Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744160 | XP_003617863.2 | 98.711 | 388 | 2 | 1 | 1 | 388 | 1 | 385 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744160 | sp|Q9FG70|NSTU2_ARATH | 79.255 | 376 | 72 | 3 | 1 | 373 | 1 | 373 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744160 | G7KEK1 | 98.711 | 388 | 2 | 1 | 1 | 388 | 1 | 385 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081520 | Msa0744160 | 0.806461 | 8.134085e-50 | -8.615850e-47 |
| Msa0110970 | Msa0744160 | 0.809416 | 1.912730e-50 | -8.615850e-47 |
| Msa0118570 | Msa0744160 | 0.800552 | 1.366394e-48 | -8.615850e-47 |
| Msa0684500 | Msa0744160 | 0.823956 | 1.047335e-53 | -8.615850e-47 |
| Msa0744160 | Msa0788060 | 0.882594 | 9.138077e-71 | -8.615850e-47 |
| Msa0744160 | Msa0825230 | 0.866621 | 2.493473e-65 | -8.615850e-47 |
| Msa0744160 | Msa0864460 | 0.903716 | 2.601963e-79 | -8.615850e-47 |
| Msa0744160 | Msa1031930 | 0.812813 | 3.510053e-51 | -8.615850e-47 |
| Msa0744160 | Msa1201470 | 0.811949 | 5.420951e-51 | -8.615850e-47 |
| Msa0744160 | Msa1434480 | 0.801340 | 9.430775e-49 | -8.615850e-47 |
| Msa0744160 | Msa1437940 | 0.803504 | 3.377693e-49 | -8.615850e-47 |
| Msa0744160 | Msa1460390 | 0.800761 | 1.238246e-48 | -8.615850e-47 |
| Msa0154320 | Msa0744160 | 0.815016 | 1.147207e-51 | -8.615850e-47 |
| Msa0173890 | Msa0744160 | 0.811575 | 6.537028e-51 | -8.615850e-47 |
| Msa0317280 | Msa0744160 | 0.802092 | 6.609132e-49 | -8.615850e-47 |
| Msa0337540 | Msa0744160 | 0.803510 | 3.368562e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744160 | MtrunA17_Chr5g0446851 | 98.711 | 388 | 2 | 1 | 1 | 388 | 1 | 385 | 0.0 | 768 |
| Msa0744160 | MtrunA17_Chr2g0298931 | 60.477 | 377 | 142 | 4 | 3 | 376 | 1 | 373 | 5.65e-166 | 469 |
| Msa0744160 | MtrunA17_Chr2g0326791 | 29.429 | 350 | 216 | 6 | 55 | 383 | 10 | 349 | 6.40e-38 | 139 |
| Msa0744160 | MtrunA17_Chr6g0467391 | 30.293 | 307 | 200 | 4 | 55 | 357 | 10 | 306 | 1.18e-36 | 135 |
| Msa0744160 | MtrunA17_Chr6g0467371 | 30.293 | 307 | 200 | 4 | 55 | 357 | 10 | 306 | 1.18e-36 | 135 |
| Msa0744160 | MtrunA17_Chr4g0028931 | 27.246 | 345 | 219 | 4 | 55 | 374 | 10 | 347 | 2.82e-35 | 132 |
| Msa0744160 | MtrunA17_Chr3g0128961 | 26.163 | 344 | 210 | 6 | 73 | 388 | 28 | 355 | 2.16e-31 | 122 |
| Msa0744160 | MtrunA17_Chr3g0128951 | 28.065 | 310 | 201 | 5 | 73 | 376 | 28 | 321 | 5.48e-31 | 120 |
| Msa0744160 | MtrunA17_Chr3g0129401 | 28.662 | 314 | 204 | 8 | 62 | 368 | 20 | 320 | 1.49e-26 | 108 |
| Msa0744160 | MtrunA17_Chr1g0157501 | 32.298 | 322 | 202 | 6 | 59 | 372 | 15 | 328 | 3.21e-26 | 107 |
| Msa0744160 | MtrunA17_Chr5g0393381 | 31.529 | 314 | 200 | 7 | 63 | 368 | 21 | 327 | 5.12e-26 | 107 |
| Msa0744160 | MtrunA17_Chr1g0201531 | 27.124 | 306 | 201 | 5 | 46 | 341 | 4 | 297 | 9.40e-24 | 100 |
| Msa0744160 | MtrunA17_Chr8g0383381 | 26.888 | 331 | 216 | 6 | 62 | 378 | 20 | 338 | 1.07e-20 | 92.0 |
| Msa0744160 | MtrunA17_Chr3g0114581 | 23.364 | 321 | 224 | 6 | 68 | 376 | 27 | 337 | 6.43e-17 | 81.3 |
| Msa0744160 | MtrunA17_Chr1g0160071 | 22.018 | 327 | 233 | 6 | 68 | 386 | 26 | 338 | 2.50e-15 | 76.6 |
| Msa0744160 | MtrunA17_Chr8g0382081 | 29.452 | 292 | 174 | 10 | 68 | 341 | 24 | 301 | 1.13e-11 | 65.1 |
| Msa0744160 | MtrunA17_Chr4g0056661 | 25.965 | 285 | 195 | 8 | 68 | 342 | 65 | 343 | 1.60e-11 | 65.1 |
| Msa0744160 | MtrunA17_Chr2g0312911 | 25.545 | 321 | 205 | 14 | 69 | 369 | 24 | 330 | 1.66e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744160 | AT5G55950.1 | 79.255 | 376 | 72 | 3 | 1 | 373 | 1 | 373 | 0.0 | 603 |
| Msa0744160 | AT5G55950.2 | 85.034 | 294 | 40 | 2 | 1 | 293 | 1 | 291 | 0.0 | 509 |
| Msa0744160 | AT5G55950.4 | 78.165 | 316 | 64 | 2 | 60 | 373 | 1 | 313 | 1.35e-175 | 493 |
| Msa0744160 | AT5G55950.3 | 77.852 | 298 | 61 | 2 | 78 | 373 | 1 | 295 | 2.87e-164 | 463 |
| Msa0744160 | AT5G57100.1 | 64.327 | 342 | 116 | 2 | 7 | 345 | 12 | 350 | 1.37e-159 | 454 |
| Msa0744160 | AT5G57100.2 | 64.138 | 290 | 98 | 2 | 7 | 293 | 12 | 298 | 7.93e-134 | 385 |
| Msa0744160 | AT5G57100.3 | 62.232 | 233 | 82 | 2 | 7 | 236 | 12 | 241 | 3.39e-100 | 298 |
| Msa0744160 | AT5G57100.4 | 62.996 | 227 | 84 | 0 | 150 | 376 | 40 | 266 | 4.21e-95 | 286 |
| Msa0744160 | AT2G30460.1 | 32.143 | 336 | 185 | 9 | 73 | 377 | 28 | 351 | 5.24e-40 | 145 |
| Msa0744160 | AT2G30460.2 | 32.143 | 336 | 185 | 9 | 73 | 377 | 28 | 351 | 5.24e-40 | 145 |
| Msa0744160 | AT1G06890.4 | 32.174 | 345 | 202 | 10 | 43 | 373 | 2 | 328 | 3.61e-39 | 143 |
| Msa0744160 | AT1G06890.3 | 32.174 | 345 | 202 | 10 | 43 | 373 | 2 | 328 | 4.73e-39 | 143 |
| Msa0744160 | AT1G06890.2 | 32.174 | 345 | 202 | 10 | 43 | 373 | 2 | 328 | 5.36e-39 | 143 |
| Msa0744160 | AT1G06890.1 | 32.174 | 345 | 202 | 10 | 43 | 373 | 2 | 328 | 5.36e-39 | 143 |
| Msa0744160 | AT2G30460.3 | 32.484 | 314 | 175 | 8 | 95 | 377 | 23 | 330 | 1.55e-38 | 141 |
| Msa0744160 | AT2G30460.6 | 32.484 | 314 | 175 | 8 | 95 | 377 | 23 | 330 | 1.55e-38 | 141 |
| Msa0744160 | AT2G30460.5 | 32.484 | 314 | 175 | 8 | 95 | 377 | 23 | 330 | 1.55e-38 | 141 |
| Msa0744160 | AT2G28315.1 | 29.605 | 304 | 201 | 4 | 45 | 344 | 2 | 296 | 2.09e-33 | 127 |
| Msa0744160 | AT2G28315.2 | 29.747 | 316 | 206 | 5 | 45 | 356 | 2 | 305 | 7.00e-33 | 125 |
| Msa0744160 | AT5G42420.1 | 31.657 | 338 | 214 | 6 | 59 | 384 | 18 | 350 | 1.61e-29 | 117 |
| Msa0744160 | AT1G21070.1 | 30.178 | 338 | 217 | 7 | 59 | 385 | 18 | 347 | 1.05e-28 | 115 |
| Msa0744160 | AT4G09810.1 | 26.765 | 340 | 228 | 8 | 47 | 376 | 5 | 333 | 8.12e-28 | 112 |
| Msa0744160 | AT1G76670.2 | 29.345 | 351 | 231 | 6 | 44 | 383 | 2 | 346 | 4.27e-27 | 110 |
| Msa0744160 | AT1G76670.1 | 29.345 | 351 | 231 | 6 | 44 | 383 | 2 | 346 | 4.27e-27 | 110 |
| Msa0744160 | AT1G34020.2 | 26.769 | 325 | 217 | 8 | 62 | 376 | 20 | 333 | 2.30e-26 | 108 |
| Msa0744160 | AT1G34020.1 | 26.769 | 325 | 217 | 8 | 62 | 376 | 20 | 333 | 2.30e-26 | 108 |
| Msa0744160 | AT1G34020.3 | 26.769 | 325 | 217 | 8 | 62 | 376 | 20 | 333 | 2.30e-26 | 108 |
| Msa0744160 | AT2G30460.4 | 31.527 | 203 | 118 | 6 | 73 | 266 | 28 | 218 | 4.70e-22 | 96.7 |
| Msa0744160 | AT4G39390.1 | 26.393 | 341 | 235 | 7 | 41 | 376 | 4 | 333 | 2.04e-20 | 91.7 |
| Msa0744160 | AT4G39390.2 | 26.393 | 341 | 235 | 7 | 41 | 376 | 4 | 333 | 2.04e-20 | 91.7 |
| Msa0744160 | AT4G39390.3 | 26.627 | 338 | 232 | 7 | 43 | 375 | 2 | 328 | 4.32e-20 | 90.9 |
| Msa0744160 | AT4G09810.2 | 26.429 | 280 | 188 | 7 | 107 | 376 | 5 | 276 | 5.25e-19 | 86.7 |
| Msa0744160 | AT1G77610.1 | 24.233 | 326 | 223 | 6 | 68 | 385 | 21 | 330 | 6.79e-19 | 87.4 |
| Msa0744160 | AT1G21870.1 | 23.242 | 327 | 227 | 6 | 68 | 386 | 27 | 337 | 1.01e-17 | 84.0 |
| Msa0744160 | AT4G09810.3 | 28.436 | 211 | 144 | 3 | 47 | 257 | 5 | 208 | 3.44e-17 | 80.5 |
| Msa0744160 | AT1G53660.1 | 27.848 | 316 | 196 | 14 | 69 | 369 | 30 | 328 | 2.06e-12 | 68.2 |
| Msa0744160 | AT1G53660.3 | 27.848 | 316 | 196 | 14 | 69 | 369 | 48 | 346 | 2.24e-12 | 68.2 |
| Msa0744160 | AT1G53660.4 | 27.393 | 303 | 190 | 13 | 80 | 369 | 9 | 294 | 9.09e-12 | 65.9 |
| Msa0744160 | AT3G14410.1 | 27.812 | 320 | 196 | 15 | 69 | 367 | 28 | 333 | 7.69e-11 | 63.5 |
Find 95 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGAATTGCAAAGGTAAA+AGG | 0.185056 | 5_1:-64856693 | None:intergenic |
| GTGCTATAGTTGCAATTATA+TGG | 0.196565 | 5_1:+64858802 | Msa0744160:CDS |
| TGAACAAATGTGAGGAAAAT+TGG | 0.206523 | 5_1:-64857723 | None:intergenic |
| GATTTAGAGTTCAATTTATT+TGG | 0.233562 | 5_1:+64858780 | Msa0744160:CDS |
| CAATTTCTTCAAACACTATT+AGG | 0.235582 | 5_1:+64859618 | Msa0744160:three_prime_UTR |
| CAAACACTATTAGGCAATTC+AGG | 0.243025 | 5_1:+64859627 | Msa0744160:three_prime_UTR |
| ATGAATAAGCTTGGTTGTTA+TGG | 0.246697 | 5_1:+64856808 | Msa0744160:exon |
| CGCATTATCCTTCAACTTCA+TGG | 0.275264 | 5_1:+64857527 | Msa0744160:CDS |
| CTAATAGTGTTTGAAGAAAT+TGG | 0.275518 | 5_1:-64859617 | None:intergenic |
| TTCTAGGAGCTTTGATGCCT+TGG | 0.276040 | 5_1:+64859014 | Msa0744160:CDS |
| TGGTCAGGTGCCTTGGCATT+AGG | 0.292303 | 5_1:+64859127 | Msa0744160:CDS |
| ATTTGCACTTGGTGCTGTTA+TGG | 0.295321 | 5_1:+64857839 | Msa0744160:CDS |
| CACTTGTTTGTTGTATGATA+AGG | 0.334154 | 5_1:-64856434 | None:intergenic |
| TGAATAAGCTTGGTTGTTAT+GGG | 0.338495 | 5_1:+64856809 | Msa0744160:exon |
| TTACATCCCACTTGAATGAT+AGG | 0.344646 | 5_1:-64859054 | None:intergenic |
| CTTGGTTGTTATGGGATTGT+TGG | 0.362653 | 5_1:+64856817 | Msa0744160:exon |
| GACAGTGATGCAGGAGAAAC+AGG | 0.365115 | 5_1:+64856881 | Msa0744160:CDS |
| GGTCAGGTGCCTTGGCATTA+GGG | 0.373196 | 5_1:+64859128 | Msa0744160:CDS |
| GATCATCATGGCAAACAAAT+TGG | 0.383428 | 5_1:+64857560 | Msa0744160:CDS |
| GTCCGCAATATCTTTGTTGT+TGG | 0.384372 | 5_1:-64857497 | None:intergenic |
| GAACAAATGTGAGGAAAATT+GGG | 0.386839 | 5_1:-64857722 | None:intergenic |
| AAGACCTGTGTTATTCTGTT+GGG | 0.387128 | 5_1:+64859329 | Msa0744160:CDS |
| ATATGATACTCCAAGATTGA+TGG | 0.389709 | 5_1:+64856625 | Msa0744160:five_prime_UTR |
| ATTTACAGCAGCAAGGAAAC+TGG | 0.392992 | 5_1:+64858862 | Msa0744160:CDS |
| ATAACAACCAAGCTTATTCA+TGG | 0.394404 | 5_1:-64856806 | None:intergenic |
| TGTTACTCCAACAATTGTTC+TGG | 0.395251 | 5_1:+64858533 | Msa0744160:CDS |
| ATATCTTTGTTGTTGGCGCT+TGG | 0.395651 | 5_1:-64857490 | None:intergenic |
| TTCAACTTCATGGTTGCTGT+TGG | 0.397088 | 5_1:+64857537 | Msa0744160:CDS |
| TCAACTTCATGGTTGCTGTT+GGG | 0.398882 | 5_1:+64857538 | Msa0744160:CDS |
| CTGTTATTCGACTCAGATCC+GGG | 0.403312 | 5_1:+64859359 | Msa0744160:CDS |
| GCTTGGCTCCTTCCGAGGTT+CGG | 0.411178 | 5_1:-64857473 | None:intergenic |
| CCTAGAAAGAAAACTGTGAT+AGG | 0.412694 | 5_1:-64858998 | None:intergenic |
| TCAGACAACAATGTTATTGT+TGG | 0.416058 | 5_1:-64859555 | None:intergenic |
| AAAATACAATCCATCAATCT+TGG | 0.417903 | 5_1:-64856635 | None:intergenic |
| ACACCAGCCTCAAGTATAAC+AGG | 0.419149 | 5_1:+64857883 | Msa0744160:CDS |
| TAACAGCAATCTTAGCCATT+TGG | 0.422409 | 5_1:-64858515 | None:intergenic |
| AACTCTGCCAGAACAATTGT+TGG | 0.424008 | 5_1:-64858540 | None:intergenic |
| CTTACAGTGGTCAGGTGCCT+TGG | 0.424187 | 5_1:+64859120 | Msa0744160:CDS |
| TCTTTGTTGTCTTCACTAGC+TGG | 0.443142 | 5_1:-64859515 | None:intergenic |
| CAGTGTTGGTTTCTACCAAA+TGG | 0.447856 | 5_1:+64858500 | Msa0744160:CDS |
| GCTTTGGCTGCTGTATCAGC+TGG | 0.447867 | 5_1:+64858735 | Msa0744160:CDS |
| CAGTTCAGTTCATGCAGTGT+TGG | 0.449065 | 5_1:+64858486 | Msa0744160:intron |
| TTCTCTTCTATATTTGCACT+TGG | 0.450424 | 5_1:+64857828 | Msa0744160:CDS |
| CCGGGGATTGTGAGCATTGG+CGG | 0.454725 | 5_1:+64859377 | Msa0744160:CDS |
| GCAAGGAAACTGGACAGCTT+TGG | 0.461956 | 5_1:+64858872 | Msa0744160:CDS |
| GGGATTGTTGGATTCACTGT+TGG | 0.464531 | 5_1:+64856829 | Msa0744160:CDS |
| TCTGTTATTCGACTCAGATC+CGG | 0.468414 | 5_1:+64859358 | Msa0744160:CDS |
| GGAGCGGTTGTTGCTCTCAC+TGG | 0.471179 | 5_1:+64859398 | Msa0744160:CDS |
| ACAGAATTGCAAAGGTAAAA+GGG | 0.473374 | 5_1:-64856692 | None:intergenic |
| GGATTGTTGGATTCACTGTT+GGG | 0.478433 | 5_1:+64856830 | Msa0744160:CDS |
| TAAGACCTGTGTTATTCTGT+TGG | 0.483155 | 5_1:+64859328 | Msa0744160:CDS |
| TGTTGCTCTCACTGGAATGT+CGG | 0.489922 | 5_1:+64859406 | Msa0744160:CDS |
| CCGCCAATGCTCACAATCCC+CGG | 0.490390 | 5_1:-64859377 | None:intergenic |
| AAAAGAAAAGACAGTGATGC+AGG | 0.490754 | 5_1:+64856872 | Msa0744160:CDS |
| CACTTGAATGATAGGACTCC+TGG | 0.491316 | 5_1:-64859046 | None:intergenic |
| GTGTTTGAAGAAATTGGTTG+TGG | 0.496407 | 5_1:-64859611 | None:intergenic |
| AGTGCAAATATAGAAGAGAA+TGG | 0.515498 | 5_1:-64857825 | None:intergenic |
| AACAGCAACCATGAAGTTGA+AGG | 0.516911 | 5_1:-64857535 | None:intergenic |
| AAAATAATGTCCATTCTTCA+AGG | 0.518365 | 5_1:-64856598 | None:intergenic |
| GTTGAAGGCAAACTATGCTT+CGG | 0.526876 | 5_1:-64859482 | None:intergenic |
| TTGGATTCACTGTTGGGAGA+TGG | 0.530762 | 5_1:+64856836 | Msa0744160:CDS |
| TTGGCGCTTGGCTCCTTCCG+AGG | 0.534697 | 5_1:-64857478 | None:intergenic |
| GATCCGGGGATTGTGAGCAT+TGG | 0.537864 | 5_1:+64859374 | Msa0744160:CDS |
| GAAATTATCAGGTAAAGCAC+TGG | 0.545102 | 5_1:+64857419 | Msa0744160:intron |
| CTTTATTGTTGATAGGTGAT+GGG | 0.545367 | 5_1:+64857681 | Msa0744160:intron |
| TGATAGGTGATGGGAAGAGT+TGG | 0.547749 | 5_1:+64857690 | Msa0744160:intron |
| TTTCTCATTGTAGATTGATG+TGG | 0.552469 | 5_1:+64858966 | Msa0744160:intron |
| ACCTGTGTTATTCTGTTGGG+AGG | 0.560653 | 5_1:+64859332 | Msa0744160:CDS |
| AATGAGCTCCGAACCTCGGA+AGG | 0.566484 | 5_1:+64857465 | Msa0744160:CDS |
| TCTAAGTCCATGAATAAGCT+TGG | 0.571479 | 5_1:+64856799 | Msa0744160:five_prime_UTR |
| TTGTTCACTACATCACTGCA+TGG | 0.573296 | 5_1:+64857739 | Msa0744160:CDS |
| AACAATAACATTGTTGTCTG+AGG | 0.579088 | 5_1:+64859557 | Msa0744160:CDS |
| TGGTCTAATTTACAGCAGCA+AGG | 0.584781 | 5_1:+64858855 | Msa0744160:CDS |
| TTGAAGGATAATGCGACCAC+TGG | 0.591814 | 5_1:-64857519 | None:intergenic |
| CTACAATGAGCTCCGAACCT+CGG | 0.592720 | 5_1:+64857461 | Msa0744160:CDS |
| CGCCAACAACAAAGATATTG+CGG | 0.594240 | 5_1:+64857495 | Msa0744160:CDS |
| CAGGAGTCCTATCATTCAAG+TGG | 0.594492 | 5_1:+64859047 | Msa0744160:CDS |
| AAGCTAAAACAGAATTGCAA+AGG | 0.595572 | 5_1:-64856700 | None:intergenic |
| ATGCCTTGGATTGATCCACC+AGG | 0.606051 | 5_1:+64859028 | Msa0744160:CDS |
| ACATGAACCTGTTATACTTG+AGG | 0.618701 | 5_1:-64857890 | None:intergenic |
| GATTGTGAGCATTGGCGGAG+CGG | 0.623842 | 5_1:+64859382 | Msa0744160:CDS |
| GAACCTGTTATACTTGAGGC+TGG | 0.638511 | 5_1:-64857886 | None:intergenic |
| AAAGTGCCTTGAAAATTGCA+AGG | 0.638843 | 5_1:-64857767 | None:intergenic |
| ACTCCTGGTGGATCAATCCA+AGG | 0.644949 | 5_1:-64859031 | None:intergenic |
| GTAGTCTTACCCTAATGCCA+AGG | 0.645323 | 5_1:-64859137 | None:intergenic |
| TGTAGCAGTTGCAACTGTGT+CGG | 0.648797 | 5_1:+64858758 | Msa0744160:CDS |
| GCCTCCCAACAGAATAACAC+AGG | 0.658463 | 5_1:-64859333 | None:intergenic |
| AGGAGTCCTATCATTCAAGT+GGG | 0.665530 | 5_1:+64859048 | Msa0744160:CDS |
| GGTTGCTGTTGGGATCATCA+TGG | 0.682153 | 5_1:+64857548 | Msa0744160:CDS |
| TGTTATTCGACTCAGATCCG+GGG | 0.684228 | 5_1:+64859360 | Msa0744160:CDS |
| ACAAAGATATTGCGGACCAG+TGG | 0.685300 | 5_1:+64857503 | Msa0744160:CDS |
| TTGAATGATAGGACTCCTGG+TGG | 0.704189 | 5_1:-64859043 | None:intergenic |
| TGATGTAGTGAACAAATGTG+AGG | 0.721156 | 5_1:-64857731 | None:intergenic |
| ATAATGTCCATTCTTCAAGG+AGG | 0.727618 | 5_1:-64856595 | None:intergenic |
| ACCACTGTAAGAGAAAACCG+AGG | 0.773883 | 5_1:-64859108 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATGTAAATTTTGATTTA+CGG | - | chr5_1:64856412-64856431 | None:intergenic | 15.0% |
| !!! | TTTTCTGTTTTTTCAAATTT+TGG | + | chr5_1:64857137-64857156 | Msa0744160:intron | 15.0% |
| !!! | AAATATGAAATATTTTTTGG+AGG | - | chr5_1:64857251-64857270 | None:intergenic | 15.0% |
| !! | TCCAAAAAATATTTCATATT+TGG | + | chr5_1:64857250-64857269 | Msa0744160:intron | 15.0% |
| !!! | ACCAAATATGAAATATTTTT+TGG | - | chr5_1:64857254-64857273 | None:intergenic | 15.0% |
| !! | ATTATGTAATTCAATTATGA+TGG | - | chr5_1:64857343-64857362 | None:intergenic | 15.0% |
| !! | ATATAATTTATTTCCTTGAA+TGG | + | chr5_1:64858283-64858302 | Msa0744160:intron | 15.0% |
| !!! | AGACCATAAAATTTTATTTA+TGG | - | chr5_1:64858841-64858860 | None:intergenic | 15.0% |
| !!! | TAATTTTACAAAAGAGAAAT+TGG | - | chr5_1:64858920-64858939 | None:intergenic | 15.0% |
| !!! | AATTTTGTTCAAGATTATTT+TGG | + | chr5_1:64859714-64859733 | Msa0744160:three_prime_UTR | 15.0% |
| !! | GATATAACTTTATTGTTGAT+AGG | + | chr5_1:64857674-64857693 | Msa0744160:intron | 20.0% |
| !! | TTGGTATGAAAAATAAACAA+AGG | - | chr5_1:64857955-64857974 | None:intergenic | 20.0% |
| !! | TTAAAAGTCAATGACTAATT+TGG | - | chr5_1:64857974-64857993 | None:intergenic | 20.0% |
| !! | ATGTTTCAAATTTGTAAATG+TGG | + | chr5_1:64858047-64858066 | Msa0744160:intron | 20.0% |
| !! | AAAGATTATGTTAATTGTCA+TGG | + | chr5_1:64858175-64858194 | Msa0744160:intron | 20.0% |
| !!! | TTGTCATGGATTTTTTTTAA+AGG | + | chr5_1:64858189-64858208 | Msa0744160:intron | 20.0% |
| !!! | TTTTTAAAGGTTAATTGTGA+TGG | + | chr5_1:64858202-64858221 | Msa0744160:intron | 20.0% |
| !! | AAAAACCATTTCTTCAAAAA+AGG | + | chr5_1:64858575-64858594 | Msa0744160:CDS | 20.0% |
| !! | CATAAACCATTTCAAATATA+TGG | + | chr5_1:64858637-64858656 | Msa0744160:intron | 20.0% |
| !!! | TCTTTTCCATATATTTGAAA+TGG | - | chr5_1:64858646-64858665 | None:intergenic | 20.0% |
| !! | GTGCATAAAAAATAATTGTA+TGG | - | chr5_1:64858675-64858694 | None:intergenic | 20.0% |
| !!! | GATTTAGAGTTCAATTTATT+TGG | + | chr5_1:64858780-64858799 | Msa0744160:CDS | 20.0% |
| !!! | AAAATTTTATTTATGGCACT+TGG | - | chr5_1:64858834-64858853 | None:intergenic | 20.0% |
| !!! | GTGCCATAAATAAAATTTTA+TGG | + | chr5_1:64858835-64858854 | Msa0744160:CDS | 20.0% |
| !! | ATATTATTATCAATCAATGC+AGG | + | chr5_1:64859267-64859286 | Msa0744160:intron | 20.0% |
| !! | TATTATTATCAATCAATGCA+GGG | + | chr5_1:64859268-64859287 | Msa0744160:intron | 20.0% |
| ! | AAAATAATGTCCATTCTTCA+AGG | - | chr5_1:64856601-64856620 | None:intergenic | 25.0% |
| ! | AAAATACAATCCATCAATCT+TGG | - | chr5_1:64856638-64856657 | None:intergenic | 25.0% |
| ! | CATTTGTGTTCAATTCTTAA+TGG | + | chr5_1:64857028-64857047 | Msa0744160:intron | 25.0% |
| !! | TTTTCAAACTGCTGATATTT+AGG | - | chr5_1:64857092-64857111 | None:intergenic | 25.0% |
| ! | TAAATATCAGCAGTTTGAAA+AGG | + | chr5_1:64857091-64857110 | Msa0744160:intron | 25.0% |
| ! | AAATATCAGCAGTTTGAAAA+GGG | + | chr5_1:64857092-64857111 | Msa0744160:intron | 25.0% |
| !!! | TATTTGTTATGCTAAGAGTA+AGG | + | chr5_1:64857164-64857183 | Msa0744160:intron | 25.0% |
| ! | GTAAGGTATAAATCTGAATT+TGG | + | chr5_1:64857181-64857200 | Msa0744160:intron | 25.0% |
| !! | AGACTTAATCTTTTATTGCT+TGG | - | chr5_1:64857225-64857244 | None:intergenic | 25.0% |
| ! | TAATGATGCTGATCATAAAT+AGG | + | chr5_1:64857359-64857378 | Msa0744160:intron | 25.0% |
| ! | AATGATGCTGATCATAAATA+GGG | + | chr5_1:64857360-64857379 | Msa0744160:intron | 25.0% |
| ! | ATTAGGTCAGTAATGAAAAT+TGG | - | chr5_1:64858016-64858035 | None:intergenic | 25.0% |
| ! | AAACATAATGACTGAACATT+AGG | - | chr5_1:64858033-64858052 | None:intergenic | 25.0% |
| !!! | TGTCAACATGGATTTAATTT+TGG | - | chr5_1:64858121-64858140 | None:intergenic | 25.0% |
| ! | CATAGATGAAGAATTAAGTT+TGG | + | chr5_1:64858330-64858349 | Msa0744160:intron | 25.0% |
| !!! | TTTGACCTTTTTTGAAGAAA+TGG | - | chr5_1:64858583-64858602 | None:intergenic | 25.0% |
| ! | GCACTAATTAATCATGTAAT+TGG | + | chr5_1:64858691-64858710 | Msa0744160:intron | 25.0% |
| !!! | TGTTGTGTTTTGTTTAAGTA+AGG | + | chr5_1:64859229-64859248 | Msa0744160:intron | 25.0% |
| ! | CTAATAGTGTTTGAAGAAAT+TGG | - | chr5_1:64859620-64859639 | None:intergenic | 25.0% |
| ! | CAATTTCTTCAAACACTATT+AGG | + | chr5_1:64859618-64859637 | Msa0744160:three_prime_UTR | 25.0% |
| !! | CACTTGTTTGTTGTATGATA+AGG | - | chr5_1:64856437-64856456 | None:intergenic | 30.0% |
| ATATGATACTCCAAGATTGA+TGG | + | chr5_1:64856625-64856644 | Msa0744160:five_prime_UTR | 30.0% | |
| !! | GGATTGTATTTTAAGCAACT+TGG | + | chr5_1:64856646-64856665 | Msa0744160:five_prime_UTR | 30.0% |
| ACAGAATTGCAAAGGTAAAA+GGG | - | chr5_1:64856695-64856714 | None:intergenic | 30.0% | |
| AACAGAATTGCAAAGGTAAA+AGG | - | chr5_1:64856696-64856715 | None:intergenic | 30.0% | |
| AAGCTAAAACAGAATTGCAA+AGG | - | chr5_1:64856703-64856722 | None:intergenic | 30.0% | |
| ! | ACAGAACTGTGTTTTACAAA+AGG | + | chr5_1:64856741-64856760 | Msa0744160:five_prime_UTR | 30.0% |
| ATAACAACCAAGCTTATTCA+TGG | - | chr5_1:64856809-64856828 | None:intergenic | 30.0% | |
| ATGAATAAGCTTGGTTGTTA+TGG | + | chr5_1:64856808-64856827 | Msa0744160:exon | 30.0% | |
| TGAATAAGCTTGGTTGTTAT+GGG | + | chr5_1:64856809-64856828 | Msa0744160:exon | 30.0% | |
| ATGGAACATCTAATGAAAGT+AGG | - | chr5_1:64857324-64857343 | None:intergenic | 30.0% | |
| TCATCATGGTTGAAATTATC+AGG | + | chr5_1:64857408-64857427 | Msa0744160:intron | 30.0% | |
| AACATACATGCAATATGAGA+AGG | - | chr5_1:64857598-64857617 | None:intergenic | 30.0% | |
| ! | ACTTTATTGTTGATAGGTGA+TGG | + | chr5_1:64857680-64857699 | Msa0744160:intron | 30.0% |
| ! | CTTTATTGTTGATAGGTGAT+GGG | + | chr5_1:64857681-64857700 | Msa0744160:intron | 30.0% |
| GAACAAATGTGAGGAAAATT+GGG | - | chr5_1:64857725-64857744 | None:intergenic | 30.0% | |
| TGAACAAATGTGAGGAAAAT+TGG | - | chr5_1:64857726-64857745 | None:intergenic | 30.0% | |
| AGTGCAAATATAGAAGAGAA+TGG | - | chr5_1:64857828-64857847 | None:intergenic | 30.0% | |
| TTCTCTTCTATATTTGCACT+TGG | + | chr5_1:64857828-64857847 | Msa0744160:CDS | 30.0% | |
| TTTGCTCTAACATGTTTATC+AGG | + | chr5_1:64857914-64857933 | Msa0744160:intron | 30.0% | |
| AAATCTTACTTGACCATTCA+AGG | - | chr5_1:64858299-64858318 | None:intergenic | 30.0% | |
| ! | GAATGGTCAAGTAAGATTTT+TGG | + | chr5_1:64858300-64858319 | Msa0744160:intron | 30.0% |
| AACCTAATTGAAACTTAAGC+TGG | + | chr5_1:64858421-64858440 | Msa0744160:intron | 30.0% | |
| GTGCTATAGTTGCAATTATA+TGG | + | chr5_1:64858802-64858821 | Msa0744160:CDS | 30.0% | |
| TTTCTCATTGTAGATTGATG+TGG | + | chr5_1:64858966-64858985 | Msa0744160:intron | 30.0% | |
| GTAGAATTCTGTGTCAAAAA+GGG | - | chr5_1:64859200-64859219 | None:intergenic | 30.0% | |
| AGTAGAATTCTGTGTCAAAA+AGG | - | chr5_1:64859201-64859220 | None:intergenic | 30.0% | |
| TCAGACAACAATGTTATTGT+TGG | - | chr5_1:64859558-64859577 | None:intergenic | 30.0% | |
| AACAATAACATTGTTGTCTG+AGG | + | chr5_1:64859557-64859576 | Msa0744160:CDS | 30.0% | |
| TAAAAAACCTTGCTGCAAAA+TGG | - | chr5_1:64859660-64859679 | None:intergenic | 30.0% | |
| AAAAACTCCTCCTTGAAGAA+TGG | + | chr5_1:64856588-64856607 | Msa0744160:five_prime_UTR | 35.0% | |
| ATAATGTCCATTCTTCAAGG+AGG | - | chr5_1:64856598-64856617 | None:intergenic | 35.0% | |
| TCTAAGTCCATGAATAAGCT+TGG | + | chr5_1:64856799-64856818 | Msa0744160:five_prime_UTR | 35.0% | |
| AAAAGAAAAGACAGTGATGC+AGG | + | chr5_1:64856872-64856891 | Msa0744160:CDS | 35.0% | |
| TATTCCTGACTCTCTATGAT+TGG | + | chr5_1:64856998-64857017 | Msa0744160:intron | 35.0% | |
| GAAATTATCAGGTAAAGCAC+TGG | + | chr5_1:64857419-64857438 | Msa0744160:intron | 35.0% | |
| GATCATCATGGCAAACAAAT+TGG | + | chr5_1:64857560-64857579 | Msa0744160:CDS | 35.0% | |
| TGATGTAGTGAACAAATGTG+AGG | - | chr5_1:64857734-64857753 | None:intergenic | 35.0% | |
| ! | GATTCTCCTTGCAATTTTCA+AGG | + | chr5_1:64857761-64857780 | Msa0744160:CDS | 35.0% |
| ! | AAAGTGCCTTGAAAATTGCA+AGG | - | chr5_1:64857770-64857789 | None:intergenic | 35.0% |
| !! | TGCAATTTTCAAGGCACTTT+CGG | + | chr5_1:64857770-64857789 | Msa0744160:CDS | 35.0% |
| !!! | AATGGAGTTGTTTTAGATGG+AGG | - | chr5_1:64857810-64857829 | None:intergenic | 35.0% |
| !!! | GAGAATGGAGTTGTTTTAGA+TGG | - | chr5_1:64857813-64857832 | None:intergenic | 35.0% |
| ACATGAACCTGTTATACTTG+AGG | - | chr5_1:64857893-64857912 | None:intergenic | 35.0% | |
| !! | TGACTTTGTTGTTGTCAACA+TGG | - | chr5_1:64858133-64858152 | None:intergenic | 35.0% |
| CACCAGCTTAAGTTTCAATT+AGG | - | chr5_1:64858426-64858445 | None:intergenic | 35.0% | |
| !! | TGGTGAAGTTTTGTCTAGTT+TGG | + | chr5_1:64858441-64858460 | Msa0744160:intron | 35.0% |
| TAACAGCAATCTTAGCCATT+TGG | - | chr5_1:64858518-64858537 | None:intergenic | 35.0% | |
| TGTTACTCCAACAATTGTTC+TGG | + | chr5_1:64858533-64858552 | Msa0744160:CDS | 35.0% | |
| TAATTGGAATGCAATGATCC+AGG | + | chr5_1:64858707-64858726 | Msa0744160:intron | 35.0% | |
| CCTAGAAAGAAAACTGTGAT+AGG | - | chr5_1:64859001-64859020 | None:intergenic | 35.0% | |
| ! | CCTATCACAGTTTTCTTTCT+AGG | + | chr5_1:64858998-64859017 | Msa0744160:CDS | 35.0% |
| TTACATCCCACTTGAATGAT+AGG | - | chr5_1:64859057-64859076 | None:intergenic | 35.0% | |
| !! | ATTTTGATATCTGCTCTCCT+CGG | + | chr5_1:64859091-64859110 | Msa0744160:CDS | 35.0% |
| ! | TAAGACCTGTGTTATTCTGT+TGG | + | chr5_1:64859328-64859347 | Msa0744160:CDS | 35.0% |
| ! | AAGACCTGTGTTATTCTGTT+GGG | + | chr5_1:64859329-64859348 | Msa0744160:CDS | 35.0% |
| GTGTTTGAAGAAATTGGTTG+TGG | - | chr5_1:64859614-64859633 | None:intergenic | 35.0% | |
| CAAACACTATTAGGCAATTC+AGG | + | chr5_1:64859627-64859646 | Msa0744160:three_prime_UTR | 35.0% | |
| ! | TTCAATTCCATTTTGCAGCA+AGG | + | chr5_1:64859650-64859669 | Msa0744160:three_prime_UTR | 35.0% |
| CTTGGTTGTTATGGGATTGT+TGG | + | chr5_1:64856817-64856836 | Msa0744160:exon | 40.0% | |
| GGATTGTTGGATTCACTGTT+GGG | + | chr5_1:64856830-64856849 | Msa0744160:CDS | 40.0% | |
| CATAGAGAGTCAGGAATACA+TGG | - | chr5_1:64856996-64857015 | None:intergenic | 40.0% | |
| AAAGCCAATCATAGAGAGTC+AGG | - | chr5_1:64857005-64857024 | None:intergenic | 40.0% | |
| CATGATGAGAACACTGCATT+AGG | - | chr5_1:64857396-64857415 | None:intergenic | 40.0% | |
| CTAATGCAGTGTTCTCATCA+TGG | + | chr5_1:64857394-64857413 | Msa0744160:intron | 40.0% | |
| !! | ATATCTTTGTTGTTGGCGCT+TGG | - | chr5_1:64857493-64857512 | None:intergenic | 40.0% |
| CGCCAACAACAAAGATATTG+CGG | + | chr5_1:64857495-64857514 | Msa0744160:CDS | 40.0% | |
| ! | GTCCGCAATATCTTTGTTGT+TGG | - | chr5_1:64857500-64857519 | None:intergenic | 40.0% |
| CGCATTATCCTTCAACTTCA+TGG | + | chr5_1:64857527-64857546 | Msa0744160:CDS | 40.0% | |
| AACAGCAACCATGAAGTTGA+AGG | - | chr5_1:64857538-64857557 | None:intergenic | 40.0% | |
| TTCAACTTCATGGTTGCTGT+TGG | + | chr5_1:64857537-64857556 | Msa0744160:CDS | 40.0% | |
| ! | TCAACTTCATGGTTGCTGTT+GGG | + | chr5_1:64857538-64857557 | Msa0744160:CDS | 40.0% |
| TTGTTCACTACATCACTGCA+TGG | + | chr5_1:64857739-64857758 | Msa0744160:CDS | 40.0% | |
| !! | ATTTGCACTTGGTGCTGTTA+TGG | + | chr5_1:64857839-64857858 | Msa0744160:CDS | 40.0% |
| GAACTGTCAGCAAAAAGGAA+AGG | - | chr5_1:64858472-64858491 | None:intergenic | 40.0% | |
| GAACTGAACTGTCAGCAAAA+AGG | - | chr5_1:64858477-64858496 | None:intergenic | 40.0% | |
| !! | CAGTGTTGGTTTCTACCAAA+TGG | + | chr5_1:64858500-64858519 | Msa0744160:CDS | 40.0% |
| AACTCTGCCAGAACAATTGT+TGG | - | chr5_1:64858543-64858562 | None:intergenic | 40.0% | |
| ! | GAATGCAATGATCCAGGTTT+TGG | + | chr5_1:64858713-64858732 | Msa0744160:intron | 40.0% |
| !!! | AATGATCCAGGTTTTGGCTT+TGG | + | chr5_1:64858719-64858738 | Msa0744160:intron | 40.0% |
| TGGTCTAATTTACAGCAGCA+AGG | + | chr5_1:64858855-64858874 | Msa0744160:CDS | 40.0% | |
| ATTTACAGCAGCAAGGAAAC+TGG | + | chr5_1:64858862-64858881 | Msa0744160:CDS | 40.0% | |
| AGGAGTCCTATCATTCAAGT+GGG | + | chr5_1:64859048-64859067 | Msa0744160:CDS | 40.0% | |
| !!! | GCTACGACTCATGTTGTTTT+AGG | + | chr5_1:64859299-64859318 | Msa0744160:CDS | 40.0% |
| TCTGTTATTCGACTCAGATC+CGG | + | chr5_1:64859358-64859377 | Msa0744160:CDS | 40.0% | |
| GTTGAAGGCAAACTATGCTT+CGG | - | chr5_1:64859485-64859504 | None:intergenic | 40.0% | |
| ! | TCTTTGTTGTCTTCACTAGC+TGG | - | chr5_1:64859518-64859537 | None:intergenic | 40.0% |
| GGGATTGTTGGATTCACTGT+TGG | + | chr5_1:64856829-64856848 | Msa0744160:CDS | 45.0% | |
| TTGGATTCACTGTTGGGAGA+TGG | + | chr5_1:64856836-64856855 | Msa0744160:CDS | 45.0% | |
| AGTCAGGAATACATGGAAGG+AGG | - | chr5_1:64856989-64857008 | None:intergenic | 45.0% | |
| GAGAGTCAGGAATACATGGA+AGG | - | chr5_1:64856992-64857011 | None:intergenic | 45.0% | |
| ACAAAGATATTGCGGACCAG+TGG | + | chr5_1:64857503-64857522 | Msa0744160:CDS | 45.0% | |
| TTGAAGGATAATGCGACCAC+TGG | - | chr5_1:64857522-64857541 | None:intergenic | 45.0% | |
| !! | TGATAGGTGATGGGAAGAGT+TGG | + | chr5_1:64857690-64857709 | Msa0744160:intron | 45.0% |
| !! | GTTTTAGATGGAGGAGACAC+AGG | - | chr5_1:64857801-64857820 | None:intergenic | 45.0% |
| ! | GCTGTTATGGCTTTTGCATC+TGG | + | chr5_1:64857852-64857871 | Msa0744160:CDS | 45.0% |
| ACACCAGCCTCAAGTATAAC+AGG | + | chr5_1:64857883-64857902 | Msa0744160:CDS | 45.0% | |
| GAACCTGTTATACTTGAGGC+TGG | - | chr5_1:64857889-64857908 | None:intergenic | 45.0% | |
| CAGTTCAGTTCATGCAGTGT+TGG | + | chr5_1:64858486-64858505 | Msa0744160:intron | 45.0% | |
| TGTAGCAGTTGCAACTGTGT+CGG | + | chr5_1:64858758-64858777 | Msa0744160:CDS | 45.0% | |
| ! | TTCTAGGAGCTTTGATGCCT+TGG | + | chr5_1:64859014-64859033 | Msa0744160:CDS | 45.0% |
| TTGAATGATAGGACTCCTGG+TGG | - | chr5_1:64859046-64859065 | None:intergenic | 45.0% | |
| CACTTGAATGATAGGACTCC+TGG | - | chr5_1:64859049-64859068 | None:intergenic | 45.0% | |
| CAGGAGTCCTATCATTCAAG+TGG | + | chr5_1:64859047-64859066 | Msa0744160:CDS | 45.0% | |
| ! | TCCTCGGTTTTCTCTTACAG+TGG | + | chr5_1:64859107-64859126 | Msa0744160:CDS | 45.0% |
| ACCACTGTAAGAGAAAACCG+AGG | - | chr5_1:64859111-64859130 | None:intergenic | 45.0% | |
| ! | GGTTTTCTCTTACAGTGGTC+AGG | + | chr5_1:64859112-64859131 | Msa0744160:CDS | 45.0% |
| ! | GTAGTCTTACCCTAATGCCA+AGG | - | chr5_1:64859140-64859159 | None:intergenic | 45.0% |
| ! | ACCTGTGTTATTCTGTTGGG+AGG | + | chr5_1:64859332-64859351 | Msa0744160:CDS | 45.0% |
| CTGTTATTCGACTCAGATCC+GGG | + | chr5_1:64859359-64859378 | Msa0744160:CDS | 45.0% | |
| TGTTATTCGACTCAGATCCG+GGG | + | chr5_1:64859360-64859379 | Msa0744160:CDS | 45.0% | |
| TGTTGCTCTCACTGGAATGT+CGG | + | chr5_1:64859406-64859425 | Msa0744160:CDS | 45.0% | |
| !!! | GCTGGTTTTTGCTGTGTTGA+AGG | - | chr5_1:64859500-64859519 | None:intergenic | 45.0% |
| !!! | ATTTGATTTATATAAAAAAT+TGG | + | chr5_1:64856957-64856976 | Msa0744160:intron | 5.0% |
| GACAGTGATGCAGGAGAAAC+AGG | + | chr5_1:64856881-64856900 | Msa0744160:CDS | 50.0% | |
| CTACAATGAGCTCCGAACCT+CGG | + | chr5_1:64857461-64857480 | Msa0744160:CDS | 50.0% | |
| ! | GGTTGCTGTTGGGATCATCA+TGG | + | chr5_1:64857548-64857567 | Msa0744160:CDS | 50.0% |
| GCAAGGAAACTGGACAGCTT+TGG | + | chr5_1:64858872-64858891 | Msa0744160:CDS | 50.0% | |
| ATGCCTTGGATTGATCCACC+AGG | + | chr5_1:64859028-64859047 | Msa0744160:CDS | 50.0% | |
| ! | ACTCCTGGTGGATCAATCCA+AGG | - | chr5_1:64859034-64859053 | None:intergenic | 50.0% |
| GCCTCCCAACAGAATAACAC+AGG | - | chr5_1:64859336-64859355 | None:intergenic | 50.0% | |
| AATGAGCTCCGAACCTCGGA+AGG | + | chr5_1:64857465-64857484 | Msa0744160:CDS | 55.0% | |
| CAGCAGCCAAAGCCAAAACC+TGG | - | chr5_1:64858728-64858747 | None:intergenic | 55.0% | |
| GCTTTGGCTGCTGTATCAGC+TGG | + | chr5_1:64858735-64858754 | Msa0744160:CDS | 55.0% | |
| CTTACAGTGGTCAGGTGCCT+TGG | + | chr5_1:64859120-64859139 | Msa0744160:CDS | 55.0% | |
| TGGTCAGGTGCCTTGGCATT+AGG | + | chr5_1:64859127-64859146 | Msa0744160:CDS | 55.0% | |
| GGTCAGGTGCCTTGGCATTA+GGG | + | chr5_1:64859128-64859147 | Msa0744160:CDS | 55.0% | |
| GATCCGGGGATTGTGAGCAT+TGG | + | chr5_1:64859374-64859393 | Msa0744160:CDS | 55.0% | |
| !! | GATTGTGAGCATTGGCGGAG+CGG | + | chr5_1:64859382-64859401 | Msa0744160:CDS | 55.0% |
| GCTTGGCTCCTTCCGAGGTT+CGG | - | chr5_1:64857476-64857495 | None:intergenic | 60.0% | |
| CCGCCAATGCTCACAATCCC+CGG | - | chr5_1:64859380-64859399 | None:intergenic | 60.0% | |
| !! | CCGGGGATTGTGAGCATTGG+CGG | + | chr5_1:64859377-64859396 | Msa0744160:CDS | 60.0% |
| GGAGCGGTTGTTGCTCTCAC+TGG | + | chr5_1:64859398-64859417 | Msa0744160:CDS | 60.0% | |
| TTGGCGCTTGGCTCCTTCCG+AGG | - | chr5_1:64857481-64857500 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 64856404 | 64859737 | 64856404 | ID=Msa0744160;Name=Msa0744160 |
| chr5_1 | mRNA | 64856404 | 64859737 | 64856404 | ID=Msa0744160-mRNA-1;Parent=Msa0744160;Name=Msa0744160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=423|0.83|0.85|1|1|1|7|160|388 |
| chr5_1 | exon | 64856404 | 64856902 | 64856404 | ID=Msa0744160-mRNA-1:exon:19186;Parent=Msa0744160-mRNA-1 |
| chr5_1 | exon | 64857430 | 64857581 | 64857430 | ID=Msa0744160-mRNA-1:exon:19187;Parent=Msa0744160-mRNA-1 |
| chr5_1 | exon | 64857696 | 64857904 | 64857696 | ID=Msa0744160-mRNA-1:exon:19188;Parent=Msa0744160-mRNA-1 |
| chr5_1 | exon | 64858494 | 64858596 | 64858494 | ID=Msa0744160-mRNA-1:exon:19189;Parent=Msa0744160-mRNA-1 |
| chr5_1 | exon | 64858729 | 64858895 | 64858729 | ID=Msa0744160-mRNA-1:exon:19190;Parent=Msa0744160-mRNA-1 |
| chr5_1 | exon | 64858979 | 64859149 | 64858979 | ID=Msa0744160-mRNA-1:exon:19191;Parent=Msa0744160-mRNA-1 |
| chr5_1 | exon | 64859289 | 64859737 | 64859289 | ID=Msa0744160-mRNA-1:exon:19192;Parent=Msa0744160-mRNA-1 |
| chr5_1 | five_prime_UTR | 64856404 | 64856826 | 64856404 | ID=Msa0744160-mRNA-1:five_prime_utr;Parent=Msa0744160-mRNA-1 |
| chr5_1 | CDS | 64856827 | 64856902 | 64856827 | ID=Msa0744160-mRNA-1:cds;Parent=Msa0744160-mRNA-1 |
| chr5_1 | CDS | 64857430 | 64857581 | 64857430 | ID=Msa0744160-mRNA-1:cds;Parent=Msa0744160-mRNA-1 |
| chr5_1 | CDS | 64857696 | 64857904 | 64857696 | ID=Msa0744160-mRNA-1:cds;Parent=Msa0744160-mRNA-1 |
| chr5_1 | CDS | 64858494 | 64858596 | 64858494 | ID=Msa0744160-mRNA-1:cds;Parent=Msa0744160-mRNA-1 |
| chr5_1 | CDS | 64858729 | 64858895 | 64858729 | ID=Msa0744160-mRNA-1:cds;Parent=Msa0744160-mRNA-1 |
| chr5_1 | CDS | 64858979 | 64859149 | 64858979 | ID=Msa0744160-mRNA-1:cds;Parent=Msa0744160-mRNA-1 |
| chr5_1 | CDS | 64859289 | 64859577 | 64859289 | ID=Msa0744160-mRNA-1:cds;Parent=Msa0744160-mRNA-1 |
| chr5_1 | three_prime_UTR | 64859578 | 64859737 | 64859578 | ID=Msa0744160-mRNA-1:three_prime_utr;Parent=Msa0744160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
