Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788060 | sp|Q9FG70|NSTU2_ARATH | 76.149 | 348 | 69 | 3 | 1 | 334 | 26 | 373 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788060 | G7KEK1 | 95.291 | 361 | 5 | 2 | 1 | 349 | 25 | 385 | 0.0 | 681 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0788060 | 0.810656 | 1.034441e-50 | -8.615850e-47 |
| Msa0744160 | Msa0788060 | 0.882594 | 9.138077e-71 | -8.615850e-47 |
| Msa0788060 | Msa0810480 | 0.809209 | 2.119012e-50 | -8.615850e-47 |
| Msa0788060 | Msa0825230 | 0.896437 | 3.692879e-76 | -8.615850e-47 |
| Msa0788060 | Msa0864460 | 0.840760 | 7.161730e-58 | -8.615850e-47 |
| Msa0788060 | Msa0880140 | 0.807057 | 6.088469e-50 | -8.615850e-47 |
| Msa0788060 | Msa0944030 | 0.816848 | 4.475262e-52 | -8.615850e-47 |
| Msa0788060 | Msa1431430 | 0.800958 | 1.128673e-48 | -8.615850e-47 |
| Msa0788060 | Msa1460390 | 0.806800 | 6.899894e-50 | -8.615850e-47 |
| Msa0157290 | Msa0788060 | 0.810988 | 8.764380e-51 | -8.615850e-47 |
| Msa0243600 | Msa0788060 | 0.801088 | 1.061680e-48 | -8.615850e-47 |
| Msa0337540 | Msa0788060 | 0.812341 | 4.451253e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788060 | MtrunA17_Chr5g0446851 | 95.291 | 361 | 5 | 2 | 1 | 349 | 25 | 385 | 0.0 | 681 |
| Msa0788060 | MtrunA17_Chr2g0298931 | 58.571 | 350 | 130 | 3 | 2 | 337 | 25 | 373 | 1.45e-145 | 416 |
| Msa0788060 | MtrunA17_Chr2g0326791 | 28.242 | 347 | 209 | 6 | 31 | 344 | 10 | 349 | 4.16e-34 | 128 |
| Msa0788060 | MtrunA17_Chr6g0467391 | 28.947 | 304 | 193 | 4 | 31 | 318 | 10 | 306 | 1.20e-32 | 124 |
| Msa0788060 | MtrunA17_Chr6g0467371 | 28.947 | 304 | 193 | 4 | 31 | 318 | 10 | 306 | 1.20e-32 | 124 |
| Msa0788060 | MtrunA17_Chr4g0028931 | 26.923 | 338 | 214 | 5 | 31 | 335 | 10 | 347 | 1.38e-31 | 121 |
| Msa0788060 | MtrunA17_Chr3g0128951 | 28.879 | 232 | 154 | 2 | 110 | 337 | 97 | 321 | 2.14e-27 | 110 |
| Msa0788060 | MtrunA17_Chr3g0128961 | 24.633 | 341 | 204 | 5 | 49 | 349 | 28 | 355 | 1.23e-26 | 108 |
| Msa0788060 | MtrunA17_Chr3g0129401 | 27.742 | 310 | 199 | 6 | 38 | 330 | 20 | 321 | 2.42e-26 | 107 |
| Msa0788060 | MtrunA17_Chr1g0157501 | 31.034 | 319 | 195 | 6 | 35 | 333 | 15 | 328 | 3.74e-24 | 101 |
| Msa0788060 | MtrunA17_Chr5g0393381 | 31.861 | 317 | 192 | 9 | 33 | 329 | 15 | 327 | 8.24e-24 | 100 |
| Msa0788060 | MtrunA17_Chr1g0201531 | 27.211 | 294 | 201 | 4 | 22 | 302 | 4 | 297 | 1.50e-23 | 99.4 |
| Msa0788060 | MtrunA17_Chr8g0383381 | 27.245 | 323 | 215 | 6 | 38 | 340 | 20 | 342 | 1.66e-20 | 90.9 |
| Msa0788060 | MtrunA17_Chr3g0114581 | 22.222 | 315 | 220 | 6 | 44 | 337 | 27 | 337 | 1.67e-14 | 73.6 |
| Msa0788060 | MtrunA17_Chr1g0160071 | 20.872 | 321 | 229 | 6 | 44 | 347 | 26 | 338 | 6.99e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788060 | AT5G55950.1 | 76.149 | 348 | 69 | 3 | 1 | 334 | 26 | 373 | 0.0 | 531 |
| Msa0788060 | AT5G55950.4 | 74.760 | 313 | 65 | 3 | 36 | 334 | 1 | 313 | 6.30e-163 | 459 |
| Msa0788060 | AT5G55950.2 | 81.579 | 266 | 37 | 2 | 1 | 254 | 26 | 291 | 2.32e-154 | 436 |
| Msa0788060 | AT5G55950.3 | 73.986 | 296 | 63 | 3 | 54 | 335 | 1 | 296 | 1.09e-151 | 429 |
| Msa0788060 | AT5G57100.1 | 61.491 | 322 | 109 | 2 | 2 | 308 | 31 | 352 | 1.22e-139 | 402 |
| Msa0788060 | AT5G57100.2 | 61.194 | 268 | 89 | 2 | 2 | 254 | 31 | 298 | 1.92e-113 | 332 |
| Msa0788060 | AT5G57100.4 | 62.996 | 227 | 84 | 0 | 111 | 337 | 40 | 266 | 1.54e-95 | 285 |
| Msa0788060 | AT5G57100.3 | 58.294 | 211 | 73 | 2 | 2 | 197 | 31 | 241 | 4.53e-80 | 246 |
| Msa0788060 | AT2G30460.1 | 30.631 | 333 | 179 | 9 | 49 | 338 | 28 | 351 | 4.85e-35 | 131 |
| Msa0788060 | AT2G30460.2 | 30.631 | 333 | 179 | 9 | 49 | 338 | 28 | 351 | 4.85e-35 | 131 |
| Msa0788060 | AT1G06890.4 | 30.702 | 342 | 196 | 10 | 19 | 334 | 2 | 328 | 4.03e-34 | 129 |
| Msa0788060 | AT1G06890.2 | 30.702 | 342 | 196 | 10 | 19 | 334 | 2 | 328 | 4.38e-34 | 129 |
| Msa0788060 | AT1G06890.1 | 30.702 | 342 | 196 | 10 | 19 | 334 | 2 | 328 | 4.38e-34 | 129 |
| Msa0788060 | AT1G06890.3 | 30.702 | 342 | 196 | 10 | 19 | 334 | 2 | 328 | 5.31e-34 | 129 |
| Msa0788060 | AT2G30460.3 | 30.868 | 311 | 169 | 8 | 71 | 338 | 23 | 330 | 1.12e-33 | 127 |
| Msa0788060 | AT2G30460.6 | 30.868 | 311 | 169 | 8 | 71 | 338 | 23 | 330 | 1.12e-33 | 127 |
| Msa0788060 | AT2G30460.5 | 30.868 | 311 | 169 | 8 | 71 | 338 | 23 | 330 | 1.12e-33 | 127 |
| Msa0788060 | AT2G28315.1 | 27.907 | 301 | 195 | 4 | 21 | 305 | 2 | 296 | 1.22e-28 | 114 |
| Msa0788060 | AT2G28315.2 | 28.115 | 313 | 200 | 5 | 21 | 317 | 2 | 305 | 3.52e-28 | 112 |
| Msa0788060 | AT5G42420.1 | 31.940 | 335 | 202 | 8 | 35 | 345 | 18 | 350 | 1.94e-27 | 110 |
| Msa0788060 | AT4G09810.1 | 26.727 | 333 | 222 | 7 | 23 | 337 | 5 | 333 | 8.15e-27 | 108 |
| Msa0788060 | AT1G21070.1 | 30.178 | 338 | 208 | 8 | 32 | 346 | 15 | 347 | 1.04e-26 | 108 |
| Msa0788060 | AT1G34020.2 | 26.415 | 318 | 212 | 7 | 38 | 337 | 20 | 333 | 3.33e-25 | 104 |
| Msa0788060 | AT1G34020.1 | 26.415 | 318 | 212 | 7 | 38 | 337 | 20 | 333 | 3.33e-25 | 104 |
| Msa0788060 | AT1G34020.3 | 26.415 | 318 | 212 | 7 | 38 | 337 | 20 | 333 | 3.33e-25 | 104 |
| Msa0788060 | AT1G76670.2 | 28.530 | 347 | 224 | 7 | 20 | 344 | 2 | 346 | 8.17e-25 | 103 |
| Msa0788060 | AT1G76670.1 | 28.530 | 347 | 224 | 7 | 20 | 344 | 2 | 346 | 8.17e-25 | 103 |
| Msa0788060 | AT4G39390.1 | 26.727 | 333 | 227 | 6 | 17 | 336 | 4 | 332 | 1.48e-19 | 88.6 |
| Msa0788060 | AT4G39390.2 | 26.727 | 333 | 227 | 6 | 17 | 336 | 4 | 332 | 1.48e-19 | 88.6 |
| Msa0788060 | AT4G39390.3 | 26.888 | 331 | 225 | 6 | 19 | 336 | 2 | 328 | 2.31e-19 | 88.2 |
| Msa0788060 | AT4G09810.2 | 26.471 | 238 | 161 | 5 | 110 | 337 | 43 | 276 | 3.25e-18 | 84.0 |
| Msa0788060 | AT2G30460.4 | 29.500 | 200 | 111 | 5 | 49 | 227 | 28 | 218 | 1.42e-17 | 83.2 |
| Msa0788060 | AT1G77610.1 | 23.125 | 320 | 219 | 6 | 44 | 346 | 21 | 330 | 2.60e-16 | 79.3 |
| Msa0788060 | AT4G09810.3 | 28.431 | 204 | 138 | 2 | 23 | 218 | 5 | 208 | 3.59e-16 | 77.4 |
| Msa0788060 | AT1G21870.1 | 22.118 | 321 | 223 | 6 | 44 | 347 | 27 | 337 | 3.05e-15 | 76.3 |
| Msa0788060 | AT1G53660.1 | 27.564 | 312 | 187 | 15 | 45 | 330 | 30 | 328 | 5.64e-11 | 63.5 |
| Msa0788060 | AT1G53660.3 | 27.564 | 312 | 187 | 15 | 45 | 330 | 48 | 346 | 6.94e-11 | 63.2 |
Find 72 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTATAGTTGCAATTATA+TGG | 0.196565 | 5_2:+74373880 | Msa0788060:CDS |
| TGAACAAATGTGAGGAAAAT+TGG | 0.206523 | 5_2:-74372803 | None:intergenic |
| GATTTAGAGTTCAATTTATT+TGG | 0.233562 | 5_2:+74373858 | Msa0788060:CDS |
| CAATTTCTTCAAACACTATT+AGG | 0.235582 | 5_2:+74374696 | Msa0788060:three_prime_UTR |
| CAAACACTATTAGGCAATTC+AGG | 0.243025 | 5_2:+74374705 | Msa0788060:three_prime_UTR |
| CGCATTATCCTTCAACTTCA+TGG | 0.275264 | 5_2:+74372607 | Msa0788060:CDS |
| CTAATAGTGTTTGAAGAAAT+TGG | 0.275518 | 5_2:-74374695 | None:intergenic |
| TTCTAGGAGCTTTGATGCCT+TGG | 0.276040 | 5_2:+74374092 | Msa0788060:CDS |
| TGGTCAGGTGCCTTGGCATT+AGG | 0.292303 | 5_2:+74374205 | Msa0788060:CDS |
| TTACATCCCACTTGAATGAT+AGG | 0.344646 | 5_2:-74374132 | None:intergenic |
| GGTCAGGTGCCTTGGCATTA+GGG | 0.373196 | 5_2:+74374206 | Msa0788060:CDS |
| CTGTTATTCGACTCAGATCC+AGG | 0.381897 | 5_2:+74374437 | Msa0788060:CDS |
| GATCATCATGGCAAACAAAT+TGG | 0.383428 | 5_2:+74372640 | Msa0788060:CDS |
| GTCCGCAATATCTTTGTTGT+TGG | 0.384372 | 5_2:-74372577 | None:intergenic |
| GAACAAATGTGAGGAAAATT+GGG | 0.386839 | 5_2:-74372802 | None:intergenic |
| AAGACCTGTGTTATTCTGTT+GGG | 0.387128 | 5_2:+74374407 | Msa0788060:CDS |
| ATTTACAGCAGCAAGGAAAC+TGG | 0.392992 | 5_2:+74373940 | Msa0788060:CDS |
| TGTTACTCCAACAATTGTTC+TGG | 0.395251 | 5_2:+74373611 | Msa0788060:CDS |
| ATATCTTTGTTGTTGGCGCT+TGG | 0.395651 | 5_2:-74372570 | None:intergenic |
| TTCAACTTCATGGTTGCTGT+TGG | 0.397088 | 5_2:+74372617 | Msa0788060:CDS |
| TCAACTTCATGGTTGCTGTT+GGG | 0.398882 | 5_2:+74372618 | Msa0788060:CDS |
| GCTTGGCTCCTTCCGAGGTT+CGG | 0.411178 | 5_2:-74372553 | None:intergenic |
| CCTAGAAAGAAAACTGTGAT+AGG | 0.412694 | 5_2:-74374076 | None:intergenic |
| TCAGACAACAATGTTATTGT+TGG | 0.416058 | 5_2:-74374633 | None:intergenic |
| TAACAGCAATCTTAGCCATT+TGG | 0.422409 | 5_2:-74373593 | None:intergenic |
| AACTCTGCCAGAACAATTGT+TGG | 0.424008 | 5_2:-74373618 | None:intergenic |
| CTTACAGTGGTCAGGTGCCT+TGG | 0.424187 | 5_2:+74374198 | Msa0788060:CDS |
| CCGCCAATGCTCACAATCCC+TGG | 0.432667 | 5_2:-74374455 | None:intergenic |
| TCTTTGTTGTCTTCACTAGC+TGG | 0.443142 | 5_2:-74374593 | None:intergenic |
| CAGTGTTGGTTTCTACCAAA+TGG | 0.447856 | 5_2:+74373578 | Msa0788060:CDS |
| GCTTTGGCTGCTGTATCAGC+TGG | 0.447867 | 5_2:+74373813 | Msa0788060:CDS |
| CAGTTCAGTTCATGCAGTGT+TGG | 0.449065 | 5_2:+74373564 | Msa0788060:intron |
| TTCTCTTCTATATTTGCACT+TGG | 0.450424 | 5_2:+74372908 | Msa0788060:CDS |
| GCAAGGAAACTGGACAGCTT+TGG | 0.461956 | 5_2:+74373950 | Msa0788060:CDS |
| GGAGCGGTTGTTGCTCTCAC+TGG | 0.471179 | 5_2:+74374476 | Msa0788060:CDS |
| CCAGGGATTGTGAGCATTGG+CGG | 0.477565 | 5_2:+74374455 | Msa0788060:CDS |
| TAAGACCTGTGTTATTCTGT+TGG | 0.483155 | 5_2:+74374406 | Msa0788060:CDS |
| TGTTGCTCTCACTGGAATGT+CGG | 0.489922 | 5_2:+74374484 | Msa0788060:CDS |
| CACTTGAATGATAGGACTCC+TGG | 0.491316 | 5_2:-74374124 | None:intergenic |
| GTGTTTGAAGAAATTGGTTG+TGG | 0.496407 | 5_2:-74374689 | None:intergenic |
| AGTGCAAATATAGAAGAGAA+TGG | 0.515498 | 5_2:-74372905 | None:intergenic |
| AACAGCAACCATGAAGTTGA+AGG | 0.516911 | 5_2:-74372615 | None:intergenic |
| GTTGAAGGCAAACTATGCTT+CGG | 0.526876 | 5_2:-74374560 | None:intergenic |
| TTGGCGCTTGGCTCCTTCCG+AGG | 0.534697 | 5_2:-74372558 | None:intergenic |
| GAAATTATCAGGTAAAGCAC+TGG | 0.545102 | 5_2:+74372499 | None:intergenic |
| CTTTATTGTTGATAGGTGAT+GGG | 0.545367 | 5_2:+74372761 | Msa0788060:intron |
| TGATAGGTGATGGGAAGAGT+TGG | 0.547749 | 5_2:+74372770 | Msa0788060:intron |
| TTTCTCATTGTAGATTGATG+TGG | 0.552469 | 5_2:+74374044 | Msa0788060:intron |
| GATCCAGGGATTGTGAGCAT+TGG | 0.554791 | 5_2:+74374452 | Msa0788060:CDS |
| ACCTGTGTTATTCTGTTGGG+AGG | 0.560653 | 5_2:+74374410 | Msa0788060:CDS |
| AATGAGCTCCGAACCTCGGA+AGG | 0.566484 | 5_2:+74372545 | Msa0788060:CDS |
| TTGTTCACTACATCACTGCA+TGG | 0.573296 | 5_2:+74372819 | Msa0788060:CDS |
| AACAATAACATTGTTGTCTG+AGG | 0.579088 | 5_2:+74374635 | Msa0788060:CDS |
| TGTTATTCGACTCAGATCCA+GGG | 0.579974 | 5_2:+74374438 | Msa0788060:CDS |
| TGGTCTAATTTACAGCAGCA+AGG | 0.584781 | 5_2:+74373933 | Msa0788060:CDS |
| TTGAAGGATAATGCGACCAC+TGG | 0.591814 | 5_2:-74372599 | None:intergenic |
| CTACAATGAGCTCCGAACCT+CGG | 0.592720 | 5_2:+74372541 | Msa0788060:CDS |
| CGCCAACAACAAAGATATTG+CGG | 0.594240 | 5_2:+74372575 | Msa0788060:CDS |
| CAGGAGTCCTATCATTCAAG+TGG | 0.594492 | 5_2:+74374125 | Msa0788060:CDS |
| ATGCCTTGGATTGATCCACC+AGG | 0.606051 | 5_2:+74374106 | Msa0788060:CDS |
| GATTGTGAGCATTGGCGGAG+CGG | 0.615894 | 5_2:+74374460 | Msa0788060:CDS |
| AAAGTGCCTTGAAAATTGCA+AGG | 0.638843 | 5_2:-74372847 | None:intergenic |
| ACTCCTGGTGGATCAATCCA+AGG | 0.644949 | 5_2:-74374109 | None:intergenic |
| GTAGTCTTACCCTAATGCCA+AGG | 0.645323 | 5_2:-74374215 | None:intergenic |
| TGTAGCAGTTGCAACTGTGT+CGG | 0.648797 | 5_2:+74373836 | Msa0788060:CDS |
| GCCTCCCAACAGAATAACAC+AGG | 0.658463 | 5_2:-74374411 | None:intergenic |
| AGGAGTCCTATCATTCAAGT+GGG | 0.665530 | 5_2:+74374126 | Msa0788060:CDS |
| GGTTGCTGTTGGGATCATCA+TGG | 0.682153 | 5_2:+74372628 | Msa0788060:CDS |
| ACAAAGATATTGCGGACCAG+TGG | 0.685300 | 5_2:+74372583 | Msa0788060:CDS |
| TTGAATGATAGGACTCCTGG+TGG | 0.704189 | 5_2:-74374121 | None:intergenic |
| TGATGTAGTGAACAAATGTG+AGG | 0.721156 | 5_2:-74372811 | None:intergenic |
| ACCACTGTAAGAGAAAACCG+AGG | 0.773883 | 5_2:-74374186 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATTTATTTCCTTGAA+TGG | + | chr5_2:74373361-74373380 | Msa0788060:intron | 15.0% |
| !!! | AGACCATAAAATTTTATTTA+TGG | - | chr5_2:74373919-74373938 | None:intergenic | 15.0% |
| !!! | TAATTTTACAAAAGAGAAAT+TGG | - | chr5_2:74373998-74374017 | None:intergenic | 15.0% |
| !!! | AATTTTGTTCAAGATTATTT+TGG | + | chr5_2:74374792-74374811 | Msa0788060:three_prime_UTR | 15.0% |
| !!! | ATTTTGTTCAAGATTATTTT+GGG | + | chr5_2:74374793-74374812 | Msa0788060:three_prime_UTR | 15.0% |
| !! | ATATAATTTATTTCCTTGAA+TGG | + | chr5_2:74373361-74373380 | Msa0788060:intron | 15.0% |
| !!! | AGACCATAAAATTTTATTTA+TGG | - | chr5_2:74373919-74373938 | None:intergenic | 15.0% |
| !!! | TAATTTTACAAAAGAGAAAT+TGG | - | chr5_2:74373998-74374017 | None:intergenic | 15.0% |
| !!! | AATTTTGTTCAAGATTATTT+TGG | + | chr5_2:74374792-74374811 | Msa0788060:three_prime_UTR | 15.0% |
| !! | GATATAACTTTATTGTTGAT+AGG | + | chr5_2:74372754-74372773 | Msa0788060:intron | 20.0% |
| !! | TTGGTATGAAAAATAAACAA+AGG | - | chr5_2:74373035-74373054 | None:intergenic | 20.0% |
| !! | TTAAAAGTCAATGACTAATT+TGG | - | chr5_2:74373054-74373073 | None:intergenic | 20.0% |
| !! | ATGTTTCAAATTTGTAAATG+TGG | + | chr5_2:74373127-74373146 | Msa0788060:intron | 20.0% |
| !! | AAAGATTATGTTAATTGTCA+TGG | + | chr5_2:74373253-74373272 | Msa0788060:intron | 20.0% |
| !!! | TTGTCATGGATTTTTTTTAA+AGG | + | chr5_2:74373267-74373286 | Msa0788060:intron | 20.0% |
| !!! | TTTTTAAAGGTTAATTGTGA+TGG | + | chr5_2:74373280-74373299 | Msa0788060:intron | 20.0% |
| !! | AAAAACCATTTCTTCAAAAA+AGG | + | chr5_2:74373653-74373672 | Msa0788060:CDS | 20.0% |
| !! | CATAAACCATTTCAAATATA+TGG | + | chr5_2:74373715-74373734 | Msa0788060:intron | 20.0% |
| !!! | TCTTTTCCATATATTTGAAA+TGG | - | chr5_2:74373724-74373743 | None:intergenic | 20.0% |
| !! | GTGCATAAAAAATAATTGTA+TGG | - | chr5_2:74373753-74373772 | None:intergenic | 20.0% |
| !!! | GATTTAGAGTTCAATTTATT+TGG | + | chr5_2:74373858-74373877 | Msa0788060:CDS | 20.0% |
| !!! | AAAATTTTATTTATGGCACT+TGG | - | chr5_2:74373912-74373931 | None:intergenic | 20.0% |
| !!! | GTGCCATAAATAAAATTTTA+TGG | + | chr5_2:74373913-74373932 | Msa0788060:CDS | 20.0% |
| !! | ATATTATTATCAATCAATGC+AGG | + | chr5_2:74374345-74374364 | Msa0788060:intron | 20.0% |
| !! | TATTATTATCAATCAATGCA+GGG | + | chr5_2:74374346-74374365 | Msa0788060:intron | 20.0% |
| !! | GATATAACTTTATTGTTGAT+AGG | + | chr5_2:74372754-74372773 | Msa0788060:intron | 20.0% |
| !! | TTGGTATGAAAAATAAACAA+AGG | - | chr5_2:74373035-74373054 | None:intergenic | 20.0% |
| !! | TTAAAAGTCAATGACTAATT+TGG | - | chr5_2:74373054-74373073 | None:intergenic | 20.0% |
| !! | ATGTTTCAAATTTGTAAATG+TGG | + | chr5_2:74373127-74373146 | Msa0788060:intron | 20.0% |
| !! | AAAGATTATGTTAATTGTCA+TGG | + | chr5_2:74373253-74373272 | Msa0788060:intron | 20.0% |
| !!! | TTGTCATGGATTTTTTTTAA+AGG | + | chr5_2:74373267-74373286 | Msa0788060:intron | 20.0% |
| !!! | TTTTTAAAGGTTAATTGTGA+TGG | + | chr5_2:74373280-74373299 | Msa0788060:intron | 20.0% |
| !! | AAAAACCATTTCTTCAAAAA+AGG | + | chr5_2:74373653-74373672 | Msa0788060:CDS | 20.0% |
| !! | CATAAACCATTTCAAATATA+TGG | + | chr5_2:74373715-74373734 | Msa0788060:intron | 20.0% |
| !!! | TCTTTTCCATATATTTGAAA+TGG | - | chr5_2:74373724-74373743 | None:intergenic | 20.0% |
| !! | GTGCATAAAAAATAATTGTA+TGG | - | chr5_2:74373753-74373772 | None:intergenic | 20.0% |
| !!! | GATTTAGAGTTCAATTTATT+TGG | + | chr5_2:74373858-74373877 | Msa0788060:CDS | 20.0% |
| !!! | AAAATTTTATTTATGGCACT+TGG | - | chr5_2:74373912-74373931 | None:intergenic | 20.0% |
| !!! | GTGCCATAAATAAAATTTTA+TGG | + | chr5_2:74373913-74373932 | Msa0788060:CDS | 20.0% |
| !! | ATATTATTATCAATCAATGC+AGG | + | chr5_2:74374345-74374364 | Msa0788060:intron | 20.0% |
| !! | TATTATTATCAATCAATGCA+GGG | + | chr5_2:74374346-74374365 | Msa0788060:intron | 20.0% |
| ! | ATTAGGTCAGTAATGAAAAT+TGG | - | chr5_2:74373096-74373115 | None:intergenic | 25.0% |
| ! | AAACATAATGACTGAACATT+AGG | - | chr5_2:74373113-74373132 | None:intergenic | 25.0% |
| !!! | TGTCAACATGGATTTAATTT+TGG | - | chr5_2:74373199-74373218 | None:intergenic | 25.0% |
| ! | CATAGATGAAGAATTAAGTT+TGG | + | chr5_2:74373408-74373427 | Msa0788060:intron | 25.0% |
| !!! | TTTGACCTTTTTTGAAGAAA+TGG | - | chr5_2:74373661-74373680 | None:intergenic | 25.0% |
| ! | GCACTAATTAATCATGTAAT+TGG | + | chr5_2:74373769-74373788 | Msa0788060:intron | 25.0% |
| !!! | TGTTGTGTTTTGTTTAAGTA+AGG | + | chr5_2:74374307-74374326 | Msa0788060:intron | 25.0% |
| ! | CTAATAGTGTTTGAAGAAAT+TGG | - | chr5_2:74374698-74374717 | None:intergenic | 25.0% |
| ! | CAATTTCTTCAAACACTATT+AGG | + | chr5_2:74374696-74374715 | Msa0788060:three_prime_UTR | 25.0% |
| ! | ATTAGGTCAGTAATGAAAAT+TGG | - | chr5_2:74373096-74373115 | None:intergenic | 25.0% |
| ! | AAACATAATGACTGAACATT+AGG | - | chr5_2:74373113-74373132 | None:intergenic | 25.0% |
| !!! | TGTCAACATGGATTTAATTT+TGG | - | chr5_2:74373199-74373218 | None:intergenic | 25.0% |
| ! | CATAGATGAAGAATTAAGTT+TGG | + | chr5_2:74373408-74373427 | Msa0788060:intron | 25.0% |
| !!! | TTTGACCTTTTTTGAAGAAA+TGG | - | chr5_2:74373661-74373680 | None:intergenic | 25.0% |
| ! | GCACTAATTAATCATGTAAT+TGG | + | chr5_2:74373769-74373788 | Msa0788060:intron | 25.0% |
| !!! | TGTTGTGTTTTGTTTAAGTA+AGG | + | chr5_2:74374307-74374326 | Msa0788060:intron | 25.0% |
| ! | CTAATAGTGTTTGAAGAAAT+TGG | - | chr5_2:74374698-74374717 | None:intergenic | 25.0% |
| ! | CAATTTCTTCAAACACTATT+AGG | + | chr5_2:74374696-74374715 | Msa0788060:three_prime_UTR | 25.0% |
| AACATACATGCAATATGAGA+AGG | - | chr5_2:74372678-74372697 | None:intergenic | 30.0% | |
| ! | ACTTTATTGTTGATAGGTGA+TGG | + | chr5_2:74372760-74372779 | Msa0788060:intron | 30.0% |
| ! | CTTTATTGTTGATAGGTGAT+GGG | + | chr5_2:74372761-74372780 | Msa0788060:intron | 30.0% |
| GAACAAATGTGAGGAAAATT+GGG | - | chr5_2:74372805-74372824 | None:intergenic | 30.0% | |
| TGAACAAATGTGAGGAAAAT+TGG | - | chr5_2:74372806-74372825 | None:intergenic | 30.0% | |
| AGTGCAAATATAGAAGAGAA+TGG | - | chr5_2:74372908-74372927 | None:intergenic | 30.0% | |
| TTCTCTTCTATATTTGCACT+TGG | + | chr5_2:74372908-74372927 | Msa0788060:CDS | 30.0% | |
| TTTGCTCTAACATGTTTATC+AGG | + | chr5_2:74372994-74373013 | Msa0788060:intron | 30.0% | |
| AAATCTTACTTGACCATTCA+AGG | - | chr5_2:74373377-74373396 | None:intergenic | 30.0% | |
| ! | GAATGGTCAAGTAAGATTTT+TGG | + | chr5_2:74373378-74373397 | Msa0788060:intron | 30.0% |
| AACCTAATTGAAACTTAAGC+TGG | + | chr5_2:74373499-74373518 | Msa0788060:intron | 30.0% | |
| GTGCTATAGTTGCAATTATA+TGG | + | chr5_2:74373880-74373899 | Msa0788060:CDS | 30.0% | |
| TTTCTCATTGTAGATTGATG+TGG | + | chr5_2:74374044-74374063 | Msa0788060:intron | 30.0% | |
| GTAGAATTCTGTGTCAAAAA+GGG | - | chr5_2:74374278-74374297 | None:intergenic | 30.0% | |
| AGTAGAATTCTGTGTCAAAA+AGG | - | chr5_2:74374279-74374298 | None:intergenic | 30.0% | |
| TCAGACAACAATGTTATTGT+TGG | - | chr5_2:74374636-74374655 | None:intergenic | 30.0% | |
| AACAATAACATTGTTGTCTG+AGG | + | chr5_2:74374635-74374654 | Msa0788060:CDS | 30.0% | |
| TAAAAAACCTTGCTGCAAAA+TGG | - | chr5_2:74374738-74374757 | None:intergenic | 30.0% | |
| AACATACATGCAATATGAGA+AGG | - | chr5_2:74372678-74372697 | None:intergenic | 30.0% | |
| ! | ACTTTATTGTTGATAGGTGA+TGG | + | chr5_2:74372760-74372779 | Msa0788060:intron | 30.0% |
| ! | CTTTATTGTTGATAGGTGAT+GGG | + | chr5_2:74372761-74372780 | Msa0788060:intron | 30.0% |
| GAACAAATGTGAGGAAAATT+GGG | - | chr5_2:74372805-74372824 | None:intergenic | 30.0% | |
| TGAACAAATGTGAGGAAAAT+TGG | - | chr5_2:74372806-74372825 | None:intergenic | 30.0% | |
| AGTGCAAATATAGAAGAGAA+TGG | - | chr5_2:74372908-74372927 | None:intergenic | 30.0% | |
| TTCTCTTCTATATTTGCACT+TGG | + | chr5_2:74372908-74372927 | Msa0788060:CDS | 30.0% | |
| TTTGCTCTAACATGTTTATC+AGG | + | chr5_2:74372994-74373013 | Msa0788060:intron | 30.0% | |
| AAATCTTACTTGACCATTCA+AGG | - | chr5_2:74373377-74373396 | None:intergenic | 30.0% | |
| ! | GAATGGTCAAGTAAGATTTT+TGG | + | chr5_2:74373378-74373397 | Msa0788060:intron | 30.0% |
| AACCTAATTGAAACTTAAGC+TGG | + | chr5_2:74373499-74373518 | Msa0788060:intron | 30.0% | |
| GTGCTATAGTTGCAATTATA+TGG | + | chr5_2:74373880-74373899 | Msa0788060:CDS | 30.0% | |
| TTTCTCATTGTAGATTGATG+TGG | + | chr5_2:74374044-74374063 | Msa0788060:intron | 30.0% | |
| GTAGAATTCTGTGTCAAAAA+GGG | - | chr5_2:74374278-74374297 | None:intergenic | 30.0% | |
| AGTAGAATTCTGTGTCAAAA+AGG | - | chr5_2:74374279-74374298 | None:intergenic | 30.0% | |
| TCAGACAACAATGTTATTGT+TGG | - | chr5_2:74374636-74374655 | None:intergenic | 30.0% | |
| AACAATAACATTGTTGTCTG+AGG | + | chr5_2:74374635-74374654 | Msa0788060:CDS | 30.0% | |
| TAAAAAACCTTGCTGCAAAA+TGG | - | chr5_2:74374738-74374757 | None:intergenic | 30.0% | |
| GATCATCATGGCAAACAAAT+TGG | + | chr5_2:74372640-74372659 | Msa0788060:CDS | 35.0% | |
| TGATGTAGTGAACAAATGTG+AGG | - | chr5_2:74372814-74372833 | None:intergenic | 35.0% | |
| ! | GATTCTCCTTGCAATTTTCA+AGG | + | chr5_2:74372841-74372860 | Msa0788060:CDS | 35.0% |
| ! | AAAGTGCCTTGAAAATTGCA+AGG | - | chr5_2:74372850-74372869 | None:intergenic | 35.0% |
| !! | TGCAATTTTCAAGGCACTTT+CGG | + | chr5_2:74372850-74372869 | Msa0788060:CDS | 35.0% |
| !!! | AATGGAGTTGTTTTAGATGG+AGG | - | chr5_2:74372890-74372909 | None:intergenic | 35.0% |
| !!! | GAGAATGGAGTTGTTTTAGA+TGG | - | chr5_2:74372893-74372912 | None:intergenic | 35.0% |
| ACATGAACCTGTTATACTTG+AGG | - | chr5_2:74372973-74372992 | None:intergenic | 35.0% | |
| !! | TGACTTTGTTGTTGTCAACA+TGG | - | chr5_2:74373211-74373230 | None:intergenic | 35.0% |
| CACCAGCTTAAGTTTCAATT+AGG | - | chr5_2:74373504-74373523 | None:intergenic | 35.0% | |
| !! | TGGTGAAGTTTTGTCTAGTT+TGG | + | chr5_2:74373519-74373538 | Msa0788060:intron | 35.0% |
| TAACAGCAATCTTAGCCATT+TGG | - | chr5_2:74373596-74373615 | None:intergenic | 35.0% | |
| TGTTACTCCAACAATTGTTC+TGG | + | chr5_2:74373611-74373630 | Msa0788060:CDS | 35.0% | |
| TAATTGGAATGCAATGATCC+AGG | + | chr5_2:74373785-74373804 | Msa0788060:intron | 35.0% | |
| CCTAGAAAGAAAACTGTGAT+AGG | - | chr5_2:74374079-74374098 | None:intergenic | 35.0% | |
| ! | CCTATCACAGTTTTCTTTCT+AGG | + | chr5_2:74374076-74374095 | Msa0788060:CDS | 35.0% |
| TTACATCCCACTTGAATGAT+AGG | - | chr5_2:74374135-74374154 | None:intergenic | 35.0% | |
| !! | ATTTTGATATCTGCTCTCCT+CGG | + | chr5_2:74374169-74374188 | Msa0788060:CDS | 35.0% |
| ! | TAAGACCTGTGTTATTCTGT+TGG | + | chr5_2:74374406-74374425 | Msa0788060:CDS | 35.0% |
| ! | AAGACCTGTGTTATTCTGTT+GGG | + | chr5_2:74374407-74374426 | Msa0788060:CDS | 35.0% |
| GTGTTTGAAGAAATTGGTTG+TGG | - | chr5_2:74374692-74374711 | None:intergenic | 35.0% | |
| CAAACACTATTAGGCAATTC+AGG | + | chr5_2:74374705-74374724 | Msa0788060:three_prime_UTR | 35.0% | |
| ! | TTCAATTCCATTTTGCAGCA+AGG | + | chr5_2:74374728-74374747 | Msa0788060:three_prime_UTR | 35.0% |
| GATCATCATGGCAAACAAAT+TGG | + | chr5_2:74372640-74372659 | Msa0788060:CDS | 35.0% | |
| TGATGTAGTGAACAAATGTG+AGG | - | chr5_2:74372814-74372833 | None:intergenic | 35.0% | |
| ! | GATTCTCCTTGCAATTTTCA+AGG | + | chr5_2:74372841-74372860 | Msa0788060:CDS | 35.0% |
| ! | AAAGTGCCTTGAAAATTGCA+AGG | - | chr5_2:74372850-74372869 | None:intergenic | 35.0% |
| !! | TGCAATTTTCAAGGCACTTT+CGG | + | chr5_2:74372850-74372869 | Msa0788060:CDS | 35.0% |
| !!! | AATGGAGTTGTTTTAGATGG+AGG | - | chr5_2:74372890-74372909 | None:intergenic | 35.0% |
| !!! | GAGAATGGAGTTGTTTTAGA+TGG | - | chr5_2:74372893-74372912 | None:intergenic | 35.0% |
| ACATGAACCTGTTATACTTG+AGG | - | chr5_2:74372973-74372992 | None:intergenic | 35.0% | |
| !! | TGACTTTGTTGTTGTCAACA+TGG | - | chr5_2:74373211-74373230 | None:intergenic | 35.0% |
| CACCAGCTTAAGTTTCAATT+AGG | - | chr5_2:74373504-74373523 | None:intergenic | 35.0% | |
| !! | TGGTGAAGTTTTGTCTAGTT+TGG | + | chr5_2:74373519-74373538 | Msa0788060:intron | 35.0% |
| TAACAGCAATCTTAGCCATT+TGG | - | chr5_2:74373596-74373615 | None:intergenic | 35.0% | |
| TGTTACTCCAACAATTGTTC+TGG | + | chr5_2:74373611-74373630 | Msa0788060:CDS | 35.0% | |
| TAATTGGAATGCAATGATCC+AGG | + | chr5_2:74373785-74373804 | Msa0788060:intron | 35.0% | |
| CCTAGAAAGAAAACTGTGAT+AGG | - | chr5_2:74374079-74374098 | None:intergenic | 35.0% | |
| ! | CCTATCACAGTTTTCTTTCT+AGG | + | chr5_2:74374076-74374095 | Msa0788060:CDS | 35.0% |
| TTACATCCCACTTGAATGAT+AGG | - | chr5_2:74374135-74374154 | None:intergenic | 35.0% | |
| !! | ATTTTGATATCTGCTCTCCT+CGG | + | chr5_2:74374169-74374188 | Msa0788060:CDS | 35.0% |
| ! | TAAGACCTGTGTTATTCTGT+TGG | + | chr5_2:74374406-74374425 | Msa0788060:CDS | 35.0% |
| ! | AAGACCTGTGTTATTCTGTT+GGG | + | chr5_2:74374407-74374426 | Msa0788060:CDS | 35.0% |
| GTGTTTGAAGAAATTGGTTG+TGG | - | chr5_2:74374692-74374711 | None:intergenic | 35.0% | |
| CAAACACTATTAGGCAATTC+AGG | + | chr5_2:74374705-74374724 | Msa0788060:three_prime_UTR | 35.0% | |
| ! | TTCAATTCCATTTTGCAGCA+AGG | + | chr5_2:74374728-74374747 | Msa0788060:three_prime_UTR | 35.0% |
| !! | ATATCTTTGTTGTTGGCGCT+TGG | - | chr5_2:74372573-74372592 | None:intergenic | 40.0% |
| CGCCAACAACAAAGATATTG+CGG | + | chr5_2:74372575-74372594 | Msa0788060:CDS | 40.0% | |
| ! | GTCCGCAATATCTTTGTTGT+TGG | - | chr5_2:74372580-74372599 | None:intergenic | 40.0% |
| CGCATTATCCTTCAACTTCA+TGG | + | chr5_2:74372607-74372626 | Msa0788060:CDS | 40.0% | |
| AACAGCAACCATGAAGTTGA+AGG | - | chr5_2:74372618-74372637 | None:intergenic | 40.0% | |
| TTCAACTTCATGGTTGCTGT+TGG | + | chr5_2:74372617-74372636 | Msa0788060:CDS | 40.0% | |
| ! | TCAACTTCATGGTTGCTGTT+GGG | + | chr5_2:74372618-74372637 | Msa0788060:CDS | 40.0% |
| TTGTTCACTACATCACTGCA+TGG | + | chr5_2:74372819-74372838 | Msa0788060:CDS | 40.0% | |
| !! | ATTTGCACTTGGTGCTGTTA+TGG | + | chr5_2:74372919-74372938 | Msa0788060:intron | 40.0% |
| GAACTGTCAGCAAAAAGGAA+AGG | - | chr5_2:74373550-74373569 | None:intergenic | 40.0% | |
| GAACTGAACTGTCAGCAAAA+AGG | - | chr5_2:74373555-74373574 | None:intergenic | 40.0% | |
| !! | CAGTGTTGGTTTCTACCAAA+TGG | + | chr5_2:74373578-74373597 | Msa0788060:CDS | 40.0% |
| AACTCTGCCAGAACAATTGT+TGG | - | chr5_2:74373621-74373640 | None:intergenic | 40.0% | |
| ! | GAATGCAATGATCCAGGTTT+TGG | + | chr5_2:74373791-74373810 | Msa0788060:intron | 40.0% |
| !!! | AATGATCCAGGTTTTGGCTT+TGG | + | chr5_2:74373797-74373816 | Msa0788060:intron | 40.0% |
| TGGTCTAATTTACAGCAGCA+AGG | + | chr5_2:74373933-74373952 | Msa0788060:CDS | 40.0% | |
| ATTTACAGCAGCAAGGAAAC+TGG | + | chr5_2:74373940-74373959 | Msa0788060:CDS | 40.0% | |
| AGGAGTCCTATCATTCAAGT+GGG | + | chr5_2:74374126-74374145 | Msa0788060:CDS | 40.0% | |
| !!! | GCTACGACTCATGTTGTTTT+AGG | + | chr5_2:74374377-74374396 | Msa0788060:CDS | 40.0% |
| TGTTATTCGACTCAGATCCA+GGG | + | chr5_2:74374438-74374457 | Msa0788060:CDS | 40.0% | |
| GTTGAAGGCAAACTATGCTT+CGG | - | chr5_2:74374563-74374582 | None:intergenic | 40.0% | |
| ! | TCTTTGTTGTCTTCACTAGC+TGG | - | chr5_2:74374596-74374615 | None:intergenic | 40.0% |
| !! | ATATCTTTGTTGTTGGCGCT+TGG | - | chr5_2:74372573-74372592 | None:intergenic | 40.0% |
| CGCCAACAACAAAGATATTG+CGG | + | chr5_2:74372575-74372594 | Msa0788060:CDS | 40.0% | |
| ! | GTCCGCAATATCTTTGTTGT+TGG | - | chr5_2:74372580-74372599 | None:intergenic | 40.0% |
| CGCATTATCCTTCAACTTCA+TGG | + | chr5_2:74372607-74372626 | Msa0788060:CDS | 40.0% | |
| AACAGCAACCATGAAGTTGA+AGG | - | chr5_2:74372618-74372637 | None:intergenic | 40.0% | |
| TTCAACTTCATGGTTGCTGT+TGG | + | chr5_2:74372617-74372636 | Msa0788060:CDS | 40.0% | |
| ! | TCAACTTCATGGTTGCTGTT+GGG | + | chr5_2:74372618-74372637 | Msa0788060:CDS | 40.0% |
| TTGTTCACTACATCACTGCA+TGG | + | chr5_2:74372819-74372838 | Msa0788060:CDS | 40.0% | |
| !! | ATTTGCACTTGGTGCTGTTA+TGG | + | chr5_2:74372919-74372938 | Msa0788060:intron | 40.0% |
| GAACTGTCAGCAAAAAGGAA+AGG | - | chr5_2:74373550-74373569 | None:intergenic | 40.0% | |
| GAACTGAACTGTCAGCAAAA+AGG | - | chr5_2:74373555-74373574 | None:intergenic | 40.0% | |
| !! | CAGTGTTGGTTTCTACCAAA+TGG | + | chr5_2:74373578-74373597 | Msa0788060:CDS | 40.0% |
| AACTCTGCCAGAACAATTGT+TGG | - | chr5_2:74373621-74373640 | None:intergenic | 40.0% | |
| ! | GAATGCAATGATCCAGGTTT+TGG | + | chr5_2:74373791-74373810 | Msa0788060:intron | 40.0% |
| !!! | AATGATCCAGGTTTTGGCTT+TGG | + | chr5_2:74373797-74373816 | Msa0788060:intron | 40.0% |
| TGGTCTAATTTACAGCAGCA+AGG | + | chr5_2:74373933-74373952 | Msa0788060:CDS | 40.0% | |
| ATTTACAGCAGCAAGGAAAC+TGG | + | chr5_2:74373940-74373959 | Msa0788060:CDS | 40.0% | |
| AGGAGTCCTATCATTCAAGT+GGG | + | chr5_2:74374126-74374145 | Msa0788060:CDS | 40.0% | |
| !!! | GCTACGACTCATGTTGTTTT+AGG | + | chr5_2:74374377-74374396 | Msa0788060:CDS | 40.0% |
| TGTTATTCGACTCAGATCCA+GGG | + | chr5_2:74374438-74374457 | Msa0788060:CDS | 40.0% | |
| GTTGAAGGCAAACTATGCTT+CGG | - | chr5_2:74374563-74374582 | None:intergenic | 40.0% | |
| ! | TCTTTGTTGTCTTCACTAGC+TGG | - | chr5_2:74374596-74374615 | None:intergenic | 40.0% |
| ACAAAGATATTGCGGACCAG+TGG | + | chr5_2:74372583-74372602 | Msa0788060:CDS | 45.0% | |
| TTGAAGGATAATGCGACCAC+TGG | - | chr5_2:74372602-74372621 | None:intergenic | 45.0% | |
| !! | TGATAGGTGATGGGAAGAGT+TGG | + | chr5_2:74372770-74372789 | Msa0788060:intron | 45.0% |
| !! | GTTTTAGATGGAGGAGACAC+AGG | - | chr5_2:74372881-74372900 | None:intergenic | 45.0% |
| ! | GCTGTTATGGCTTTTGCATC+TGG | + | chr5_2:74372932-74372951 | Msa0788060:intron | 45.0% |
| ACACCAGCCTCAAGTATAAC+AGG | + | chr5_2:74372963-74372982 | Msa0788060:intron | 45.0% | |
| GAACCTGTTATACTTGAGGC+TGG | - | chr5_2:74372969-74372988 | None:intergenic | 45.0% | |
| CAGTTCAGTTCATGCAGTGT+TGG | + | chr5_2:74373564-74373583 | Msa0788060:intron | 45.0% | |
| TGTAGCAGTTGCAACTGTGT+CGG | + | chr5_2:74373836-74373855 | Msa0788060:CDS | 45.0% | |
| ! | TTCTAGGAGCTTTGATGCCT+TGG | + | chr5_2:74374092-74374111 | Msa0788060:CDS | 45.0% |
| TTGAATGATAGGACTCCTGG+TGG | - | chr5_2:74374124-74374143 | None:intergenic | 45.0% | |
| CACTTGAATGATAGGACTCC+TGG | - | chr5_2:74374127-74374146 | None:intergenic | 45.0% | |
| CAGGAGTCCTATCATTCAAG+TGG | + | chr5_2:74374125-74374144 | Msa0788060:CDS | 45.0% | |
| ! | TCCTCGGTTTTCTCTTACAG+TGG | + | chr5_2:74374185-74374204 | Msa0788060:CDS | 45.0% |
| ACCACTGTAAGAGAAAACCG+AGG | - | chr5_2:74374189-74374208 | None:intergenic | 45.0% | |
| ! | GGTTTTCTCTTACAGTGGTC+AGG | + | chr5_2:74374190-74374209 | Msa0788060:CDS | 45.0% |
| ! | GTAGTCTTACCCTAATGCCA+AGG | - | chr5_2:74374218-74374237 | None:intergenic | 45.0% |
| ! | ACCTGTGTTATTCTGTTGGG+AGG | + | chr5_2:74374410-74374429 | Msa0788060:CDS | 45.0% |
| CTGTTATTCGACTCAGATCC+AGG | + | chr5_2:74374437-74374456 | Msa0788060:CDS | 45.0% | |
| TGTTGCTCTCACTGGAATGT+CGG | + | chr5_2:74374484-74374503 | Msa0788060:CDS | 45.0% | |
| !!! | GCTGGTTTTTGCTGTGTTGA+AGG | - | chr5_2:74374578-74374597 | None:intergenic | 45.0% |
| ACAAAGATATTGCGGACCAG+TGG | + | chr5_2:74372583-74372602 | Msa0788060:CDS | 45.0% | |
| TTGAAGGATAATGCGACCAC+TGG | - | chr5_2:74372602-74372621 | None:intergenic | 45.0% | |
| !! | TGATAGGTGATGGGAAGAGT+TGG | + | chr5_2:74372770-74372789 | Msa0788060:intron | 45.0% |
| !! | GTTTTAGATGGAGGAGACAC+AGG | - | chr5_2:74372881-74372900 | None:intergenic | 45.0% |
| ! | GCTGTTATGGCTTTTGCATC+TGG | + | chr5_2:74372932-74372951 | Msa0788060:intron | 45.0% |
| ACACCAGCCTCAAGTATAAC+AGG | + | chr5_2:74372963-74372982 | Msa0788060:intron | 45.0% | |
| GAACCTGTTATACTTGAGGC+TGG | - | chr5_2:74372969-74372988 | None:intergenic | 45.0% | |
| CAGTTCAGTTCATGCAGTGT+TGG | + | chr5_2:74373564-74373583 | Msa0788060:intron | 45.0% | |
| TGTAGCAGTTGCAACTGTGT+CGG | + | chr5_2:74373836-74373855 | Msa0788060:CDS | 45.0% | |
| ! | TTCTAGGAGCTTTGATGCCT+TGG | + | chr5_2:74374092-74374111 | Msa0788060:CDS | 45.0% |
| TTGAATGATAGGACTCCTGG+TGG | - | chr5_2:74374124-74374143 | None:intergenic | 45.0% | |
| CACTTGAATGATAGGACTCC+TGG | - | chr5_2:74374127-74374146 | None:intergenic | 45.0% | |
| CAGGAGTCCTATCATTCAAG+TGG | + | chr5_2:74374125-74374144 | Msa0788060:CDS | 45.0% | |
| ! | TCCTCGGTTTTCTCTTACAG+TGG | + | chr5_2:74374185-74374204 | Msa0788060:CDS | 45.0% |
| ACCACTGTAAGAGAAAACCG+AGG | - | chr5_2:74374189-74374208 | None:intergenic | 45.0% | |
| ! | GGTTTTCTCTTACAGTGGTC+AGG | + | chr5_2:74374190-74374209 | Msa0788060:CDS | 45.0% |
| ! | GTAGTCTTACCCTAATGCCA+AGG | - | chr5_2:74374218-74374237 | None:intergenic | 45.0% |
| ! | ACCTGTGTTATTCTGTTGGG+AGG | + | chr5_2:74374410-74374429 | Msa0788060:CDS | 45.0% |
| CTGTTATTCGACTCAGATCC+AGG | + | chr5_2:74374437-74374456 | Msa0788060:CDS | 45.0% | |
| TGTTGCTCTCACTGGAATGT+CGG | + | chr5_2:74374484-74374503 | Msa0788060:CDS | 45.0% | |
| !!! | GCTGGTTTTTGCTGTGTTGA+AGG | - | chr5_2:74374578-74374597 | None:intergenic | 45.0% |
| CTACAATGAGCTCCGAACCT+CGG | + | chr5_2:74372541-74372560 | Msa0788060:CDS | 50.0% | |
| ! | GGTTGCTGTTGGGATCATCA+TGG | + | chr5_2:74372628-74372647 | Msa0788060:CDS | 50.0% |
| GCAAGGAAACTGGACAGCTT+TGG | + | chr5_2:74373950-74373969 | Msa0788060:CDS | 50.0% | |
| ATGCCTTGGATTGATCCACC+AGG | + | chr5_2:74374106-74374125 | Msa0788060:CDS | 50.0% | |
| ! | ACTCCTGGTGGATCAATCCA+AGG | - | chr5_2:74374112-74374131 | None:intergenic | 50.0% |
| GCCTCCCAACAGAATAACAC+AGG | - | chr5_2:74374414-74374433 | None:intergenic | 50.0% | |
| GATCCAGGGATTGTGAGCAT+TGG | + | chr5_2:74374452-74374471 | Msa0788060:CDS | 50.0% | |
| CTACAATGAGCTCCGAACCT+CGG | + | chr5_2:74372541-74372560 | Msa0788060:CDS | 50.0% | |
| ! | GGTTGCTGTTGGGATCATCA+TGG | + | chr5_2:74372628-74372647 | Msa0788060:CDS | 50.0% |
| GCAAGGAAACTGGACAGCTT+TGG | + | chr5_2:74373950-74373969 | Msa0788060:CDS | 50.0% | |
| ATGCCTTGGATTGATCCACC+AGG | + | chr5_2:74374106-74374125 | Msa0788060:CDS | 50.0% | |
| ! | ACTCCTGGTGGATCAATCCA+AGG | - | chr5_2:74374112-74374131 | None:intergenic | 50.0% |
| GCCTCCCAACAGAATAACAC+AGG | - | chr5_2:74374414-74374433 | None:intergenic | 50.0% | |
| GATCCAGGGATTGTGAGCAT+TGG | + | chr5_2:74374452-74374471 | Msa0788060:CDS | 50.0% | |
| AATGAGCTCCGAACCTCGGA+AGG | + | chr5_2:74372545-74372564 | Msa0788060:CDS | 55.0% | |
| CAGCAGCCAAAGCCAAAACC+TGG | - | chr5_2:74373806-74373825 | None:intergenic | 55.0% | |
| GCTTTGGCTGCTGTATCAGC+TGG | + | chr5_2:74373813-74373832 | Msa0788060:CDS | 55.0% | |
| CTTACAGTGGTCAGGTGCCT+TGG | + | chr5_2:74374198-74374217 | Msa0788060:CDS | 55.0% | |
| TGGTCAGGTGCCTTGGCATT+AGG | + | chr5_2:74374205-74374224 | Msa0788060:CDS | 55.0% | |
| GGTCAGGTGCCTTGGCATTA+GGG | + | chr5_2:74374206-74374225 | Msa0788060:CDS | 55.0% | |
| !! | CCAGGGATTGTGAGCATTGG+CGG | + | chr5_2:74374455-74374474 | Msa0788060:CDS | 55.0% |
| !! | GATTGTGAGCATTGGCGGAG+CGG | + | chr5_2:74374460-74374479 | Msa0788060:CDS | 55.0% |
| AATGAGCTCCGAACCTCGGA+AGG | + | chr5_2:74372545-74372564 | Msa0788060:CDS | 55.0% | |
| CAGCAGCCAAAGCCAAAACC+TGG | - | chr5_2:74373806-74373825 | None:intergenic | 55.0% | |
| GCTTTGGCTGCTGTATCAGC+TGG | + | chr5_2:74373813-74373832 | Msa0788060:CDS | 55.0% | |
| CTTACAGTGGTCAGGTGCCT+TGG | + | chr5_2:74374198-74374217 | Msa0788060:CDS | 55.0% | |
| TGGTCAGGTGCCTTGGCATT+AGG | + | chr5_2:74374205-74374224 | Msa0788060:CDS | 55.0% | |
| GGTCAGGTGCCTTGGCATTA+GGG | + | chr5_2:74374206-74374225 | Msa0788060:CDS | 55.0% | |
| !! | CCAGGGATTGTGAGCATTGG+CGG | + | chr5_2:74374455-74374474 | Msa0788060:CDS | 55.0% |
| !! | GATTGTGAGCATTGGCGGAG+CGG | + | chr5_2:74374460-74374479 | Msa0788060:CDS | 55.0% |
| GCTTGGCTCCTTCCGAGGTT+CGG | - | chr5_2:74372556-74372575 | None:intergenic | 60.0% | |
| CCGCCAATGCTCACAATCCC+TGG | - | chr5_2:74374458-74374477 | None:intergenic | 60.0% | |
| GGAGCGGTTGTTGCTCTCAC+TGG | + | chr5_2:74374476-74374495 | Msa0788060:CDS | 60.0% | |
| GCTTGGCTCCTTCCGAGGTT+CGG | - | chr5_2:74372556-74372575 | None:intergenic | 60.0% | |
| CCGCCAATGCTCACAATCCC+TGG | - | chr5_2:74374458-74374477 | None:intergenic | 60.0% | |
| GGAGCGGTTGTTGCTCTCAC+TGG | + | chr5_2:74374476-74374495 | Msa0788060:CDS | 60.0% | |
| TTGGCGCTTGGCTCCTTCCG+AGG | - | chr5_2:74372561-74372580 | None:intergenic | 65.0% | |
| TTGGCGCTTGGCTCCTTCCG+AGG | - | chr5_2:74372561-74372580 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 74372506 | 74374815 | 74372506 | ID=Msa0788060;Name=Msa0788060 |
| chr5_2 | mRNA | 74372506 | 74374815 | 74372506 | ID=Msa0788060-mRNA-1;Parent=Msa0788060;Name=Msa0788060-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.8|0.5|1|1|1|6|160|349 |
| chr5_2 | exon | 74372506 | 74372661 | 74372506 | ID=Msa0788060-mRNA-1:exon:22669;Parent=Msa0788060-mRNA-1 |
| chr5_2 | exon | 74372776 | 74372934 | 74372776 | ID=Msa0788060-mRNA-1:exon:22670;Parent=Msa0788060-mRNA-1 |
| chr5_2 | exon | 74373567 | 74373674 | 74373567 | ID=Msa0788060-mRNA-1:exon:22671;Parent=Msa0788060-mRNA-1 |
| chr5_2 | exon | 74373807 | 74373973 | 74373807 | ID=Msa0788060-mRNA-1:exon:22672;Parent=Msa0788060-mRNA-1 |
| chr5_2 | exon | 74374057 | 74374227 | 74374057 | ID=Msa0788060-mRNA-1:exon:22673;Parent=Msa0788060-mRNA-1 |
| chr5_2 | exon | 74374367 | 74374815 | 74374367 | ID=Msa0788060-mRNA-1:exon:22674;Parent=Msa0788060-mRNA-1 |
| chr5_2 | CDS | 74372506 | 74372661 | 74372506 | ID=Msa0788060-mRNA-1:cds;Parent=Msa0788060-mRNA-1 |
| chr5_2 | CDS | 74372776 | 74372934 | 74372776 | ID=Msa0788060-mRNA-1:cds;Parent=Msa0788060-mRNA-1 |
| chr5_2 | CDS | 74373567 | 74373674 | 74373567 | ID=Msa0788060-mRNA-1:cds;Parent=Msa0788060-mRNA-1 |
| chr5_2 | CDS | 74373807 | 74373973 | 74373807 | ID=Msa0788060-mRNA-1:cds;Parent=Msa0788060-mRNA-1 |
| chr5_2 | CDS | 74374057 | 74374227 | 74374057 | ID=Msa0788060-mRNA-1:cds;Parent=Msa0788060-mRNA-1 |
| chr5_2 | CDS | 74374367 | 74374655 | 74374367 | ID=Msa0788060-mRNA-1:cds;Parent=Msa0788060-mRNA-1 |
| chr5_2 | three_prime_UTR | 74374656 | 74374815 | 74374656 | ID=Msa0788060-mRNA-1:three_prime_utr;Parent=Msa0788060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
