AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0944030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944030 MtrunA17_Chr6g0460801 91.220 410 30 1 1 410 1 404 0.0 768
Msa0944030 MtrunA17_Chr7g0254121 67.805 410 121 4 1 410 1 399 0.0 560
Msa0944030 MtrunA17_Chr6g0452631 49.441 358 171 3 53 409 84 432 1.24e-128 377
Msa0944030 MtrunA17_Chr4g0022501 49.866 373 173 6 39 409 72 432 7.46e-127 373
Msa0944030 MtrunA17_Chr4g0010141 49.300 357 169 4 56 410 73 419 1.00e-125 369
Msa0944030 MtrunA17_Chr2g0317441 48.315 356 169 5 56 410 83 424 1.31e-119 354
Msa0944030 MtrunA17_Chr4g0063621 45.333 375 164 5 36 409 54 388 8.83e-111 330
Msa0944030 MtrunA17_Chr1g0208381 42.857 364 191 6 52 410 46 397 3.85e-97 296
Msa0944030 MtrunA17_Chr1g0169461 42.737 358 192 4 53 409 93 438 2.98e-93 287
Msa0944030 MtrunA17_Chr4g0002191 37.845 362 215 4 50 410 55 407 8.81e-76 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944030 AT3G03690.1 63.222 329 111 3 22 350 24 342 2.27e-148 426
Msa0944030 AT5G15050.1 51.966 356 161 3 56 410 88 434 6.76e-133 389
Msa0944030 AT4G27480.2 50.843 356 160 4 56 410 80 421 2.22e-130 382
Msa0944030 AT4G27480.3 50.843 356 160 4 56 410 80 421 2.22e-130 382
Msa0944030 AT4G27480.1 50.843 356 160 4 56 410 80 421 2.22e-130 382
Msa0944030 AT5G39990.1 50.418 359 168 4 53 410 98 447 4.99e-129 379
Msa0944030 AT1G03520.2 50.134 373 168 7 39 409 1 357 1.06e-126 370
Msa0944030 AT3G15350.2 50.000 358 162 6 56 410 81 424 2.11e-126 372
Msa0944030 AT3G15350.1 50.000 358 162 6 56 410 81 424 2.11e-126 372
Msa0944030 AT1G03520.1 45.823 419 200 7 6 409 40 446 5.41e-126 372
Msa0944030 AT1G53100.1 46.283 417 197 9 4 409 22 422 1.46e-125 369
Msa0944030 AT4G03340.1 46.445 422 194 12 6 409 40 447 1.57e-124 368
Msa0944030 AT1G53100.2 46.683 407 190 9 4 399 22 412 2.79e-122 361
Msa0944030 AT2G37585.1 45.787 356 162 6 56 410 59 384 2.27e-110 329
Msa0944030 AT4G03340.2 43.365 422 184 13 6 409 40 424 7.38e-109 327
Msa0944030 AT1G71070.1 42.222 360 198 4 52 410 45 395 2.14e-99 301
Msa0944030 AT3G24040.1 39.385 358 207 4 53 409 66 414 1.45e-86 270
Msa0944030 AT3G03690.2 58.989 178 69 2 22 199 24 197 4.48e-68 215

Find 79 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTTAGGAGTTGTAAA+TGG 0.207307 6_3:+20412845 Msa0944030:CDS
GCCAAATATCTGATTTCTTT+TGG 0.224723 6_3:-20413635 None:intergenic
GCCAAAAGAAATCAGATATT+TGG 0.232766 6_3:+20413634 Msa0944030:CDS
ATGCTATGGCAATTCTTCTT+AGG 0.239237 6_3:+20412833 Msa0944030:CDS
ATTAAGTATGCAAAACTAAT+TGG 0.250596 6_3:-20412577 None:intergenic
TGATGTTGTTATGGTTAATT+TGG 0.260767 6_3:-20412491 None:intergenic
ACTCAAAGATTATAGGAAAA+TGG 0.261335 6_3:+20415031 Msa0944030:CDS
GATTGTGAAGAAATTAAGTT+TGG 0.263708 6_3:-20412389 None:intergenic
AATGTTGTGTTCATTGGATT+TGG 0.283401 6_3:-20412526 None:intergenic
ACATCTCTATGATCTTTCTT+TGG 0.304538 6_3:-20412697 None:intergenic
TCTTTGAGTGTTAGAGATCT+TGG 0.314388 6_3:-20415017 None:intergenic
CATTCACCATAGCAGTCATT+TGG 0.315591 6_3:+20413096 Msa0944030:CDS
AAATTATTATTTGATTCATA+TGG 0.318689 6_3:+20412663 Msa0944030:CDS
CTCTAACACTCAAAGATTAT+AGG 0.319984 6_3:+20415024 Msa0944030:CDS
AGAGATCTTGGATGTTGTTT+TGG 0.322287 6_3:-20415005 None:intergenic
CATGGAGTTGAAGATTTAGA+TGG 0.338312 6_3:-20413786 None:intergenic
TTCTTAAACTTTCTAGCAAA+TGG 0.368091 6_3:-20415068 None:intergenic
ACTGTTTGGAAATACCCTTC+TGG 0.369138 6_3:-20414909 None:intergenic
ATGTTGAATGTTGTGTTCAT+TGG 0.379901 6_3:-20412532 None:intergenic
GGTTTGAAAATTGAGAATTA+TGG 0.380635 6_3:+20415209 Msa0944030:CDS
TAGAATTGCATATAACTGTT+TGG 0.386470 6_3:-20414923 None:intergenic
TTTCTGAGTATTGTATTCTT+GGG 0.387883 6_3:+20414832 Msa0944030:CDS
ACCATAACAACATCAAAATA+TGG 0.395466 6_3:+20412499 Msa0944030:CDS
GTGGTAAAATGCTTTGATAA+AGG 0.400155 6_3:-20412308 None:intergenic
ATTCACCATAGCAGTCATTT+GGG 0.401509 6_3:+20413097 Msa0944030:CDS
TGAATCAAATAATAATTTCC+TGG 0.403261 6_3:-20412658 None:intergenic
TTGGTCAAGTAGGAAATGTT+TGG 0.403827 6_3:+20412749 Msa0944030:CDS
AATTTAGTCATATGATATAA+TGG 0.406345 6_3:+20415367 Msa0944030:three_prime_UTR
CTTCACAATCATATCTCAAA+TGG 0.411173 6_3:+20412402 Msa0944030:exon
TGGTAAAATGCTTTGATAAA+GGG 0.412761 6_3:-20412307 None:intergenic
ATGATCTACACTACATTACT+TGG 0.419908 6_3:+20414973 Msa0944030:CDS
ACACAAAATTTGTGTAGTAT+TGG 0.427525 6_3:-20414881 None:intergenic
TAGTGCATCTGATTATCCTT+TGG 0.430100 6_3:+20412885 Msa0944030:CDS
TACTTAATTTCAGGTTCAAA+AGG 0.434285 6_3:+20412592 Msa0944030:CDS
TGAATGAAATTCATATGCTT+TGG 0.436558 6_3:-20413079 None:intergenic
TATTTGATTCATATGGATCA+TGG 0.436582 6_3:+20412670 Msa0944030:CDS
GAAAATCAAAAGGTTGTTGA+AGG 0.437111 6_3:+20412624 Msa0944030:CDS
CTGAGTATTGTATTCTTGGG+TGG 0.442957 6_3:+20414835 Msa0944030:CDS
ACCATAGCAGTCATTTGGGT+TGG 0.447311 6_3:+20413101 Msa0944030:CDS
GAAGAAATTAAGTTTGGGAA+TGG 0.455308 6_3:-20412383 None:intergenic
TTAGGAGTTGTAAATGGGAT+TGG 0.455353 6_3:+20412851 Msa0944030:CDS
TATCCTTTGGTTACACAAGA+TGG 0.455593 6_3:+20412898 Msa0944030:CDS
AGTTGAAGAGTGAATATAAT+GGG 0.456469 6_3:-20412280 None:intergenic
CAAAGAACAATGTTGAGGTT+AGG 0.456716 6_3:-20412453 None:intergenic
TCTTCTTAGGAGTTGTAAAT+GGG 0.473649 6_3:+20412846 Msa0944030:CDS
ATTGTGAAGAAATTAAGTTT+GGG 0.473998 6_3:-20412388 None:intergenic
TGAGTATTGTATTCTTGGGT+GGG 0.475364 6_3:+20414836 Msa0944030:CDS
TTGAAGGCTTTGTACCATCC+AGG 0.476164 6_3:+20412640 Msa0944030:CDS
CAAAATTTGTGTAGTATTGG+AGG 0.480295 6_3:-20414878 None:intergenic
AAGAAATTAAGTTTGGGAAT+GGG 0.481976 6_3:-20412382 None:intergenic
TGAGTAGAGTAATGAAGAAG+TGG 0.486899 6_3:-20412327 None:intergenic
TTCTACAACTCTTCATGCTA+TGG 0.494826 6_3:+20412819 Msa0944030:CDS
CAATGTTGAGGTTAGGATAG+AGG 0.496090 6_3:-20412446 None:intergenic
GTTGTGTTCATTGGATTTGG+AGG 0.504260 6_3:-20412523 None:intergenic
TAGTTGAAGAGTGAATATAA+TGG 0.504566 6_3:-20412281 None:intergenic
CTATGCTTTCCACCTTGTGA+TGG 0.509851 6_3:-20415176 None:intergenic
TCAAATAATAATTTCCTGGA+TGG 0.514443 6_3:-20412654 None:intergenic
TGTTGTTATGGTTAATTTGG+TGG 0.523588 6_3:-20412488 None:intergenic
GTTGTTATGGTTAATTTGGT+GGG 0.523751 6_3:-20412487 None:intergenic
AGAGTTGTAGAAAGCATAGT+TGG 0.528565 6_3:-20412808 None:intergenic
GAGATGCTATGAAAATCAAA+AGG 0.539134 6_3:+20412614 Msa0944030:CDS
AAAGGTAAATTACAAATGCA+TGG 0.539974 6_3:-20413804 None:intergenic
ATGCTTTGGAACTCCAGAAA+AGG 0.544312 6_3:-20413065 None:intergenic
TAGTATTGGAGGAGGATCCT+TGG 0.554634 6_3:-20414867 None:intergenic
AAAGAAATCAGATATTTGGC+AGG 0.557557 6_3:+20413638 Msa0944030:CDS
TAAACTTTCTAGCAAATGGA+CGG 0.567234 6_3:-20415064 None:intergenic
AATTTGTGTAGTATTGGAGG+AGG 0.576107 6_3:-20414875 None:intergenic
TTGGAACTCCAGAAAAGGCA+TGG 0.584028 6_3:-20413060 None:intergenic
TGATCTACACTACATTACTT+GGG 0.594137 6_3:+20414974 Msa0944030:CDS
TCCAACCCAAATGACTGCTA+TGG 0.598350 6_3:-20413102 None:intergenic
GTGTAGATCATTGTTAGCTG+TGG 0.612568 6_3:-20414961 None:intergenic
ATTTACGCAAACAACAATGT+CGG 0.619006 6_3:+20415300 Msa0944030:CDS
AAGAACAAAGAACAATGTTG+AGG 0.619282 6_3:-20412458 None:intergenic
AAAATCATTGACACATGGAG+AGG 0.652824 6_3:+20412196 Msa0944030:five_prime_UTR
TTGGGTGGGAAAATTTACCA+AGG 0.657816 6_3:+20414850 Msa0944030:CDS
GGAAAGCATAGAGCATGTCA+TGG 0.659761 6_3:+20415188 Msa0944030:CDS
ATACCATCTTGTGTAACCAA+AGG 0.660551 6_3:-20412901 None:intergenic
TGGTGTTCATCACCATCACA+AGG 0.691054 6_3:+20415164 Msa0944030:CDS
TGTTCATCACCATCACAAGG+TGG 0.742385 6_3:+20415167 Msa0944030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATTATTTGATTCATA+TGG + chr6_3:20412663-20412682 Msa0944030:CDS 10.0%
!! AAATGATTCAAAAAATAAAA+TGG - chr6_3:20412955-20412974 None:intergenic 10.0%
!! TTATAAAATATTTAGTCTAT+TGG + chr6_3:20413289-20413308 Msa0944030:intron 10.0%
!!! ATTAATAAACTTTTAGTATA+GGG - chr6_3:20413464-20413483 None:intergenic 10.0%
!!! AATTAATAAACTTTTAGTAT+AGG - chr6_3:20413465-20413484 None:intergenic 10.0%
!!! ATTAGAATTTTTAAGTAAAA+TGG - chr6_3:20413550-20413569 None:intergenic 10.0%
!! AAGTATATAATCATAAATTA+TGG - chr6_3:20413976-20413995 None:intergenic 10.0%
!!! AGTAATTTTGTTACATATAA+AGG + chr6_3:20412784-20412803 Msa0944030:CDS 15.0%
!!! TTAATAAACTTTTAGTATAG+GGG - chr6_3:20413463-20413482 None:intergenic 15.0%
!! GAAAAAAATTAAAGTTGTAT+TGG - chr6_3:20414098-20414117 None:intergenic 15.0%
!!! TTATTTCTATTCAAAAATCT+AGG + chr6_3:20414780-20414799 Msa0944030:intron 15.0%
!! AATTTAGTCATATGATATAA+TGG + chr6_3:20415367-20415386 Msa0944030:three_prime_UTR 15.0%
!!! GATTCTTTTCTTTTATAACA+AGG - chr6_3:20412222-20412241 None:intergenic 20.0%
!! ATTGTGAAGAAATTAAGTTT+GGG - chr6_3:20412391-20412410 None:intergenic 20.0%
!!! ACTAATTGGATATTTTTTGT+TGG - chr6_3:20412566-20412585 None:intergenic 20.0%
!! ATTAAGTATGCAAAACTAAT+TGG - chr6_3:20412580-20412599 None:intergenic 20.0%
!! TGAATCAAATAATAATTTCC+TGG - chr6_3:20412661-20412680 None:intergenic 20.0%
!! TATATAGTTTAAAAGCTGTT+GGG - chr6_3:20413683-20413702 None:intergenic 20.0%
!! ATACTATAGAACAAATCTAA+AGG - chr6_3:20413733-20413752 None:intergenic 20.0%
!!! AAGTGACATTCATTTTAAAA+CGG - chr6_3:20414033-20414052 None:intergenic 20.0%
!! AAAATTATTAAGGGTAAAGT+TGG - chr6_3:20414123-20414142 None:intergenic 20.0%
!! GTTGCATTGAAAATTATTAA+GGG - chr6_3:20414132-20414151 None:intergenic 20.0%
!! AGTTGCATTGAAAATTATTA+AGG - chr6_3:20414133-20414152 None:intergenic 20.0%
!!! GTTTTTTTCTTATAAAGTAG+AGG + chr6_3:20414161-20414180 Msa0944030:intron 20.0%
!!! TAAGTTCTCTAAAATAGTTT+AGG + chr6_3:20414346-20414365 Msa0944030:intron 20.0%
!! ACACAAATTTGACATTAATT+TGG - chr6_3:20414702-20414721 None:intergenic 20.0%
!! ATAACAAGTTAATGAATGAT+TGG - chr6_3:20414764-20414783 None:intergenic 20.0%
!!! CATATTTTTCATCTTTTTTG+AGG - chr6_3:20415255-20415274 None:intergenic 20.0%
! CAAAAAAAATCATTGACACA+TGG + chr6_3:20412191-20412210 Msa0944030:five_prime_UTR 25.0%
!! TGTGTGGTTTACTTAATTTT+TGG - chr6_3:20412244-20412263 None:intergenic 25.0%
!!! ACTAAATTTTTTGAAGTGTG+TGG - chr6_3:20412260-20412279 None:intergenic 25.0%
! AGTTGAAGAGTGAATATAAT+GGG - chr6_3:20412283-20412302 None:intergenic 25.0%
! TAGTTGAAGAGTGAATATAA+TGG - chr6_3:20412284-20412303 None:intergenic 25.0%
! TGGTAAAATGCTTTGATAAA+GGG - chr6_3:20412310-20412329 None:intergenic 25.0%
! AAGAAATTAAGTTTGGGAAT+GGG - chr6_3:20412385-20412404 None:intergenic 25.0%
! GATTGTGAAGAAATTAAGTT+TGG - chr6_3:20412392-20412411 None:intergenic 25.0%
! TGATGTTGTTATGGTTAATT+TGG - chr6_3:20412494-20412513 None:intergenic 25.0%
! ACCATAACAACATCAAAATA+TGG + chr6_3:20412499-20412518 Msa0944030:CDS 25.0%
!!! ACCATATTTTGATGTTGTTA+TGG - chr6_3:20412503-20412522 None:intergenic 25.0%
!!! TGGATATTTTTTGTTGGTAT+TGG - chr6_3:20412560-20412579 None:intergenic 25.0%
!! AGTTTTGCATACTTAATTTC+AGG + chr6_3:20412583-20412602 Msa0944030:CDS 25.0%
!!! TACTTAATTTCAGGTTCAAA+AGG + chr6_3:20412592-20412611 Msa0944030:CDS 25.0%
! TCAAATAATAATTTCCTGGA+TGG - chr6_3:20412657-20412676 None:intergenic 25.0%
! TATTTGATTCATATGGATCA+TGG + chr6_3:20412670-20412689 Msa0944030:CDS 25.0%
! TGAATGAAATTCATATGCTT+TGG - chr6_3:20413082-20413101 None:intergenic 25.0%
! CCAATTTAGTCACTAAAATT+TGG - chr6_3:20413505-20413524 None:intergenic 25.0%
!!! CCAAATTTTAGTGACTAAAT+TGG + chr6_3:20413502-20413521 Msa0944030:intron 25.0%
!! ATATTTTCCAGCAATAAAAG+AGG + chr6_3:20413579-20413598 Msa0944030:intron 25.0%
!! TATTTTCCAGCAATAAAAGA+GGG + chr6_3:20413580-20413599 Msa0944030:intron 25.0%
! GTATATAGTTTAAAAGCTGT+TGG - chr6_3:20413684-20413703 None:intergenic 25.0%
!! ACAGCTTTTAAACTATATAC+AGG + chr6_3:20413684-20413703 Msa0944030:intron 25.0%
! GAACAAATCTAAAGGATTAA+AGG - chr6_3:20413725-20413744 None:intergenic 25.0%
! AAAGGTAAATTACAAATGCA+TGG - chr6_3:20413807-20413826 None:intergenic 25.0%
! AATAAAATACTTCACGTGAA+AGG - chr6_3:20413825-20413844 None:intergenic 25.0%
! AATGATCAATACAACTACAA+GGG - chr6_3:20414599-20414618 None:intergenic 25.0%
! TAATGATCAATACAACTACA+AGG - chr6_3:20414600-20414619 None:intergenic 25.0%
! GTTAGTATTAACCATATAGT+TGG + chr6_3:20414650-20414669 Msa0944030:intron 25.0%
!!! TTTTCTGAGTATTGTATTCT+TGG + chr6_3:20414831-20414850 Msa0944030:CDS 25.0%
!! TTTCTGAGTATTGTATTCTT+GGG + chr6_3:20414832-20414851 Msa0944030:CDS 25.0%
! ACACAAAATTTGTGTAGTAT+TGG - chr6_3:20414884-20414903 None:intergenic 25.0%
! TAGAATTGCATATAACTGTT+TGG - chr6_3:20414926-20414945 None:intergenic 25.0%
! ACTCAAAGATTATAGGAAAA+TGG + chr6_3:20415031-20415050 Msa0944030:CDS 25.0%
!! TTCTTAAACTTTCTAGCAAA+TGG - chr6_3:20415071-20415090 None:intergenic 25.0%
! GGTTTGAAAATTGAGAATTA+TGG + chr6_3:20415209-20415228 Msa0944030:CDS 25.0%
GTGGTAAAATGCTTTGATAA+AGG - chr6_3:20412311-20412330 None:intergenic 30.0%
GAAGAAATTAAGTTTGGGAA+TGG - chr6_3:20412386-20412405 None:intergenic 30.0%
CTTCACAATCATATCTCAAA+TGG + chr6_3:20412402-20412421 Msa0944030:exon 30.0%
AAGAACAAAGAACAATGTTG+AGG - chr6_3:20412461-20412480 None:intergenic 30.0%
! GTTGTTATGGTTAATTTGGT+GGG - chr6_3:20412490-20412509 None:intergenic 30.0%
! TGTTGTTATGGTTAATTTGG+TGG - chr6_3:20412491-20412510 None:intergenic 30.0%
AATGTTGTGTTCATTGGATT+TGG - chr6_3:20412529-20412548 None:intergenic 30.0%
ATGTTGAATGTTGTGTTCAT+TGG - chr6_3:20412535-20412554 None:intergenic 30.0%
GAGATGCTATGAAAATCAAA+AGG + chr6_3:20412614-20412633 Msa0944030:CDS 30.0%
GAAAATCAAAAGGTTGTTGA+AGG + chr6_3:20412624-20412643 Msa0944030:CDS 30.0%
ACATCTCTATGATCTTTCTT+TGG - chr6_3:20412700-20412719 None:intergenic 30.0%
TTCTTCTTAGGAGTTGTAAA+TGG + chr6_3:20412845-20412864 Msa0944030:CDS 30.0%
TCTTCTTAGGAGTTGTAAAT+GGG + chr6_3:20412846-20412865 Msa0944030:CDS 30.0%
ATGGCATGATCCAATATTAA+AGG - chr6_3:20412936-20412955 None:intergenic 30.0%
!! AGTCTCTAAAATTACCTCAA+AGG + chr6_3:20413326-20413345 Msa0944030:intron 30.0%
! GAAGCCAATTTTTATAGATC+CGG + chr6_3:20413602-20413621 Msa0944030:CDS 30.0%
GCCAAAAGAAATCAGATATT+TGG + chr6_3:20413634-20413653 Msa0944030:CDS 30.0%
! GCCAAATATCTGATTTCTTT+TGG - chr6_3:20413638-20413657 None:intergenic 30.0%
AAAGAAATCAGATATTTGGC+AGG + chr6_3:20413638-20413657 Msa0944030:CDS 30.0%
AAAATAAATGATACCCTCGA+GGG - chr6_3:20413929-20413948 None:intergenic 30.0%
!!! AGGGTATCATTTATTTTGGT+CGG + chr6_3:20413932-20413951 Msa0944030:intron 30.0%
TTTCTTAATCTGTGTGCAAT+TGG + chr6_3:20414226-20414245 Msa0944030:intron 30.0%
GTATTAACCATATAGTTGGA+TGG + chr6_3:20414654-20414673 Msa0944030:intron 30.0%
GAAATTACCATCCAACTATA+TGG - chr6_3:20414664-20414683 None:intergenic 30.0%
! CAAAATTTGTGTAGTATTGG+AGG - chr6_3:20414881-20414900 None:intergenic 30.0%
ATGATCTACACTACATTACT+TGG + chr6_3:20414973-20414992 Msa0944030:CDS 30.0%
TGATCTACACTACATTACTT+GGG + chr6_3:20414974-20414993 Msa0944030:CDS 30.0%
CTCTAACACTCAAAGATTAT+AGG + chr6_3:20415024-20415043 Msa0944030:CDS 30.0%
! TAAACTTTCTAGCAAATGGA+CGG - chr6_3:20415067-20415086 None:intergenic 30.0%
! AAATTGATAGAGAGCTTTTG+AGG + chr6_3:20415111-20415130 Msa0944030:CDS 30.0%
! AATCGTGGACAATTTTCTTT+TGG + chr6_3:20415137-20415156 Msa0944030:CDS 30.0%
ATTTACGCAAACAACAATGT+CGG + chr6_3:20415300-20415319 Msa0944030:CDS 30.0%
AAAATCATTGACACATGGAG+AGG + chr6_3:20412196-20412215 Msa0944030:five_prime_UTR 35.0%
TGAGTAGAGTAATGAAGAAG+TGG - chr6_3:20412330-20412349 None:intergenic 35.0%
CAAAGAACAATGTTGAGGTT+AGG - chr6_3:20412456-20412475 None:intergenic 35.0%
! GTGACTAATGAACCTGTTTT+TGG + chr6_3:20412730-20412749 Msa0944030:CDS 35.0%
TTTCCTACTTGACCAAAAAC+AGG - chr6_3:20412745-20412764 None:intergenic 35.0%
TTGGTCAAGTAGGAAATGTT+TGG + chr6_3:20412749-20412768 Msa0944030:CDS 35.0%
! AGAGTTGTAGAAAGCATAGT+TGG - chr6_3:20412811-20412830 None:intergenic 35.0%
TTCTACAACTCTTCATGCTA+TGG + chr6_3:20412819-20412838 Msa0944030:CDS 35.0%
ATGCTATGGCAATTCTTCTT+AGG + chr6_3:20412833-20412852 Msa0944030:CDS 35.0%
TTAGGAGTTGTAAATGGGAT+TGG + chr6_3:20412851-20412870 Msa0944030:CDS 35.0%
TAGTGCATCTGATTATCCTT+TGG + chr6_3:20412885-20412904 Msa0944030:CDS 35.0%
TATCCTTTGGTTACACAAGA+TGG + chr6_3:20412898-20412917 Msa0944030:CDS 35.0%
ATACCATCTTGTGTAACCAA+AGG - chr6_3:20412904-20412923 None:intergenic 35.0%
TTTGGTTACACAAGATGGTA+TGG + chr6_3:20412903-20412922 Msa0944030:intron 35.0%
CATGGATCAGATCTGAAAAT+TGG - chr6_3:20413045-20413064 None:intergenic 35.0%
ATTCACCATAGCAGTCATTT+GGG + chr6_3:20413097-20413116 Msa0944030:CDS 35.0%
TCATCACATTAGTTCCTTTG+AGG - chr6_3:20413343-20413362 None:intergenic 35.0%
AGAGCCGGATCTATAAAAAT+TGG - chr6_3:20413609-20413628 None:intergenic 35.0%
CATGGAGTTGAAGATTTAGA+TGG - chr6_3:20413789-20413808 None:intergenic 35.0%
TGACTTATCTATAGCATGTG+AGG + chr6_3:20413851-20413870 Msa0944030:intron 35.0%
CAAAATAAATGATACCCTCG+AGG - chr6_3:20413930-20413949 None:intergenic 35.0%
!!! CTCGAGGGTATCATTTATTT+TGG + chr6_3:20413928-20413947 Msa0944030:intron 35.0%
TCTATTTGCATAAGTATCCG+TGG + chr6_3:20414312-20414331 Msa0944030:intron 35.0%
TCAAAAATCTAGGTTCAGCT+TGG + chr6_3:20414790-20414809 Msa0944030:intron 35.0%
! TGAGTATTGTATTCTTGGGT+GGG + chr6_3:20414836-20414855 Msa0944030:CDS 35.0%
! AATTTGTGTAGTATTGGAGG+AGG - chr6_3:20414878-20414897 None:intergenic 35.0%
! AATTTTGTGTCATCTCCAGA+AGG + chr6_3:20414894-20414913 Msa0944030:CDS 35.0%
! ATTTTGTGTCATCTCCAGAA+GGG + chr6_3:20414895-20414914 Msa0944030:CDS 35.0%
!! AGAGATCTTGGATGTTGTTT+TGG - chr6_3:20415008-20415027 None:intergenic 35.0%
TCTTTGAGTGTTAGAGATCT+TGG - chr6_3:20415020-20415039 None:intergenic 35.0%
!! GACAATTTTCTTTTGGAGGA+TGG + chr6_3:20415144-20415163 Msa0944030:CDS 35.0%
!!! ATCTTTTTTGAGGCTAGACT+TGG - chr6_3:20415245-20415264 None:intergenic 35.0%
CAATGTTGAGGTTAGGATAG+AGG - chr6_3:20412449-20412468 None:intergenic 40.0%
GTTGTGTTCATTGGATTTGG+AGG - chr6_3:20412526-20412545 None:intergenic 40.0%
!!! GAACCTGTTTTTGGTCAAGT+AGG + chr6_3:20412739-20412758 Msa0944030:CDS 40.0%
TGGTGAGTGGCCTTTAATAT+TGG + chr6_3:20412923-20412942 Msa0944030:intron 40.0%
!! ATGCTTTGGAACTCCAGAAA+AGG - chr6_3:20413068-20413087 None:intergenic 40.0%
CATTCACCATAGCAGTCATT+TGG + chr6_3:20413096-20413115 Msa0944030:CDS 40.0%
!! TTCTTTTGGCTGTAAAGAGC+CGG - chr6_3:20413624-20413643 None:intergenic 40.0%
TTTGGCAGGTAACTAAGCAA+AGG + chr6_3:20413652-20413671 Msa0944030:intron 40.0%
ACTATAACGACCACTCTGTT+TGG - chr6_3:20413885-20413904 None:intergenic 40.0%
AACTTATGCAGACAATGCCA+CGG - chr6_3:20414332-20414351 None:intergenic 40.0%
TTCGTGAGTGCGTTCAAATA+TGG + chr6_3:20414571-20414590 Msa0944030:intron 40.0%
! CTGAGTATTGTATTCTTGGG+TGG + chr6_3:20414835-20414854 Msa0944030:CDS 40.0%
TTGGGTGGGAAAATTTACCA+AGG + chr6_3:20414850-20414869 Msa0944030:CDS 40.0%
ACTGTTTGGAAATACCCTTC+TGG - chr6_3:20414912-20414931 None:intergenic 40.0%
GTGTAGATCATTGTTAGCTG+TGG - chr6_3:20414964-20414983 None:intergenic 40.0%
!!! GATCTTGGATGTTGTTTTGG+AGG - chr6_3:20415005-20415024 None:intergenic 40.0%
! CGTGGACAATTTTCTTTTGG+AGG + chr6_3:20415140-20415159 Msa0944030:CDS 40.0%
! TTGAAGGCTTTGTACCATCC+AGG + chr6_3:20412640-20412659 Msa0944030:CDS 45.0%
ACACAAGATGGTATGGTGAG+TGG + chr6_3:20412910-20412929 Msa0944030:intron 45.0%
! GATCTGATCCATGCCTTTTC+TGG + chr6_3:20413052-20413071 Msa0944030:intron 45.0%
TTGGAACTCCAGAAAAGGCA+TGG - chr6_3:20413063-20413082 None:intergenic 45.0%
ACCATAGCAGTCATTTGGGT+TGG + chr6_3:20413101-20413120 Msa0944030:CDS 45.0%
TCCAACCCAAATGACTGCTA+TGG - chr6_3:20413105-20413124 None:intergenic 45.0%
! AGGGGCATAGTACAAGTGAT+TGG - chr6_3:20413445-20413464 None:intergenic 45.0%
! TGGCTTCCCTCTTTTATTGC+TGG - chr6_3:20413589-20413608 None:intergenic 45.0%
TTCCAATATTGCATCCCTCG+AGG + chr6_3:20413912-20413931 Msa0944030:intron 45.0%
TCCAATATTGCATCCCTCGA+GGG + chr6_3:20413913-20413932 Msa0944030:intron 45.0%
! TAGTATTGGAGGAGGATCCT+TGG - chr6_3:20414870-20414889 None:intergenic 45.0%
!! GAGCTTTTGAGGAGAAATCG+TGG + chr6_3:20415122-20415141 Msa0944030:CDS 45.0%
TGGTGTTCATCACCATCACA+AGG + chr6_3:20415164-20415183 Msa0944030:CDS 45.0%
TGTTCATCACCATCACAAGG+TGG + chr6_3:20415167-20415186 Msa0944030:CDS 45.0%
CTATGCTTTCCACCTTGTGA+TGG - chr6_3:20415179-20415198 None:intergenic 45.0%
! GGAAAGCATAGAGCATGTCA+TGG + chr6_3:20415188-20415207 Msa0944030:CDS 45.0%
!!! AATTAAATTCTATAATTTTA+GGG - chr6_3:20413236-20413255 None:intergenic 5.0%
!!! TAATTAAATTCTATAATTTT+AGG - chr6_3:20413237-20413256 None:intergenic 5.0%
!! GGCTCTGAATCCAAACAGAG+TGG + chr6_3:20413872-20413891 Msa0944030:intron 50.0%
ACCCTCGAGGGATGCAATAT+TGG - chr6_3:20413917-20413936 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 20412189 20415400 20412189 ID=Msa0944030;Name=Msa0944030
chr6_3 mRNA 20412189 20415400 20412189 ID=Msa0944030-mRNA-1;Parent=Msa0944030;Name=Msa0944030-mRNA-1;_AED=0.10;_eAED=0.10;_QI=232|0.5|0.6|1|1|1|5|75|410
chr6_3 exon 20412189 20412919 20412189 ID=Msa0944030-mRNA-1:exon:6062;Parent=Msa0944030-mRNA-1
chr6_3 exon 20413053 20413128 20413053 ID=Msa0944030-mRNA-1:exon:6063;Parent=Msa0944030-mRNA-1
chr6_3 exon 20413590 20413659 20413590 ID=Msa0944030-mRNA-1:exon:6064;Parent=Msa0944030-mRNA-1
chr6_3 exon 20413750 20413813 20413750 ID=Msa0944030-mRNA-1:exon:6065;Parent=Msa0944030-mRNA-1
chr6_3 exon 20414802 20415400 20414802 ID=Msa0944030-mRNA-1:exon:6066;Parent=Msa0944030-mRNA-1
chr6_3 five_prime_UTR 20412189 20412420 20412189 ID=Msa0944030-mRNA-1:five_prime_utr;Parent=Msa0944030-mRNA-1
chr6_3 CDS 20412421 20412919 20412421 ID=Msa0944030-mRNA-1:cds;Parent=Msa0944030-mRNA-1
chr6_3 CDS 20413053 20413128 20413053 ID=Msa0944030-mRNA-1:cds;Parent=Msa0944030-mRNA-1
chr6_3 CDS 20413590 20413659 20413590 ID=Msa0944030-mRNA-1:cds;Parent=Msa0944030-mRNA-1
chr6_3 CDS 20413750 20413813 20413750 ID=Msa0944030-mRNA-1:cds;Parent=Msa0944030-mRNA-1
chr6_3 CDS 20414802 20415325 20414802 ID=Msa0944030-mRNA-1:cds;Parent=Msa0944030-mRNA-1
chr6_3 three_prime_UTR 20415326 20415400 20415326 ID=Msa0944030-mRNA-1:three_prime_utr;Parent=Msa0944030-mRNA-1
Gene Sequence

>Msa0944030

ATGGATATCAAAATTTTCATTATTGCCTCTATCCTAACCTCAACATTGTTCTTTGTTCTTTACATTCCCACCAAATTAACCATAACAACATCAAAATATGGTCCTCCAAATCCAATGAACACAACATTCAACATCTCCAATACCAACAAAAAATATCCAATTAGTTTTGCATACTTAATTTCAGGTTCAAAAGGAGATGCTATGAAAATCAAAAGGTTGTTGAAGGCTTTGTACCATCCAGGAAATTATTATTTGATTCATATGGATCATGGTGCACCAAAGAAAGATCATAGAGATGTGATTGATTATGTGACTAATGAACCTGTTTTTGGTCAAGTAGGAAATGTTTGGATTATAAAGAAGAGTAATTTTGTTACATATAAAGGTCCAACTATGCTTTCTACAACTCTTCATGCTATGGCAATTCTTCTTAGGAGTTGTAAATGGGATTGGTTTATTAATCTTAGTGCATCTGATTATCCTTTGGTTACACAAGATGATCTGATCCATGCCTTTTCTGGAGTTCCAAAGCATATGAATTTCATTCACCATAGCAGTCATTTGGGTTGGAAATTCAATAAAAGAGGGAAGCCAATTTTTATAGATCCGGCTCTTTACAGCCAAAAGAAATCAGATATTTGGCAGTATCATCATATGCAATATGCATCTAAATCTTCAACTCCATCTAAATCTTCAACTCCATGCATTTGTTCAGCTTGGACAATGCTATCAAGATCTTTTTCTGAGTATTGTATTCTTGGGTGGGAAAATTTACCAAGGATCCTCCTCCAATACTACACAAATTTTGTGTCATCTCCAGAAGGGTATTTCCAAACAGTTATATGCAATTCTAAAGACTACAAGAACACCACAGCTAACAATGATCTACACTACATTACTTGGGATAATCCTCCAAAACAACATCCAAGATCTCTAACACTCAAAGATTATAGGAAAATGGTTTTGAGCAACCGTCCATTTGCTAGAAAGTTTAAGAAAAATGATATTGTGCTTGATAAAATTGATAGAGAGCTTTTGAGGAGAAATCGTGGACAATTTTCTTTTGGAGGATGGTGTTCATCACCATCACAAGGTGGAAAGCATAGAGCATGTCATGGTTTGAAAATTGAGAATTATGGTGTTCTTAAGCCAAGTCTAGCCTCAAAAAAGATGAAAAATATGCTTTCAAATATTATTTCGTTTAAAAATTTACGCAAACAACAATGTCGGTAA

Protein sequence

>Msa0944030

MDIKIFIIASILTSTLFFVLYIPTKLTITTSKYGPPNPMNTTFNISNTNKKYPISFAYLISGSKGDAMKIKRLLKALYHPGNYYLIHMDHGAPKKDHRDVIDYVTNEPVFGQVGNVWIIKKSNFVTYKGPTMLSTTLHAMAILLRSCKWDWFINLSASDYPLVTQDDLIHAFSGVPKHMNFIHHSSHLGWKFNKRGKPIFIDPALYSQKKSDIWQYHHMQYASKSSTPSKSSTPCICSAWTMLSRSFSEYCILGWENLPRILLQYYTNFVSSPEGYFQTVICNSKDYKNTTANNDLHYITWDNPPKQHPRSLTLKDYRKMVLSNRPFARKFKKNDIVLDKIDRELLRRNRGQFSFGGWCSSPSQGGKHRACHGLKIENYGVLKPSLASKKMKNMLSNIISFKNLRKQQCR*