0.619231 3_2:-21654840 Msa0399180:CDS
ATGAACATTCACTGATGCAG+AGG 0.619265 3_2:-21649873 Msa0399180:three_prime_UTR
AATTATGTAACTGGAAATGG+TGG 0.621073 3_2:+21655061 None:intergenic
CCAAACTCAATTCAAAACAA+TGG 0.623164 3_2:-21655024 Msa0399180:exon
TCTCATGACAGCAAATTGGA+GGG 0.637188 3_2:-21651352 Msa0399180:intron
CCTGGGACCTCAAAATCCAG+TGG 0.638570 3_2:-21651134 Msa0399180:CDS
AGTCCTTACAAGGTATATGT+GGG 0.639932 3_2:-21651245 Msa0399180:CDS
GTAAGGACTGTCTACAAATG+CGG 0.643041 3_2:+21651259 None:intergenic
TAACAACAATAGACACAATG+TGG 0.677279 3_2:+21649955 None:intergenic
AACGACGTGTTGTAACGACA+AGG 0.698213 3_2:+21654913 None:intergenic
TAAATGTGAAGAAAGTAACA+AGG 0.704256 3_2:+21650026 None:intergenic
ACGACGTGTTGTAACGACAA+GGG 0.707027 3_2:+21654914 None:intergenic
TCGTCATTACTAACAGTACG+AGG 0.729772 3_2:+21654810 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAATTCTTTAAAAGTA+AGG - chr3_2:21650966-21650985 Msa0399180:intron 10.0%
!!! TAAAAAAGTATATTTGAAAA+TGG - chr3_2:21652182-21652201 Msa0399180:intron 10.0%
!! TACAAATTAAAAATGATAAA+AGG + chr3_2:21652335-21652354 None:intergenic 10.0%
!! TATATGTTGAAAAATAAAAA+GGG + chr3_2:21654214-21654233 None:intergenic 10.0%
!! ATATATGTTGAAAAATAAAA+AGG + chr3_2:21654215-21654234 None:intergenic 10.0%
!!! TTTATATTACATTTTTCTTT+TGG - chr3_2:21654957-21654976 Msa0399180:CDS 10.0%
!! CATAACAAAAAAAAAATAAA+TGG + chr3_2:21655055-21655074 None:intergenic 10.0%
!! AAATAATCTTATTATCTTGT+TGG + chr3_2:21649832-21649851 None:intergenic 15.0%
!!! TGATTTTGTGAAATTAATTT+TGG - chr3_2:21650294-21650313 Msa0399180:intron 15.0%
!!! AAATTAATTTTGGTTGAAAT+GGG - chr3_2:21650304-21650323 Msa0399180:intron 15.0%
!! TTTAAAAGTAAGGTTAAAAT+GGG - chr3_2:21650976-21650995 Msa0399180:intron 15.0%
!! AAAATAAGTTGTAAAAAACA+AGG - chr3_2:21651163-21651182 Msa0399180:CDS 15.0%
!!! ATTATGTTTAATTTTATCAC+AGG - chr3_2:21651749-21651768 Msa0399180:intron 15.0%
!!! TTTTGATATTAATAGAAGTT+GGG + chr3_2:21651929-21651948 None:intergenic 15.0%
!! GGTTACATTAATATTAAAAT+AGG - chr3_2:21652774-21652793 Msa0399180:intron 15.0%
!!! ATGAATTTTACTCATTTATA+AGG - chr3_2:21653160-21653179 Msa0399180:intron 15.0%
!!! TTTTATTATGATTGATTCAT+AGG - chr3_2:21653389-21653408 Msa0399180:intron 15.0%
!!! ATTAACAATTTTCAATTTCA+GGG + chr3_2:21654278-21654297 None:intergenic 15.0%
!!! TTTTTTTTTGTTATGTGAAT+TGG - chr3_2:21655060-21655079 Msa0399180:five_prime_UTR 15.0%
!!! GAAATTAATTTTGGTTGAAA+TGG - chr3_2:21650303-21650322 Msa0399180:intron 20.0%
!! GAATTGAAGTTTGTAAAATT+AGG - chr3_2:21650688-21650707 Msa0399180:intron 20.0%
!!! CTTCATTTTGAAAAATTAAC+TGG - chr3_2:21650721-21650740 Msa0399180:intron 20.0%
!!! CTTTAAAAGTAAGGTTAAAA+TGG - chr3_2:21650975-21650994 Msa0399180:intron 20.0%
!! AATGTAGTATAATAGATTCA+AGG - chr3_2:21651193-21651212 Msa0399180:CDS 20.0%
!! ATAATAGATTCAAGGTAAAA+TGG - chr3_2:21651201-21651220 Msa0399180:CDS 20.0%
!! TAATTTCATTTAAGAAGAGA+AGG - chr3_2:21651418-21651437 Msa0399180:intron 20.0%
!! GTATTTCATTTAATAAGAGA+AGG - chr3_2:21651444-21651463 Msa0399180:intron 20.0%
!!! GTTTTGATATTAATAGAAGT+TGG + chr3_2:21651930-21651949 None:intergenic 20.0%
!! AAAACAAAACAAATCAAAGA+AGG - chr3_2:21651955-21651974 Msa0399180:intron 20.0%
!! TCAATACAAGAAAATCATAT+GGG + chr3_2:21652158-21652177 None:intergenic 20.0%
!! ATCAATACAAGAAAATCATA+TGG + chr3_2:21652159-21652178 None:intergenic 20.0%
!!! AAAAGTATATTTGAAAATGG+TGG - chr3_2:21652185-21652204 Msa0399180:intron 20.0%
!!! CATTTTTAATTTGTAGAAGT+TGG - chr3_2:21652340-21652359 Msa0399180:intron 20.0%
!!! GATTTTCTGTTTTAAGTTTA+TGG - chr3_2:21652502-21652521 Msa0399180:intron 20.0%
!! GAAATCAAAATTCTGTTAAA+GGG + chr3_2:21653010-21653029 None:intergenic 20.0%
!! TGAAATCAAAATTCTGTTAA+AGG + chr3_2:21653011-21653030 None:intergenic 20.0%
!!! AACAGAATTTTGATTTCATA+AGG - chr3_2:21653013-21653032 Msa0399180:intron 20.0%
!! TAAATGAGTAAAATTCATTG+AGG + chr3_2:21653158-21653177 None:intergenic 20.0%
!! TAATGTTCATTCAACAATTT+AGG - chr3_2:21653556-21653575 Msa0399180:intron 20.0%
!!! GAAAAATAAAAAGGGTATTT+CGG + chr3_2:21654206-21654225 None:intergenic 20.0%
!!! GATTAACAATTTTCAATTTC+AGG + chr3_2:21654279-21654298 None:intergenic 20.0%
!! GAAATTGAAAATTGTTAATC+TGG - chr3_2:21654279-21654298 Msa0399180:intron 20.0%
!! ATCAATCCTACATATATTAA+TGG - chr3_2:21654331-21654350 Msa0399180:intron 20.0%
!! ATGAAAAATATCAAAACTTG+AGG + chr3_2:21654582-21654601 None:intergenic 20.0%
!! TTACAATTTCTATCATGATT+TGG - chr3_2:21654646-21654665 Msa0399180:intron 20.0%
!! TACAATTTCTATCATGATTT+GGG - chr3_2:21654647-21654666 Msa0399180:intron 20.0%
! TGAAATTATGTAACTGGAAA+TGG + chr3_2:21649909-21649928 None:intergenic 25.0%
! ATGATGTAAACTGATGATAA+CGG - chr3_2:21650785-21650804 Msa0399180:intron 25.0%
!! TCACCTTAATTTGGTTAAAA+TGG - chr3_2:21650863-21650882 Msa0399180:intron 25.0%
!! CACCTTAATTTGGTTAAAAT+GGG - chr3_2:21650864-21650883 Msa0399180:intron 25.0%
!!! AACCCATTTTAACCAAATTA+AGG + chr3_2:21650869-21650888 None:intergenic 25.0%
! TATAACATTCAGTCTCTTAT+TGG + chr3_2:21651063-21651082 None:intergenic 25.0%
! CAATAAAAGAGTGAATGTTA+CGG - chr3_2:21651087-21651106 Msa0399180:CDS 25.0%
! ATTCAAGGTAAAATGGTAAA+TGG - chr3_2:21651208-21651227 Msa0399180:CDS 25.0%
! TAAAATGGTAAATGGAACAA+TGG - chr3_2:21651216-21651235 Msa0399180:CDS 25.0%
! CACTAAACATAATTTAGCTA+TGG - chr3_2:21651291-21651310 Msa0399180:CDS 25.0%
! TTTCAACTCCTTTATCTATT+TGG - chr3_2:21651529-21651548 Msa0399180:CDS 25.0%
! AAACGAAACCAAATAGATAA+AGG + chr3_2:21651540-21651559 None:intergenic 25.0%
!! TCTGATTTTCCCATATAATT+GGG + chr3_2:21651905-21651924 None:intergenic 25.0%
!! ATCTGATTTTCCCATATAAT+TGG + chr3_2:21651906-21651925 None:intergenic 25.0%
! AAGAAAATCATATGGGTTTA+GGG + chr3_2:21652151-21652170 None:intergenic 25.0%
! ATTGAAAAGCAACATAGAAA+TGG - chr3_2:21652393-21652412 Msa0399180:intron 25.0%
! TTGAAAAGCAACATAGAAAT+GGG - chr3_2:21652394-21652413 Msa0399180:intron 25.0%
!!! AATGGGATAATGTTTTTAGT+TGG - chr3_2:21652411-21652430 Msa0399180:intron 25.0%
! TAGGAGAATTTAGATTTCAA+TGG - chr3_2:21652793-21652812 Msa0399180:intron 25.0%
!! GAAATGTAGAATTTAGTTCA+TGG - chr3_2:21653102-21653121 Msa0399180:intron 25.0%
! GTTATATGATAAATCCTACA+TGG + chr3_2:21653242-21653261 None:intergenic 25.0%
! AGGATTTATCATATAACCTA+AGG - chr3_2:21653245-21653264 Msa0399180:intron 25.0%
! AAAACATACAAAGAAAGTTG+AGG + chr3_2:21653321-21653340 None:intergenic 25.0%
! TGTATGACAAATACTCTAAA+AGG - chr3_2:21653415-21653434 Msa0399180:intron 25.0%
!! CAACAATTTAGGTTTCTTAA+AGG - chr3_2:21653567-21653586 Msa0399180:intron 25.0%
!! TCCTGTTATTAAAGGTTTTT+CGG + chr3_2:21653660-21653679 None:intergenic 25.0%
!! TAGCCTTAAAAATTTCTTCT+CGG - chr3_2:21653769-21653788 Msa0399180:intron 25.0%
!! TTTCCGAGAAGAAATTTTTA+AGG + chr3_2:21653775-21653794 None:intergenic 25.0%
! AGATGAAAAACAATCTACAA+AGG - chr3_2:21654106-21654125 Msa0399180:intron 25.0%
! GATGAAAAACAATCTACAAA+GGG - chr3_2:21654107-21654126 Msa0399180:intron 25.0%
! GATTTGATAAGAAATCCAAA+CGG + chr3_2:21654314-21654333 None:intergenic 25.0%
! AATCCTACATATATTAATGG+AGG - chr3_2:21654334-21654353 Msa0399180:intron 25.0%
! ATCCTACATATATTAATGGA+GGG - chr3_2:21654335-21654354 Msa0399180:intron 25.0%
!! AGTTTAGAATATTGATCATG+TGG - chr3_2:21654393-21654412 Msa0399180:intron 25.0%
!! AATTTAGTTCCTCAAATTGT+AGG + chr3_2:21654438-21654457 None:intergenic 25.0%
! ACAATTTGAGGAACTAAATT+AGG - chr3_2:21654438-21654457 Msa0399180:intron 25.0%
! ATGTTAACATATTTGGAGAT+GGG + chr3_2:21654623-21654642 None:intergenic 25.0%
! GTAAGTCATGTTAACATATT+TGG + chr3_2:21654630-21654649 None:intergenic 25.0%
! ACAATTTCTATCATGATTTG+GGG - chr3_2:21654648-21654667 Msa0399180:intron 25.0%
! TAAATGTGAAGAAAGTAACA+AGG + chr3_2:21654941-21654960 None:intergenic 25.0%
! TCTTGTTGGAAATGAGTTTT+TGG + chr3_2:21649818-21649837 None:intergenic 30.0%
!!! ATGGTGGTTTTGTTTTTAAG+AGG + chr3_2:21649890-21649909 None:intergenic 30.0%
AATTATGTAACTGGAAATGG+TGG + chr3_2:21649906-21649925 None:intergenic 30.0%
TGTGGATGAAATTATGTAAC+TGG + chr3_2:21649915-21649934 None:intergenic 30.0%
!!! CCATTGTTTTGAATTGAGTT+TGG + chr3_2:21649943-21649962 None:intergenic 30.0%
CCAAACTCAATTCAAAACAA+TGG - chr3_2:21649940-21649959 Msa0399180:three_prime_UTR 30.0%
TAAGTTTGTGTTGTGAGTTA+GGG + chr3_2:21649996-21650015 None:intergenic 30.0%
TTAAGTTTGTGTTGTGAGTT+AGG + chr3_2:21649997-21650016 None:intergenic 30.0%
!!! AGTTTTGTTAGATCTCTTGT+AGG - chr3_2:21650464-21650483 Msa0399180:intron 30.0%
!! GTTTTGTTAGATCTCTTGTA+GGG - chr3_2:21650465-21650484 Msa0399180:intron 30.0%
! TTTTGTTAGATCTCTTGTAG+GGG - chr3_2:21650466-21650485 Msa0399180:intron 30.0%
! TAAAATGGGTTTGTTCAATG+TGG - chr3_2:21650878-21650897 Msa0399180:intron 30.0%
! AAAATGGGTTTGTTCAATGT+GGG - chr3_2:21650879-21650898 Msa0399180:intron 30.0%
! TTATTGGCTGAAACTCATAT+GGG + chr3_2:21651047-21651066 None:intergenic 30.0%
! CGTAACATTCACTCTTTTAT+TGG + chr3_2:21651089-21651108 None:intergenic 30.0%
! GAAAAAGTACGAAGAAAACT+TGG - chr3_2:21651244-21651263 Msa0399180:CDS 30.0%
ACTTCAATCCAAACATTATC+AGG - chr3_2:21651351-21651370 Msa0399180:intron 30.0%
! GAATTTCACCTGATAATGTT+TGG + chr3_2:21651362-21651381 None:intergenic 30.0%
ATAATGAGAGAAGTCTTTAG+TGG - chr3_2:21651873-21651892 Msa0399180:intron 30.0%
TAATGAGAGAAGTCTTTAGT+GGG - chr3_2:21651874-21651893 Msa0399180:intron 30.0%
CAAGAAAATCATATGGGTTT+AGG + chr3_2:21652152-21652171 None:intergenic 30.0%
TGTTTCAGTTGTTTGTTTAG+AGG - chr3_2:21652208-21652227 Msa0399180:intron 30.0%
GTTTCAGTTGTTTGTTTAGA+GGG - chr3_2:21652209-21652228 Msa0399180:intron 30.0%
TTGTTTGTTTAGAGGGATTT+GGG - chr3_2:21652216-21652235 Msa0399180:intron 30.0%
!! TGGATTTGCTTATTTCTGTT+AGG - chr3_2:21652263-21652282 Msa0399180:intron 30.0%
!! GGATTTGCTTATTTCTGTTA+GGG - chr3_2:21652264-21652283 Msa0399180:intron 30.0%
!! GATTTGCTTATTTCTGTTAG+GGG - chr3_2:21652265-21652284 Msa0399180:intron 30.0%
!! ATTTGCTTATTTCTGTTAGG+GGG - chr3_2:21652266-21652285 Msa0399180:intron 30.0%
! AAAGGTTCTAGCATCAAAAT+CGG + chr3_2:21652317-21652336 None:intergenic 30.0%
TATTAATGTAACCTTTGCCA+GGG + chr3_2:21652767-21652786 None:intergenic 30.0%
ATATTAATGTAACCTTTGCC+AGG + chr3_2:21652768-21652787 None:intergenic 30.0%
GAGAATTTAGATTTCAATGG+TGG - chr3_2:21652796-21652815 Msa0399180:intron 30.0%
AATTTAGATTTCAATGGTGG+TGG - chr3_2:21652799-21652818 Msa0399180:intron 30.0%
!! AACAGTAAACTTGTTGTCAT+TGG - chr3_2:21652852-21652871 Msa0399180:intron 30.0%
AAGGATTAATGTAGTAGTGA+TGG - chr3_2:21653032-21653051 Msa0399180:intron 30.0%
TATTCTTGATAGACTAAGGT+AGG + chr3_2:21653068-21653087 None:intergenic 30.0%
AAGCTATTCTTGATAGACTA+AGG + chr3_2:21653072-21653091 None:intergenic 30.0%
GTCTATCAAGAATAGCTTAA+AGG - chr3_2:21653074-21653093 Msa0399180:intron 30.0%
TTTATCTCATGACAGCAAAT+TGG - chr3_2:21653608-21653627 Msa0399180:intron 30.0%
ACCGAAAAACCTTTAATAAC+AGG - chr3_2:21653656-21653675 Msa0399180:intron 30.0%
GAAAAACCTTTAATAACAGG+AGG - chr3_2:21653659-21653678 Msa0399180:intron 30.0%
TTTCAGCATGCAAAATAAAC+AGG + chr3_2:21653943-21653962 None:intergenic 30.0%
TTATATGTCGCAAAACAGAA+CGG + chr3_2:21654249-21654268 None:intergenic 30.0%
ATCCCTCCATTAATATATGT+AGG + chr3_2:21654340-21654359 None:intergenic 30.0%
TGATATAGTCCTACAATTTG+AGG - chr3_2:21654426-21654445 Msa0399180:intron 30.0%
CATCAACAAAGAGACAAAAA+GGG + chr3_2:21654544-21654563 None:intergenic 30.0%
ACATCAACAAAGAGACAAAA+AGG + chr3_2:21654545-21654564 None:intergenic 30.0%
CATGTTAACATATTTGGAGA+TGG + chr3_2:21654624-21654643 None:intergenic 30.0%
AGTTAACATACAGCAAATCA+AGG + chr3_2:21654759-21654778 None:intergenic 30.0%
TAACAACAATAGACACAATG+TGG + chr3_2:21655012-21655031 None:intergenic 30.0%
!! GTTTTGAATTGAGTTTGGTG+TGG + chr3_2:21649938-21649957 None:intergenic 35.0%
!!! TGTTGTCGTTTTGGGTTTTA+AGG + chr3_2:21650020-21650039 None:intergenic 35.0%
TGTTTCTTCTGAACAAGCTA+CGG - chr3_2:21650090-21650109 Msa0399180:three_prime_UTR 35.0%
ACCATGTTCTTGAACAATCT+TGG + chr3_2:21650185-21650204 None:intergenic 35.0%
!! AAAGCTGAGGTACTTTTTGT+TGG - chr3_2:21650214-21650233 Msa0399180:intron 35.0%
!! GTAATTTGTTTGAGCAAGAG+CGG - chr3_2:21650386-21650405 Msa0399180:intron 35.0%
TTATATGTGTCGTGTTGTGT+CGG - chr3_2:21650592-21650611 Msa0399180:intron 35.0%
!! GTAAACTGATGATAACGGAT+TGG - chr3_2:21650790-21650809 Msa0399180:intron 35.0%
CTATCACGAACAAAACTCTT+GGG - chr3_2:21650829-21650848 Msa0399180:intron 35.0%
! CTTATTGGCTGAAACTCATA+TGG + chr3_2:21651048-21651067 None:intergenic 35.0%
GGTGAGTGTTAGAAAGAAAA+TGG - chr3_2:21651108-21651127 Msa0399180:CDS 35.0%
AGTACGAAGAAAACTTGGTT+TGG - chr3_2:21651249-21651268 Msa0399180:CDS 35.0%
!! AGAAAACTTGGTTTGGCTAA+TGG - chr3_2:21651256-21651275 Msa0399180:CDS 35.0%
CTCTTTGTAAATGATCACAC+AGG + chr3_2:21651600-21651619 None:intergenic 35.0%
CTGTGTGATCATTTACAAAG+AGG - chr3_2:21651598-21651617 Msa0399180:intron 35.0%
GTCTTGAATTAGAACCTTAC+AGG - chr3_2:21651636-21651655 Msa0399180:intron 35.0%
CCTTCAGCAAAAAAAGTTGA+GGG + chr3_2:21651831-21651850 None:intergenic 35.0%
!! TGGGAAGTACCCAATTATAT+GGG - chr3_2:21651893-21651912 Msa0399180:intron 35.0%
! ACCGTCTCTTAACTTGAATT+CGG - chr3_2:21652079-21652098 Msa0399180:intron 35.0%
GTTGTTTGTTTAGAGGGATT+TGG - chr3_2:21652215-21652234 Msa0399180:intron 35.0%
! TTAGCACTGAAGTGTTTGAA+TGG - chr3_2:21652243-21652262 Msa0399180:intron 35.0%
!! GTATTATGCTGCTACTTTCA+TGG - chr3_2:21652449-21652468 Msa0399180:intron 35.0%
ATGTACTTCTTACCAAAGCA+AGG + chr3_2:21652479-21652498 None:intergenic 35.0%
! TTATGGCTGTTTATCCCTTT+TGG - chr3_2:21652519-21652538 Msa0399180:intron 35.0%
TATAAGGTGAAACTGTTCAG+TGG - chr3_2:21653176-21653195 Msa0399180:intron 35.0%
TGTTCAGTACATGTCATCAA+TGG + chr3_2:21653216-21653235 None:intergenic 35.0%
TCTTGTCAACTCATATCCTT+AGG + chr3_2:21653264-21653283 None:intergenic 35.0%
TGTTACAATGAAAACCGTTG+AGG - chr3_2:21653455-21653474 Msa0399180:intron 35.0%
ATTTGTAGACAGTCCTTACA+AGG - chr3_2:21653709-21653728 Msa0399180:intron 35.0%
AGTCCTTACAAGGTATATGT+GGG - chr3_2:21653719-21653738 Msa0399180:intron 35.0%
TTTCCCACATATACCTTGTA+AGG + chr3_2:21653725-21653744 None:intergenic 35.0%
!!! TGTTACTTTTTCATCAGACG+AGG - chr3_2:21653862-21653881 Msa0399180:intron 35.0%
GCATGCAAAATAAACAGGAA+GGG + chr3_2:21653938-21653957 None:intergenic 35.0%
AGCATGCAAAATAAACAGGA+AGG + chr3_2:21653939-21653958 None:intergenic 35.0%
CCATGTACTTGAAGTATATC+AGG + chr3_2:21653969-21653988 None:intergenic 35.0%
CCTGATATACTTCAAGTACA+TGG - chr3_2:21653966-21653985 Msa0399180:intron 35.0%
GTTTGGAGAAGTAACTCTAA+CGG + chr3_2:21653994-21654013 None:intergenic 35.0%
TTCATGATCATCATCAAGCA+AGG + chr3_2:21654016-21654035 None:intergenic 35.0%
AAGATTGGCAAAATGTTAGC+AGG - chr3_2:21654135-21654154 Msa0399180:intron 35.0%
TATATGTCGCAAAACAGAAC+GGG + chr3_2:21654248-21654267 None:intergenic 35.0%
TGATAAGAAATCCAAACGGA+GGG + chr3_2:21654310-21654329 None:intergenic 35.0%
TTGATAAGAAATCCAAACGG+AGG + chr3_2:21654311-21654330 None:intergenic 35.0%
CACAAATGTGATGTTTATGC+GGG + chr3_2:21654496-21654515 None:intergenic 35.0%
CCACAAATGTGATGTTTATG+CGG + chr3_2:21654497-21654516 None:intergenic 35.0%
! ATGAGAGCAGCTATTTCATT+TGG + chr3_2:21654521-21654540 None:intergenic 35.0%
ATTTGGGGACTCTATTCAAT+GGG - chr3_2:21654663-21654682 Msa0399180:intron 35.0%
TGTTAACTGCAGTTGTTAGA+AGG - chr3_2:21654771-21654790 Msa0399180:CDS 35.0%
GTTAACTGCAGTTGTTAGAA+GGG - chr3_2:21654772-21654791 Msa0399180:CDS 35.0%
!! TTTTCTACGCCTTATTCACT+CGG + chr3_2:21654806-21654825 None:intergenic 35.0%
ACAAGGTCTCAAAATCATTC+TGG + chr3_2:21654924-21654943 None:intergenic 35.0%
GCATCAGTGAATGTTCATAA+GGG + chr3_2:21655089-21655108 None:intergenic 35.0%
TGCATCAGTGAATGTTCATA+AGG + chr3_2:21655090-21655109 None:intergenic 35.0%
! AATTGATGGATGAAAGGCAA+TGG + chr3_2:21655147-21655166 None:intergenic 35.0%
TTGTGTTGTGAGTTAGGGAA+AGG + chr3_2:21649991-21650010 None:intergenic 40.0%
!!! GAAGGTGTTGTTGTCGTTTT+GGG + chr3_2:21650028-21650047 None:intergenic 40.0%
!!! AGAAGGTGTTGTTGTCGTTT+TGG + chr3_2:21650029-21650048 None:intergenic 40.0%
ACGTAAAGCTTTCTAACAGC+AGG + chr3_2:21650124-21650143 None:intergenic 40.0%
GCTGTTAGAAAGCTTTACGT+TGG - chr3_2:21650124-21650143 Msa0399180:three_prime_UTR 40.0%
TCGTCATTACTAACAGTACG+AGG + chr3_2:21650157-21650176 None:intergenic 40.0%
GCCAAGATTGTTCAAGAACA+TGG - chr3_2:21650181-21650200 Msa0399180:CDS 40.0%
CATAGACTAATCTCTCATGC+CGG + chr3_2:21650647-21650666 None:intergenic 40.0%
!! GATGATAACGGATTGGATGT+TGG - chr3_2:21650797-21650816 Msa0399180:intron 40.0%
!! TAACGGATTGGATGTTGGAT+TGG - chr3_2:21650802-21650821 Msa0399180:intron 40.0%
!! AACGGATTGGATGTTGGATT+GGG - chr3_2:21650803-21650822 Msa0399180:intron 40.0%
!!! CCAAGAGTTTTGTTCGTGAT+AGG + chr3_2:21650831-21650850 None:intergenic 40.0%
CCTATCACGAACAAAACTCT+TGG - chr3_2:21650828-21650847 Msa0399180:intron 40.0%
! GTGGAGTGTTCACCTTAATT+TGG - chr3_2:21650854-21650873 Msa0399180:intron 40.0%
GCACACTTAAGAACGTAAAG+TGG - chr3_2:21651016-21651035 Msa0399180:intron 40.0%
!! TGGTTTGGCTAATGGACTTA+AGG - chr3_2:21651264-21651283 Msa0399180:CDS 40.0%
TCTGCTGAGGATTTCTAATG+CGG + chr3_2:21651662-21651681 None:intergenic 40.0%
CTTGCTTATTTAGTCTGCTG+AGG + chr3_2:21651675-21651694 None:intergenic 40.0%
! TTATCACAGGAGTGCATTGT+AGG - chr3_2:21651762-21651781 Msa0399180:intron 40.0%
GCAAAAAAAGTTGAGGGAGA+GGG + chr3_2:21651825-21651844 None:intergenic 40.0%
AGCAAAAAAAGTTGAGGGAG+AGG + chr3_2:21651826-21651845 None:intergenic 40.0%
!!! CCCTCAACTTTTTTTGCTGA+AGG - chr3_2:21651828-21651847 Msa0399180:intron 40.0%
GCCTTCAGCAAAAAAAGTTG+AGG + chr3_2:21651832-21651851 None:intergenic 40.0%
TTGCTGAAGGCAGAAAGAAA+TGG - chr3_2:21651841-21651860 Msa0399180:intron 40.0%
TGCTGAAGGCAGAAAGAAAT+GGG - chr3_2:21651842-21651861 Msa0399180:intron 40.0%
!! GTGGGAAGTACCCAATTATA+TGG - chr3_2:21651892-21651911 Msa0399180:intron 40.0%
AGAGGAAGAGGATAAAGAAG+AGG + chr3_2:21652052-21652071 None:intergenic 40.0%
TAAGAGACGGTAAGAGAAAG+AGG + chr3_2:21652070-21652089 None:intergenic 40.0%
! CCCGAATTCAAGTTAAGAGA+CGG + chr3_2:21652083-21652102 None:intergenic 40.0%
! CCGTCTCTTAACTTGAATTC+GGG - chr3_2:21652080-21652099 Msa0399180:intron 40.0%
! TTGAATTCGGGTATTTTCCG+CGG - chr3_2:21652092-21652111 Msa0399180:intron 40.0%
ATTTGAAAGATCTCTCACCG+CGG + chr3_2:21652112-21652131 None:intergenic 40.0%
TTTCATGGAGAACCTTGCTT+TGG - chr3_2:21652464-21652483 Msa0399180:intron 40.0%
TCTTGTCTTGCAGACCAAAA+GGG + chr3_2:21652536-21652555 None:intergenic 40.0%
ATCTTGTCTTGCAGACCAAA+AGG + chr3_2:21652537-21652556 None:intergenic 40.0%
TGGTCTGCAAGACAAGATTA+AGG - chr3_2:21652539-21652558 Msa0399180:intron 40.0%
CCATTAATGTGCGATGCAAA+TGG + chr3_2:21652635-21652654 None:intergenic 40.0%
CCATTTGCATCGCACATTAA+TGG - chr3_2:21652632-21652651 Msa0399180:intron 40.0%
!! TTAGATTTCAATGGTGGTGG+TGG - chr3_2:21652802-21652821 Msa0399180:intron 40.0%
! CTTGTTGTCATTGGACTGAA+AGG - chr3_2:21652861-21652880 Msa0399180:intron 40.0%
GCAGTTTCAAGAACTTGAAC+CGG + chr3_2:21652890-21652909 Msa0399190:CDS 40.0%
! TTACCCTGTGTTTTACACAG+AGG + chr3_2:21652912-21652931 Msa0399190:CDS 40.0%
TGTACTGAACAATGCCATGT+AGG - chr3_2:21653225-21653244 Msa0399180:intron 40.0%
CTTGATGCACTCGATATTTG+TGG + chr3_2:21653357-21653376 None:intergenic 40.0%
ATCTCATGACAGCAAATTGG+AGG - chr3_2:21653611-21653630 Msa0399180:intron 40.0%
TCTCATGACAGCAAATTGGA+GGG - chr3_2:21653612-21653631 Msa0399180:intron 40.0%
GGCAAACCTCCTGTTATTAA+AGG + chr3_2:21653668-21653687 None:intergenic 40.0%
GTAAGGACTGTCTACAAATG+CGG + chr3_2:21653708-21653727 None:intergenic 40.0%
CAGTCCTTACAAGGTATATG+TGG - chr3_2:21653718-21653737 Msa0399180:intron 40.0%
CAAGGTATATGTGGGAAATC+TGG - chr3_2:21653727-21653746 Msa0399180:intron 40.0%
ACCTCAAAATCCAGTGGTTT+CGG - chr3_2:21653836-21653855 Msa0399180:intron 40.0%
GATCATCATCAAGCAAGGTT+TGG + chr3_2:21654011-21654030 None:intergenic 40.0%
CTACCATAAACCCTTCTAGT+AGG + chr3_2:21654164-21654183 None:intergenic 40.0%
CCGCATAAACATCACATTTG+TGG - chr3_2:21654494-21654513 Msa0399180:intron 40.0%
GATTTGGGGACTCTATTCAA+TGG - chr3_2:21654662-21654681 Msa0399180:intron 40.0%
GCAGAAAATCCGAGTGAATA+AGG - chr3_2:21654794-21654813 Msa0399180:CDS 40.0%
TTTGTCAGCTTAGAGTTCCA+AGG - chr3_2:21654847-21654866 Msa0399180:CDS 40.0%
GTTACTCTCATGAATCTCCT+TGG + chr3_2:21654867-21654886 None:intergenic 40.0%
ATGAACATTCACTGATGCAG+AGG - chr3_2:21655091-21655110 Msa0399180:five_prime_UTR 40.0%
!! GAATTGAGTTTGGTGTGGTG+TGG + chr3_2:21649933-21649952 None:intergenic 45.0%
GTTGTAACGACAAGGGAAGA+AGG + chr3_2:21650046-21650065 None:intergenic 45.0%
ACGACGTGTTGTAACGACAA+GGG + chr3_2:21650053-21650072 None:intergenic 45.0%
AACGACGTGTTGTAACGACA+AGG + chr3_2:21650054-21650073 None:intergenic 45.0%
!! TGGTGCTGTTGAAAAAGCTG+AGG - chr3_2:21650201-21650220 Msa0399180:intron 45.0%
ATTTGTTTGAGCAAGAGCGG+TGG - chr3_2:21650389-21650408 Msa0399180:intron 45.0%
GAATTCGAATCCAGAACCTC+CGG + chr3_2:21650431-21650450 None:intergenic 45.0%
CGTATCCATGCTTCATTGAG+CGG + chr3_2:21650498-21650517 None:intergenic 45.0%
CGCTCAATGAAGCATGGATA+CGG - chr3_2:21650496-21650515 Msa0399180:intron 45.0%
! CCTCTCATTGTTGTTCTAGC+CGG - chr3_2:21650625-21650644 Msa0399180:intron 45.0%
CGAACAAAACTCTTGGGTAG+TGG - chr3_2:21650835-21650854 Msa0399180:intron 45.0%
TGCTGTTCTCATTCTCAGAG+TGG - chr3_2:21651383-21651402 Msa0399180:intron 45.0%
GATTTCTAATGCGGCCTGTA+AGG + chr3_2:21651653-21651672 None:intergenic 45.0%
! CTTTGGAGAAAAGAGTGTGG+CGG + chr3_2:21651997-21652016 None:intergenic 45.0%
! GCCACACTCTTTTCTCCAAA+GGG - chr3_2:21651996-21652015 Msa0399180:intron 45.0%
! CCACACTCTTTTCTCCAAAG+GGG - chr3_2:21651997-21652016 Msa0399180:intron 45.0%
! CTCTTTTCTCCAAAGGGGTT+TGG - chr3_2:21652002-21652021 Msa0399180:intron 45.0%
ATACCAAAGCCAAACCCCTT+TGG + chr3_2:21652014-21652033 None:intergenic 45.0%
ACGGTAAGAGAAAGAGGAAG+AGG + chr3_2:21652064-21652083 None:intergenic 45.0%
!! TGCTTATTTCTGTTAGGGGG+AGG - chr3_2:21652269-21652288 Msa0399180:intron 45.0%
!! GCTTATTTCTGTTAGGGGGA+GGG - chr3_2:21652270-21652289 Msa0399180:intron 45.0%
!! GTTTTGTTGCAGGAAGAGAG+TGG - chr3_2:21652672-21652691 Msa0399180:intron 45.0%
TCATTGGACTGAAAGGTCAC+CGG - chr3_2:21652868-21652887 Msa0399180:intron 45.0%
ACTGCCTCTGTGTAAAACAC+AGG - chr3_2:21652905-21652924 Msa0399180:intron 45.0%
CTGCCTCTGTGTAAAACACA+GGG - chr3_2:21652906-21652925 Msa0399180:intron 45.0%
ACTGCTCACAATGCACCAAA+TGG - chr3_2:21652933-21652952 Msa0399180:intron 45.0%
AATTCTGTTAAAGGGCAGCC+CGG + chr3_2:21653002-21653021 None:intergenic 45.0%
! TGTAGTAGTGATGGTGAGTC+AGG - chr3_2:21653041-21653060 Msa0399180:intron 45.0%
GTCTACAAATGCGGATTCCT+CGG + chr3_2:21653699-21653718 None:intergenic 45.0%
AGTAACAAAGCCGAAACCAC+TGG + chr3_2:21653849-21653868 None:intergenic 45.0%
!! CTACAAAGGGCGTCTAAGAT+TGG - chr3_2:21654120-21654139 Msa0399180:intron 45.0%
CCATAAACCCTTCTAGTAGG+AGG + chr3_2:21654161-21654180 None:intergenic 45.0%
CCTCCTACTAGAAGGGTTTA+TGG - chr3_2:21654158-21654177 Msa0399180:intron 45.0%
AAGAAATCCAAACGGAGGGA+CGG + chr3_2:21654306-21654325 None:intergenic 45.0%
TATGCGGGAACTTGTGATGA+TGG + chr3_2:21654481-21654500 None:intergenic 45.0%
ACTGATGCAGAGGCAAAAGT+TGG - chr3_2:21655101-21655120 Msa0399180:intron 45.0%
TGGTTCCGTTCCAGCTTAAC+CGG - chr3_2:21650409-21650428 Msa0399180:intron 50.0%
AACCTCCGGTTAAGCTGGAA+CGG + chr3_2:21650417-21650436 None:intergenic 50.0%
GTTTGCCGCTCAATGAAGCA+TGG - chr3_2:21650490-21650509 Msa0399180:intron 50.0%
TGAAGCATGGATACGGACAC+CGG - chr3_2:21650503-21650522 Msa0399180:intron 50.0%
CCGGCTAGAACAACAATGAG+AGG + chr3_2:21650628-21650647 None:intergenic 50.0%
! ACAGGAGTGCATTGTAGGTG+TGG - chr3_2:21651767-21651786 Msa0399180:intron 50.0%
! CGCCACACTCTTTTCTCCAA+AGG - chr3_2:21651995-21652014 Msa0399180:intron 50.0%
! CCCCTTTGGAGAAAAGAGTG+TGG + chr3_2:21652000-21652019 None:intergenic 50.0%
! TCTCCAAAGGGGTTTGGCTT+TGG - chr3_2:21652008-21652027 Msa0399180:intron 50.0%
!! CAAAAGTGCCATTCGCACCA+CGG - chr3_2:21652566-21652585 Msa0399180:intron 50.0%
TCTGGCAGTGAAACAGTAGC+TGG - chr3_2:21652596-21652615 Msa0399180:intron 50.0%
GCATCGCACATTAATGGTGC+TGG - chr3_2:21652638-21652657 Msa0399180:intron 50.0%
CTTTGCCAGGGAGAGAAAAC+AGG + chr3_2:21652755-21652774 None:intergenic 50.0%
! CTGTTTTCTCTCCCTGGCAA+AGG - chr3_2:21652753-21652772 Msa0399180:intron 50.0%
!! GATTTCAATGGTGGTGGTGG+TGG - chr3_2:21652805-21652824 Msa0399180:intron 50.0%
GCTCACAATGCACCAAATGG+CGG - chr3_2:21652936-21652955 Msa0399180:intron 50.0%
CTCACAATGCACCAAATGGC+GGG - chr3_2:21652937-21652956 Msa0399180:intron 50.0%
TGCTGCGTTTGCATCCTCAA+CGG + chr3_2:21653472-21653491 None:intergenic 50.0%
GCAGCAGCTGAGAAACTCAA+TGG - chr3_2:21653486-21653505 Msa0399180:intron 50.0%
! GCCGAAACCACTGGATTTTG+AGG + chr3_2:21653840-21653859 None:intergenic 50.0%
TTAGCAGGCCTCCTACTAGA+AGG - chr3_2:21654150-21654169 Msa0399180:intron 50.0%
TAGCAGGCCTCCTACTAGAA+GGG - chr3_2:21654151-21654170 Msa0399180:intron 50.0%
TTCCGTTCCAGCTTAACCGG+AGG - chr3_2:21650412-21650431 Msa0399180:intron 55.0%
TCCAGCTTAACCGGAGGTTC+TGG - chr3_2:21650418-21650437 Msa0399180:intron 55.0%
TCCAGAACCTCCGGTTAAGC+TGG + chr3_2:21650422-21650441 None:intergenic 55.0%
GTCAGTATCCGTGTCGTGTC+CGG + chr3_2:21650525-21650544 None:intergenic 55.0%
GGAGTGCATTGTAGGTGTGG+TGG - chr3_2:21651770-21651789 Msa0399180:intron 55.0%
AGATACGACCGTGGTGCGAA+TGG + chr3_2:21652577-21652596 None:intergenic 55.0%
CAGTAGCTGGTCGTCAGTTG+AGG - chr3_2:21652609-21652628 Msa0399180:intron 55.0%
!! TAATGGTGCTGGTGCAGCAC+TGG - chr3_2:21652649-21652668 Msa0399180:intron 55.0%
!! AATGGTGCTGGTGCAGCACT+GGG - chr3_2:21652650-21652669 Msa0399180:intron 55.0%
!!! GCAGCACTGGGTTTTGTTGC+AGG - chr3_2:21652662-21652681 Msa0399180:intron 55.0%
! CACGTCCTGTTTTCTCTCCC+TGG - chr3_2:21652747-21652766 Msa0399180:intron 55.0%
!! TTCAATGGTGGTGGTGGTGG+TGG - chr3_2:21652808-21652827 Msa0399180:intron 55.0%
ACAAAGCTCCCGCCTATGCA+GGG + chr3_2:21652976-21652995 Msa0399190:CDS 55.0%
AACAGGAGGTTTGCCAGTCC+AGG - chr3_2:21653673-21653692 Msa0399180:intron 55.0%
!!! CCACTGGATTTTGAGGTCCC+AGG + chr3_2:21653833-21653852 None:intergenic 55.0%
CCTGGGACCTCAAAATCCAG+TGG - chr3_2:21653830-21653849 Msa0399180:intron 55.0%
TACGGACACCGGACACGACA+CGG - chr3_2:21650514-21650533 Msa0399180:intron 60.0%
TCGCACCACGGTCGTATCTC+TGG - chr3_2:21652578-21652597 Msa0399180:intron 60.0%
CACTGCCAGAGATACGACCG+TGG + chr3_2:21652586-21652605 None:intergenic 60.0%
!! AATGGTGGTGGTGGTGGTGG+TGG - chr3_2:21652811-21652830 Msa0399180:intron 60.0%
!! ATGGTGGTGGTGGTGGTGGT+GGG - chr3_2:21652812-21652831 Msa0399180:intron 60.0%
CCTATGCAGGGTCTGGGAAG+GGG + chr3_2:21652964-21652983 Msa0399190:CDS 60.0%
GCCTATGCAGGGTCTGGGAA+GGG + chr3_2:21652965-21652984 Msa0399190:CDS 60.0%
CTTCCCAGACCCTGCATAGG+CGG - chr3_2:21652964-21652983 Msa0399180:intron 60.0%
TTCCCAGACCCTGCATAGGC+GGG - chr3_2:21652965-21652984 Msa0399180:intron 60.0%
CACAAAGCTCCCGCCTATGC+AGG + chr3_2:21652977-21652996 Msa0399190:CDS 60.0%
! TAGGCGGGAGCTTTGTGCAC+CGG - chr3_2:21652980-21652999 Msa0399180:intron 60.0%
CAAATGCGGATTCCTCGGCC+TGG + chr3_2:21653694-21653713 None:intergenic 60.0%
ATCTGGTCCGTCCCTCCGTT+TGG - chr3_2:21654296-21654315 Msa0399180:intron 60.0%
!! TGGTGGTGGTGGTGGTGGGT+GGG - chr3_2:21652816-21652835 Msa0399180:intron 65.0%
TGGGAAGGGGTCCCGCCATT+TGG + chr3_2:21652951-21652970 Msa0399190:CDS 65.0%
CCCCTTCCCAGACCCTGCAT+AGG - chr3_2:21652961-21652980 Msa0399180:intron 65.0%
CGCCTATGCAGGGTCTGGGA+AGG + chr3_2:21652966-21652985 Msa0399190:CDS 65.0%
CTCCCGCCTATGCAGGGTCT+GGG + chr3_2:21652970-21652989 Msa0399190:CDS 65.0%
! AGGCGGGAGCTTTGTGCACC+GGG - chr3_2:21652981-21653000 Msa0399180:intron 65.0%
AGGTTTGCCAGTCCAGGCCG+AGG - chr3_2:21653679-21653698 Msa0399180:intron 65.0%
!! GTGGTGGTGGTGGTGGTGGG+TGG - chr3_2:21652815-21652834 Msa0399180:intron 70.0%
!! GGTGGTGGTGGTGGTGGGTG+GGG - chr3_2:21652817-21652836 Msa0399180:intron 70.0%
!! GTGGTGGTGGTGGTGGGTGG+GGG - chr3_2:21652818-21652837 Msa0399180:intron 70.0%
!! TGGTGGTGGTGGTGGGTGGG+GGG - chr3_2:21652819-21652838 Msa0399180:intron 70.0%
GCTCCCGCCTATGCAGGGTC+TGG + chr3_2:21652971-21652990 Msa0399190:CDS 70.0%
GCGGATTCCTCGGCCTGGAC+TGG + chr3_2:21653689-21653708 None:intergenic 70.0%
!! GGTGGTGGTGGTGGGTGGGG+GGG - chr3_2:21652820-21652839 Msa0399180:intron 75.0%
!! GTGGTGGTGGTGGGTGGGGG+GGG - chr3_2:21652821-21652840 Msa0399180:intron 75.0%
!! GGTGGTGGGTGGGGGGGGAT+TGG - chr3_2:21652826-21652845 Msa0399180:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 21649815 21655171 21649815 ID=Msa0399180;Name=Msa0399180
chr3_2 mRNA 21649815 21655171 21649815 ID=Msa0399180-mRNA-1;Parent=Msa0399180;Name=Msa0399180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=115|1|1|1|0.75|0.6|5|350|233
chr3_2 exon 21649815 21650203 21649815 ID=Msa0399180-mRNA-1:exon:4713;Parent=Msa0399180-mRNA-1
chr3_2 exon 21651067 21651363 21651067 ID=Msa0399180-mRNA-1:exon:4712;Parent=Msa0399180-mRNA-1
chr3_2 exon 21651474 21651575 21651474 ID=Msa0399180-mRNA-1:exon:4711;Parent=Msa0399180-mRNA-1
chr3_2 exon 21654764 21655112 21654764 ID=Msa0399180-mRNA-1:exon:4710;Parent=Msa0399180-mRNA-1
chr3_2 exon 21655142 21655171 21655142 ID=Msa0399180-mRNA-1:exon:4709;Parent=Msa0399180-mRNA-1
chr3_2 five_prime_UTR 21655142 21655171 21655142 ID=Msa0399180-mRNA-1:five_prime_utr;Parent=Msa0399180-mRNA-1
chr3_2 five_prime_UTR 21655028 21655112 21655028 ID=Msa0399180-mRNA-1:five_prime_utr;Parent=Msa0399180-mRNA-1
chr3_2 CDS 21654764 21655027 21654764 ID=Msa0399180-mRNA-1:cds;Parent=Msa0399180-mRNA-1
chr3_2 CDS 21651474 21651575 21651474 ID=Msa0399180-mRNA-1:cds;Parent=Msa0399180-mRNA-1
chr3_2 CDS 21651067 21651363 21651067 ID=Msa0399180-mRNA-1:cds;Parent=Msa0399180-mRNA-1
chr3_2 CDS 21650165 21650203 21650165 ID=Msa0399180-mRNA-1:cds;Parent=Msa0399180-mRNA-1
chr3_2 three_prime_UTR 21649815 21650164 21649815 ID=Msa0399180-mRNA-1:three_prime_utr;Parent=Msa0399180-mRNA-1
Gene Sequence

>Msa0399180

ATGGCTTCTCTACTCTCACACTCGAATTTCCTTTCCCTAACTCACAACACAAACTTAACCTTAAAACCCAAAACGACAACAACACCTTCTTCCCTTGTCGTTACAACACGTCGTTTTAGAAAACACTTTGTTGTTTCTTCTGAACAAGCTACGGTTGATTCTCCTGCTGTTAGAAAGCTTTACGTTGGTAACATTCCTCGTACTGTTAGTAATGACGAACTTGCCAAGATTGTTCAAGAACATGGTGCTGTTGAAAAAGCTGAGGTTATGTATGACAAATACTCTAAAAGGAGTCGTCGCTTTGCATTTGTTACAATGAAAACCGTTGAGGATGCAAACGCAGCAGCTGAGAAACTCAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTGAATATAACCGAAAAACCTTTAATAACAGGAGGTTTGCCAGTCCAGGCCGAGGAATCCGCATTTGTAGACAGTCCTTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACATCTGATAGCCTTAAAAATTTCTTCTCGGAAAAAGCAAATGCTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAATCCAGTGGTTTCGGCTTTGTTACTTTTTCATCAGACGAGGATGTAGAAGCTGCTATCTCATCTTTCAACAATGCTTTGTTAGAAGGGCAGAAAATCCGAGTGAATAAGGCGTAG
Protein sequence

>Msa0399180

MASLLSHSNFLSLTHNTNLTLKPKTTTTPSSLVVTTRRFRKHFVVSSEQATVDSPAVRKLYVGNIPRTVSNDELAKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKLNGTQIGGREIKVNITEKPLITGGLPVQAEESAFVDSPYKVYVGNLAKNVTSDSLKNFFSEKANALSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA*