AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0620130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620130 MtrunA17_Chr8g0385881 96.403 139 5 0 1 139 1 139 3.36e-94 268
Msa0620130 MtrunA17_Chr2g0286471 46.853 143 66 4 1 138 1 138 1.60e-36 122
Msa0620130 MtrunA17_Chr2g0286481 50.407 123 53 4 22 138 18 138 1.36e-32 112
Msa0620130 MtrunA17_Chr1g0191251 50.000 80 35 2 56 133 10 86 5.17e-18 73.6
Msa0620130 MtrunA17_Chr7g0249801 43.182 88 47 3 45 131 27 112 7.68e-12 58.5
Msa0620130 MtrunA17_Chr7g0249561 41.772 79 44 2 61 138 53 130 3.43e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620130 AT4G25050.1 56.522 138 53 3 1 138 1 131 1.63e-39 130
Msa0620130 AT4G25050.2 52.000 150 53 4 1 138 1 143 7.32e-36 121
Msa0620130 AT3G05020.1 50.735 136 51 4 4 138 16 136 3.19e-35 119
Msa0620130 AT5G27200.1 63.529 85 29 1 54 138 55 137 1.92e-31 109
Msa0620130 AT1G54630.1 43.262 141 70 3 1 138 1 134 2.84e-28 101
Msa0620130 AT1G54580.1 47.244 127 58 4 17 138 12 134 6.08e-27 98.2
Msa0620130 AT1G65290.1 41.772 79 44 2 61 138 49 126 1.56e-11 58.2
Msa0620130 AT1G54630.2 53.448 58 25 1 54 111 52 107 2.59e-11 57.0

Find 60 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAACAAAATTGGCTTATTA+TGG 0.153308 4_2:-71421088 None:intergenic
CACCATGTACCTATATTCTA+TGG 0.216034 4_2:-71423086 None:intergenic
AGTTCTGAAAATTTAGTTTC+TGG 0.232292 4_2:-71422282 None:intergenic
TCTGGGGTAAGCTTGGTTTC+AGG 0.264840 4_2:-71422264 None:intergenic
CATTATCATCCTCAATATTA+AGG 0.281641 4_2:-71422615 None:intergenic
AATACATTGTGAACTGAGTT+AGG 0.285621 4_2:+71422742 Msa0620130:three_prime_UTR
TGTGCTTATGCGTATTCTTT+TGG 0.292912 4_2:+71422801 Msa0620130:three_prime_UTR
CTCACTTTCTCCACTGTCTC+AGG 0.295443 4_2:-71422210 None:intergenic
TCTTTCAGAACTTCAAGTTT+TGG 0.316075 4_2:+71422021 Msa0620130:CDS
GAACAAAATTGGCTTATTAT+GGG 0.351569 4_2:-71421087 None:intergenic
AAAGAAAGATTAAGCTTAAG+AGG 0.355256 4_2:+71422693 Msa0620130:exon
GTTCTGAAAATTTAGTTTCT+GGG 0.362213 4_2:-71422281 None:intergenic
AGATAGAATAGTAAGAGATA+TGG 0.363474 4_2:-71421201 None:intergenic
AGGCCATTGTATTGAAGCTT+AGG 0.372070 4_2:-71421228 None:intergenic
GGAAATAGTGATGGGTTTAG+AGG 0.377032 4_2:+71422582 Msa0620130:CDS
TTAAAGATCCCATAGAATAT+AGG 0.386492 4_2:+71423077 Msa0620130:three_prime_UTR
AGCCATGTCAGGAACAAAAT+TGG 0.386576 4_2:-71421098 None:intergenic
TATGGATTGGGTTGATTAAA+CGG 0.393089 4_2:-71421183 None:intergenic
TTATCTAGCTGGTGCTTAGT+TGG 0.422462 4_2:-71421128 None:intergenic
GAATAGTAAGAGATATGGAT+TGG 0.457105 4_2:-71421196 None:intergenic
TTTAGTTTCTGGGGTAAGCT+TGG 0.464049 4_2:-71422271 None:intergenic
ATGGAACATTGCCATAATCT+TGG 0.469205 4_2:-71422959 None:intergenic
TACGCATAAGCACAAATAAG+AGG 0.474753 4_2:-71422792 None:intergenic
CAAATCAGCTGCTTGTTGAA+TGG 0.477053 4_2:-71422653 None:intergenic
CCTCTTTCAATTTCTCTACA+AGG 0.482096 4_2:+71421281 Msa0620130:CDS
TGTCTGTTAAAAGAAGTAAG+AGG 0.500233 4_2:+71423107 Msa0620130:three_prime_UTR
TTGGAAAGTAAAGCCATGTC+AGG 0.506514 4_2:-71421109 None:intergenic
CAAACTTACTGCACAAATGC+GGG 0.509110 4_2:-71422100 None:intergenic
AGAGTTTAACCTTAATATTG+AGG 0.511328 4_2:+71422606 Msa0620130:CDS
AGATAAGTGTGTTATCTAGC+TGG 0.511891 4_2:-71421139 None:intergenic
GAAATTGAAAGAGGGTTGAA+AGG 0.517599 4_2:-71421272 None:intergenic
GTCTGTTAAAAGAAGTAAGA+GGG 0.523998 4_2:+71423108 Msa0620130:three_prime_UTR
TTTCCGTAGAGCTTTCCATT+GGG 0.525709 4_2:-71422720 None:intergenic
TTCTGAAAATTTAGTTTCTG+GGG 0.526211 4_2:-71422280 None:intergenic
CCTTGTAGAGAAATTGAAAG+AGG 0.526756 4_2:-71421281 None:intergenic
AACAAAATTGGCTTATTATG+GGG 0.535892 4_2:-71421086 None:intergenic
AATAGTAAGAGATATGGATT+GGG 0.536153 4_2:-71421195 None:intergenic
AGAGGGTTGAAAGGTAAGAG+AGG 0.538850 4_2:-71421263 None:intergenic
AAGAGAGGTGGTTGAAAGAG+AGG 0.539433 4_2:-71421248 None:intergenic
ATACATTGTGAACTGAGTTA+GGG 0.539752 4_2:+71422743 Msa0620130:three_prime_UTR
GCAATTTAACCAAGTTACAA+TGG 0.553844 4_2:-71422848 None:intergenic
TTCCATCCTTGTGCCTAATG+TGG 0.559732 4_2:+71422976 Msa0620130:three_prime_UTR
ATTGCTATTTGTTGCAAGCA+TGG 0.559888 4_2:+71422866 Msa0620130:three_prime_UTR
TCGTAATTAGAGTTCGATAC+GGG 0.561650 4_2:-71423136 None:intergenic
GAACGAGAAGATCTCAAAGA+AGG 0.566334 4_2:-71422078 None:intergenic
CTTCCTAAGCTTCAATACAA+TGG 0.568743 4_2:+71421225 Msa0620130:exon
GGGTTGAAAGGTAAGAGAGG+TGG 0.569945 4_2:-71421260 None:intergenic
GTGGCAGGTGGAAATAGTGA+TGG 0.572304 4_2:+71422573 Msa0620130:intron
GTCGTAATTAGAGTTCGATA+CGG 0.574024 4_2:-71423137 None:intergenic
GAACCCAATGGAAAGCTCTA+CGG 0.580944 4_2:+71422717 Msa0620130:three_prime_UTR
AACCACATTAGGCACAAGGA+TGG 0.581015 4_2:-71422978 None:intergenic
CTTGTAGAGAAATTGAAAGA+GGG 0.583035 4_2:-71421280 None:intergenic
TCAGGCACAACCTGAGACAG+TGG 0.583358 4_2:+71422200 Msa0620130:CDS
TCCCATAGAATATAGGTACA+TGG 0.589312 4_2:+71423084 Msa0620130:three_prime_UTR
ACCATGTACCTATATTCTAT+GGG 0.590623 4_2:-71423085 None:intergenic
AGCTTAAGAGGTGAACCCAA+TGG 0.601174 4_2:+71422705 Msa0620130:exon
TTTCTCTACAAGGACTAACC+AGG 0.601936 4_2:+71421291 Msa0620130:CDS
TCAAACTTACTGCACAAATG+CGG 0.607296 4_2:-71422101 None:intergenic
TGGCAGGTGGAAATAGTGAT+GGG 0.642802 4_2:+71422574 Msa0620130:intron
TGTTAAAAGAAGTAAGAGGG+AGG 0.674679 4_2:+71423111 Msa0620130:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTAAAAGATTC+AGG + chr4_2:71422182-71422201 Msa0620130:intron 10.0%
!!! AATTTTTTTTTAAAAGATTC+AGG + chr4_2:71422182-71422201 Msa0620130:intron 10.0%
!!! GTTTTAATACTTTTTTTATG+AGG + chr4_2:71421946-71421965 Msa0620130:intron 15.0%
!!! ATCATCAGTAAATTTATTTT+TGG + chr4_2:71422769-71422788 Msa0620130:three_prime_UTR 15.0%
!!! GTTTTAATACTTTTTTTATG+AGG + chr4_2:71421946-71421965 Msa0620130:intron 15.0%
!!! ATCATCAGTAAATTTATTTT+TGG + chr4_2:71422769-71422788 Msa0620130:three_prime_UTR 15.0%
!! ATTTGTATTTACACTTCAAT+AGG + chr4_2:71421362-71421381 Msa0620130:intron 20.0%
!! ACATACACATTAATATGTTA+AGG + chr4_2:71421728-71421747 Msa0620130:intron 20.0%
!!! ACATTAATATGTTAAGGTTT+TGG + chr4_2:71421734-71421753 Msa0620130:intron 20.0%
!!! TGTTTTGTTGTTTTTCTATT+TGG + chr4_2:71421786-71421805 Msa0620130:intron 20.0%
!! ATAAACAACAATTATCGTAT+AGG + chr4_2:71421809-71421828 Msa0620130:intron 20.0%
!! TGAAAATAACTTATGAACAA+CGG + chr4_2:71421924-71421943 Msa0620130:intron 20.0%
!!! AGTGAAAATTTTAATTTGAG+TGG + chr4_2:71421978-71421997 Msa0620130:intron 20.0%
!! AAGTCAAAATGAATTTCAAA+GGG - chr4_2:71422129-71422148 None:intergenic 20.0%
!! AAAGTCAAAATGAATTTCAA+AGG - chr4_2:71422130-71422149 None:intergenic 20.0%
!!! ATTATTGGTTTTGATTTTGA+TGG + chr4_2:71422453-71422472 Msa0620130:intron 20.0%
!!! TGATTGATTCTTAATTAATG+TGG + chr4_2:71422554-71422573 Msa0620130:intron 20.0%
!!! TTTTTTTTTCCATTGTAACT+TGG + chr4_2:71422839-71422858 Msa0620130:three_prime_UTR 20.0%
!! ATTTGTATTTACACTTCAAT+AGG + chr4_2:71421362-71421381 Msa0620130:intron 20.0%
!! ACATACACATTAATATGTTA+AGG + chr4_2:71421728-71421747 Msa0620130:intron 20.0%
!!! ACATTAATATGTTAAGGTTT+TGG + chr4_2:71421734-71421753 Msa0620130:intron 20.0%
!!! TGTTTTGTTGTTTTTCTATT+TGG + chr4_2:71421786-71421805 Msa0620130:intron 20.0%
!! ATAAACAACAATTATCGTAT+AGG + chr4_2:71421809-71421828 Msa0620130:intron 20.0%
!! TGAAAATAACTTATGAACAA+CGG + chr4_2:71421924-71421943 Msa0620130:intron 20.0%
!!! AGTGAAAATTTTAATTTGAG+TGG + chr4_2:71421978-71421997 Msa0620130:intron 20.0%
!! AAGTCAAAATGAATTTCAAA+GGG - chr4_2:71422129-71422148 None:intergenic 20.0%
!! AAAGTCAAAATGAATTTCAA+AGG - chr4_2:71422130-71422149 None:intergenic 20.0%
!!! ATTATTGGTTTTGATTTTGA+TGG + chr4_2:71422453-71422472 Msa0620130:intron 20.0%
!!! TGATTGATTCTTAATTAATG+TGG + chr4_2:71422554-71422573 Msa0620130:intron 20.0%
!!! TTTTTTTTTCCATTGTAACT+TGG + chr4_2:71422839-71422858 Msa0620130:three_prime_UTR 20.0%
!! AACAAAATTGGCTTATTATG+GGG - chr4_2:71421089-71421108 None:intergenic 25.0%
!! GAACAAAATTGGCTTATTAT+GGG - chr4_2:71421090-71421109 None:intergenic 25.0%
! AATAGTAAGAGATATGGATT+GGG - chr4_2:71421198-71421217 None:intergenic 25.0%
! AGATAGAATAGTAAGAGATA+TGG - chr4_2:71421204-71421223 None:intergenic 25.0%
! ATTTGACATTTGATATGTTG+TGG + chr4_2:71421407-71421426 Msa0620130:intron 25.0%
! AACATTGCATACAATAAATG+TGG - chr4_2:71421464-71421483 None:intergenic 25.0%
! ATTAAATGCATGAAATGACT+TGG + chr4_2:71421527-71421546 Msa0620130:intron 25.0%
!!! TCCAAAAGTGGTTTATTTTT+CGG - chr4_2:71421565-71421584 None:intergenic 25.0%
! TATAGAGAAATTTCCAAAAG+TGG - chr4_2:71421577-71421596 None:intergenic 25.0%
! AGTATATAGCATAGTTACAT+TGG + chr4_2:71421682-71421701 Msa0620130:intron 25.0%
!!! AATACTTTTTTTATGAGGTG+AGG + chr4_2:71421951-71421970 Msa0620130:intron 25.0%
!!! TGACTTTTAAAAAACTTGCA+AGG + chr4_2:71422143-71422162 Msa0620130:intron 25.0%
!! TTCTGAAAATTTAGTTTCTG+GGG - chr4_2:71422283-71422302 None:intergenic 25.0%
!!! GTTCTGAAAATTTAGTTTCT+GGG - chr4_2:71422284-71422303 None:intergenic 25.0%
!!! AGTTCTGAAAATTTAGTTTC+TGG - chr4_2:71422285-71422304 None:intergenic 25.0%
!! GAAACTAAATTTTCAGAACT+TGG + chr4_2:71422285-71422304 Msa0620130:CDS 25.0%
! AAAAAAATATTGTACTCCGT+TGG + chr4_2:71422386-71422405 Msa0620130:intron 25.0%
! AAAACCAATAATGTTCATTC+AGG - chr4_2:71422445-71422464 None:intergenic 25.0%
! AGAGTTTAACCTTAATATTG+AGG + chr4_2:71422606-71422625 Msa0620130:CDS 25.0%
! CATTATCATCCTCAATATTA+AGG - chr4_2:71422618-71422637 None:intergenic 25.0%
! AAAGAAAGATTAAGCTTAAG+AGG + chr4_2:71422693-71422712 Msa0620130:exon 25.0%
!!! AAGCATGTTATTTGCTTTTT+AGG + chr4_2:71422936-71422955 Msa0620130:three_prime_UTR 25.0%
!! AACTTTCTAAAAACCACATT+AGG - chr4_2:71422992-71423011 None:intergenic 25.0%
! TTAAAGATCCCATAGAATAT+AGG + chr4_2:71423077-71423096 Msa0620130:three_prime_UTR 25.0%
!! AACAAAATTGGCTTATTATG+GGG - chr4_2:71421089-71421108 None:intergenic 25.0%
!! GAACAAAATTGGCTTATTAT+GGG - chr4_2:71421090-71421109 None:intergenic 25.0%
! AATAGTAAGAGATATGGATT+GGG - chr4_2:71421198-71421217 None:intergenic 25.0%
! AGATAGAATAGTAAGAGATA+TGG - chr4_2:71421204-71421223 None:intergenic 25.0%
! ATTTGACATTTGATATGTTG+TGG + chr4_2:71421407-71421426 Msa0620130:intron 25.0%
! AACATTGCATACAATAAATG+TGG - chr4_2:71421464-71421483 None:intergenic 25.0%
! ATTAAATGCATGAAATGACT+TGG + chr4_2:71421527-71421546 Msa0620130:intron 25.0%
!!! TCCAAAAGTGGTTTATTTTT+CGG - chr4_2:71421565-71421584 None:intergenic 25.0%
! TATAGAGAAATTTCCAAAAG+TGG - chr4_2:71421577-71421596 None:intergenic 25.0%
! AGTATATAGCATAGTTACAT+TGG + chr4_2:71421682-71421701 Msa0620130:intron 25.0%
!!! AATACTTTTTTTATGAGGTG+AGG + chr4_2:71421951-71421970 Msa0620130:intron 25.0%
!!! TGACTTTTAAAAAACTTGCA+AGG + chr4_2:71422143-71422162 Msa0620130:intron 25.0%
!! TTCTGAAAATTTAGTTTCTG+GGG - chr4_2:71422283-71422302 None:intergenic 25.0%
!!! GTTCTGAAAATTTAGTTTCT+GGG - chr4_2:71422284-71422303 None:intergenic 25.0%
!!! AGTTCTGAAAATTTAGTTTC+TGG - chr4_2:71422285-71422304 None:intergenic 25.0%
!! GAAACTAAATTTTCAGAACT+TGG + chr4_2:71422285-71422304 Msa0620130:CDS 25.0%
! AAAAAAATATTGTACTCCGT+TGG + chr4_2:71422386-71422405 Msa0620130:intron 25.0%
! AAAACCAATAATGTTCATTC+AGG - chr4_2:71422445-71422464 None:intergenic 25.0%
! AGAGTTTAACCTTAATATTG+AGG + chr4_2:71422606-71422625 Msa0620130:CDS 25.0%
! CATTATCATCCTCAATATTA+AGG - chr4_2:71422618-71422637 None:intergenic 25.0%
! AAAGAAAGATTAAGCTTAAG+AGG + chr4_2:71422693-71422712 Msa0620130:exon 25.0%
!!! AAGCATGTTATTTGCTTTTT+AGG + chr4_2:71422936-71422955 Msa0620130:three_prime_UTR 25.0%
!! AACTTTCTAAAAACCACATT+AGG - chr4_2:71422992-71423011 None:intergenic 25.0%
! TTAAAGATCCCATAGAATAT+AGG + chr4_2:71423077-71423096 Msa0620130:three_prime_UTR 25.0%
! GGAACAAAATTGGCTTATTA+TGG - chr4_2:71421091-71421110 None:intergenic 30.0%
!! TATGGATTGGGTTGATTAAA+CGG - chr4_2:71421186-71421205 None:intergenic 30.0%
GAATAGTAAGAGATATGGAT+TGG - chr4_2:71421199-71421218 None:intergenic 30.0%
CTTGTAGAGAAATTGAAAGA+GGG - chr4_2:71421283-71421302 None:intergenic 30.0%
GTAAGTATATGCATTAAGAG+TGG - chr4_2:71421333-71421352 None:intergenic 30.0%
!!! AATGTTACTATGCTAGCTTT+TGG + chr4_2:71421497-71421516 Msa0620130:intron 30.0%
! TCCGAAAAATAAACCACTTT+TGG + chr4_2:71421561-71421580 Msa0620130:intron 30.0%
! GAGTGTCCAATTGATAATTT+AGG + chr4_2:71421646-71421665 Msa0620130:intron 30.0%
CCAACACCTAAATTATCAAT+TGG - chr4_2:71421655-71421674 None:intergenic 30.0%
! CCAATTGATAATTTAGGTGT+TGG + chr4_2:71421652-71421671 Msa0620130:intron 30.0%
TATAGCATAGTTACATTGGT+AGG + chr4_2:71421686-71421705 Msa0620130:intron 30.0%
!! TCTTTCAGAACTTCAAGTTT+TGG + chr4_2:71422021-71422040 Msa0620130:CDS 30.0%
!!! TTTGATTTTGATGGTGCATT+TGG + chr4_2:71422462-71422481 Msa0620130:intron 30.0%
TGATTCTTAATTAATGTGGC+AGG + chr4_2:71422558-71422577 Msa0620130:intron 30.0%
AATACATTGTGAACTGAGTT+AGG + chr4_2:71422742-71422761 Msa0620130:three_prime_UTR 30.0%
ATACATTGTGAACTGAGTTA+GGG + chr4_2:71422743-71422762 Msa0620130:three_prime_UTR 30.0%
GCAATTTAACCAAGTTACAA+TGG - chr4_2:71422851-71422870 None:intergenic 30.0%
ACCATGTACCTATATTCTAT+GGG - chr4_2:71423088-71423107 None:intergenic 30.0%
TGTCTGTTAAAAGAAGTAAG+AGG + chr4_2:71423107-71423126 Msa0620130:three_prime_UTR 30.0%
GTCTGTTAAAAGAAGTAAGA+GGG + chr4_2:71423108-71423127 Msa0620130:three_prime_UTR 30.0%
! GGAACAAAATTGGCTTATTA+TGG - chr4_2:71421091-71421110 None:intergenic 30.0%
!! TATGGATTGGGTTGATTAAA+CGG - chr4_2:71421186-71421205 None:intergenic 30.0%
GAATAGTAAGAGATATGGAT+TGG - chr4_2:71421199-71421218 None:intergenic 30.0%
CTTGTAGAGAAATTGAAAGA+GGG - chr4_2:71421283-71421302 None:intergenic 30.0%
GTAAGTATATGCATTAAGAG+TGG - chr4_2:71421333-71421352 None:intergenic 30.0%
!!! AATGTTACTATGCTAGCTTT+TGG + chr4_2:71421497-71421516 Msa0620130:intron 30.0%
! TCCGAAAAATAAACCACTTT+TGG + chr4_2:71421561-71421580 Msa0620130:intron 30.0%
! GAGTGTCCAATTGATAATTT+AGG + chr4_2:71421646-71421665 Msa0620130:intron 30.0%
CCAACACCTAAATTATCAAT+TGG - chr4_2:71421655-71421674 None:intergenic 30.0%
! CCAATTGATAATTTAGGTGT+TGG + chr4_2:71421652-71421671 Msa0620130:intron 30.0%
TATAGCATAGTTACATTGGT+AGG + chr4_2:71421686-71421705 Msa0620130:intron 30.0%
!! TCTTTCAGAACTTCAAGTTT+TGG + chr4_2:71422021-71422040 Msa0620130:CDS 30.0%
!!! TTTGATTTTGATGGTGCATT+TGG + chr4_2:71422462-71422481 Msa0620130:intron 30.0%
TGATTCTTAATTAATGTGGC+AGG + chr4_2:71422558-71422577 Msa0620130:intron 30.0%
AATACATTGTGAACTGAGTT+AGG + chr4_2:71422742-71422761 Msa0620130:three_prime_UTR 30.0%
ATACATTGTGAACTGAGTTA+GGG + chr4_2:71422743-71422762 Msa0620130:three_prime_UTR 30.0%
GCAATTTAACCAAGTTACAA+TGG - chr4_2:71422851-71422870 None:intergenic 30.0%
ACCATGTACCTATATTCTAT+GGG - chr4_2:71423088-71423107 None:intergenic 30.0%
TGTCTGTTAAAAGAAGTAAG+AGG + chr4_2:71423107-71423126 Msa0620130:three_prime_UTR 30.0%
GTCTGTTAAAAGAAGTAAGA+GGG + chr4_2:71423108-71423127 Msa0620130:three_prime_UTR 30.0%
AGATAAGTGTGTTATCTAGC+TGG - chr4_2:71421142-71421161 None:intergenic 35.0%
CTTCCTAAGCTTCAATACAA+TGG + chr4_2:71421225-71421244 Msa0620130:exon 35.0%
GAAATTGAAAGAGGGTTGAA+AGG - chr4_2:71421275-71421294 None:intergenic 35.0%
CCTTGTAGAGAAATTGAAAG+AGG - chr4_2:71421284-71421303 None:intergenic 35.0%
CCTCTTTCAATTTCTCTACA+AGG + chr4_2:71421281-71421300 Msa0620130:CDS 35.0%
AGTGGTTAAAACATACATGC+AGG + chr4_2:71421996-71422015 Msa0620130:intron 35.0%
!! AAGTTTTGGTGCAATTTCTG+TGG + chr4_2:71422035-71422054 Msa0620130:CDS 35.0%
!! AGTTTTGGTGCAATTTCTGT+GGG + chr4_2:71422036-71422055 Msa0620130:CDS 35.0%
TCAAACTTACTGCACAAATG+CGG - chr4_2:71422104-71422123 None:intergenic 35.0%
! ATTGTACTCCGTTGGTTATA+AGG + chr4_2:71422394-71422413 Msa0620130:intron 35.0%
GAACTTGACCTTATAACCAA+CGG - chr4_2:71422405-71422424 None:intergenic 35.0%
GACACCTGAATGAACATTAT+TGG + chr4_2:71422438-71422457 Msa0620130:intron 35.0%
! TGTTGTTTATGCTAGAGCTA+TGG + chr4_2:71422519-71422538 Msa0620130:intron 35.0%
GTTGTTTATGCTAGAGCTAT+GGG + chr4_2:71422520-71422539 Msa0620130:intron 35.0%
TTCTTAATTAATGTGGCAGG+TGG + chr4_2:71422561-71422580 Msa0620130:intron 35.0%
TACGCATAAGCACAAATAAG+AGG - chr4_2:71422795-71422814 None:intergenic 35.0%
! TGTGCTTATGCGTATTCTTT+TGG + chr4_2:71422801-71422820 Msa0620130:three_prime_UTR 35.0%
! CTTATGCGTATTCTTTTGGA+AGG + chr4_2:71422805-71422824 Msa0620130:three_prime_UTR 35.0%
!! ATTGCTATTTGTTGCAAGCA+TGG + chr4_2:71422866-71422885 Msa0620130:three_prime_UTR 35.0%
!! TGCTTTTTAGGCCAAGATTA+TGG + chr4_2:71422948-71422967 Msa0620130:three_prime_UTR 35.0%
ATGGAACATTGCCATAATCT+TGG - chr4_2:71422962-71422981 None:intergenic 35.0%
TAAAAACCACATTAGGCACA+AGG - chr4_2:71422985-71423004 None:intergenic 35.0%
TCCCATAGAATATAGGTACA+TGG + chr4_2:71423084-71423103 Msa0620130:three_prime_UTR 35.0%
CACCATGTACCTATATTCTA+TGG - chr4_2:71423089-71423108 None:intergenic 35.0%
TGTTAAAAGAAGTAAGAGGG+AGG + chr4_2:71423111-71423130 Msa0620130:three_prime_UTR 35.0%
TCGTAATTAGAGTTCGATAC+GGG - chr4_2:71423139-71423158 None:intergenic 35.0%
GTCGTAATTAGAGTTCGATA+CGG - chr4_2:71423140-71423159 None:intergenic 35.0%
AGATAAGTGTGTTATCTAGC+TGG - chr4_2:71421142-71421161 None:intergenic 35.0%
CTTCCTAAGCTTCAATACAA+TGG + chr4_2:71421225-71421244 Msa0620130:exon 35.0%
GAAATTGAAAGAGGGTTGAA+AGG - chr4_2:71421275-71421294 None:intergenic 35.0%
CCTTGTAGAGAAATTGAAAG+AGG - chr4_2:71421284-71421303 None:intergenic 35.0%
CCTCTTTCAATTTCTCTACA+AGG + chr4_2:71421281-71421300 Msa0620130:CDS 35.0%
AGTGGTTAAAACATACATGC+AGG + chr4_2:71421996-71422015 Msa0620130:intron 35.0%
!! AAGTTTTGGTGCAATTTCTG+TGG + chr4_2:71422035-71422054 Msa0620130:CDS 35.0%
!! AGTTTTGGTGCAATTTCTGT+GGG + chr4_2:71422036-71422055 Msa0620130:CDS 35.0%
TCAAACTTACTGCACAAATG+CGG - chr4_2:71422104-71422123 None:intergenic 35.0%
! ATTGTACTCCGTTGGTTATA+AGG + chr4_2:71422394-71422413 Msa0620130:intron 35.0%
GAACTTGACCTTATAACCAA+CGG - chr4_2:71422405-71422424 None:intergenic 35.0%
GACACCTGAATGAACATTAT+TGG + chr4_2:71422438-71422457 Msa0620130:intron 35.0%
! TGTTGTTTATGCTAGAGCTA+TGG + chr4_2:71422519-71422538 Msa0620130:intron 35.0%
GTTGTTTATGCTAGAGCTAT+GGG + chr4_2:71422520-71422539 Msa0620130:intron 35.0%
TTCTTAATTAATGTGGCAGG+TGG + chr4_2:71422561-71422580 Msa0620130:intron 35.0%
TACGCATAAGCACAAATAAG+AGG - chr4_2:71422795-71422814 None:intergenic 35.0%
! TGTGCTTATGCGTATTCTTT+TGG + chr4_2:71422801-71422820 Msa0620130:three_prime_UTR 35.0%
! CTTATGCGTATTCTTTTGGA+AGG + chr4_2:71422805-71422824 Msa0620130:three_prime_UTR 35.0%
!! ATTGCTATTTGTTGCAAGCA+TGG + chr4_2:71422866-71422885 Msa0620130:three_prime_UTR 35.0%
!! TGCTTTTTAGGCCAAGATTA+TGG + chr4_2:71422948-71422967 Msa0620130:three_prime_UTR 35.0%
ATGGAACATTGCCATAATCT+TGG - chr4_2:71422962-71422981 None:intergenic 35.0%
TAAAAACCACATTAGGCACA+AGG - chr4_2:71422985-71423004 None:intergenic 35.0%
TCCCATAGAATATAGGTACA+TGG + chr4_2:71423084-71423103 Msa0620130:three_prime_UTR 35.0%
CACCATGTACCTATATTCTA+TGG - chr4_2:71423089-71423108 None:intergenic 35.0%
TGTTAAAAGAAGTAAGAGGG+AGG + chr4_2:71423111-71423130 Msa0620130:three_prime_UTR 35.0%
TCGTAATTAGAGTTCGATAC+GGG - chr4_2:71423139-71423158 None:intergenic 35.0%
GTCGTAATTAGAGTTCGATA+CGG - chr4_2:71423140-71423159 None:intergenic 35.0%
! AGCCAATTTTGTTCCTGACA+TGG + chr4_2:71421096-71421115 Msa0620130:five_prime_UTR 40.0%
AGCCATGTCAGGAACAAAAT+TGG - chr4_2:71421101-71421120 None:intergenic 40.0%
TTGGAAAGTAAAGCCATGTC+AGG - chr4_2:71421112-71421131 None:intergenic 40.0%
TTATCTAGCTGGTGCTTAGT+TGG - chr4_2:71421131-71421150 None:intergenic 40.0%
CGGTAGTAGTAGTAGTAGTA+GGG - chr4_2:71421166-71421185 None:intergenic 40.0%
ACGGTAGTAGTAGTAGTAGT+AGG - chr4_2:71421167-71421186 None:intergenic 40.0%
AGGCCATTGTATTGAAGCTT+AGG - chr4_2:71421231-71421250 None:intergenic 40.0%
TTTCTCTACAAGGACTAACC+AGG + chr4_2:71421291-71421310 Msa0620130:CDS 40.0%
GGAAGATGAAAATCTGAACC+TGG - chr4_2:71421312-71421331 None:intergenic 40.0%
ACACGTGCAAATTAAACGCA+CGG + chr4_2:71421615-71421634 Msa0620130:intron 40.0%
GAACGAGAAGATCTCAAAGA+AGG - chr4_2:71422081-71422100 None:intergenic 40.0%
CAAACTTACTGCACAAATGC+GGG - chr4_2:71422103-71422122 None:intergenic 40.0%
!! TTTAGTTTCTGGGGTAAGCT+TGG - chr4_2:71422274-71422293 None:intergenic 40.0%
!! GGAAATAGTGATGGGTTTAG+AGG + chr4_2:71422582-71422601 Msa0620130:CDS 40.0%
! CAAATCAGCTGCTTGTTGAA+TGG - chr4_2:71422656-71422675 None:intergenic 40.0%
TTTCCGTAGAGCTTTCCATT+GGG - chr4_2:71422723-71422742 None:intergenic 40.0%
! TTTTCCGTAGAGCTTTCCAT+TGG - chr4_2:71422724-71422743 None:intergenic 40.0%
AGCATACATAAGCCAGGTAA+GGG + chr4_2:71423026-71423045 Msa0620130:intron 40.0%
! ATTGGCTTATTATGGGGTGA+TGG - chr4_2:71421083-71421102 None:intergenic 40.0%
! AGCCAATTTTGTTCCTGACA+TGG + chr4_2:71421096-71421115 Msa0620130:five_prime_UTR 40.0%
AGCCATGTCAGGAACAAAAT+TGG - chr4_2:71421101-71421120 None:intergenic 40.0%
TTGGAAAGTAAAGCCATGTC+AGG - chr4_2:71421112-71421131 None:intergenic 40.0%
TTATCTAGCTGGTGCTTAGT+TGG - chr4_2:71421131-71421150 None:intergenic 40.0%
CGGTAGTAGTAGTAGTAGTA+GGG - chr4_2:71421166-71421185 None:intergenic 40.0%
ACGGTAGTAGTAGTAGTAGT+AGG - chr4_2:71421167-71421186 None:intergenic 40.0%
AGGCCATTGTATTGAAGCTT+AGG - chr4_2:71421231-71421250 None:intergenic 40.0%
TTTCTCTACAAGGACTAACC+AGG + chr4_2:71421291-71421310 Msa0620130:CDS 40.0%
GGAAGATGAAAATCTGAACC+TGG - chr4_2:71421312-71421331 None:intergenic 40.0%
ACACGTGCAAATTAAACGCA+CGG + chr4_2:71421615-71421634 Msa0620130:intron 40.0%
GAACGAGAAGATCTCAAAGA+AGG - chr4_2:71422081-71422100 None:intergenic 40.0%
CAAACTTACTGCACAAATGC+GGG - chr4_2:71422103-71422122 None:intergenic 40.0%
!! TTTAGTTTCTGGGGTAAGCT+TGG - chr4_2:71422274-71422293 None:intergenic 40.0%
!! GGAAATAGTGATGGGTTTAG+AGG + chr4_2:71422582-71422601 Msa0620130:CDS 40.0%
! CAAATCAGCTGCTTGTTGAA+TGG - chr4_2:71422656-71422675 None:intergenic 40.0%
TTTCCGTAGAGCTTTCCATT+GGG - chr4_2:71422723-71422742 None:intergenic 40.0%
! TTTTCCGTAGAGCTTTCCAT+TGG - chr4_2:71422724-71422743 None:intergenic 40.0%
AGCATACATAAGCCAGGTAA+GGG + chr4_2:71423026-71423045 Msa0620130:intron 40.0%
AAGAGAGGTGGTTGAAAGAG+AGG - chr4_2:71421251-71421270 None:intergenic 45.0%
AGAGGGTTGAAAGGTAAGAG+AGG - chr4_2:71421266-71421285 None:intergenic 45.0%
CATTTGATATGTTGTGGCGC+AGG + chr4_2:71421413-71421432 Msa0620130:intron 45.0%
AATTAAACGCACGGACGTGA+AGG + chr4_2:71421624-71421643 Msa0620130:intron 45.0%
TGGCAGGTGGAAATAGTGAT+GGG + chr4_2:71422574-71422593 Msa0620130:intron 45.0%
AGCTTAAGAGGTGAACCCAA+TGG + chr4_2:71422705-71422724 Msa0620130:exon 45.0%
GAACCCAATGGAAAGCTCTA+CGG + chr4_2:71422717-71422736 Msa0620130:three_prime_UTR 45.0%
TTCCATCCTTGTGCCTAATG+TGG + chr4_2:71422976-71422995 Msa0620130:three_prime_UTR 45.0%
AACCACATTAGGCACAAGGA+TGG - chr4_2:71422981-71423000 None:intergenic 45.0%
CCTGGCTTATGTATGCTCTT+TGG - chr4_2:71423023-71423042 None:intergenic 45.0%
! CCAAAGAGCATACATAAGCC+AGG + chr4_2:71423020-71423039 Msa0620130:intron 45.0%
GAGCATACATAAGCCAGGTA+AGG + chr4_2:71423025-71423044 Msa0620130:intron 45.0%
AAGAGAGGTGGTTGAAAGAG+AGG - chr4_2:71421251-71421270 None:intergenic 45.0%
AGAGGGTTGAAAGGTAAGAG+AGG - chr4_2:71421266-71421285 None:intergenic 45.0%
CATTTGATATGTTGTGGCGC+AGG + chr4_2:71421413-71421432 Msa0620130:intron 45.0%
AATTAAACGCACGGACGTGA+AGG + chr4_2:71421624-71421643 Msa0620130:intron 45.0%
TGGCAGGTGGAAATAGTGAT+GGG + chr4_2:71422574-71422593 Msa0620130:intron 45.0%
AGCTTAAGAGGTGAACCCAA+TGG + chr4_2:71422705-71422724 Msa0620130:exon 45.0%
GAACCCAATGGAAAGCTCTA+CGG + chr4_2:71422717-71422736 Msa0620130:three_prime_UTR 45.0%
TTCCATCCTTGTGCCTAATG+TGG + chr4_2:71422976-71422995 Msa0620130:three_prime_UTR 45.0%
AACCACATTAGGCACAAGGA+TGG - chr4_2:71422981-71423000 None:intergenic 45.0%
CCTGGCTTATGTATGCTCTT+TGG - chr4_2:71423023-71423042 None:intergenic 45.0%
! CCAAAGAGCATACATAAGCC+AGG + chr4_2:71423020-71423039 Msa0620130:intron 45.0%
GAGCATACATAAGCCAGGTA+AGG + chr4_2:71423025-71423044 Msa0620130:intron 45.0%
!!! TGTTTTATATATATATTTAT+TGG + chr4_2:71422899-71422918 Msa0620130:three_prime_UTR 5.0%
!!! TGTTTTATATATATATTTAT+TGG + chr4_2:71422899-71422918 Msa0620130:three_prime_UTR 5.0%
GGGTTGAAAGGTAAGAGAGG+TGG - chr4_2:71421263-71421282 None:intergenic 50.0%
CTCACTTTCTCCACTGTCTC+AGG - chr4_2:71422213-71422232 None:intergenic 50.0%
! TCTGGGGTAAGCTTGGTTTC+AGG - chr4_2:71422267-71422286 None:intergenic 50.0%
TCAGGTGTCAGCTCAGTGAT+AGG - chr4_2:71422427-71422446 None:intergenic 50.0%
GTGGCAGGTGGAAATAGTGA+TGG + chr4_2:71422573-71422592 Msa0620130:intron 50.0%
ACATAAGCCAGGTAAGGGTG+AGG + chr4_2:71423031-71423050 Msa0620130:intron 50.0%
TCAGTTACCTCACCCTTACC+TGG - chr4_2:71423041-71423060 None:intergenic 50.0%
GGGTTGAAAGGTAAGAGAGG+TGG - chr4_2:71421263-71421282 None:intergenic 50.0%
CTCACTTTCTCCACTGTCTC+AGG - chr4_2:71422213-71422232 None:intergenic 50.0%
! TCTGGGGTAAGCTTGGTTTC+AGG - chr4_2:71422267-71422286 None:intergenic 50.0%
TCAGGTGTCAGCTCAGTGAT+AGG - chr4_2:71422427-71422446 None:intergenic 50.0%
GTGGCAGGTGGAAATAGTGA+TGG + chr4_2:71422573-71422592 Msa0620130:intron 50.0%
ACATAAGCCAGGTAAGGGTG+AGG + chr4_2:71423031-71423050 Msa0620130:intron 50.0%
TCAGTTACCTCACCCTTACC+TGG - chr4_2:71423041-71423060 None:intergenic 50.0%
TCAGGCACAACCTGAGACAG+TGG + chr4_2:71422200-71422219 Msa0620130:CDS 55.0%
TCAGGCACAACCTGAGACAG+TGG + chr4_2:71422200-71422219 Msa0620130:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 71421081 71423159 71421081 ID=Msa0620130;Name=Msa0620130
chr4_2 mRNA 71421081 71423159 71421081 ID=Msa0620130-mRNA-1;Parent=Msa0620130;Name=Msa0620130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=163|1|1|1|0.5|0.4|5|392|139
chr4_2 exon 71421081 71421312 71421081 ID=Msa0620130-mRNA-1:exon:21119;Parent=Msa0620130-mRNA-1
chr4_2 exon 71422018 71422113 71422018 ID=Msa0620130-mRNA-1:exon:21120;Parent=Msa0620130-mRNA-1
chr4_2 exon 71422198 71422326 71422198 ID=Msa0620130-mRNA-1:exon:21121;Parent=Msa0620130-mRNA-1
chr4_2 exon 71422580 71423010 71422580 ID=Msa0620130-mRNA-1:exon:21122;Parent=Msa0620130-mRNA-1
chr4_2 exon 71423073 71423159 71423073 ID=Msa0620130-mRNA-1:exon:21123;Parent=Msa0620130-mRNA-1
chr4_2 five_prime_UTR 71421081 71421243 71421081 ID=Msa0620130-mRNA-1:five_prime_utr;Parent=Msa0620130-mRNA-1
chr4_2 CDS 71421244 71421312 71421244 ID=Msa0620130-mRNA-1:cds;Parent=Msa0620130-mRNA-1
chr4_2 CDS 71422018 71422113 71422018 ID=Msa0620130-mRNA-1:cds;Parent=Msa0620130-mRNA-1
chr4_2 CDS 71422198 71422326 71422198 ID=Msa0620130-mRNA-1:cds;Parent=Msa0620130-mRNA-1
chr4_2 CDS 71422580 71422705 71422580 ID=Msa0620130-mRNA-1:cds;Parent=Msa0620130-mRNA-1
chr4_2 three_prime_UTR 71422706 71423010 71422706 ID=Msa0620130-mRNA-1:three_prime_utr;Parent=Msa0620130-mRNA-1
chr4_2 three_prime_UTR 71423073 71423159 71423073 ID=Msa0620130-mRNA-1:three_prime_utr;Parent=Msa0620130-mRNA-1
Gene Sequence

>Msa0620130

ATGGCCTCTCTTTCAACCACCTCTCTTACCTTTCAACCCTCTTTCAATTTCTCTACAAGGACTAACCAGGTTTCTTTCAGAACTTCAAGTTTTGGTGCAATTTCTGTGGGATGTACAAAGAGAAGTTTTCCTTCTTTGAGATCTTCTCGTTCCCGCATTTGTGCAATTCAGGCACAACCTGAGACAGTGGAGAAAGTGAGCAAAATTGTGAGAAAACAACTTGCTTTGACTCCTGAAACCAAGCTTACCCCAGAAACTAAATTTTCAGAACTTGGTGCTGATTCTCTTGACACTGTGGAAATAGTGATGGGTTTAGAGGAAGAGTTTAACCTTAATATTGAGGATGATAATGCTGAAGACATCACAACCATTCAACAAGCAGCTGATTTGATAGAGAAACTGATTCAAAAGAAAGATTAA

Protein sequence

>Msa0620130

MASLSTTSLTFQPSFNFSTRTNQVSFRTSSFGAISVGCTKRSFPSLRSSRSRICAIQAQPETVEKVSKIVRKQLALTPETKLTPETKFSELGADSLDTVEIVMGLEEEFNLNIEDDNAEDITTIQQAADLIEKLIQKKD*