Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825230 | XP_003617863.2 | 98.711 | 388 | 2 | 1 | 1 | 388 | 1 | 385 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825230 | sp|Q9FG70|NSTU2_ARATH | 79.255 | 376 | 72 | 3 | 1 | 373 | 1 | 373 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825230 | G7KEK1 | 98.711 | 388 | 2 | 1 | 1 | 388 | 1 | 385 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0118570 | Msa0825230 | 0.803400 | 3.549529e-49 | -8.615850e-47 |
| Msa0650070 | Msa0825230 | 0.813057 | 3.103389e-51 | -8.615850e-47 |
| Msa0684500 | Msa0825230 | 0.810956 | 8.904534e-51 | -8.615850e-47 |
| Msa0744160 | Msa0825230 | 0.866621 | 2.493473e-65 | -8.615850e-47 |
| Msa0757950 | Msa0825230 | 0.827205 | 1.779568e-54 | -8.615850e-47 |
| Msa0788060 | Msa0825230 | 0.896437 | 3.692879e-76 | -8.615850e-47 |
| Msa0795390 | Msa0825230 | 0.804600 | 1.998873e-49 | -8.615850e-47 |
| Msa0810480 | Msa0825230 | 0.828674 | 7.886009e-55 | -8.615850e-47 |
| Msa0825230 | Msa0864460 | 0.860422 | 2.088967e-63 | -8.615850e-47 |
| Msa0825230 | Msa1269080 | 0.823110 | 1.652638e-53 | -8.615850e-47 |
| Msa0825230 | Msa1460390 | 0.804430 | 2.168963e-49 | -8.615850e-47 |
| Msa0136080 | Msa0825230 | 0.819499 | 1.124832e-52 | -8.615850e-47 |
| Msa0136110 | Msa0825230 | 0.816946 | 4.255286e-52 | -8.615850e-47 |
| Msa0154320 | Msa0825230 | 0.806208 | 9.197992e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825230 | MtrunA17_Chr5g0446851 | 98.711 | 388 | 2 | 1 | 1 | 388 | 1 | 385 | 0.0 | 768 |
| Msa0825230 | MtrunA17_Chr2g0298931 | 60.477 | 377 | 142 | 4 | 3 | 376 | 1 | 373 | 5.65e-166 | 469 |
| Msa0825230 | MtrunA17_Chr2g0326791 | 29.429 | 350 | 216 | 6 | 55 | 383 | 10 | 349 | 6.40e-38 | 139 |
| Msa0825230 | MtrunA17_Chr6g0467391 | 30.293 | 307 | 200 | 4 | 55 | 357 | 10 | 306 | 1.18e-36 | 135 |
| Msa0825230 | MtrunA17_Chr6g0467371 | 30.293 | 307 | 200 | 4 | 55 | 357 | 10 | 306 | 1.18e-36 | 135 |
| Msa0825230 | MtrunA17_Chr4g0028931 | 27.246 | 345 | 219 | 4 | 55 | 374 | 10 | 347 | 2.82e-35 | 132 |
| Msa0825230 | MtrunA17_Chr3g0128961 | 26.163 | 344 | 210 | 6 | 73 | 388 | 28 | 355 | 2.16e-31 | 122 |
| Msa0825230 | MtrunA17_Chr3g0128951 | 28.065 | 310 | 201 | 5 | 73 | 376 | 28 | 321 | 5.48e-31 | 120 |
| Msa0825230 | MtrunA17_Chr3g0129401 | 28.662 | 314 | 204 | 8 | 62 | 368 | 20 | 320 | 1.49e-26 | 108 |
| Msa0825230 | MtrunA17_Chr1g0157501 | 32.298 | 322 | 202 | 6 | 59 | 372 | 15 | 328 | 3.21e-26 | 107 |
| Msa0825230 | MtrunA17_Chr5g0393381 | 31.529 | 314 | 200 | 7 | 63 | 368 | 21 | 327 | 5.12e-26 | 107 |
| Msa0825230 | MtrunA17_Chr1g0201531 | 27.124 | 306 | 201 | 5 | 46 | 341 | 4 | 297 | 9.40e-24 | 100 |
| Msa0825230 | MtrunA17_Chr8g0383381 | 26.888 | 331 | 216 | 6 | 62 | 378 | 20 | 338 | 1.07e-20 | 92.0 |
| Msa0825230 | MtrunA17_Chr3g0114581 | 23.364 | 321 | 224 | 6 | 68 | 376 | 27 | 337 | 6.43e-17 | 81.3 |
| Msa0825230 | MtrunA17_Chr1g0160071 | 22.018 | 327 | 233 | 6 | 68 | 386 | 26 | 338 | 2.50e-15 | 76.6 |
| Msa0825230 | MtrunA17_Chr8g0382081 | 29.452 | 292 | 174 | 10 | 68 | 341 | 24 | 301 | 1.13e-11 | 65.1 |
| Msa0825230 | MtrunA17_Chr4g0056661 | 25.965 | 285 | 195 | 8 | 68 | 342 | 65 | 343 | 1.60e-11 | 65.1 |
| Msa0825230 | MtrunA17_Chr2g0312911 | 25.545 | 321 | 205 | 14 | 69 | 369 | 24 | 330 | 1.66e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825230 | AT5G55950.1 | 79.255 | 376 | 72 | 3 | 1 | 373 | 1 | 373 | 0.0 | 603 |
| Msa0825230 | AT5G55950.2 | 85.034 | 294 | 40 | 2 | 1 | 293 | 1 | 291 | 0.0 | 509 |
| Msa0825230 | AT5G55950.4 | 78.165 | 316 | 64 | 2 | 60 | 373 | 1 | 313 | 1.35e-175 | 493 |
| Msa0825230 | AT5G55950.3 | 77.852 | 298 | 61 | 2 | 78 | 373 | 1 | 295 | 2.87e-164 | 463 |
| Msa0825230 | AT5G57100.1 | 64.327 | 342 | 116 | 2 | 7 | 345 | 12 | 350 | 1.37e-159 | 454 |
| Msa0825230 | AT5G57100.2 | 64.138 | 290 | 98 | 2 | 7 | 293 | 12 | 298 | 7.93e-134 | 385 |
| Msa0825230 | AT5G57100.3 | 62.232 | 233 | 82 | 2 | 7 | 236 | 12 | 241 | 3.39e-100 | 298 |
| Msa0825230 | AT5G57100.4 | 62.996 | 227 | 84 | 0 | 150 | 376 | 40 | 266 | 4.21e-95 | 286 |
| Msa0825230 | AT2G30460.1 | 32.143 | 336 | 185 | 9 | 73 | 377 | 28 | 351 | 5.24e-40 | 145 |
| Msa0825230 | AT2G30460.2 | 32.143 | 336 | 185 | 9 | 73 | 377 | 28 | 351 | 5.24e-40 | 145 |
| Msa0825230 | AT1G06890.4 | 32.174 | 345 | 202 | 10 | 43 | 373 | 2 | 328 | 3.61e-39 | 143 |
| Msa0825230 | AT1G06890.3 | 32.174 | 345 | 202 | 10 | 43 | 373 | 2 | 328 | 4.73e-39 | 143 |
| Msa0825230 | AT1G06890.2 | 32.174 | 345 | 202 | 10 | 43 | 373 | 2 | 328 | 5.36e-39 | 143 |
| Msa0825230 | AT1G06890.1 | 32.174 | 345 | 202 | 10 | 43 | 373 | 2 | 328 | 5.36e-39 | 143 |
| Msa0825230 | AT2G30460.3 | 32.484 | 314 | 175 | 8 | 95 | 377 | 23 | 330 | 1.55e-38 | 141 |
| Msa0825230 | AT2G30460.6 | 32.484 | 314 | 175 | 8 | 95 | 377 | 23 | 330 | 1.55e-38 | 141 |
| Msa0825230 | AT2G30460.5 | 32.484 | 314 | 175 | 8 | 95 | 377 | 23 | 330 | 1.55e-38 | 141 |
| Msa0825230 | AT2G28315.1 | 29.605 | 304 | 201 | 4 | 45 | 344 | 2 | 296 | 2.09e-33 | 127 |
| Msa0825230 | AT2G28315.2 | 29.747 | 316 | 206 | 5 | 45 | 356 | 2 | 305 | 7.00e-33 | 125 |
| Msa0825230 | AT5G42420.1 | 31.657 | 338 | 214 | 6 | 59 | 384 | 18 | 350 | 1.61e-29 | 117 |
| Msa0825230 | AT1G21070.1 | 30.178 | 338 | 217 | 7 | 59 | 385 | 18 | 347 | 1.05e-28 | 115 |
| Msa0825230 | AT4G09810.1 | 26.765 | 340 | 228 | 8 | 47 | 376 | 5 | 333 | 8.12e-28 | 112 |
| Msa0825230 | AT1G76670.2 | 29.345 | 351 | 231 | 6 | 44 | 383 | 2 | 346 | 4.27e-27 | 110 |
| Msa0825230 | AT1G76670.1 | 29.345 | 351 | 231 | 6 | 44 | 383 | 2 | 346 | 4.27e-27 | 110 |
| Msa0825230 | AT1G34020.2 | 26.769 | 325 | 217 | 8 | 62 | 376 | 20 | 333 | 2.30e-26 | 108 |
| Msa0825230 | AT1G34020.1 | 26.769 | 325 | 217 | 8 | 62 | 376 | 20 | 333 | 2.30e-26 | 108 |
| Msa0825230 | AT1G34020.3 | 26.769 | 325 | 217 | 8 | 62 | 376 | 20 | 333 | 2.30e-26 | 108 |
| Msa0825230 | AT2G30460.4 | 31.527 | 203 | 118 | 6 | 73 | 266 | 28 | 218 | 4.70e-22 | 96.7 |
| Msa0825230 | AT4G39390.1 | 26.393 | 341 | 235 | 7 | 41 | 376 | 4 | 333 | 2.04e-20 | 91.7 |
| Msa0825230 | AT4G39390.2 | 26.393 | 341 | 235 | 7 | 41 | 376 | 4 | 333 | 2.04e-20 | 91.7 |
| Msa0825230 | AT4G39390.3 | 26.627 | 338 | 232 | 7 | 43 | 375 | 2 | 328 | 4.32e-20 | 90.9 |
| Msa0825230 | AT4G09810.2 | 26.429 | 280 | 188 | 7 | 107 | 376 | 5 | 276 | 5.25e-19 | 86.7 |
| Msa0825230 | AT1G77610.1 | 24.233 | 326 | 223 | 6 | 68 | 385 | 21 | 330 | 6.79e-19 | 87.4 |
| Msa0825230 | AT1G21870.1 | 23.242 | 327 | 227 | 6 | 68 | 386 | 27 | 337 | 1.01e-17 | 84.0 |
| Msa0825230 | AT4G09810.3 | 28.436 | 211 | 144 | 3 | 47 | 257 | 5 | 208 | 3.44e-17 | 80.5 |
| Msa0825230 | AT1G53660.1 | 27.848 | 316 | 196 | 14 | 69 | 369 | 30 | 328 | 2.06e-12 | 68.2 |
| Msa0825230 | AT1G53660.3 | 27.848 | 316 | 196 | 14 | 69 | 369 | 48 | 346 | 2.24e-12 | 68.2 |
| Msa0825230 | AT1G53660.4 | 27.393 | 303 | 190 | 13 | 80 | 369 | 9 | 294 | 9.09e-12 | 65.9 |
| Msa0825230 | AT3G14410.1 | 27.812 | 320 | 196 | 15 | 69 | 367 | 28 | 333 | 7.69e-11 | 63.5 |
Find 98 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTGTTCAAGATTATTT+TGG | 0.130147 | 5_3:+64953884 | Msa0825230:three_prime_UTR |
| AACAGAATTGCAAAGGTAAA+AGG | 0.185056 | 5_3:-64950945 | None:intergenic |
| GTGCTATAGTTGCAATTATA+TGG | 0.196565 | 5_3:+64952975 | Msa0825230:CDS |
| TGAACAAATGTGAGGAAAAT+TGG | 0.206523 | 5_3:-64951992 | None:intergenic |
| TTACCTTTGCAATTCTGTTT+TGG | 0.215267 | 5_3:+64950949 | Msa0825230:five_prime_UTR |
| ATGAATAAGCTTGGTTGTTA+TGG | 0.217104 | 5_3:+64951061 | Msa0825230:exon |
| GATTTAGAGTTCAATTTATT+TGG | 0.233562 | 5_3:+64952953 | Msa0825230:CDS |
| CAATTTCTTCAAACACTATT+AGG | 0.235582 | 5_3:+64953788 | Msa0825230:three_prime_UTR |
| CAAACACTATTAGGCAATTC+AGG | 0.243025 | 5_3:+64953797 | Msa0825230:three_prime_UTR |
| CGCATTATCCTTCAACTTCA+TGG | 0.275264 | 5_3:+64951796 | Msa0825230:CDS |
| CTAATAGTGTTTGAAGAAAT+TGG | 0.275518 | 5_3:-64953787 | None:intergenic |
| TTCTAGGAGCTTTGATGCCT+TGG | 0.276040 | 5_3:+64953187 | Msa0825230:CDS |
| TGGTCAGGTGCCTTGGCATT+AGG | 0.292303 | 5_3:+64953300 | Msa0825230:CDS |
| ATTTGCACTTGGTGCTGTTA+TGG | 0.295321 | 5_3:+64952108 | Msa0825230:CDS |
| TGAATAAGCTTGGTTGTTAT+GGG | 0.334932 | 5_3:+64951062 | Msa0825230:exon |
| CTTGGTTGTTATGGGGTTGT+TGG | 0.351383 | 5_3:+64951070 | Msa0825230:exon |
| GACAGTGATGCAGGAGAAAC+AGG | 0.365115 | 5_3:+64951134 | Msa0825230:CDS |
| GGTCAGGTGCCTTGGCATTA+GGG | 0.373196 | 5_3:+64953301 | Msa0825230:CDS |
| GATCATCATGGCAAACAAAT+TGG | 0.383428 | 5_3:+64951829 | Msa0825230:CDS |
| GTCCGCAATATCTTTGTTGT+TGG | 0.384372 | 5_3:-64951766 | None:intergenic |
| GAACAAATGTGAGGAAAATT+GGG | 0.386839 | 5_3:-64951991 | None:intergenic |
| AAGACCTGTGTTATTCTGTT+GGG | 0.387128 | 5_3:+64953502 | Msa0825230:CDS |
| GGGTTGTTGGATTCACTGTT+GGG | 0.388784 | 5_3:+64951083 | Msa0825230:CDS |
| ATTTACAGCAGCAAGGAAAC+TGG | 0.392992 | 5_3:+64953035 | Msa0825230:CDS |
| ATAACAACCAAGCTTATTCA+TGG | 0.395103 | 5_3:-64951059 | None:intergenic |
| TGTTACTCCAACAATTGTTC+TGG | 0.395251 | 5_3:+64952706 | Msa0825230:CDS |
| ATATCTTTGTTGTTGGCGCT+TGG | 0.395651 | 5_3:-64951759 | None:intergenic |
| TTCAACTTCATGGTTGCTGT+TGG | 0.397088 | 5_3:+64951806 | Msa0825230:CDS |
| TCAACTTCATGGTTGCTGTT+GGG | 0.398882 | 5_3:+64951807 | Msa0825230:CDS |
| CTGTTATTCGACTCAGATCC+GGG | 0.403312 | 5_3:+64953532 | Msa0825230:CDS |
| GCTTGGCTCCTTCCGAGGTT+CGG | 0.411178 | 5_3:-64951742 | None:intergenic |
| CCTAGAAAGAAAACTGTGAT+AGG | 0.412694 | 5_3:-64953171 | None:intergenic |
| GGGGTTGTTGGATTCACTGT+TGG | 0.413369 | 5_3:+64951082 | Msa0825230:CDS |
| CAAATACAATCAATCAATCT+TGG | 0.417897 | 5_3:-64950887 | None:intergenic |
| ACACCAGCCTCAAGTATAAC+AGG | 0.419149 | 5_3:+64952152 | Msa0825230:CDS |
| TAACAGCAATCTTAGCCATT+TGG | 0.422409 | 5_3:-64952688 | None:intergenic |
| AACTCTGCCAGAACAATTGT+TGG | 0.424008 | 5_3:-64952713 | None:intergenic |
| CTTACAGTGGTCAGGTGCCT+TGG | 0.424187 | 5_3:+64953293 | Msa0825230:CDS |
| GGAGCGGTTGTTGCTCTCAC+TGG | 0.441079 | 5_3:+64953571 | Msa0825230:CDS |
| TCAGACAACAATGTTATTGT+TGG | 0.442813 | 5_3:-64953728 | None:intergenic |
| TCTTTGTTGTCTTCACTAGC+TGG | 0.443142 | 5_3:-64953688 | None:intergenic |
| CAGTGTTGGTTTCTACCAAA+TGG | 0.447856 | 5_3:+64952673 | Msa0825230:CDS |
| GCTTTGGCTGCTGTATCAGC+TGG | 0.447867 | 5_3:+64952908 | Msa0825230:CDS |
| CAGTTCAGTTCATGCAGTGT+TGG | 0.449065 | 5_3:+64952659 | Msa0825230:intron |
| TTCTCTTCTATATTTGCACT+TGG | 0.450424 | 5_3:+64952097 | Msa0825230:CDS |
| CCGGGGATTGTGAGCATTGG+TGG | 0.458301 | 5_3:+64953550 | Msa0825230:CDS |
| GCAAGGAAACTGGACAGCTT+TGG | 0.461956 | 5_3:+64953045 | Msa0825230:CDS |
| TCTGTTATTCGACTCAGATC+CGG | 0.468414 | 5_3:+64953531 | Msa0825230:CDS |
| TAAGACCTGTGTTATTCTGT+TGG | 0.483155 | 5_3:+64953501 | Msa0825230:CDS |
| TGTTGCTCTCACTGGAATGT+CGG | 0.489922 | 5_3:+64953579 | Msa0825230:CDS |
| AAAAGAAAAGACAGTGATGC+AGG | 0.490754 | 5_3:+64951125 | Msa0825230:CDS |
| GTGTTTGAAGAAATTGGTTG+TGG | 0.496407 | 5_3:-64953781 | None:intergenic |
| TAATGTCCATTCTTCAAAGA+GGG | 0.496413 | 5_3:-64950846 | None:intergenic |
| ACAGAATTGCAAAGGTAAAA+GGG | 0.500226 | 5_3:-64950944 | None:intergenic |
| TTGGATTCACTGTTGGGAGA+TGG | 0.510806 | 5_3:+64951089 | Msa0825230:CDS |
| CACTTGAACGATAGGACTCC+TGG | 0.514349 | 5_3:-64953219 | None:intergenic |
| CCACCAATGCTCACAATCCC+CGG | 0.514520 | 5_3:-64953550 | None:intergenic |
| AGTGCAAATATAGAAGAGAA+TGG | 0.515498 | 5_3:-64952094 | None:intergenic |
| AACAGCAACCATGAAGTTGA+AGG | 0.516911 | 5_3:-64951804 | None:intergenic |
| GTTGAAGGCAAACTATGCTT+CGG | 0.526876 | 5_3:-64953655 | None:intergenic |
| TGATTGTATTTGAAGCAACT+TGG | 0.527292 | 5_3:+64950898 | Msa0825230:five_prime_UTR |
| CAGTTGTTTGTTGTATGACA+AGG | 0.530184 | 5_3:-64950686 | None:intergenic |
| TTGGCGCTTGGCTCCTTCCG+AGG | 0.534697 | 5_3:-64951747 | None:intergenic |
| TTACATCCCACTTGAACGAT+AGG | 0.535989 | 5_3:-64953227 | None:intergenic |
| GATCCGGGGATTGTGAGCAT+TGG | 0.543162 | 5_3:+64953547 | Msa0825230:CDS |
| AAAATTATCAGGTAAAGCAC+TGG | 0.545102 | 5_3:+64951688 | Msa0825230:intron |
| CTTTATTGTTGATAGGTGAT+GGG | 0.545367 | 5_3:+64951950 | Msa0825230:intron |
| TGATAGGTGATGGGAAGAGT+TGG | 0.547749 | 5_3:+64951959 | Msa0825230:intron |
| TTTCTTATTGTAGATTGATG+TGG | 0.552469 | 5_3:+64953139 | Msa0825230:intron |
| ACCTGTGTTATTCTGTTGGG+AGG | 0.560653 | 5_3:+64953505 | Msa0825230:CDS |
| AATGAGCTCCGAACCTCGGA+AGG | 0.566484 | 5_3:+64951734 | Msa0825230:CDS |
| TCTAAGTCCATGAATAAGCT+TGG | 0.571479 | 5_3:+64951052 | Msa0825230:five_prime_UTR |
| TTGTTCACTACATCACTGCA+TGG | 0.573296 | 5_3:+64952008 | Msa0825230:CDS |
| GATTGTGAGCATTGGTGGAG+CGG | 0.576911 | 5_3:+64953555 | Msa0825230:CDS |
| CAGGAGTCCTATCGTTCAAG+TGG | 0.580733 | 5_3:+64953220 | Msa0825230:CDS |
| TGGTCTAATTTACAGCAGCA+AGG | 0.584781 | 5_3:+64953028 | Msa0825230:CDS |
| AATGTCCATTCTTCAAAGAG+GGG | 0.585761 | 5_3:-64950845 | None:intergenic |
| ATAATGTCCATTCTTCAAAG+AGG | 0.589546 | 5_3:-64950847 | None:intergenic |
| TTGAAGGATAATGCGACCAC+TGG | 0.591814 | 5_3:-64951788 | None:intergenic |
| CTACAATGAGCTCCGAACCT+CGG | 0.592720 | 5_3:+64951730 | Msa0825230:CDS |
| CGCCAACAACAAAGATATTG+CGG | 0.594240 | 5_3:+64951764 | Msa0825230:CDS |
| ATGCCTTGGATTGATCCACC+AGG | 0.606051 | 5_3:+64953201 | Msa0825230:CDS |
| AAGCCAAAACAGAATTGCAA+AGG | 0.611250 | 5_3:-64950952 | None:intergenic |
| GGACCTGTTATACTTGAGGC+TGG | 0.619909 | 5_3:-64952155 | None:intergenic |
| ACATGGACCTGTTATACTTG+AGG | 0.625521 | 5_3:-64952159 | None:intergenic |
| GAATAAGCTTGGTTGTTATG+GGG | 0.629040 | 5_3:+64951063 | Msa0825230:exon |
| AAAGTGCCTTGAAAATTGCA+AGG | 0.638843 | 5_3:-64952036 | None:intergenic |
| ACTCCTGGTGGATCAATCCA+AGG | 0.644949 | 5_3:-64953204 | None:intergenic |
| GTAGTCTTACCCTAATGCCA+AGG | 0.645323 | 5_3:-64953310 | None:intergenic |
| TGTAGCAGTTGCAACTGTGT+CGG | 0.648797 | 5_3:+64952931 | Msa0825230:CDS |
| GCCTCCCAACAGAATAACAC+AGG | 0.658463 | 5_3:-64953506 | None:intergenic |
| AGGAGTCCTATCGTTCAAGT+GGG | 0.665530 | 5_3:+64953221 | Msa0825230:CDS |
| GGTTGCTGTTGGGATCATCA+TGG | 0.682153 | 5_3:+64951817 | Msa0825230:CDS |
| TGTTATTCGACTCAGATCCG+GGG | 0.684228 | 5_3:+64953533 | Msa0825230:CDS |
| ACAAAGATATTGCGGACCAG+TGG | 0.685300 | 5_3:+64951772 | Msa0825230:CDS |
| TGATGTAGTGAACAAATGTG+AGG | 0.721156 | 5_3:-64952000 | None:intergenic |
| TTGAACGATAGGACTCCTGG+TGG | 0.739730 | 5_3:-64953216 | None:intergenic |
| ACCACTGTAAGAGAAAACCA+AGG | 0.762630 | 5_3:-64953281 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTGTTTTTTCAAATTT+TGG | + | chr5_3:64951392-64951411 | Msa0825230:intron | 15.0% |
| !! | AAATATGAAATATTCTTTAG+AGG | - | chr5_3:64951513-64951532 | None:intergenic | 15.0% |
| !! | ATTATATGATTCAATTATGA+TGG | - | chr5_3:64951612-64951631 | None:intergenic | 15.0% |
| !! | TATAAACCATTTCAAATATA+TGG | + | chr5_3:64952810-64952829 | Msa0825230:intron | 15.0% |
| !!! | AGACCATAAAATTTTATTTA+TGG | - | chr5_3:64953014-64953033 | None:intergenic | 15.0% |
| !!! | TAATTTTACAAAAGAGAAAT+TGG | - | chr5_3:64953093-64953112 | None:intergenic | 15.0% |
| !!! | AAATTTGTTCAAGATTATTT+TGG | + | chr5_3:64953884-64953903 | Msa0825230:three_prime_UTR | 15.0% |
| !!! | TATTTGTTATGCTAAGAATA+AGG | + | chr5_3:64951419-64951438 | Msa0825230:intron | 20.0% |
| !!! | ATACTTAATCTTTTATTGCT+TGG | - | chr5_3:64951487-64951506 | None:intergenic | 20.0% |
| !! | AATATAAACCAATGAAAGTA+GGG | - | chr5_3:64951584-64951603 | None:intergenic | 20.0% |
| !! | AAATATAAACCAATGAAAGT+AGG | - | chr5_3:64951585-64951604 | None:intergenic | 20.0% |
| !! | GATATAACTTTATTGTTGAT+AGG | + | chr5_3:64951943-64951962 | Msa0825230:intron | 20.0% |
| !! | TTGGTATGAAAAATAAACAA+AGG | - | chr5_3:64952224-64952243 | None:intergenic | 20.0% |
| !! | TTAAAAGTCAATGACTAATT+TGG | - | chr5_3:64952243-64952262 | None:intergenic | 20.0% |
| !! | ATGTTTCAAATTTGAAAATG+TGG | + | chr5_3:64952316-64952335 | Msa0825230:intron | 20.0% |
| !! | GTATAATTTATTTCCTTGAA+TGG | + | chr5_3:64952456-64952475 | Msa0825230:intron | 20.0% |
| !! | CATAGATGAAAAATTAAGTT+TGG | + | chr5_3:64952503-64952522 | Msa0825230:intron | 20.0% |
| !! | AAAAACCATTTCTTCAAAAA+AGG | + | chr5_3:64952748-64952767 | Msa0825230:CDS | 20.0% |
| !!! | TCTTTTCCATATATTTGAAA+TGG | - | chr5_3:64952819-64952838 | None:intergenic | 20.0% |
| !! | GTGCATAAAAAATAATTGTA+TGG | - | chr5_3:64952848-64952867 | None:intergenic | 20.0% |
| !!! | GATTTAGAGTTCAATTTATT+TGG | + | chr5_3:64952953-64952972 | Msa0825230:CDS | 20.0% |
| !!! | AAAATTTTATTTATGGCACT+TGG | - | chr5_3:64953007-64953026 | None:intergenic | 20.0% |
| !!! | GTGCCATAAATAAAATTTTA+TGG | + | chr5_3:64953008-64953027 | Msa0825230:CDS | 20.0% |
| !! | ATATTATTATCAATCAATGC+AGG | + | chr5_3:64953440-64953459 | Msa0825230:intron | 20.0% |
| !! | TATTATTATCAATCAATGCA+GGG | + | chr5_3:64953441-64953460 | Msa0825230:intron | 20.0% |
| ! | CAAATACAATCAATCAATCT+TGG | - | chr5_3:64950890-64950909 | None:intergenic | 25.0% |
| ! | CATTTGTGTTCAATTCTTAA+TGG | + | chr5_3:64951285-64951304 | Msa0825230:intron | 25.0% |
| !! | TTTTCAAACTGCTGATATTT+AGG | - | chr5_3:64951347-64951366 | None:intergenic | 25.0% |
| ! | TAAATATCAGCAGTTTGAAA+AGG | + | chr5_3:64951346-64951365 | Msa0825230:intron | 25.0% |
| ! | AAATATCAGCAGTTTGAAAA+GGG | + | chr5_3:64951347-64951366 | Msa0825230:intron | 25.0% |
| ! | ATAAGGTATACATCTGAATT+TGG | + | chr5_3:64951436-64951455 | Msa0825230:intron | 25.0% |
| ! | TAAGGTATACATCTGAATTT+GGG | + | chr5_3:64951437-64951456 | Msa0825230:intron | 25.0% |
| ! | ATATAAACCAATGAAAGTAG+GGG | - | chr5_3:64951583-64951602 | None:intergenic | 25.0% |
| ! | TAATGATGCTGATAATAGAT+AGG | + | chr5_3:64951628-64951647 | Msa0825230:intron | 25.0% |
| ! | AATGATGCTGATAATAGATA+GGG | + | chr5_3:64951629-64951648 | Msa0825230:intron | 25.0% |
| ! | TCATCATGGTTAAAATTATC+AGG | + | chr5_3:64951677-64951696 | Msa0825230:intron | 25.0% |
| ! | ATTAGGACAGTAATGAAAAT+TGG | - | chr5_3:64952285-64952304 | None:intergenic | 25.0% |
| ! | AAACATAATGACTGAACATT+AGG | - | chr5_3:64952302-64952321 | None:intergenic | 25.0% |
| !!! | TGTCAACATGGATTTAATTT+TGG | - | chr5_3:64952388-64952407 | None:intergenic | 25.0% |
| ! | ATGTTATCATGATGAATAGA+AGG | + | chr5_3:64952434-64952453 | Msa0825230:intron | 25.0% |
| !!! | TTTGACCTTTTTTGAAGAAA+TGG | - | chr5_3:64952756-64952775 | None:intergenic | 25.0% |
| ! | GCACTAATTAATCATGTAAT+TGG | + | chr5_3:64952864-64952883 | Msa0825230:intron | 25.0% |
| ! | TTTCTTATTGTAGATTGATG+TGG | + | chr5_3:64953139-64953158 | Msa0825230:intron | 25.0% |
| !!! | TGATGTGTTTTGTTTAAGTA+AGG | + | chr5_3:64953402-64953421 | Msa0825230:intron | 25.0% |
| ! | CTAATAGTGTTTGAAGAAAT+TGG | - | chr5_3:64953790-64953809 | None:intergenic | 25.0% |
| ! | CAATTTCTTCAAACACTATT+AGG | + | chr5_3:64953788-64953807 | Msa0825230:three_prime_UTR | 25.0% |
| TAATGTCCATTCTTCAAAGA+GGG | - | chr5_3:64950849-64950868 | None:intergenic | 30.0% | |
| ATAATGTCCATTCTTCAAAG+AGG | - | chr5_3:64950850-64950869 | None:intergenic | 30.0% | |
| ! | TGATTGTATTTGAAGCAACT+TGG | + | chr5_3:64950898-64950917 | Msa0825230:five_prime_UTR | 30.0% |
| ACAGAATTGCAAAGGTAAAA+GGG | - | chr5_3:64950947-64950966 | None:intergenic | 30.0% | |
| AACAGAATTGCAAAGGTAAA+AGG | - | chr5_3:64950948-64950967 | None:intergenic | 30.0% | |
| ! | TTACCTTTGCAATTCTGTTT+TGG | + | chr5_3:64950949-64950968 | Msa0825230:five_prime_UTR | 30.0% |
| ATAACAACCAAGCTTATTCA+TGG | - | chr5_3:64951062-64951081 | None:intergenic | 30.0% | |
| ATGAATAAGCTTGGTTGTTA+TGG | + | chr5_3:64951061-64951080 | Msa0825230:exon | 30.0% | |
| TGAATAAGCTTGGTTGTTAT+GGG | + | chr5_3:64951062-64951081 | Msa0825230:exon | 30.0% | |
| AAAATTATCAGGTAAAGCAC+TGG | + | chr5_3:64951688-64951707 | Msa0825230:intron | 30.0% | |
| AACATACATGCAATATGAGA+AGG | - | chr5_3:64951867-64951886 | None:intergenic | 30.0% | |
| ! | ACTTTATTGTTGATAGGTGA+TGG | + | chr5_3:64951949-64951968 | Msa0825230:intron | 30.0% |
| ! | CTTTATTGTTGATAGGTGAT+GGG | + | chr5_3:64951950-64951969 | Msa0825230:intron | 30.0% |
| GAACAAATGTGAGGAAAATT+GGG | - | chr5_3:64951994-64952013 | None:intergenic | 30.0% | |
| TGAACAAATGTGAGGAAAAT+TGG | - | chr5_3:64951995-64952014 | None:intergenic | 30.0% | |
| AGTGCAAATATAGAAGAGAA+TGG | - | chr5_3:64952097-64952116 | None:intergenic | 30.0% | |
| TTCTCTTCTATATTTGCACT+TGG | + | chr5_3:64952097-64952116 | Msa0825230:CDS | 30.0% | |
| AACATGTTAGAGCAAAAACA+TGG | - | chr5_3:64952179-64952198 | None:intergenic | 30.0% | |
| TTTGCTCTAACATGTTTATC+AGG | + | chr5_3:64952183-64952202 | Msa0825230:intron | 30.0% | |
| AAATCTTACTTGACCATTCA+AGG | - | chr5_3:64952472-64952491 | None:intergenic | 30.0% | |
| ! | GAATGGTCAAGTAAGATTTT+TGG | + | chr5_3:64952473-64952492 | Msa0825230:intron | 30.0% |
| AACCTAATTGAAACTTAAGC+TGG | + | chr5_3:64952594-64952613 | Msa0825230:intron | 30.0% | |
| GTGCTATAGTTGCAATTATA+TGG | + | chr5_3:64952975-64952994 | Msa0825230:CDS | 30.0% | |
| GTAGAATTCTGTGTCAAAAA+GGG | - | chr5_3:64953373-64953392 | None:intergenic | 30.0% | |
| AGTAGAATTCTGTGTCAAAA+AGG | - | chr5_3:64953374-64953393 | None:intergenic | 30.0% | |
| TCAGACAACAATGTTATTGT+TGG | - | chr5_3:64953731-64953750 | None:intergenic | 30.0% | |
| TAAAAAACCTTGCTGCAAAA+TGG | - | chr5_3:64953830-64953849 | None:intergenic | 30.0% | |
| !! | CAGTTGTTTGTTGTATGACA+AGG | - | chr5_3:64950689-64950708 | None:intergenic | 35.0% |
| ! | AAAAACCCCTCTTTGAAGAA+TGG | + | chr5_3:64950840-64950859 | Msa0825230:five_prime_UTR | 35.0% |
| AATGTCCATTCTTCAAAGAG+GGG | - | chr5_3:64950848-64950867 | None:intergenic | 35.0% | |
| AAGCCAAAACAGAATTGCAA+AGG | - | chr5_3:64950955-64950974 | None:intergenic | 35.0% | |
| TCTAAGTCCATGAATAAGCT+TGG | + | chr5_3:64951052-64951071 | Msa0825230:five_prime_UTR | 35.0% | |
| GAATAAGCTTGGTTGTTATG+GGG | + | chr5_3:64951063-64951082 | Msa0825230:exon | 35.0% | |
| AAAAGAAAAGACAGTGATGC+AGG | + | chr5_3:64951125-64951144 | Msa0825230:CDS | 35.0% | |
| AATAGAGAGTCAGGAATACA+TGG | - | chr5_3:64951250-64951269 | None:intergenic | 35.0% | |
| TCCTGACTCTCTATTATGAT+TGG | + | chr5_3:64951255-64951274 | Msa0825230:intron | 35.0% | |
| !!! | CTTTTTTCCCCTACTTTCAT+TGG | + | chr5_3:64951573-64951592 | Msa0825230:intron | 35.0% |
| GATCATCATGGCAAACAAAT+TGG | + | chr5_3:64951829-64951848 | Msa0825230:CDS | 35.0% | |
| TGATGTAGTGAACAAATGTG+AGG | - | chr5_3:64952003-64952022 | None:intergenic | 35.0% | |
| ! | GATTCTCCTTGCAATTTTCA+AGG | + | chr5_3:64952030-64952049 | Msa0825230:CDS | 35.0% |
| ! | AAAGTGCCTTGAAAATTGCA+AGG | - | chr5_3:64952039-64952058 | None:intergenic | 35.0% |
| !! | TGCAATTTTCAAGGCACTTT+CGG | + | chr5_3:64952039-64952058 | Msa0825230:CDS | 35.0% |
| !!! | AATGGAGTTGTTTTAGATGG+AGG | - | chr5_3:64952079-64952098 | None:intergenic | 35.0% |
| !!! | GAGAATGGAGTTGTTTTAGA+TGG | - | chr5_3:64952082-64952101 | None:intergenic | 35.0% |
| !! | TGACTTTGTTGTTGTCAACA+TGG | - | chr5_3:64952400-64952419 | None:intergenic | 35.0% |
| CACCAGCTTAAGTTTCAATT+AGG | - | chr5_3:64952599-64952618 | None:intergenic | 35.0% | |
| !! | TGGTGAAGTTTTGTCTAGTT+TGG | + | chr5_3:64952614-64952633 | Msa0825230:intron | 35.0% |
| TAACAGCAATCTTAGCCATT+TGG | - | chr5_3:64952691-64952710 | None:intergenic | 35.0% | |
| TGTTACTCCAACAATTGTTC+TGG | + | chr5_3:64952706-64952725 | Msa0825230:CDS | 35.0% | |
| TAATTGGAATGCAATGATCC+AGG | + | chr5_3:64952880-64952899 | Msa0825230:intron | 35.0% | |
| CCTAGAAAGAAAACTGTGAT+AGG | - | chr5_3:64953174-64953193 | None:intergenic | 35.0% | |
| ! | CCTATCACAGTTTTCTTTCT+AGG | + | chr5_3:64953171-64953190 | Msa0825230:CDS | 35.0% |
| !! | ATTTTGATATCTGCTCTCCT+TGG | + | chr5_3:64953264-64953283 | Msa0825230:CDS | 35.0% |
| !!! | GCTACAACTCATGTTGTTTT+AGG | + | chr5_3:64953472-64953491 | Msa0825230:CDS | 35.0% |
| ! | TAAGACCTGTGTTATTCTGT+TGG | + | chr5_3:64953501-64953520 | Msa0825230:CDS | 35.0% |
| ! | AAGACCTGTGTTATTCTGTT+GGG | + | chr5_3:64953502-64953521 | Msa0825230:CDS | 35.0% |
| GTGTTTGAAGAAATTGGTTG+TGG | - | chr5_3:64953784-64953803 | None:intergenic | 35.0% | |
| CAAACACTATTAGGCAATTC+AGG | + | chr5_3:64953797-64953816 | Msa0825230:three_prime_UTR | 35.0% | |
| ! | TTCAATTCCATTTTGCAGCA+AGG | + | chr5_3:64953820-64953839 | Msa0825230:three_prime_UTR | 35.0% |
| GCCAATCATAATAGAGAGTC+AGG | - | chr5_3:64951259-64951278 | None:intergenic | 40.0% | |
| CTAATGCAGTGTTCTCATCA+TGG | + | chr5_3:64951663-64951682 | Msa0825230:intron | 40.0% | |
| !! | ATATCTTTGTTGTTGGCGCT+TGG | - | chr5_3:64951762-64951781 | None:intergenic | 40.0% |
| CGCCAACAACAAAGATATTG+CGG | + | chr5_3:64951764-64951783 | Msa0825230:CDS | 40.0% | |
| ! | GTCCGCAATATCTTTGTTGT+TGG | - | chr5_3:64951769-64951788 | None:intergenic | 40.0% |
| CGCATTATCCTTCAACTTCA+TGG | + | chr5_3:64951796-64951815 | Msa0825230:CDS | 40.0% | |
| AACAGCAACCATGAAGTTGA+AGG | - | chr5_3:64951807-64951826 | None:intergenic | 40.0% | |
| TTCAACTTCATGGTTGCTGT+TGG | + | chr5_3:64951806-64951825 | Msa0825230:CDS | 40.0% | |
| ! | TCAACTTCATGGTTGCTGTT+GGG | + | chr5_3:64951807-64951826 | Msa0825230:CDS | 40.0% |
| TTGTTCACTACATCACTGCA+TGG | + | chr5_3:64952008-64952027 | Msa0825230:CDS | 40.0% | |
| !! | ATTTGCACTTGGTGCTGTTA+TGG | + | chr5_3:64952108-64952127 | Msa0825230:CDS | 40.0% |
| ACATGGACCTGTTATACTTG+AGG | - | chr5_3:64952162-64952181 | None:intergenic | 40.0% | |
| GAACTGTCAGCAAAAAGGAA+AGG | - | chr5_3:64952645-64952664 | None:intergenic | 40.0% | |
| GAACTGAACTGTCAGCAAAA+AGG | - | chr5_3:64952650-64952669 | None:intergenic | 40.0% | |
| !! | CAGTGTTGGTTTCTACCAAA+TGG | + | chr5_3:64952673-64952692 | Msa0825230:CDS | 40.0% |
| AACTCTGCCAGAACAATTGT+TGG | - | chr5_3:64952716-64952735 | None:intergenic | 40.0% | |
| ! | GAATGCAATGATCCAGGTTT+TGG | + | chr5_3:64952886-64952905 | Msa0825230:intron | 40.0% |
| !!! | AATGATCCAGGTTTTGGCTT+TGG | + | chr5_3:64952892-64952911 | Msa0825230:intron | 40.0% |
| TGGTCTAATTTACAGCAGCA+AGG | + | chr5_3:64953028-64953047 | Msa0825230:CDS | 40.0% | |
| ATTTACAGCAGCAAGGAAAC+TGG | + | chr5_3:64953035-64953054 | Msa0825230:CDS | 40.0% | |
| TTACATCCCACTTGAACGAT+AGG | - | chr5_3:64953230-64953249 | None:intergenic | 40.0% | |
| !! | TCCTTGGTTTTCTCTTACAG+TGG | + | chr5_3:64953280-64953299 | Msa0825230:CDS | 40.0% |
| ACCACTGTAAGAGAAAACCA+AGG | - | chr5_3:64953284-64953303 | None:intergenic | 40.0% | |
| TCTGTTATTCGACTCAGATC+CGG | + | chr5_3:64953531-64953550 | Msa0825230:CDS | 40.0% | |
| GTTGAAGGCAAACTATGCTT+CGG | - | chr5_3:64953658-64953677 | None:intergenic | 40.0% | |
| ! | TCTTTGTTGTCTTCACTAGC+TGG | - | chr5_3:64953691-64953710 | None:intergenic | 40.0% |
| CTTGGTTGTTATGGGGTTGT+TGG | + | chr5_3:64951070-64951089 | Msa0825230:exon | 45.0% | |
| GGGTTGTTGGATTCACTGTT+GGG | + | chr5_3:64951083-64951102 | Msa0825230:CDS | 45.0% | |
| TTGGATTCACTGTTGGGAGA+TGG | + | chr5_3:64951089-64951108 | Msa0825230:CDS | 45.0% | |
| AGTCAGGAATACATGGAAGG+AGG | - | chr5_3:64951243-64951262 | None:intergenic | 45.0% | |
| GAGAGTCAGGAATACATGGA+AGG | - | chr5_3:64951246-64951265 | None:intergenic | 45.0% | |
| ACAAAGATATTGCGGACCAG+TGG | + | chr5_3:64951772-64951791 | Msa0825230:CDS | 45.0% | |
| TTGAAGGATAATGCGACCAC+TGG | - | chr5_3:64951791-64951810 | None:intergenic | 45.0% | |
| !! | TGATAGGTGATGGGAAGAGT+TGG | + | chr5_3:64951959-64951978 | Msa0825230:intron | 45.0% |
| !! | GTTTTAGATGGAGGAGACAC+AGG | - | chr5_3:64952070-64952089 | None:intergenic | 45.0% |
| ! | GCTGTTATGGCTTTTGCATC+TGG | + | chr5_3:64952121-64952140 | Msa0825230:CDS | 45.0% |
| ACACCAGCCTCAAGTATAAC+AGG | + | chr5_3:64952152-64952171 | Msa0825230:CDS | 45.0% | |
| CAGTTCAGTTCATGCAGTGT+TGG | + | chr5_3:64952659-64952678 | Msa0825230:intron | 45.0% | |
| TGTAGCAGTTGCAACTGTGT+CGG | + | chr5_3:64952931-64952950 | Msa0825230:CDS | 45.0% | |
| ! | TTCTAGGAGCTTTGATGCCT+TGG | + | chr5_3:64953187-64953206 | Msa0825230:CDS | 45.0% |
| AGGAGTCCTATCGTTCAAGT+GGG | + | chr5_3:64953221-64953240 | Msa0825230:CDS | 45.0% | |
| ! | GGTTTTCTCTTACAGTGGTC+AGG | + | chr5_3:64953285-64953304 | Msa0825230:CDS | 45.0% |
| ! | GTAGTCTTACCCTAATGCCA+AGG | - | chr5_3:64953313-64953332 | None:intergenic | 45.0% |
| ! | ACCTGTGTTATTCTGTTGGG+AGG | + | chr5_3:64953505-64953524 | Msa0825230:CDS | 45.0% |
| CTGTTATTCGACTCAGATCC+GGG | + | chr5_3:64953532-64953551 | Msa0825230:CDS | 45.0% | |
| TGTTATTCGACTCAGATCCG+GGG | + | chr5_3:64953533-64953552 | Msa0825230:CDS | 45.0% | |
| TGTTGCTCTCACTGGAATGT+CGG | + | chr5_3:64953579-64953598 | Msa0825230:CDS | 45.0% | |
| !!! | GCTGGTTTTTGCTGTGTTGA+AGG | - | chr5_3:64953673-64953692 | None:intergenic | 45.0% |
| !!! | TTTGATTTATATAAAAAAAT+TGG | + | chr5_3:64951211-64951230 | Msa0825230:intron | 5.0% |
| GGGGTTGTTGGATTCACTGT+TGG | + | chr5_3:64951082-64951101 | Msa0825230:CDS | 50.0% | |
| GACAGTGATGCAGGAGAAAC+AGG | + | chr5_3:64951134-64951153 | Msa0825230:CDS | 50.0% | |
| CTACAATGAGCTCCGAACCT+CGG | + | chr5_3:64951730-64951749 | Msa0825230:CDS | 50.0% | |
| ! | GGTTGCTGTTGGGATCATCA+TGG | + | chr5_3:64951817-64951836 | Msa0825230:CDS | 50.0% |
| GGACCTGTTATACTTGAGGC+TGG | - | chr5_3:64952158-64952177 | None:intergenic | 50.0% | |
| GCAAGGAAACTGGACAGCTT+TGG | + | chr5_3:64953045-64953064 | Msa0825230:CDS | 50.0% | |
| ATGCCTTGGATTGATCCACC+AGG | + | chr5_3:64953201-64953220 | Msa0825230:CDS | 50.0% | |
| ! | ACTCCTGGTGGATCAATCCA+AGG | - | chr5_3:64953207-64953226 | None:intergenic | 50.0% |
| TTGAACGATAGGACTCCTGG+TGG | - | chr5_3:64953219-64953238 | None:intergenic | 50.0% | |
| CACTTGAACGATAGGACTCC+TGG | - | chr5_3:64953222-64953241 | None:intergenic | 50.0% | |
| CAGGAGTCCTATCGTTCAAG+TGG | + | chr5_3:64953220-64953239 | Msa0825230:CDS | 50.0% | |
| GCCTCCCAACAGAATAACAC+AGG | - | chr5_3:64953509-64953528 | None:intergenic | 50.0% | |
| !! | GATTGTGAGCATTGGTGGAG+CGG | + | chr5_3:64953555-64953574 | Msa0825230:CDS | 50.0% |
| AATGAGCTCCGAACCTCGGA+AGG | + | chr5_3:64951734-64951753 | Msa0825230:CDS | 55.0% | |
| CAGCAGCCAAAGCCAAAACC+TGG | - | chr5_3:64952901-64952920 | None:intergenic | 55.0% | |
| GCTTTGGCTGCTGTATCAGC+TGG | + | chr5_3:64952908-64952927 | Msa0825230:CDS | 55.0% | |
| CTTACAGTGGTCAGGTGCCT+TGG | + | chr5_3:64953293-64953312 | Msa0825230:CDS | 55.0% | |
| TGGTCAGGTGCCTTGGCATT+AGG | + | chr5_3:64953300-64953319 | Msa0825230:CDS | 55.0% | |
| GGTCAGGTGCCTTGGCATTA+GGG | + | chr5_3:64953301-64953320 | Msa0825230:CDS | 55.0% | |
| GATCCGGGGATTGTGAGCAT+TGG | + | chr5_3:64953547-64953566 | Msa0825230:CDS | 55.0% | |
| CCACCAATGCTCACAATCCC+CGG | - | chr5_3:64953553-64953572 | None:intergenic | 55.0% | |
| GCTTGGCTCCTTCCGAGGTT+CGG | - | chr5_3:64951745-64951764 | None:intergenic | 60.0% | |
| !! | CCGGGGATTGTGAGCATTGG+TGG | + | chr5_3:64953550-64953569 | Msa0825230:CDS | 60.0% |
| GGAGCGGTTGTTGCTCTCAC+TGG | + | chr5_3:64953571-64953590 | Msa0825230:CDS | 60.0% | |
| TTGGCGCTTGGCTCCTTCCG+AGG | - | chr5_3:64951750-64951769 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 64950682 | 64953907 | 64950682 | ID=Msa0825230;Name=Msa0825230 |
| chr5_3 | mRNA | 64950682 | 64953907 | 64950682 | ID=Msa0825230-mRNA-1;Parent=Msa0825230;Name=Msa0825230-mRNA-1;_AED=0.10;_eAED=0.10;_QI=398|0.83|0.85|1|1|1|7|157|388 |
| chr5_3 | exon | 64950682 | 64951155 | 64950682 | ID=Msa0825230-mRNA-1:exon:20279;Parent=Msa0825230-mRNA-1 |
| chr5_3 | exon | 64951699 | 64951850 | 64951699 | ID=Msa0825230-mRNA-1:exon:20280;Parent=Msa0825230-mRNA-1 |
| chr5_3 | exon | 64951965 | 64952173 | 64951965 | ID=Msa0825230-mRNA-1:exon:20281;Parent=Msa0825230-mRNA-1 |
| chr5_3 | exon | 64952667 | 64952769 | 64952667 | ID=Msa0825230-mRNA-1:exon:20282;Parent=Msa0825230-mRNA-1 |
| chr5_3 | exon | 64952902 | 64953068 | 64952902 | ID=Msa0825230-mRNA-1:exon:20283;Parent=Msa0825230-mRNA-1 |
| chr5_3 | exon | 64953152 | 64953322 | 64953152 | ID=Msa0825230-mRNA-1:exon:20284;Parent=Msa0825230-mRNA-1 |
| chr5_3 | exon | 64953462 | 64953907 | 64953462 | ID=Msa0825230-mRNA-1:exon:20285;Parent=Msa0825230-mRNA-1 |
| chr5_3 | five_prime_UTR | 64950682 | 64951079 | 64950682 | ID=Msa0825230-mRNA-1:five_prime_utr;Parent=Msa0825230-mRNA-1 |
| chr5_3 | CDS | 64951080 | 64951155 | 64951080 | ID=Msa0825230-mRNA-1:cds;Parent=Msa0825230-mRNA-1 |
| chr5_3 | CDS | 64951699 | 64951850 | 64951699 | ID=Msa0825230-mRNA-1:cds;Parent=Msa0825230-mRNA-1 |
| chr5_3 | CDS | 64951965 | 64952173 | 64951965 | ID=Msa0825230-mRNA-1:cds;Parent=Msa0825230-mRNA-1 |
| chr5_3 | CDS | 64952667 | 64952769 | 64952667 | ID=Msa0825230-mRNA-1:cds;Parent=Msa0825230-mRNA-1 |
| chr5_3 | CDS | 64952902 | 64953068 | 64952902 | ID=Msa0825230-mRNA-1:cds;Parent=Msa0825230-mRNA-1 |
| chr5_3 | CDS | 64953152 | 64953322 | 64953152 | ID=Msa0825230-mRNA-1:cds;Parent=Msa0825230-mRNA-1 |
| chr5_3 | CDS | 64953462 | 64953750 | 64953462 | ID=Msa0825230-mRNA-1:cds;Parent=Msa0825230-mRNA-1 |
| chr5_3 | three_prime_UTR | 64953751 | 64953907 | 64953751 | ID=Msa0825230-mRNA-1:three_prime_utr;Parent=Msa0825230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
