Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091830 | XP_024627279.2 | 84.760 | 479 | 31 | 4 | 1 | 472 | 1 | 444 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091830 | A0A396GSG1 | 84.760 | 479 | 31 | 4 | 1 | 472 | 1 | 444 | 0.0 | 798 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa1091830 | 0.800294 | 1.542176e-48 | -8.615850e-47 |
| Msa0050380 | Msa1091830 | 0.809661 | 1.694718e-50 | -8.615850e-47 |
| Msa0092990 | Msa1091830 | 0.815886 | 7.344990e-52 | -8.615850e-47 |
| Msa0096450 | Msa1091830 | 0.800331 | 1.515558e-48 | -8.615850e-47 |
| Msa0102120 | Msa1091830 | 0.843484 | 1.361981e-58 | -8.615850e-47 |
| Msa0115810 | Msa1091830 | 0.807190 | 5.703596e-50 | -8.615850e-47 |
| Msa0117770 | Msa1091830 | 0.811684 | 6.191163e-51 | -8.615850e-47 |
| Msa0613460 | Msa1091830 | 0.815557 | 8.696183e-52 | -8.615850e-47 |
| Msa0654010 | Msa1091830 | 0.807597 | 4.675801e-50 | -8.615850e-47 |
| Msa0658570 | Msa1091830 | 0.805035 | 1.621313e-49 | -8.615850e-47 |
| Msa0662650 | Msa1091830 | 0.825918 | 3.606706e-54 | -8.615850e-47 |
| Msa0672570 | Msa1091830 | 0.803118 | 4.060415e-49 | -8.615850e-47 |
| Msa0690440 | Msa1091830 | 0.801976 | 6.983421e-49 | -8.615850e-47 |
| Msa0698930 | Msa1091830 | 0.802312 | 5.956461e-49 | -8.615850e-47 |
| Msa0701010 | Msa1091830 | 0.801361 | 9.336487e-49 | -8.615850e-47 |
| Msa0708860 | Msa1091830 | 0.830916 | 2.243331e-55 | -8.615850e-47 |
| Msa0716530 | Msa1091830 | 0.804549 | 2.048369e-49 | -8.615850e-47 |
| Msa0731180 | Msa1091830 | 0.806268 | 8.934237e-50 | -8.615850e-47 |
| Msa0744170 | Msa1091830 | -0.822393 | 2.426789e-53 | -8.615850e-47 |
| Msa0766630 | Msa1091830 | 0.801117 | 1.047284e-48 | -8.615850e-47 |
| Msa0767080 | Msa1091830 | 0.809907 | 1.500367e-50 | -8.615850e-47 |
| Msa0777230 | Msa1091830 | 0.821831 | 3.275145e-53 | -8.615850e-47 |
| Msa0798370 | Msa1091830 | 0.803013 | 4.268092e-49 | -8.615850e-47 |
| Msa0827470 | Msa1091830 | 0.800873 | 1.175150e-48 | -8.615850e-47 |
| Msa0122590 | Msa1091830 | 0.812467 | 4.178464e-51 | -8.615850e-47 |
| Msa0141620 | Msa1091830 | 0.807564 | 4.753122e-50 | -8.615850e-47 |
| Msa0163780 | Msa1091830 | 0.814488 | 1.501594e-51 | -8.615850e-47 |
| Msa0166870 | Msa1091830 | 0.809628 | 1.722404e-50 | -8.615850e-47 |
| Msa0178860 | Msa1091830 | -0.821318 | 4.302342e-53 | -8.615850e-47 |
| Msa0188460 | Msa1091830 | 0.804611 | 1.987541e-49 | -8.615850e-47 |
| Msa0223910 | Msa1091830 | 0.806787 | 6.943229e-50 | -8.615850e-47 |
| Msa0233300 | Msa1091830 | 0.813589 | 2.371403e-51 | -8.615850e-47 |
| Msa0365490 | Msa1091830 | 0.806055 | 9.906798e-50 | -8.615850e-47 |
| Msa0376590 | Msa1091830 | 0.816324 | 5.864417e-52 | -8.615850e-47 |
| Msa0379640 | Msa1091830 | 0.818662 | 1.743556e-52 | -8.615850e-47 |
| Msa0389320 | Msa1091830 | 0.800523 | 1.384640e-48 | -8.615850e-47 |
| Msa0389810 | Msa1091830 | 0.801810 | 7.554473e-49 | -8.615850e-47 |
| Msa0394530 | Msa1091830 | 0.820257 | 7.546297e-53 | -8.615850e-47 |
| Msa0426900 | Msa1091830 | 0.817982 | 2.485520e-52 | -8.615850e-47 |
| Msa0431670 | Msa1091830 | 0.812995 | 3.202361e-51 | -8.615850e-47 |
| Msa0438200 | Msa1091830 | 0.803731 | 3.030487e-49 | -8.615850e-47 |
| Msa0443920 | Msa1091830 | 0.803617 | 3.200586e-49 | -8.615850e-47 |
| Msa0444090 | Msa1091830 | 0.820188 | 7.828529e-53 | -8.615850e-47 |
| Msa0458440 | Msa1091830 | 0.827951 | 1.177711e-54 | -8.615850e-47 |
| Msa0466390 | Msa1091830 | 0.822686 | 2.074026e-53 | -8.615850e-47 |
| Msa0473240 | Msa1091830 | 0.810499 | 1.118217e-50 | -8.615850e-47 |
| Msa0982270 | Msa1091830 | 0.812569 | 3.968720e-51 | -8.615850e-47 |
| Msa0990960 | Msa1091830 | 0.802706 | 4.939689e-49 | -8.615850e-47 |
| Msa0992490 | Msa1091830 | -0.805590 | 1.240242e-49 | -8.615850e-47 |
| Msa0998690 | Msa1091830 | 0.806982 | 6.315129e-50 | -8.615850e-47 |
| Msa1002480 | Msa1091830 | 0.800883 | 1.169379e-48 | -8.615850e-47 |
| Msa1014540 | Msa1091830 | 0.823023 | 1.731419e-53 | -8.615850e-47 |
| Msa1039880 | Msa1091830 | 0.823441 | 1.383118e-53 | -8.615850e-47 |
| Msa1046300 | Msa1091830 | 0.830705 | 2.526636e-55 | -8.615850e-47 |
| Msa1065490 | Msa1091830 | 0.800576 | 1.350959e-48 | -8.615850e-47 |
| Msa1073070 | Msa1091830 | -0.808725 | 2.689365e-50 | -8.615850e-47 |
| Msa1075080 | Msa1091830 | -0.829140 | 6.081280e-55 | -8.615850e-47 |
| Msa1075220 | Msa1091830 | -0.829052 | 6.388020e-55 | -8.615850e-47 |
| Msa1081590 | Msa1091830 | 0.806966 | 6.363518e-50 | -8.615850e-47 |
| Msa1082500 | Msa1091830 | 0.816846 | 4.479113e-52 | -8.615850e-47 |
| Msa1084260 | Msa1091830 | 0.807173 | 5.753249e-50 | -8.615850e-47 |
| Msa1085300 | Msa1091830 | 0.805510 | 1.289252e-49 | -8.615850e-47 |
| Msa1090260 | Msa1091830 | 0.803312 | 3.702787e-49 | -8.615850e-47 |
| Msa1091830 | Msa1092090 | 0.819000 | 1.461088e-52 | -8.615850e-47 |
| Msa1091830 | Msa1100480 | 0.814634 | 1.394420e-51 | -8.615850e-47 |
| Msa1091830 | Msa1116130 | -0.803627 | 3.185562e-49 | -8.615850e-47 |
| Msa1091830 | Msa1119480 | 0.822953 | 1.797544e-53 | -8.615850e-47 |
| Msa1091830 | Msa1124540 | -0.808148 | 3.570453e-50 | -8.615850e-47 |
| Msa1091830 | Msa1130270 | -0.803809 | 2.919297e-49 | -8.615850e-47 |
| Msa1091830 | Msa1139000 | -0.806411 | 8.332626e-50 | -8.615850e-47 |
| Msa1091830 | Msa1162550 | -0.847102 | 1.429702e-59 | -8.615850e-47 |
| Msa1091830 | Msa1174040 | 0.812561 | 3.984229e-51 | -8.615850e-47 |
| Msa1091830 | Msa1183100 | -0.811976 | 5.347791e-51 | -8.615850e-47 |
| Msa1091830 | Msa1195920 | 0.800705 | 1.271305e-48 | -8.615850e-47 |
| Msa1091830 | Msa1211140 | -0.803188 | 3.926469e-49 | -8.615850e-47 |
| Msa1091830 | Msa1228590 | 0.810548 | 1.091159e-50 | -8.615850e-47 |
| Msa1091830 | Msa1233500 | 0.830455 | 2.908607e-55 | -8.615850e-47 |
| Msa1091830 | Msa1233890 | 0.800435 | 1.443157e-48 | -8.615850e-47 |
| Msa1091830 | Msa1241570 | 0.824921 | 6.212396e-54 | -8.615850e-47 |
| Msa1091830 | Msa1279210 | 0.801896 | 7.251459e-49 | -8.615850e-47 |
| Msa1091830 | Msa1284680 | 0.806008 | 1.013301e-49 | -8.615850e-47 |
| Msa1091830 | Msa1306750 | 0.803763 | 2.985074e-49 | -8.615850e-47 |
| Msa1091830 | Msa1308590 | 0.802641 | 5.095443e-49 | -8.615850e-47 |
| Msa1091830 | Msa1314340 | 0.807266 | 5.496428e-50 | -8.615850e-47 |
| Msa1091830 | Msa1322190 | 0.826318 | 2.897577e-54 | -8.615850e-47 |
| Msa1091830 | Msa1340650 | 0.832635 | 8.448585e-56 | -8.615850e-47 |
| Msa1091830 | Msa1362880 | 0.800169 | 1.635124e-48 | -8.615850e-47 |
| Msa1091830 | Msa1369530 | 0.823158 | 1.610220e-53 | -8.615850e-47 |
| Msa1091830 | Msa1376890 | 0.808607 | 2.850647e-50 | -8.615850e-47 |
| Msa1091830 | Msa1384330 | 0.803570 | 3.273580e-49 | -8.615850e-47 |
| Msa1091830 | Msa1392260 | 0.806789 | 6.934725e-50 | -8.615850e-47 |
| Msa1091830 | Msa1393040 | 0.830164 | 3.426758e-55 | -8.615850e-47 |
| Msa1091830 | Msa1394730 | 0.805962 | 1.036110e-49 | -8.615850e-47 |
| Msa1091830 | Msa1420140 | 0.814486 | 1.503609e-51 | -8.615850e-47 |
| Msa1091830 | Msa1429900 | 0.801481 | 8.824676e-49 | -8.615850e-47 |
| Msa1091830 | Msa1445030 | 0.809201 | 2.126954e-50 | -8.615850e-47 |
| Msa1091830 | Msa1451620 | -0.839959 | 1.160011e-57 | -8.615850e-47 |
| Msa1091830 | Msa1458550 | 0.820590 | 6.329811e-53 | -8.615850e-47 |
| Msa1091830 | Msa1464940 | 0.806896 | 6.583878e-50 | -8.615850e-47 |
| Msa1091830 | Msa1466730 | 0.805033 | 1.622688e-49 | -8.615850e-47 |
| Msa0269450 | Msa1091830 | 0.823801 | 1.139073e-53 | -8.615850e-47 |
| Msa0282250 | Msa1091830 | 0.833097 | 6.485341e-56 | -8.615850e-47 |
| Msa0285450 | Msa1091830 | 0.808508 | 2.991704e-50 | -8.615850e-47 |
| Msa0288100 | Msa1091830 | 0.840762 | 7.151549e-58 | -8.615850e-47 |
| Msa0302580 | Msa1091830 | -0.811582 | 6.515794e-51 | -8.615850e-47 |
| Msa0340450 | Msa1091830 | 0.801775 | 7.678017e-49 | -8.615850e-47 |
| Msa0344690 | Msa1091830 | -0.804162 | 2.465835e-49 | -8.615850e-47 |
| Msa0344830 | Msa1091830 | 0.807601 | 4.666672e-50 | -8.615850e-47 |
| Msa0351810 | Msa1091830 | 0.827103 | 1.882096e-54 | -8.615850e-47 |
| Msa0354800 | Msa1091830 | -0.812094 | 5.039293e-51 | -8.615850e-47 |
| Msa0484780 | Msa1091830 | 0.814508 | 1.486550e-51 | -8.615850e-47 |
| Msa0512750 | Msa1091830 | 0.806967 | 6.360907e-50 | -8.615850e-47 |
| Msa0512900 | Msa1091830 | 0.803325 | 3.678811e-49 | -8.615850e-47 |
| Msa0516370 | Msa1091830 | 0.801721 | 7.875962e-49 | -8.615850e-47 |
| Msa0536220 | Msa1091830 | 0.815429 | 9.288201e-52 | -8.615850e-47 |
| Msa0538170 | Msa1091830 | 0.809950 | 1.468893e-50 | -8.615850e-47 |
| Msa0554050 | Msa1091830 | 0.811024 | 8.610345e-51 | -8.615850e-47 |
| Msa0555720 | Msa1091830 | 0.804825 | 1.793494e-49 | -8.615850e-47 |
| Msa0558690 | Msa1091830 | 0.836285 | 1.023651e-56 | -8.615850e-47 |
| Msa0562440 | Msa1091830 | 0.802729 | 4.886444e-49 | -8.615850e-47 |
| Msa0569500 | Msa1091830 | 0.804185 | 2.439191e-49 | -8.615850e-47 |
| Msa0570970 | Msa1091830 | 0.804532 | 2.064539e-49 | -8.615850e-47 |
| Msa0574850 | Msa1091830 | 0.808787 | 2.608902e-50 | -8.615850e-47 |
| Msa0575470 | Msa1091830 | 0.813652 | 2.296556e-51 | -8.615850e-47 |
| Msa0590840 | Msa1091830 | 0.819013 | 1.451264e-52 | -8.615850e-47 |
| Msa0598780 | Msa1091830 | 0.802112 | 6.548994e-49 | -8.615850e-47 |
| Msa0599580 | Msa1091830 | 0.815714 | 8.025361e-52 | -8.615850e-47 |
| Msa0847880 | Msa1091830 | 0.803287 | 3.746183e-49 | -8.615850e-47 |
| Msa0860410 | Msa1091830 | 0.808140 | 3.585139e-50 | -8.615850e-47 |
| Msa0869120 | Msa1091830 | 0.807256 | 5.524818e-50 | -8.615850e-47 |
| Msa0870530 | Msa1091830 | 0.800051 | 1.727823e-48 | -8.615850e-47 |
| Msa0876580 | Msa1091830 | 0.821053 | 4.954102e-53 | -8.615850e-47 |
| Msa0910980 | Msa1091830 | -0.818267 | 2.143219e-52 | -8.615850e-47 |
| Msa0930390 | Msa1091830 | 0.815983 | 6.988582e-52 | -8.615850e-47 |
| Msa0933100 | Msa1091830 | 0.807652 | 4.552231e-50 | -8.615850e-47 |
| Msa0936300 | Msa1091830 | 0.814443 | 1.536328e-51 | -8.615850e-47 |
| Msa0958920 | Msa1091830 | 0.820354 | 7.171278e-53 | -8.615850e-47 |
| Msa0961420 | Msa1091830 | -0.846664 | 1.884419e-59 | -8.615850e-47 |
| Msa0973100 | Msa1091830 | 0.802714 | 4.921616e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091830 | MtrunA17_Chr7g0215661 | 84.760 | 479 | 31 | 4 | 1 | 472 | 1 | 444 | 0.0 | 798 |
| Msa1091830 | MtrunA17_Chr8g0357161 | 75.824 | 182 | 27 | 3 | 253 | 419 | 1 | 180 | 3.06e-86 | 262 |
| Msa1091830 | MtrunA17_Chr8g0357141 | 83.206 | 131 | 16 | 1 | 295 | 419 | 1 | 131 | 1.92e-70 | 220 |
| Msa1091830 | MtrunA17_Chr8g0335221 | 39.024 | 369 | 185 | 11 | 9 | 368 | 3 | 340 | 3.40e-60 | 202 |
| Msa1091830 | MtrunA17_Chr4g0045601 | 32.719 | 217 | 135 | 4 | 160 | 370 | 99 | 310 | 1.56e-23 | 102 |
| Msa1091830 | MtrunA17_Chr4g0045591 | 32.402 | 179 | 113 | 4 | 160 | 334 | 85 | 259 | 4.19e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091830 | AT4G37440.1 | 36.866 | 217 | 126 | 5 | 160 | 369 | 128 | 340 | 1.85e-32 | 129 |
| Msa1091830 | AT4G37440.2 | 36.866 | 217 | 126 | 5 | 160 | 369 | 128 | 340 | 2.11e-32 | 129 |
| Msa1091830 | AT4G37440.3 | 36.866 | 217 | 126 | 5 | 160 | 369 | 128 | 340 | 4.26e-32 | 127 |
| Msa1091830 | AT3G59670.1 | 32.117 | 274 | 152 | 11 | 160 | 415 | 131 | 388 | 4.13e-28 | 117 |
| Msa1091830 | AT3G50040.2 | 49.057 | 106 | 53 | 1 | 161 | 265 | 108 | 213 | 7.49e-23 | 100 |
| Msa1091830 | AT3G50040.4 | 49.057 | 106 | 53 | 1 | 161 | 265 | 108 | 213 | 7.49e-23 | 100 |
| Msa1091830 | AT3G50040.1 | 49.057 | 106 | 53 | 1 | 161 | 265 | 108 | 213 | 7.49e-23 | 100 |
| Msa1091830 | AT3G50040.3 | 49.057 | 106 | 53 | 1 | 161 | 265 | 108 | 213 | 8.66e-23 | 100 |
Find 100 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGAGATATATTATTTA+AGG | 0.191090 | 7_3:-7364293 | Msa1091830:three_prime_UTR |
| GTTAATATAATTAGGAATTC+TGG | 0.224356 | 7_3:-7367744 | Msa1091830:CDS |
| TTTCAATTGTAAGTGTTATT+TGG | 0.232632 | 7_3:-7368506 | Msa1091830:five_prime_UTR |
| CATTTAGAGCGCCACATTAT+AGG | 0.242366 | 7_3:+7366247 | None:intergenic |
| CTATAATGTGGCGCTCTAAA+TGG | 0.246676 | 7_3:-7366246 | Msa1091830:CDS |
| ATCTTGTCAAGTTCCAATTC+TGG | 0.272848 | 7_3:+7367912 | None:intergenic |
| TCTTCTTCTTCCTTGTTTCA+AGG | 0.282030 | 7_3:-7368471 | Msa1091830:five_prime_UTR |
| CTGCTCTTCAACTGATTCAT+TGG | 0.289020 | 7_3:+7364621 | None:intergenic |
| GTAATAATGAACTCATTTCT+TGG | 0.289178 | 7_3:+7364370 | None:intergenic |
| TAGGACCCAGTTTGTGGTTC+AGG | 0.293038 | 7_3:-7365254 | Msa1091830:CDS |
| AAGTTTGCAGTAGACGATTT+TGG | 0.304395 | 7_3:-7366130 | Msa1091830:CDS |
| TGTGTAAATTCTGGTTTAGT+TGG | 0.316055 | 7_3:-7364409 | Msa1091830:three_prime_UTR |
| TTTCTCCCTGAACCACAAAC+TGG | 0.321217 | 7_3:+7365248 | None:intergenic |
| AGTTCAAGTTCTAGTTCTTT+TGG | 0.322613 | 7_3:-7367675 | Msa1091830:CDS |
| TAATCATAATGTGTAAATTC+TGG | 0.329718 | 7_3:-7364418 | Msa1091830:three_prime_UTR |
| CTTTGAATTCCCTTGGATCT+AGG | 0.330803 | 7_3:+7366094 | None:intergenic |
| CTTACCCTCCTTGTGTTCCT+AGG | 0.334663 | 7_3:+7364511 | None:intergenic |
| TACAGTTTCTACAAAGCTAT+TGG | 0.341665 | 7_3:-7364219 | Msa1091830:three_prime_UTR |
| AACATAGTTGGGCCATCTAA+TGG | 0.350082 | 7_3:-7365436 | Msa1091830:CDS |
| GTCTTTGATAATCCGGAGTT+TGG | 0.355695 | 7_3:-7367078 | Msa1091830:CDS |
| ATGTGGAAGTTAATATAATT+AGG | 0.371828 | 7_3:-7367752 | Msa1091830:CDS |
| GTTGCAGAACAGAACTTTCC+AGG | 0.381277 | 7_3:+7365466 | None:intergenic |
| TTTAGTCCTTTGAATTCCCT+TGG | 0.386624 | 7_3:+7366087 | None:intergenic |
| AACCACAAACTGGGTCCTAT+TGG | 0.395798 | 7_3:+7365258 | None:intergenic |
| GCTCATGATGGTCCCGTAGA+AGG | 0.405262 | 7_3:-7365876 | Msa1091830:CDS |
| AATTAGGAATTCTGGTTTCA+AGG | 0.415615 | 7_3:-7367736 | Msa1091830:CDS |
| TGGAACCAGAATTCCTTTAC+CGG | 0.417023 | 7_3:+7365378 | None:intergenic |
| TCTTGTCAAGTTCCAATTCT+GGG | 0.433825 | 7_3:+7367913 | None:intergenic |
| AGGAGGGTAAGGAGGAAGTT+TGG | 0.434590 | 7_3:-7364499 | Msa1091830:CDS |
| GAACGATTAAATCCATTAGA+TGG | 0.440535 | 7_3:+7365424 | None:intergenic |
| TGGATCATGCTCTTTCTTGA+AGG | 0.448414 | 7_3:-7364333 | Msa1091830:three_prime_UTR |
| GCAACTCAATCGAACATAGT+TGG | 0.450765 | 7_3:-7365448 | Msa1091830:CDS |
| TATTACATTATGTGAATATG+TGG | 0.451669 | 7_3:-7364353 | Msa1091830:three_prime_UTR |
| AAGGTAATGCTGATAATGTT+GGG | 0.452199 | 7_3:-7365636 | Msa1091830:CDS |
| AGGACCCAGTTTGTGGTTCA+GGG | 0.455579 | 7_3:-7365253 | Msa1091830:CDS |
| GGTAAAGGAATTCTGGTTCC+AGG | 0.463930 | 7_3:-7365376 | Msa1091830:CDS |
| ACTAGTTCTGATTCTGCATT+CGG | 0.464087 | 7_3:-7367642 | Msa1091830:CDS |
| ATCATCATGAAAACCTTCTA+CGG | 0.468644 | 7_3:+7365863 | None:intergenic |
| ATTAGGAATTCTGGTTTCAA+GGG | 0.469002 | 7_3:-7367735 | Msa1091830:CDS |
| TACTGTTTCTTGATGTACTT+GGG | 0.477142 | 7_3:-7364267 | Msa1091830:three_prime_UTR |
| CAACTCAATCGAACATAGTT+GGG | 0.478639 | 7_3:-7365447 | Msa1091830:CDS |
| ATTATTTCTTCAAGAGCTTG+TGG | 0.479414 | 7_3:-7364462 | Msa1091830:intron |
| TGCCAATAGGACCCAGTTTG+TGG | 0.481081 | 7_3:-7365260 | Msa1091830:CDS |
| CTACGGGACCATCATGAGCT+TGG | 0.481763 | 7_3:+7365880 | None:intergenic |
| GAAGAAGAAGAAGGTAACCT+TGG | 0.485369 | 7_3:-7367885 | Msa1091830:CDS |
| GAAAGGGGTCTTTGATAATC+CGG | 0.488295 | 7_3:-7367085 | Msa1091830:CDS |
| CTTCAGTTGAGTCTGCCAAT+AGG | 0.488684 | 7_3:-7365273 | Msa1091830:CDS |
| TTACCCTCCTTGTGTTCCTA+GGG | 0.489585 | 7_3:+7364512 | None:intergenic |
| GTACTGTTTCTTGATGTACT+TGG | 0.496297 | 7_3:-7364268 | Msa1091830:three_prime_UTR |
| GAAGGTAATGCTGATAATGT+TGG | 0.499295 | 7_3:-7365637 | Msa1091830:intron |
| GAATTCTGGTTTCAAGGGTG+TGG | 0.506163 | 7_3:-7367730 | Msa1091830:CDS |
| GTTCCTAGGGAAATGTGTCT+TGG | 0.512760 | 7_3:+7364525 | None:intergenic |
| AGATCAAGTTAAACGATATG+TGG | 0.513455 | 7_3:-7365612 | Msa1091830:CDS |
| CTAGGAACACAAGGAGGGTA+AGG | 0.514099 | 7_3:-7364510 | Msa1091830:CDS |
| TTGATAATCCGGAGTTTGGT+TGG | 0.514702 | 7_3:-7367074 | Msa1091830:CDS |
| AAGTAATGTGGAGAAAGAAC+AGG | 0.518229 | 7_3:-7366066 | Msa1091830:CDS |
| TTGTAGAGATGAGGAGAATG+TGG | 0.520186 | 7_3:-7367769 | Msa1091830:CDS |
| GTCGTGTAGATGTTGTAGAA+AGG | 0.522867 | 7_3:-7367321 | Msa1091830:CDS |
| TTCTCCCTGAACCACAAACT+GGG | 0.525460 | 7_3:+7365249 | None:intergenic |
| AAGATAGTAGAAGAAGAAGA+AGG | 0.527027 | 7_3:-7367894 | Msa1091830:CDS |
| TAATCCGGAGTTTGGTTGGA+AGG | 0.531217 | 7_3:-7367070 | Msa1091830:intron |
| AATGAATTATCAACTCGAGA+AGG | 0.542925 | 7_3:-7365304 | Msa1091830:CDS |
| AAAAGTTAACTGATCATTGG+AGG | 0.545239 | 7_3:-7366282 | Msa1091830:CDS |
| AAGTTGAGAATTTGAAAACT+CGG | 0.545310 | 7_3:-7365513 | Msa1091830:CDS |
| TTCTGCATTCGGTGATTCTG+AGG | 0.550235 | 7_3:-7367631 | Msa1091830:CDS |
| TCAGATTTAGCGAAACTACC+TGG | 0.561539 | 7_3:+7365358 | None:intergenic |
| ACCGTGAAATATGAAAATCC+TGG | 0.561681 | 7_3:-7365484 | Msa1091830:CDS |
| CATACCTTCCAACCAAACTC+CGG | 0.565281 | 7_3:+7367066 | None:intergenic |
| TGTGTCTTGGTTGTTGAACA+TGG | 0.565981 | 7_3:+7364538 | None:intergenic |
| TGCATTCGGTGATTCTGAGG+AGG | 0.569756 | 7_3:-7367628 | Msa1091830:CDS |
| GTCGTTGTCTTGTAGAGATG+AGG | 0.574630 | 7_3:-7367778 | Msa1091830:CDS |
| CAAGTCAGTACCTAGATCCA+AGG | 0.575872 | 7_3:-7366104 | Msa1091830:CDS |
| CACATTTCCCTAGGAACACA+AGG | 0.576001 | 7_3:-7364519 | Msa1091830:CDS |
| ATGAATTATCAACTCGAGAA+GGG | 0.578328 | 7_3:-7365303 | Msa1091830:CDS |
| TTCAAAGGACTAAAGTAATG+TGG | 0.579531 | 7_3:-7366078 | Msa1091830:CDS |
| TCATCATGAAAACCTTCTAC+GGG | 0.586519 | 7_3:+7365864 | None:intergenic |
| GAAACATACCTCAATAGAAG+TGG | 0.588810 | 7_3:+7367570 | None:intergenic |
| AGGTAATGCTGATAATGTTG+GGG | 0.590800 | 7_3:-7365635 | Msa1091830:CDS |
| GGAGAAAGCCACTTCTATTG+AGG | 0.591650 | 7_3:-7367578 | Msa1091830:intron |
| GATCAAGTTAAACGATATGT+GGG | 0.594999 | 7_3:-7365611 | Msa1091830:CDS |
| GGAACACAAGGAGGGTAAGG+AGG | 0.597368 | 7_3:-7364507 | Msa1091830:CDS |
| CAACCAAGACACATTTCCCT+AGG | 0.604185 | 7_3:-7364528 | Msa1091830:CDS |
| GAAATACGTAAAAGAGATTG+CGG | 0.605017 | 7_3:-7366185 | Msa1091830:CDS |
| CGCAGCGGAGGCATAAAGTG+TGG | 0.607157 | 7_3:-7367599 | Msa1091830:CDS |
| AGTTAACTGATCATTGGAGG+AGG | 0.614517 | 7_3:-7366279 | Msa1091830:CDS |
| GGTACATCTTTCCTATAATG+TGG | 0.617709 | 7_3:-7366258 | Msa1091830:CDS |
| AGGAGGTTGAATCGCAGCGG+AGG | 0.622642 | 7_3:-7367611 | Msa1091830:CDS |
| CCGATTGAAGCATGAATCCG+AGG | 0.624046 | 7_3:-7367366 | Msa1091830:intron |
| AAGTCAGTACCTAGATCCAA+GGG | 0.625774 | 7_3:-7366103 | Msa1091830:CDS |
| CTATTGGCAGACTCAACTGA+AGG | 0.634161 | 7_3:+7365274 | None:intergenic |
| TCAACACGCTCAAACAACCT+CGG | 0.640405 | 7_3:+7367349 | None:intergenic |
| CTAGATCCAAGGGAATTCAA+AGG | 0.641109 | 7_3:-7366093 | Msa1091830:CDS |
| ATTTCCCTAGGAACACAAGG+AGG | 0.641761 | 7_3:-7364516 | Msa1091830:CDS |
| TACCATAAAACCTTGAAACA+AGG | 0.646502 | 7_3:+7368461 | None:intergenic |
| TTTCCCTAGGAACACAAGGA+GGG | 0.664488 | 7_3:-7364515 | Msa1091830:CDS |
| AGAACCGAAAGAACAAAATG+CGG | 0.672236 | 7_3:-7367814 | Msa1091830:CDS |
| CTGAGGAGGTTGAATCGCAG+CGG | 0.687151 | 7_3:-7367614 | Msa1091830:CDS |
| GATTGTGTTGTGAGTGACAG+CGG | 0.709093 | 7_3:+7368542 | None:intergenic |
| TCATCTCTACAAGACAACGA+CGG | 0.716546 | 7_3:+7367780 | None:intergenic |
| GGGTGTGGAAGATAATTGTG+TGG | 0.726932 | 7_3:-7367715 | Msa1091830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTACTTTTTAAATA+TGG | - | chr7_3:7365355-7365374 | Msa1091830:CDS | 10.0% |
| !! | ATATATAAAATATAAAAAGG+AGG | + | chr7_3:7366180-7366199 | None:intergenic | 10.0% |
| !! | ATGAAAAAACATTATATTAT+GGG | + | chr7_3:7366931-7366950 | None:intergenic | 10.0% |
| !! | AATGAAAAAACATTATATTA+TGG | + | chr7_3:7366932-7366951 | None:intergenic | 10.0% |
| !!! | ATGCTTTTATTTTTATTAAT+TGG | - | chr7_3:7368439-7368458 | Msa1091830:intron | 10.0% |
| !!! | TCATAATCATTTTATTTGTT+TGG | - | chr7_3:7364367-7364386 | Msa1091830:three_prime_UTR | 15.0% |
| !! | AATAAAAAGAACAGTTTATT+TGG | + | chr7_3:7366017-7366036 | None:intergenic | 15.0% |
| !! | AATTGGAGATATATTATTTA+AGG | - | chr7_3:7368456-7368475 | Msa1091830:intron | 15.0% |
| !!! | TTTCAATTGTAAGTGTTATT+TGG | - | chr7_3:7364243-7364262 | Msa1091830:three_prime_UTR | 20.0% |
| !!! | TTGATGTTTATTCATGATTT+TGG | - | chr7_3:7364543-7364562 | Msa1091830:CDS | 20.0% |
| !! | ATGTGGAAGTTAATATAATT+AGG | - | chr7_3:7364997-7365016 | Msa1091830:intron | 20.0% |
| !! | GTTAATATAATTAGGAATTC+TGG | - | chr7_3:7365005-7365024 | Msa1091830:intron | 20.0% |
| !!! | TTTCTCAATGTTTTAGTTAT+TGG | - | chr7_3:7365198-7365217 | Msa1091830:intron | 20.0% |
| !! | ATTGAAAAACCTAACAAAAA+AGG | - | chr7_3:7365834-7365853 | Msa1091830:intron | 20.0% |
| !! | AAAAACATTATATTATGGGA+TGG | + | chr7_3:7366927-7366946 | None:intergenic | 20.0% |
| !!! | ATTATGAACATTTTTCAAAC+TGG | - | chr7_3:7367050-7367069 | Msa1091830:intron | 20.0% |
| !! | AGAAATGATTATAAAAGTTG+TGG | + | chr7_3:7367676-7367695 | None:intergenic | 20.0% |
| !! | AAGAAATAATCAAACTCTTA+AGG | + | chr7_3:7368277-7368296 | None:intergenic | 20.0% |
| !! | TAATCATAATGTGTAAATTC+TGG | - | chr7_3:7368331-7368350 | Msa1091830:intron | 20.0% |
| !! | TATTACATTATGTGAATATG+TGG | - | chr7_3:7368396-7368415 | Msa1091830:intron | 20.0% |
| !!! | TAGCATGTGATTTTTTCATA+TGG | - | chr7_3:7364600-7364619 | Msa1091830:CDS | 25.0% |
| !!! | AGCATGTGATTTTTTCATAT+GGG | - | chr7_3:7364601-7364620 | Msa1091830:CDS | 25.0% |
| ! | CATAGCTAAAACTTCATAAT+CGG | + | chr7_3:7364784-7364803 | None:intergenic | 25.0% |
| !! | CATTATTATCTTCTTTTCCA+AGG | + | chr7_3:7364884-7364903 | None:intergenic | 25.0% |
| !!! | AGTTACTCTTTAGTTTTTCT+AGG | + | chr7_3:7365503-7365522 | None:intergenic | 25.0% |
| !! | TAATGAGTTGGATCAAAATA+TGG | - | chr7_3:7365543-7365562 | Msa1091830:CDS | 25.0% |
| ! | TGGTTTATGATAGAACATTA+CGG | - | chr7_3:7365563-7365582 | Msa1091830:CDS | 25.0% |
| ! | AGCAAAACACATCATAAAAA+AGG | + | chr7_3:7366083-7366102 | None:intergenic | 25.0% |
| !!! | TGTAATTCATAACTTGTTGT+GGG | - | chr7_3:7366123-7366142 | Msa1091830:CDS | 25.0% |
| !! | ATTTTCAAATTACCTTGTGT+TGG | - | chr7_3:7366337-7366356 | Msa1091830:intron | 25.0% |
| !!! | GCTGCTATGTATTTTTTATA+AGG | - | chr7_3:7366359-7366378 | Msa1091830:intron | 25.0% |
| ! | AGAAAAAGTTAACTGATCAT+TGG | - | chr7_3:7366464-7366483 | Msa1091830:intron | 25.0% |
| ! | TACTATGGTATGAAATTACT+TGG | - | chr7_3:7366763-7366782 | Msa1091830:intron | 25.0% |
| !! | TTTAAAGTGTGAATCAAACA+AGG | - | chr7_3:7366973-7366992 | Msa1091830:intron | 25.0% |
| ! | TTTGTTTCATTGATATGAGA+AGG | - | chr7_3:7367094-7367113 | Msa1091830:intron | 25.0% |
| ! | AAGTTGAGAATTTGAAAACT+CGG | - | chr7_3:7367236-7367255 | Msa1091830:intron | 25.0% |
| !! | ATTTTGAACAACTTTCTTCA+AGG | + | chr7_3:7367636-7367655 | None:intergenic | 25.0% |
| !!! | AAGAGTATTTTACTATACAC+GGG | + | chr7_3:7367757-7367776 | None:intergenic | 25.0% |
| !!! | CAAGAGTATTTTACTATACA+CGG | + | chr7_3:7367758-7367777 | None:intergenic | 25.0% |
| !! | TATTTTACTCTACACATGAA+AGG | + | chr7_3:7367782-7367801 | None:intergenic | 25.0% |
| !!! | GTACCTTTACTTTTAATGTT+TGG | - | chr7_3:7367957-7367976 | Msa1091830:intron | 25.0% |
| ! | ACTCCAAACATTAAAAGTAA+AGG | + | chr7_3:7367963-7367982 | None:intergenic | 25.0% |
| ! | TTCTTGTAATGTTATGATTC+AGG | - | chr7_3:7368093-7368112 | Msa1091830:intron | 25.0% |
| ! | GTAATAATGAACTCATTTCT+TGG | + | chr7_3:7368382-7368401 | None:intergenic | 25.0% |
| !! | TTCCTTGTTTCAAGGTTTTA+TGG | - | chr7_3:7364286-7364305 | Msa1091830:three_prime_UTR | 30.0% |
| TACCATAAAACCTTGAAACA+AGG | + | chr7_3:7364291-7364310 | None:intergenic | 30.0% | |
| ! | TTTTATGCGATTTCTTCACA+TGG | - | chr7_3:7364431-7364450 | Msa1091830:three_prime_UTR | 30.0% |
| TTTATGCGATTTCTTCACAT+GGG | - | chr7_3:7364432-7364451 | Msa1091830:three_prime_UTR | 30.0% | |
| !!! | CGATTATGAAGTTTTAGCTA+TGG | - | chr7_3:7364782-7364801 | Msa1091830:intron | 30.0% |
| CAGATAATGAGTGAAAAAAC+TGG | - | chr7_3:7364813-7364832 | Msa1091830:intron | 30.0% | |
| AAGATAGTAGAAGAAGAAGA+AGG | - | chr7_3:7364855-7364874 | Msa1091830:intron | 30.0% | |
| ! | TTAACCGCATTTTGTTCTTT+CGG | + | chr7_3:7364942-7364961 | None:intergenic | 30.0% |
| !! | AATTAGGAATTCTGGTTTCA+AGG | - | chr7_3:7365013-7365032 | Msa1091830:intron | 30.0% |
| !! | ATTAGGAATTCTGGTTTCAA+GGG | - | chr7_3:7365014-7365033 | Msa1091830:intron | 30.0% |
| !!! | AGTTCAAGTTCTAGTTCTTT+TGG | - | chr7_3:7365074-7365093 | Msa1091830:intron | 30.0% |
| AGATCTAGAGATTAATGAGT+TGG | - | chr7_3:7365531-7365550 | Msa1091830:CDS | 30.0% | |
| !!! | TTCAACCTTTTTTGACCTAT+AGG | - | chr7_3:7365794-7365813 | Msa1091830:intron | 30.0% |
| TTCTTCCTATAGGTCAAAAA+AGG | + | chr7_3:7365802-7365821 | None:intergenic | 30.0% | |
| !! | GTTTTATTGCTTCTTCCTAT+AGG | + | chr7_3:7365812-7365831 | None:intergenic | 30.0% |
| !!! | GTGTTAGTTCCTTTTTTGTT+AGG | + | chr7_3:7365846-7365865 | None:intergenic | 30.0% |
| TTATTTCACACCAACATGTA+CGG | - | chr7_3:7366032-7366051 | Msa1091830:CDS | 30.0% | |
| !! | CTGTAATTCATAACTTGTTG+TGG | - | chr7_3:7366122-7366141 | Msa1091830:CDS | 30.0% |
| AATACGTTTAAACACTGACA+CGG | + | chr7_3:7366426-7366445 | None:intergenic | 30.0% | |
| AAAAGTTAACTGATCATTGG+AGG | - | chr7_3:7366467-7366486 | Msa1091830:intron | 30.0% | |
| GAAATACGTAAAAGAGATTG+CGG | - | chr7_3:7366564-7366583 | Msa1091830:intron | 30.0% | |
| TTCAAAGGACTAAAGTAATG+TGG | - | chr7_3:7366671-7366690 | Msa1091830:intron | 30.0% | |
| CATAGTACGAGAAAAAACAA+TGG | + | chr7_3:7366750-7366769 | None:intergenic | 30.0% | |
| !!! | CATTGTTTTTTCTCGTACTA+TGG | - | chr7_3:7366748-7366767 | Msa1091830:intron | 30.0% |
| AATAAAAACCAAGCTCATGA+TGG | - | chr7_3:7366861-7366880 | Msa1091830:intron | 30.0% | |
| ATCATCATGAAAACCTTCTA+CGG | + | chr7_3:7366889-7366908 | None:intergenic | 30.0% | |
| ! | AAGGTAATGCTGATAATGTT+GGG | - | chr7_3:7367113-7367132 | Msa1091830:intron | 30.0% |
| AGATCAAGTTAAACGATATG+TGG | - | chr7_3:7367137-7367156 | Msa1091830:intron | 30.0% | |
| GATCAAGTTAAACGATATGT+GGG | - | chr7_3:7367138-7367157 | Msa1091830:intron | 30.0% | |
| ! | ATTTTCAATCATGTCAACGA+AGG | + | chr7_3:7367197-7367216 | None:intergenic | 30.0% |
| ! | TCCAGGATTTTCATATTTCA+CGG | + | chr7_3:7367269-7367288 | None:intergenic | 30.0% |
| GAACGATTAAATCCATTAGA+TGG | + | chr7_3:7367328-7367347 | None:intergenic | 30.0% | |
| AATGAATTATCAACTCGAGA+AGG | - | chr7_3:7367445-7367464 | Msa1091830:intron | 30.0% | |
| ATGAATTATCAACTCGAGAA+GGG | - | chr7_3:7367446-7367465 | Msa1091830:intron | 30.0% | |
| TTATCCCAAATAAATGTCCT+TGG | - | chr7_3:7367698-7367717 | Msa1091830:CDS | 30.0% | |
| AACAAAGAATACAGATACCA+TGG | + | chr7_3:7367824-7367843 | None:intergenic | 30.0% | |
| TTGTCAAATAAAGGCTATAG+CGG | + | chr7_3:7367929-7367948 | None:intergenic | 30.0% | |
| !! | ATTAAAAGTAAAGGTACCAG+TGG | + | chr7_3:7367954-7367973 | None:intergenic | 30.0% |
| ! | GTTTTTCATTCTACGACAAA+TGG | + | chr7_3:7368010-7368029 | None:intergenic | 30.0% |
| !! | TAATGTTATGATTCAGGTTG+AGG | - | chr7_3:7368099-7368118 | Msa1091830:intron | 30.0% |
| ! | ATTATTTCTTCAAGAGCTTG+TGG | - | chr7_3:7368287-7368306 | Msa1091830:intron | 30.0% |
| !! | TGTGTAAATTCTGGTTTAGT+TGG | - | chr7_3:7368340-7368359 | Msa1091830:intron | 30.0% |
| ! | TACTGTTTCTTGATGTACTT+GGG | - | chr7_3:7368482-7368501 | Msa1091830:five_prime_UTR | 30.0% |
| TACAGTTTCTACAAAGCTAT+TGG | - | chr7_3:7368530-7368549 | Msa1091830:five_prime_UTR | 30.0% | |
| AGGAAGAAGAAGAAGAACAT+GGG | + | chr7_3:7364271-7364290 | None:intergenic | 35.0% | |
| AAGGAAGAAGAAGAAGAACA+TGG | + | chr7_3:7364272-7364291 | None:intergenic | 35.0% | |
| ! | TCTTCTTCTTCCTTGTTTCA+AGG | - | chr7_3:7364278-7364297 | Msa1091830:three_prime_UTR | 35.0% |
| TCTTGTCAAGTTCCAATTCT+GGG | + | chr7_3:7364839-7364858 | None:intergenic | 35.0% | |
| ATCTTGTCAAGTTCCAATTC+TGG | + | chr7_3:7364840-7364859 | None:intergenic | 35.0% | |
| AGAACCGAAAGAACAAAATG+CGG | - | chr7_3:7364935-7364954 | Msa1091830:intron | 35.0% | |
| !! | ACTAGTTCTGATTCTGCATT+CGG | - | chr7_3:7365107-7365126 | Msa1091830:intron | 35.0% |
| GAAACATACCTCAATAGAAG+TGG | + | chr7_3:7365182-7365201 | None:intergenic | 35.0% | |
| TTTAGTTATTGGACCGAACT+AGG | - | chr7_3:7365209-7365228 | Msa1091830:intron | 35.0% | |
| GATTGAACTAGGTTTAACCA+TGG | - | chr7_3:7365297-7365316 | Msa1091830:CDS | 35.0% | |
| AAAACAAGATGAACCAACCA+TGG | + | chr7_3:7365317-7365336 | None:intergenic | 35.0% | |
| TGTAGAAAGGAGAGTAAGAT+CGG | - | chr7_3:7365441-7365460 | Msa1091830:CDS | 35.0% | |
| GAGGATAGTTAAATTGCTAG+AGG | - | chr7_3:7365467-7365486 | Msa1091830:CDS | 35.0% | |
| !! | TCTTAACTCCCTGGTTTTTA+GGG | - | chr7_3:7365642-7365661 | Msa1091830:intron | 35.0% |
| ! | GTTGGAAGGTATGTAAAGTA+TGG | - | chr7_3:7365693-7365712 | Msa1091830:intron | 35.0% |
| AAGGAACTAACACATACAGA+AGG | - | chr7_3:7365853-7365872 | Msa1091830:intron | 35.0% | |
| CATACAGAAGGAATATGCTT+TGG | - | chr7_3:7365865-7365884 | Msa1091830:CDS | 35.0% | |
| ! | AGAAGGAATATGCTTTGGAT+TGG | - | chr7_3:7365870-7365889 | Msa1091830:CDS | 35.0% |
| GCATGAATGTCCTTAGATTT+AGG | - | chr7_3:7365924-7365943 | Msa1091830:intron | 35.0% | |
| AAGTATCTGAACGTGTTGTA+CGG | + | chr7_3:7365983-7366002 | None:intergenic | 35.0% | |
| CACGTTCAGATACTTCATTT+AGG | - | chr7_3:7365988-7366007 | Msa1091830:intron | 35.0% | |
| TATTTCACACCAACATGTAC+GGG | - | chr7_3:7366033-7366052 | Msa1091830:CDS | 35.0% | |
| TGTGTCAGTGTTCTACATTT+CGG | - | chr7_3:7366231-7366250 | Msa1091830:CDS | 35.0% | |
| GGTACATCTTTCCTATAATG+TGG | - | chr7_3:7366491-7366510 | Msa1091830:intron | 35.0% | |
| ! | AAGTTTGCAGTAGACGATTT+TGG | - | chr7_3:7366619-7366638 | Msa1091830:intron | 35.0% |
| TTTAGTCCTTTGAATTCCCT+TGG | + | chr7_3:7366665-7366684 | None:intergenic | 35.0% | |
| AAGTAATGTGGAGAAAGAAC+AGG | - | chr7_3:7366683-7366702 | Msa1091830:intron | 35.0% | |
| ACTATCAACGCAAAATACAC+TGG | + | chr7_3:7366811-7366830 | None:intergenic | 35.0% | |
| !! | TGAGCTTGGTTTTTATTCTC+TGG | + | chr7_3:7366858-7366877 | None:intergenic | 35.0% |
| TCATCATGAAAACCTTCTAC+GGG | + | chr7_3:7366888-7366907 | None:intergenic | 35.0% | |
| ! | GAAGGTAATGCTGATAATGT+TGG | - | chr7_3:7367112-7367131 | Msa1091830:intron | 35.0% |
| ! | AGGTAATGCTGATAATGTTG+GGG | - | chr7_3:7367114-7367133 | Msa1091830:intron | 35.0% |
| ACCGTGAAATATGAAAATCC+TGG | - | chr7_3:7367265-7367284 | Msa1091830:intron | 35.0% | |
| CAACTCAATCGAACATAGTT+GGG | - | chr7_3:7367302-7367321 | Msa1091830:intron | 35.0% | |
| ! | CATAATTCTGCTTCTTTTGC+CGG | - | chr7_3:7367352-7367371 | Msa1091830:CDS | 35.0% |
| TGTCAAATAAAGGCTATAGC+GGG | + | chr7_3:7367928-7367947 | None:intergenic | 35.0% | |
| CCAGTGGTATTGTCAAATAA+AGG | + | chr7_3:7367938-7367957 | None:intergenic | 35.0% | |
| ! | CCTTTATTTGACAATACCAC+TGG | - | chr7_3:7367935-7367954 | Msa1091830:CDS | 35.0% |
| ATCCTATTACGCAGAGTAAT+TGG | + | chr7_3:7368038-7368057 | None:intergenic | 35.0% | |
| ! | GTACTGTTTCTTGATGTACT+TGG | - | chr7_3:7368481-7368500 | Msa1091830:five_prime_UTR | 35.0% |
| TGAAAAAACTGGCCCAGAAT+TGG | - | chr7_3:7364824-7364843 | Msa1091830:intron | 40.0% | |
| GAAGAAGAAGAAGGTAACCT+TGG | - | chr7_3:7364864-7364883 | Msa1091830:intron | 40.0% | |
| TCATCTCTACAAGACAACGA+CGG | + | chr7_3:7364972-7364991 | None:intergenic | 40.0% | |
| TTGTAGAGATGAGGAGAATG+TGG | - | chr7_3:7364980-7364999 | Msa1091830:intron | 40.0% | |
| !! | TTTGTTGGTTGGTTTGAGCT+CGG | - | chr7_3:7365249-7365268 | Msa1091830:CDS | 40.0% |
| TACCTTACTCTAGTTGAACC+AGG | - | chr7_3:7365275-7365294 | Msa1091830:CDS | 40.0% | |
| ATCCTGGTTCAACTAGAGTA+AGG | + | chr7_3:7365280-7365299 | None:intergenic | 40.0% | |
| AGTTGAACCAGGATTGAACT+AGG | - | chr7_3:7365286-7365305 | Msa1091830:CDS | 40.0% | |
| GGTTAAACCTAGTTCAATCC+TGG | + | chr7_3:7365296-7365315 | None:intergenic | 40.0% | |
| GAACTAGGTTTAACCATGGT+TGG | - | chr7_3:7365301-7365320 | Msa1091830:CDS | 40.0% | |
| GTCGTGTAGATGTTGTAGAA+AGG | - | chr7_3:7365428-7365447 | Msa1091830:CDS | 40.0% | |
| AGTTAAATTGCTAGAGGCAG+AGG | - | chr7_3:7365473-7365492 | Msa1091830:CDS | 40.0% | |
| ATGTATTCGACCCCACTATA+GGG | - | chr7_3:7365599-7365618 | Msa1091830:CDS | 40.0% | |
| AACAACCAAACCCTATAGTG+GGG | + | chr7_3:7365612-7365631 | None:intergenic | 40.0% | |
| CAACAACCAAACCCTATAGT+GGG | + | chr7_3:7365613-7365632 | None:intergenic | 40.0% | |
| ACAACAACCAAACCCTATAG+TGG | + | chr7_3:7365614-7365633 | None:intergenic | 40.0% | |
| !!! | GGGTTTGGTTGTTGTTTTTG+TGG | - | chr7_3:7365619-7365638 | Msa1091830:CDS | 40.0% |
| !! | TTTTTGTGGTCTTAACTCCC+TGG | - | chr7_3:7365633-7365652 | Msa1091830:CDS | 40.0% |
| !! | GTCTTAACTCCCTGGTTTTT+AGG | - | chr7_3:7365641-7365660 | Msa1091830:intron | 40.0% |
| ! | GAAAGGGGTCTTTGATAATC+CGG | - | chr7_3:7365664-7365683 | Msa1091830:intron | 40.0% |
| ! | GTCTTTGATAATCCGGAGTT+TGG | - | chr7_3:7365671-7365690 | Msa1091830:intron | 40.0% |
| ! | TTGATAATCCGGAGTTTGGT+TGG | - | chr7_3:7365675-7365694 | Msa1091830:intron | 40.0% |
| ATCCTGGCTGAAACAATCTT+TGG | + | chr7_3:7365719-7365738 | None:intergenic | 40.0% | |
| TTTCAGCCAGGATTCAAACT+CGG | - | chr7_3:7365726-7365745 | Msa1091830:intron | 40.0% | |
| ACAGGACACACCTAAATCTA+AGG | + | chr7_3:7365937-7365956 | None:intergenic | 40.0% | |
| AGTATCTGAACGTGTTGTAC+GGG | + | chr7_3:7365982-7366001 | None:intergenic | 40.0% | |
| TTCTACATTTCGGACACTAG+TGG | - | chr7_3:7366241-7366260 | Msa1091830:CDS | 40.0% | |
| AATACATAGCAGCCAACACA+AGG | + | chr7_3:7366352-7366371 | None:intergenic | 40.0% | |
| AGTTAACTGATCATTGGAGG+AGG | - | chr7_3:7366470-7366489 | Msa1091830:intron | 40.0% | |
| ! | CATTTAGAGCGCCACATTAT+AGG | + | chr7_3:7366505-7366524 | None:intergenic | 40.0% |
| ! | CTATAATGTGGCGCTCTAAA+TGG | - | chr7_3:7366503-7366522 | Msa1091830:intron | 40.0% |
| AAGTCAGTACCTAGATCCAA+GGG | - | chr7_3:7366646-7366665 | Msa1091830:intron | 40.0% | |
| CTTTGAATTCCCTTGGATCT+AGG | + | chr7_3:7366658-7366677 | None:intergenic | 40.0% | |
| CTAGATCCAAGGGAATTCAA+AGG | - | chr7_3:7366656-7366675 | Msa1091830:intron | 40.0% | |
| !! | AGGTTTTCATGATGATGTCG+TGG | - | chr7_3:7366893-7366912 | Msa1091830:intron | 40.0% |
| !! | GGTTTTCATGATGATGTCGT+GGG | - | chr7_3:7366894-7366913 | Msa1091830:intron | 40.0% |
| GCAACTCAATCGAACATAGT+TGG | - | chr7_3:7367301-7367320 | Msa1091830:intron | 40.0% | |
| AACATAGTTGGGCCATCTAA+TGG | - | chr7_3:7367313-7367332 | Msa1091830:intron | 40.0% | |
| ! | TTTTGCCGGTAAAGGAATTC+TGG | - | chr7_3:7367366-7367385 | Msa1091830:intron | 40.0% |
| TGGAACCAGAATTCCTTTAC+CGG | + | chr7_3:7367374-7367393 | None:intergenic | 40.0% | |
| TCAGATTTAGCGAAACTACC+TGG | + | chr7_3:7367394-7367413 | None:intergenic | 40.0% | |
| TCCCAAATAAATGTCCTTGG+TGG | - | chr7_3:7367701-7367720 | Msa1091830:CDS | 40.0% | |
| GCCACCAAGGACATTTATTT+GGG | + | chr7_3:7367705-7367724 | None:intergenic | 40.0% | |
| AGCCACCAAGGACATTTATT+TGG | + | chr7_3:7367706-7367725 | None:intergenic | 40.0% | |
| ! | AATAAATGTCCTTGGTGGCT+TGG | - | chr7_3:7367706-7367725 | Msa1091830:CDS | 40.0% |
| AATACTCACCTGTCATAACC+CGG | - | chr7_3:7367798-7367817 | Msa1091830:CDS | 40.0% | |
| AAGAATACAGATACCATGGC+CGG | + | chr7_3:7367820-7367839 | None:intergenic | 40.0% | |
| ! | CTACAATTTTCTGTGATCCG+CGG | + | chr7_3:7367869-7367888 | None:intergenic | 40.0% |
| GTCAAATAAAGGCTATAGCG+GGG | + | chr7_3:7367927-7367946 | None:intergenic | 40.0% | |
| GTCCAATTACTCTGCGTAAT+AGG | - | chr7_3:7368033-7368052 | Msa1091830:intron | 40.0% | |
| ! | CTGCTCTTCAACTGATTCAT+TGG | + | chr7_3:7368131-7368150 | None:intergenic | 40.0% |
| TGTGTCTTGGTTGTTGAACA+TGG | + | chr7_3:7368214-7368233 | None:intergenic | 40.0% | |
| TGGATCATGCTCTTTCTTGA+AGG | - | chr7_3:7368416-7368435 | Msa1091830:intron | 40.0% | |
| GATTGTGTTGTGAGTGACAG+CGG | + | chr7_3:7364210-7364229 | None:intergenic | 45.0% | |
| GTCGTTGTCTTGTAGAGATG+AGG | - | chr7_3:7364971-7364990 | Msa1091830:intron | 45.0% | |
| !! | GAATTCTGGTTTCAAGGGTG+TGG | - | chr7_3:7365019-7365038 | Msa1091830:intron | 45.0% |
| GGGTGTGGAAGATAATTGTG+TGG | - | chr7_3:7365034-7365053 | Msa1091830:intron | 45.0% | |
| ! | TTCTGCATTCGGTGATTCTG+AGG | - | chr7_3:7365118-7365137 | Msa1091830:intron | 45.0% |
| GGAGAAAGCCACTTCTATTG+AGG | - | chr7_3:7365171-7365190 | Msa1091830:intron | 45.0% | |
| ATTGGACCGAACTAGGAAGT+AGG | - | chr7_3:7365216-7365235 | Msa1091830:intron | 45.0% | |
| CCAGTTCCTACTTCCTAGTT+CGG | + | chr7_3:7365225-7365244 | None:intergenic | 45.0% | |
| CGAACTAGGAAGTAGGAACT+GGG | - | chr7_3:7365223-7365242 | Msa1091830:intron | 45.0% | |
| GTAGGAACTGGGAAGTTTGT+TGG | - | chr7_3:7365234-7365253 | Msa1091830:intron | 45.0% | |
| !! | GAACTGGGAAGTTTGTTGGT+TGG | - | chr7_3:7365238-7365257 | Msa1091830:intron | 45.0% |
| CCTCGGATTCATGCTTCAAT+CGG | + | chr7_3:7365386-7365405 | None:intergenic | 45.0% | |
| TCAACACGCTCAAACAACCT+CGG | + | chr7_3:7365403-7365422 | None:intergenic | 45.0% | |
| GAAAGGAGAGTAAGATCGGA+TGG | - | chr7_3:7365445-7365464 | Msa1091830:CDS | 45.0% | |
| TAAATTGCTAGAGGCAGAGG+TGG | - | chr7_3:7365476-7365495 | Msa1091830:CDS | 45.0% | |
| GATGTATTCGACCCCACTAT+AGG | - | chr7_3:7365598-7365617 | Msa1091830:CDS | 45.0% | |
| !! | ACTCCCTGGTTTTTAGGGAA+AGG | - | chr7_3:7365647-7365666 | Msa1091830:intron | 45.0% |
| !! | CTCCCTGGTTTTTAGGGAAA+GGG | - | chr7_3:7365648-7365667 | Msa1091830:intron | 45.0% |
| !! | TCCCTGGTTTTTAGGGAAAG+GGG | - | chr7_3:7365649-7365668 | Msa1091830:intron | 45.0% |
| ACCCCTTTCCCTAAAAACCA+GGG | + | chr7_3:7365653-7365672 | None:intergenic | 45.0% | |
| TAATCCGGAGTTTGGTTGGA+AGG | - | chr7_3:7365679-7365698 | Msa1091830:intron | 45.0% | |
| CATACCTTCCAACCAAACTC+CGG | + | chr7_3:7365686-7365705 | None:intergenic | 45.0% | |
| TTCAGCCAGGATTCAAACTC+GGG | - | chr7_3:7365727-7365746 | Msa1091830:intron | 45.0% | |
| GAAAACCCGAGTTTGAATCC+TGG | + | chr7_3:7365735-7365754 | None:intergenic | 45.0% | |
| GAACAATGTCCCGTACATGT+TGG | + | chr7_3:7366045-7366064 | None:intergenic | 45.0% | |
| GGACATTGTTCTGCTGGAAA+AGG | - | chr7_3:7366054-7366073 | Msa1091830:CDS | 45.0% | |
| TCATGAGAACCTATGCAGCA+CGG | + | chr7_3:7366282-7366301 | None:intergenic | 45.0% | |
| CAAGTCAGTACCTAGATCCA+AGG | - | chr7_3:7366645-7366664 | Msa1091830:intron | 45.0% | |
| ! | ATGATGATGTCGTGGGTAAG+TGG | - | chr7_3:7366901-7366920 | Msa1091830:intron | 45.0% |
| GTTGCAGAACAGAACTTTCC+AGG | + | chr7_3:7367286-7367305 | None:intergenic | 45.0% | |
| ! | TCTGCTTCTTTTGCCGGTAA+AGG | - | chr7_3:7367358-7367377 | Msa1091830:CDS | 45.0% |
| !! | GGTAAAGGAATTCTGGTTCC+AGG | - | chr7_3:7367373-7367392 | Msa1091830:intron | 45.0% |
| CTATTGGCAGACTCAACTGA+AGG | + | chr7_3:7367478-7367497 | None:intergenic | 45.0% | |
| CTTCAGTTGAGTCTGCCAAT+AGG | - | chr7_3:7367476-7367495 | Msa1091830:intron | 45.0% | |
| AACCACAAACTGGGTCCTAT+TGG | + | chr7_3:7367494-7367513 | None:intergenic | 45.0% | |
| TTCTCCCTGAACCACAAACT+GGG | + | chr7_3:7367503-7367522 | None:intergenic | 45.0% | |
| TTTCTCCCTGAACCACAAAC+TGG | + | chr7_3:7367504-7367523 | None:intergenic | 45.0% | |
| CAAAACCAAACGCATGATGC+AGG | + | chr7_3:7367589-7367608 | None:intergenic | 45.0% | |
| AATCATTCACCAAGCCACCA+AGG | + | chr7_3:7367718-7367737 | None:intergenic | 45.0% | |
| AGAATACAGATACCATGGCC+GGG | + | chr7_3:7367819-7367838 | None:intergenic | 45.0% | |
| !! | CTTTTAAGTGTTGCCAACCG+CGG | - | chr7_3:7367849-7367868 | Msa1091830:CDS | 45.0% |
| ! | AATTTTCTGTGATCCGCGGT+TGG | + | chr7_3:7367865-7367884 | None:intergenic | 45.0% |
| GGGCTATAACATTGTGGTGT+AGG | + | chr7_3:7367907-7367926 | None:intergenic | 45.0% | |
| ! | ATAGCGGGGCTATAACATTG+TGG | + | chr7_3:7367913-7367932 | None:intergenic | 45.0% |
| CAACCAAGACACATTTCCCT+AGG | - | chr7_3:7368221-7368240 | Msa1091830:intron | 45.0% | |
| GTTCCTAGGGAAATGTGTCT+TGG | + | chr7_3:7368227-7368246 | None:intergenic | 45.0% | |
| CACATTTCCCTAGGAACACA+AGG | - | chr7_3:7368230-7368249 | Msa1091830:intron | 45.0% | |
| ATTTCCCTAGGAACACAAGG+AGG | - | chr7_3:7368233-7368252 | Msa1091830:intron | 45.0% | |
| TTTCCCTAGGAACACAAGGA+GGG | - | chr7_3:7368234-7368253 | Msa1091830:intron | 45.0% | |
| TTACCCTCCTTGTGTTCCTA+GGG | + | chr7_3:7368240-7368259 | None:intergenic | 45.0% | |
| !! | ATCATATATAAAATATAAAA+AGG | + | chr7_3:7366183-7366202 | None:intergenic | 5.0% |
| ! | TGCATTCGGTGATTCTGAGG+AGG | - | chr7_3:7365121-7365140 | Msa1091830:intron | 50.0% |
| CCGAACTAGGAAGTAGGAAC+TGG | - | chr7_3:7365222-7365241 | Msa1091830:intron | 50.0% | |
| CCGATTGAAGCATGAATCCG+AGG | - | chr7_3:7365383-7365402 | Msa1091830:CDS | 50.0% | |
| AGGAGAGTAAGATCGGATGG+AGG | - | chr7_3:7365448-7365467 | Msa1091830:CDS | 50.0% | |
| TTCGACCCCACTATAGGGTT+TGG | - | chr7_3:7365604-7365623 | Msa1091830:CDS | 50.0% | |
| GACCCCTTTCCCTAAAAACC+AGG | + | chr7_3:7365654-7365673 | None:intergenic | 50.0% | |
| GGCCAAAGATTGTTTCAGCC+AGG | - | chr7_3:7365714-7365733 | Msa1091830:intron | 50.0% | |
| TGTACGGGACATTGTTCTGC+TGG | - | chr7_3:7366048-7366067 | Msa1091830:CDS | 50.0% | |
| TTTGTCTGTCCGTGCTGCAT+AGG | - | chr7_3:7366270-7366289 | Msa1091830:CDS | 50.0% | |
| TGCCAATAGGACCCAGTTTG+TGG | - | chr7_3:7367489-7367508 | Msa1091830:intron | 50.0% | |
| TAGGACCCAGTTTGTGGTTC+AGG | - | chr7_3:7367495-7367514 | Msa1091830:intron | 50.0% | |
| AGGACCCAGTTTGTGGTTCA+GGG | - | chr7_3:7367496-7367515 | Msa1091830:intron | 50.0% | |
| CAAACGCATGATGCAGGCAA+TGG | + | chr7_3:7367583-7367602 | None:intergenic | 50.0% | |
| CATTGCCTGCATCATGCGTT+TGG | - | chr7_3:7367581-7367600 | Msa1091830:CDS | 50.0% | |
| CTTACCCTCCTTGTGTTCCT+AGG | + | chr7_3:7368241-7368260 | None:intergenic | 50.0% | |
| CTAGGAACACAAGGAGGGTA+AGG | - | chr7_3:7368239-7368258 | Msa1091830:intron | 50.0% | |
| AGGAGGGTAAGGAGGAAGTT+TGG | - | chr7_3:7368250-7368269 | Msa1091830:intron | 50.0% | |
| CTGAGGAGGTTGAATCGCAG+CGG | - | chr7_3:7365135-7365154 | Msa1091830:intron | 55.0% | |
| TGTGTCCTGTGCACATGCGT+CGG | - | chr7_3:7365947-7365966 | Msa1091830:intron | 55.0% | |
| CTACGGGACCATCATGAGCT+TGG | + | chr7_3:7366872-7366891 | None:intergenic | 55.0% | |
| GCTCATGATGGTCCCGTAGA+AGG | - | chr7_3:7366873-7366892 | Msa1091830:intron | 55.0% | |
| TACCATGGCCGGGTTATGAC+AGG | + | chr7_3:7367809-7367828 | None:intergenic | 55.0% | |
| GGAACACAAGGAGGGTAAGG+AGG | - | chr7_3:7368242-7368261 | Msa1091830:intron | 55.0% | |
| AGGAGGTTGAATCGCAGCGG+AGG | - | chr7_3:7365138-7365157 | Msa1091830:intron | 60.0% | |
| ! | CGCAGCGGAGGCATAAAGTG+TGG | - | chr7_3:7365150-7365169 | Msa1091830:intron | 60.0% |
| CACCTGTCATAACCCGGCCA+TGG | - | chr7_3:7367804-7367823 | Msa1091830:CDS | 60.0% | |
| AGCGTCCGACGCATGTGCAC+AGG | + | chr7_3:7365955-7365974 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 7364186 | 7368585 | 7364186 | ID=Msa1091830;Name=Msa1091830 |
| chr7_3 | mRNA | 7364186 | 7368585 | 7364186 | ID=Msa1091830-mRNA-1;Parent=Msa1091830;Name=Msa1091830-mRNA-1;_AED=0.09;_eAED=0.09;_QI=119|0.62|0.77|0.77|0.75|0.77|9|286|472 |
| chr7_3 | exon | 7364186 | 7364471 | 7364186 | ID=Msa1091830-mRNA-1:exon:2310;Parent=Msa1091830-mRNA-1 |
| chr7_3 | exon | 7364492 | 7364656 | 7364492 | ID=Msa1091830-mRNA-1:exon:2309;Parent=Msa1091830-mRNA-1 |
| chr7_3 | exon | 7365246 | 7365655 | 7365246 | ID=Msa1091830-mRNA-1:exon:2308;Parent=Msa1091830-mRNA-1 |
| chr7_3 | exon | 7365856 | 7365912 | 7365856 | ID=Msa1091830-mRNA-1:exon:2307;Parent=Msa1091830-mRNA-1 |
| chr7_3 | exon | 7366002 | 7366309 | 7366002 | ID=Msa1091830-mRNA-1:exon:2306;Parent=Msa1091830-mRNA-1 |
| chr7_3 | exon | 7367071 | 7367108 | 7367071 | ID=Msa1091830-mRNA-1:exon:2305;Parent=Msa1091830-mRNA-1 |
| chr7_3 | exon | 7367318 | 7367378 | 7367318 | ID=Msa1091830-mRNA-1:exon:2304;Parent=Msa1091830-mRNA-1 |
| chr7_3 | exon | 7367579 | 7367955 | 7367579 | ID=Msa1091830-mRNA-1:exon:2303;Parent=Msa1091830-mRNA-1 |
| chr7_3 | exon | 7368464 | 7368585 | 7368464 | ID=Msa1091830-mRNA-1:exon:2302;Parent=Msa1091830-mRNA-1 |
| chr7_3 | five_prime_UTR | 7368467 | 7368585 | 7368467 | ID=Msa1091830-mRNA-1:five_prime_utr;Parent=Msa1091830-mRNA-1 |
| chr7_3 | CDS | 7368464 | 7368466 | 7368464 | ID=Msa1091830-mRNA-1:cds;Parent=Msa1091830-mRNA-1 |
| chr7_3 | CDS | 7367579 | 7367955 | 7367579 | ID=Msa1091830-mRNA-1:cds;Parent=Msa1091830-mRNA-1 |
| chr7_3 | CDS | 7367318 | 7367378 | 7367318 | ID=Msa1091830-mRNA-1:cds;Parent=Msa1091830-mRNA-1 |
| chr7_3 | CDS | 7367071 | 7367108 | 7367071 | ID=Msa1091830-mRNA-1:cds;Parent=Msa1091830-mRNA-1 |
| chr7_3 | CDS | 7366002 | 7366309 | 7366002 | ID=Msa1091830-mRNA-1:cds;Parent=Msa1091830-mRNA-1 |
| chr7_3 | CDS | 7365856 | 7365912 | 7365856 | ID=Msa1091830-mRNA-1:cds;Parent=Msa1091830-mRNA-1 |
| chr7_3 | CDS | 7365246 | 7365655 | 7365246 | ID=Msa1091830-mRNA-1:cds;Parent=Msa1091830-mRNA-1 |
| chr7_3 | CDS | 7364492 | 7364656 | 7364492 | ID=Msa1091830-mRNA-1:cds;Parent=Msa1091830-mRNA-1 |
| chr7_3 | three_prime_UTR | 7364186 | 7364471 | 7364186 | ID=Msa1091830-mRNA-1:three_prime_utr;Parent=Msa1091830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
