AlfalfaGEDB | Msa0706580

M. sativa cultivar zhongmu-4 / Msa0706580

KEGG: -
GO: GO:0000035 GO:0000036 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032501 GO:0032502 GO:0032787 GO:0033218 GO:0036094 GO:0042335 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0045087 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0048856 GO:0050896 GO:0051192 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0098542 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509
PFAM: PF00550.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706580	XP_003630571.1	97.122	139	4	0	1	139	1	139	2.25e-91	271

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706580	sp\|Q9SW21\|ACP4_ARATH	56.115	139	52	4	1	138	1	131	5.49e-39	131

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706580	G7LIR8	97.122	139	4	0	1	139	1	139	1.07e-91	271

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001950	Msa0706580	0.814948	1.188023e-51	-8.615850e-47
Msa0003470	Msa0706580	0.816898	4.361453e-52	-8.615850e-47
Msa0006580	Msa0706580	0.809779	1.598555e-50	-8.615850e-47
Msa0006870	Msa0706580	0.830985	2.157568e-55	-8.615850e-47
Msa0012460	Msa0706580	0.818833	1.594420e-52	-8.615850e-47
Msa0017120	Msa0706580	0.804226	2.391408e-49	-8.615850e-47
Msa0017940	Msa0706580	0.840953	6.373504e-58	-8.615850e-47
Msa0030730	Msa0706580	0.804301	2.307359e-49	-8.615850e-47
Msa0032400	Msa0706580	0.806095	9.715235e-50	-8.615850e-47
Msa0034320	Msa0706580	0.813541	2.429802e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706580	MtrunA17_Chr8g0385881	97.122	139	4	0	1	139	1	139	2.07e-95	271
Msa0706580	MtrunA17_Chr2g0286471	47.552	143	65	4	1	138	1	138	3.23e-38	126
Msa0706580	MtrunA17_Chr2g0286481	51.220	123	52	4	22	138	18	138	4.16e-34	115
Msa0706580	MtrunA17_Chr1g0191251	50.000	80	35	2	56	133	10	86	6.21e-18	73.6
Msa0706580	MtrunA17_Chr7g0249801	45.833	72	37	2	61	131	42	112	1.35e-11	57.8
Msa0706580	MtrunA17_Chr7g0249561	41.772	79	44	2	61	138	53	130	3.77e-11	57.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706580	AT4G25050.1	56.115	139	52	4	1	138	1	131	5.58e-40	131
Msa0706580	AT4G25050.2	51.656	151	52	5	1	138	1	143	1.54e-36	122
Msa0706580	AT3G05020.1	50.000	136	52	4	4	138	16	136	2.95e-34	116
Msa0706580	AT5G27200.1	58.163	98	38	2	42	138	42	137	1.24e-31	110
Msa0706580	AT1G54630.1	43.137	153	53	7	1	138	1	134	2.61e-28	101
Msa0706580	AT1G54580.1	57.647	85	34	1	54	138	52	134	1.17e-26	97.4
Msa0706580	AT1G65290.1	41.772	79	44	2	61	138	49	126	1.71e-11	58.2
Msa0706580	AT1G54630.2	53.448	58	25	1	54	111	52	107	3.21e-11	57.0

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Find 61 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAGAAGATCTCAAAGA+AGG	0.566334	4_4:+79595062	None:intergenic
AAAGAAAGATTAAGCTTAAG+AGG	0.355256	4_4:-79594445	Msa0706580:exon
AACAAAATTGGCTTATTATG+GGG	0.535892	4_4:+79596055	None:intergenic
AACTTTCTAAAACCCACATT+AGG	0.476053	4_4:+79594152	None:intergenic
AAGAGAGGTGGTTGAAAGAG+AGG	0.539433	4_4:+79595890	None:intergenic
AATACATTGTGAACTGAGTT+AGG	0.285621	4_4:-79594397	Msa0706580:three_prime_UTR
AATAGTAAGTGATATGGATT+GGG	0.482864	4_4:+79595943	None:intergenic
ACAATTTAACCAAGTTACAA+TGG	0.568659	4_4:+79594293	None:intergenic
ACCATGTACCTATATTCTAT+GGG	0.590623	4_4:+79594056	None:intergenic
ACCCACATTAGGCACAAGGA+TGG	0.589368	4_4:+79594163	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTAGTAGTAGTAGTAGTA+AGG	+	chr4_4:79594089-79594108	None:intergenic	30.0%
GAATAGTAAGTGATATGGAT+TGG	+	chr4_4:79594125-79594144	None:intergenic	30.0%
CTTGTAGAGAAATTGAAAGA+GGG	+	chr4_4:79594209-79594228	None:intergenic	30.0%
GTAAGTATATGCATTAAGAG+TGG	+	chr4_4:79594259-79594278	None:intergenic	30.0%
GTTTGACATTTGATATGTTG+TGG	-	chr4_4:79594333-79594352	Msa0706580:three_prime_UTR	30.0%
CCAACACCTAAATTATCAAT+TGG	+	chr4_4:79594579-79594598	None:intergenic	30.0%
TATAGCATAGTTACATTGGT+AGG	-	chr4_4:79594610-79594629	Msa0706580:intron	30.0%
TGATTCTTAATTAATGTGGC+AGG	-	chr4_4:79595484-79595503	Msa0706580:intron	30.0%
AATACATTGTGAACTGAGTT+AGG	-	chr4_4:79595667-79595686	Msa0706580:intron	30.0%
ATACATTGTGAACTGAGTTA+GGG	-	chr4_4:79595668-79595687	Msa0706580:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	79594004	79596082	79594004	ID=Msa0706580;Name=Msa0706580
chr4_4	mRNA	79594004	79596082	79594004	ID=Msa0706580-mRNA-1;Parent=Msa0706580;Name=Msa0706580-mRNA-1;_AED=0.06;_eAED=0.06;_QI=166\|1\|1\|1\|0.5\|0.4\|5\|389\|139
chr4_4	exon	79594004	79594090	79594004	ID=Msa0706580-mRNA-1:exon:25705;Parent=Msa0706580-mRNA-1
chr4_4	exon	79594153	79594580	79594153	ID=Msa0706580-mRNA-1:exon:25704;Parent=Msa0706580-mRNA-1
chr4_4	exon	79594836	79594964	79594836	ID=Msa0706580-mRNA-1:exon:25703;Parent=Msa0706580-mRNA-1
chr4_4	exon	79595049	79595144	79595049	ID=Msa0706580-mRNA-1:exon:25702;Parent=Msa0706580-mRNA-1
chr4_4	exon	79595848	79596082	79595848	ID=Msa0706580-mRNA-1:exon:25701;Parent=Msa0706580-mRNA-1
chr4_4	five_prime_UTR	79595917	79596082	79595917	ID=Msa0706580-mRNA-1:five_prime_utr;Parent=Msa0706580-mRNA-1
chr4_4	CDS	79595848	79595916	79595848	ID=Msa0706580-mRNA-1:cds;Parent=Msa0706580-mRNA-1
chr4_4	CDS	79595049	79595144	79595049	ID=Msa0706580-mRNA-1:cds;Parent=Msa0706580-mRNA-1
chr4_4	CDS	79594836	79594964	79594836	ID=Msa0706580-mRNA-1:cds;Parent=Msa0706580-mRNA-1
chr4_4	CDS	79594455	79594580	79594455	ID=Msa0706580-mRNA-1:cds;Parent=Msa0706580-mRNA-1
chr4_4	three_prime_UTR	79594153	79594454	79594153	ID=Msa0706580-mRNA-1:three_prime_utr;Parent=Msa0706580-mRNA-1
chr4_4	three_prime_UTR	79594004	79594090	79594004	ID=Msa0706580-mRNA-1:three_prime_utr;Parent=Msa0706580-mRNA-1

Gene Sequence

>Msa0706580

ATGGCCTCTCTTTCAACCACCTCTCTTACCTTTCAACCCTCTTTCAATTTCTCTACAAGGACTAACCAGGTTTCTTTCAGAACTTCAAGTTTTGGTGCAATTTCTGTGGGATGTACAAAGAGAAGTTTTCCTTCTTTGAGATCTTCTCGTTTCCGCATTTGTGCAATTCAGGCACAACCTGAGACAGTGGAGAAAGTGAGCAAAATTGTGAGAAAACAACTTGCTTTGACTCCTGAAACCAAGCTTACCCCAGAAACTAAATTTTCAGAACTTGGTGCTGATTCTCTTGACACTGTGGAAATAGTGATGGGTTTAGAGGAAGAGTTTAACCTTAATATTGAGGATGATAATGCTGAAGACATCACAACCATTCAACAAGCAGCTGATTTGATAGAGAAACTGATTCAAAAGAAAGATTAA

Protein sequence

>Msa0706580

MASLSTTSLTFQPSFNFSTRTNQVSFRTSSFGAISVGCTKRSFPSLRSSRFRICAIQAQPETVEKVSKIVRKQLALTPETKLTPETKFSELGADSLDTVEIVMGLEEEFNLNIEDDNAEDITTIQQAADLIEKLIQKKD*