AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651190 MtrunA17_Chr4g0043591 94.863 292 13 1 1 292 1 290 0.0 548
Msa0651190 MtrunA17_Chr1g0189751 30.319 188 110 2 124 292 80 265 4.56e-27 107
Msa0651190 MtrunA17_Chr1g0189671 30.457 197 107 6 124 293 80 273 6.11e-27 106
Msa0651190 MtrunA17_Chr1g0189721 28.365 208 125 4 104 292 63 265 3.61e-26 103
Msa0651190 MtrunA17_Chr1g0189591 25.623 281 155 5 64 292 28 306 2.00e-24 100
Msa0651190 MtrunA17_Chr1g0189821 28.877 187 114 2 124 293 83 267 2.39e-23 96.7
Msa0651190 MtrunA17_Chr7g0272101 29.237 236 146 6 72 292 28 257 3.78e-23 95.9
Msa0651190 MtrunA17_Chr1g0189611 30.159 189 106 7 124 292 83 265 1.65e-21 91.3
Msa0651190 MtrunA17_Chr1g0189621 25.000 256 164 6 57 292 17 264 4.05e-21 90.5
Msa0651190 MtrunA17_Chr4g0010881 28.571 203 132 4 93 292 45 237 4.18e-21 89.7
Msa0651190 MtrunA17_Chr7g0272091 29.572 257 138 10 74 292 32 283 1.56e-20 89.0
Msa0651190 MtrunA17_Chr1g0189571 28.365 208 100 6 130 292 2 205 1.44e-19 84.7
Msa0651190 MtrunA17_Chr1g0189541 28.718 195 110 8 116 292 1 184 1.82e-18 81.3
Msa0651190 MtrunA17_Chr1g0190071 26.577 222 125 6 104 293 67 282 1.97e-18 83.2
Msa0651190 MtrunA17_Chr1g0192371 26.923 260 144 8 71 292 30 281 5.89e-18 82.0
Msa0651190 MtrunA17_Chr1g0203331 25.641 234 141 4 73 275 13 244 6.12e-18 81.3
Msa0651190 MtrunA17_Chr1g0189781 24.082 245 158 5 73 292 32 273 3.89e-17 79.3
Msa0651190 MtrunA17_Chr1g0203281 25.301 249 153 7 73 292 28 272 8.28e-17 78.6
Msa0651190 MtrunA17_Chr1g0189641 26.531 196 115 3 124 292 80 273 8.73e-17 78.6
Msa0651190 MtrunA17_Chr7g0260801 28.191 188 111 5 124 293 94 275 6.80e-14 70.5
Msa0651190 MtrunA17_Chr7g0265551 25.726 241 143 9 82 293 124 357 2.90e-13 69.3
Msa0651190 MtrunA17_Chr1g0157451 27.835 194 102 8 135 293 94 284 2.54e-12 66.2
Msa0651190 MtrunA17_Chr8g0350401 26.222 225 138 8 87 289 60 278 3.02e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651190 AT4G19840.1 52.451 204 90 5 94 293 46 246 6.00e-70 217
Msa0651190 AT4G19850.3 47.143 210 96 7 94 292 13 218 7.75e-57 182
Msa0651190 AT4G19850.1 49.383 162 77 3 136 292 15 176 2.25e-50 164
Msa0651190 AT4G19850.2 46.774 186 84 7 94 268 13 194 1.01e-45 154
Msa0651190 AT1G33920.1 44.079 152 81 3 145 292 13 164 1.65e-42 144
Msa0651190 AT1G65390.1 40.361 166 93 4 132 292 246 410 1.60e-37 137
Msa0651190 AT2G02240.1 28.472 288 173 8 28 291 38 316 6.26e-27 107
Msa0651190 AT5G45090.1 34.568 162 100 4 136 291 169 330 3.49e-25 103
Msa0651190 AT5G45090.2 32.948 173 110 4 125 291 136 308 4.27e-25 102
Msa0651190 AT2G02360.1 31.707 246 139 9 66 291 32 268 6.18e-24 98.6
Msa0651190 AT2G02250.1 27.719 285 172 12 31 291 29 303 1.26e-22 95.9
Msa0651190 AT5G45080.1 33.333 153 96 3 145 291 238 390 7.16e-22 94.7
Msa0651190 AT1G80110.1 31.527 203 120 4 106 291 55 255 9.40e-22 92.4
Msa0651190 AT2G26820.1 31.818 154 98 3 145 291 308 461 1.19e-20 92.0
Msa0651190 AT2G26820.3 31.818 154 98 3 145 291 324 477 1.24e-20 92.0
Msa0651190 AT2G02340.1 26.296 270 150 10 53 291 50 301 2.16e-19 86.7
Msa0651190 AT5G45070.1 33.133 166 103 6 135 293 190 354 1.40e-18 85.1
Msa0651190 AT2G02230.1 32.484 157 90 4 54 209 47 188 1.92e-17 81.6
Msa0651190 AT5G24560.1 24.380 242 117 8 53 293 17 193 5.60e-16 75.1
Msa0651190 AT1G09155.1 24.904 261 155 7 71 292 22 280 6.53e-15 73.9
Msa0651190 AT2G02320.1 26.877 253 154 10 62 291 54 298 6.55e-15 73.9
Msa0651190 AT2G02310.1 26.877 253 155 7 64 293 60 305 4.46e-13 68.9
Msa0651190 AT1G56250.1 25.941 239 136 7 93 292 45 281 1.83e-12 66.6
Msa0651190 AT3G53000.1 27.119 236 141 9 82 291 54 284 2.67e-12 66.6

Find 77 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATTTATTTATTATAAA+TGG 0.169759 4_3:-58554484 None:intergenic
TGTATCCATTTCCAATAATT+TGG 0.178400 4_3:-58553650 None:intergenic
TGATCGTAATTCTTCCTTAT+TGG 0.201571 4_3:-58553078 None:intergenic
AACGTTGTTTGTAGAAATAT+TGG 0.239769 4_3:+58553555 Msa0651190:intron
AGAATAATAATAATAGAAAA+TGG 0.302031 4_3:-58554673 None:intergenic
GGGCAGAAGATCCAAATTAT+TGG 0.313201 4_3:+58553639 Msa0651190:CDS
GCAACACAAGGAAAATTTAA+TGG 0.313866 4_3:+58554260 Msa0651190:CDS
AATGTTCGACTTGTCCTTCC+AGG 0.347328 4_3:+58554225 Msa0651190:CDS
AAGATCCAAATTATTGGAAA+TGG 0.355234 4_3:+58553645 Msa0651190:CDS
ACAAAATGAACCAACCAATA+AGG 0.364806 4_3:+58553064 Msa0651190:CDS
TCCCTTGAAGATTTATCAAC+CGG 0.377577 4_3:-58553284 None:intergenic
GTGTGTTGGTTAGAAGTTCA+TGG 0.382382 4_3:+58554105 Msa0651190:CDS
GAAACTTGATATAAAATTCC+TGG 0.384782 4_3:-58554153 None:intergenic
TTACACAAACAGACTCTTCA+TGG 0.398448 4_3:-58554530 None:intergenic
TGTTGCTGCTTCTTTCCTCC+TGG 0.398539 4_3:-58554243 None:intergenic
GGTTGCTGATTGAGTCTCAT+TGG 0.400764 4_3:-58553195 None:intergenic
AGCTCAGGGTTGGGAACTTC+CGG 0.410700 4_3:+58554200 Msa0651190:CDS
CAACATGAAACAGTTGGCTT+TGG 0.410721 4_3:-58553591 None:intergenic
ATATAGCATATGAAGTGAAA+TGG 0.426540 4_3:+58552947 Msa0651190:exon
TAGTTCTTTGATCAAAGGTT+TGG 0.427713 4_3:-58553216 None:intergenic
GAGTTTATGAAATTTATAAG+AGG 0.443386 4_3:-58554604 None:intergenic
CGTAATTCTTCCTTATTGGT+TGG 0.455287 4_3:-58553074 None:intergenic
TCATACAATATATAATATGT+TGG 0.455808 4_3:-58554645 None:intergenic
GATGCTACAAACTCACCAAC+TGG 0.464067 4_3:-58554312 None:intergenic
ACGTTGTTTGTAGAAATATT+GGG 0.469595 4_3:+58553556 Msa0651190:intron
GTTTGTTGTGGCTGTGATTG+TGG 0.475397 4_3:-58552999 None:intergenic
AAAAGATCCAGCTCAGGGTT+GGG 0.476440 4_3:+58554191 Msa0651190:CDS
TATAGCATATGAAGTGAAAT+GGG 0.476453 4_3:+58552948 Msa0651190:exon
TGCATACAACATGAAACAGT+TGG 0.479048 4_3:-58553597 None:intergenic
GCTGCTTCTTTCCTCCTGGA+AGG 0.481544 4_3:-58554239 None:intergenic
AAACTTAGTTCTTTGATCAA+AGG 0.483857 4_3:-58553221 None:intergenic
CACCGGTTGATAAATCTTCA+AGG 0.484431 4_3:+58553282 Msa0651190:CDS
AATGTTAAAAGATCCAGCTC+AGG 0.485668 4_3:+58554185 Msa0651190:CDS
TGTTGGTGTTGGTGTTGTTG+TGG 0.488043 4_3:-58553044 None:intergenic
CAAAAGCACTCTCAATCACC+TGG 0.496488 4_3:+58553618 Msa0651190:CDS
GGAAGTTCCCAACCCTGAGC+TGG 0.506652 4_3:-58554198 None:intergenic
TAACTATGAGTACATATTGA+AGG 0.507376 4_3:+58553250 Msa0651190:CDS
GTTAAGAGCACGGTGGATAG+AGG 0.513931 4_3:+58554287 Msa0651190:CDS
TTGTACTGCCTTCTTGCTGG+AGG 0.519711 4_3:-58553153 None:intergenic
CATACAATATATAATATGTT+GGG 0.525022 4_3:-58554644 None:intergenic
GTTCTTACATCATAAGACTA+AGG 0.532133 4_3:+58553337 Msa0651190:CDS
TGTACTGCCTTCTTGCTGGA+GGG 0.535237 4_3:-58553152 None:intergenic
ATTACGATCACCTTCGAGAA+GGG 0.539166 4_3:+58553091 Msa0651190:CDS
TAAAAGATCCAGCTCAGGGT+TGG 0.544106 4_3:+58554190 Msa0651190:CDS
GAATGTTGATGTGTTTGTTG+TGG 0.547811 4_3:-58553011 None:intergenic
ATATCAATGTTTGAATATGA+AGG 0.554106 4_3:+58554360 Msa0651190:CDS
AATATGTACTCATAGTTATG+TGG 0.557085 4_3:-58553245 None:intergenic
ACCGGTTGATAAATCTTCAA+GGG 0.558433 4_3:+58553283 Msa0651190:CDS
AGGACAAGTCGAACATTCAC+CGG 0.560100 4_3:-58554219 None:intergenic
TAGCTCTGCTGTGTCAAACA+TGG 0.565237 4_3:-58554577 None:intergenic
TTGAATATGAAGGTGGTATG+TGG 0.566199 4_3:+58554370 Msa0651190:CDS
TTGTGTAATTCATAATATGA+AGG 0.566700 4_3:+58554545 Msa0651190:three_prime_UTR
ATTGAAGGATGCAGATTCAC+CGG 0.568231 4_3:+58553265 Msa0651190:CDS
ATGTGTGATCAGCTATATGC+TGG 0.569259 4_3:+58553311 Msa0651190:CDS
ATAATTTGGATCTTCTGCCC+AGG 0.570223 4_3:-58553636 None:intergenic
AGGAAAGAAGCAGCAACACA+AGG 0.570643 4_3:+58554248 Msa0651190:CDS
TGTTGTGGCTGTGATTGTGG+TGG 0.571307 4_3:-58552996 None:intergenic
AAAATTACCCTCCAGCAAGA+AGG 0.582340 4_3:+58553145 Msa0651190:CDS
AATTACGATCACCTTCGAGA+AGG 0.585667 4_3:+58553090 Msa0651190:CDS
AAACAAGGGCTTGTCATCAA+AGG 0.587551 4_3:+58554393 Msa0651190:CDS
GAAGGTGGTATGTGGAAACA+AGG 0.592943 4_3:+58554378 Msa0651190:CDS
GACACAAGGAAGCTTTCACC+AGG 0.601273 4_3:+58554135 Msa0651190:CDS
AGGCATTGCTATCAAACCAA+AGG 0.606104 4_3:+58554413 Msa0651190:CDS
TAATGGAAAAGTTAAGAGCA+CGG 0.611140 4_3:+58554277 Msa0651190:CDS
ATGTTAAAAGATCCAGCTCA+GGG 0.613664 4_3:+58554186 Msa0651190:CDS
CAATATATAATATGTTGGGA+CGG 0.618266 4_3:-58554640 None:intergenic
TCAATGTTTGAATATGAAGG+TGG 0.618732 4_3:+58554363 Msa0651190:CDS
TTCATGGAAAATTCGACACA+AGG 0.625618 4_3:+58554121 Msa0651190:CDS
AAGGTGGTATGTGGAAACAA+GGG 0.657478 4_3:+58554379 Msa0651190:CDS
CAGTGAGGGGATGACTGAGG+TGG 0.662615 4_3:+58554068 Msa0651190:intron
CTGAACTGAAGAGAGTGTGT+TGG 0.663119 4_3:+58554091 Msa0651190:CDS
TTGCAGTGAGGGGATGACTG+AGG 0.666138 4_3:+58554065 Msa0651190:intron
CGGTGGATAGAGGTTCCAGT+TGG 0.671489 4_3:+58554297 Msa0651190:CDS
AAAAGCACTCTCAATCACCT+GGG 0.675178 4_3:+58553619 Msa0651190:CDS
TAATTCATAATATGAAGGTG+TGG 0.683915 4_3:+58554550 Msa0651190:three_prime_UTR
GTTCGACTTGTCCTTCCAGG+AGG 0.692090 4_3:+58554228 Msa0651190:CDS
TGGAAAAGTTAAGAGCACGG+TGG 0.775430 4_3:+58554280 Msa0651190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTATTTATTATAAA+TGG - chr4_3:58554487-58554506 None:intergenic 0.0%
!! AGAATAATAATAATAGAAAA+TGG - chr4_3:58554676-58554695 None:intergenic 10.0%
!! AATAACTAATTTCAATTTCA+AGG - chr4_3:58553472-58553491 None:intergenic 15.0%
!! GATTAAATTGTTGATATAAT+AGG - chr4_3:58553718-58553737 None:intergenic 15.0%
!!! TTTTTCTAAGTTATATGTAA+AGG - chr4_3:58553823-58553842 None:intergenic 15.0%
!! CATACAATATATAATATGTT+GGG - chr4_3:58554647-58554666 None:intergenic 15.0%
!! TCATACAATATATAATATGT+TGG - chr4_3:58554648-58554667 None:intergenic 15.0%
!! TAGGAAAAGATAATGATATA+AGG - chr4_3:58553699-58553718 None:intergenic 20.0%
!! TGAAATTATTTGTAATCACT+GGG - chr4_3:58553740-58553759 None:intergenic 20.0%
!! TTGAAATTATTTGTAATCAC+TGG - chr4_3:58553741-58553760 None:intergenic 20.0%
!! ATATCAATGTTTGAATATGA+AGG + chr4_3:58554360-58554379 Msa0651190:CDS 20.0%
!! TTGTGTAATTCATAATATGA+AGG + chr4_3:58554545-58554564 Msa0651190:three_prime_UTR 20.0%
!! GAGTTTATGAAATTTATAAG+AGG - chr4_3:58554607-58554626 None:intergenic 20.0%
! ATATAGCATATGAAGTGAAA+TGG + chr4_3:58552947-58552966 Msa0651190:exon 25.0%
! TATAGCATATGAAGTGAAAT+GGG + chr4_3:58552948-58552967 Msa0651190:exon 25.0%
!! AAACTTAGTTCTTTGATCAA+AGG - chr4_3:58553224-58553243 None:intergenic 25.0%
! AATATGTACTCATAGTTATG+TGG - chr4_3:58553248-58553267 None:intergenic 25.0%
! TAACTATGAGTACATATTGA+AGG + chr4_3:58553250-58553269 Msa0651190:CDS 25.0%
! AACGTTGTTTGTAGAAATAT+TGG + chr4_3:58553555-58553574 Msa0651190:intron 25.0%
! ACGTTGTTTGTAGAAATATT+GGG + chr4_3:58553556-58553575 Msa0651190:intron 25.0%
! AAGATCCAAATTATTGGAAA+TGG + chr4_3:58553645-58553664 Msa0651190:CDS 25.0%
! TGTATCCATTTCCAATAATT+TGG - chr4_3:58553653-58553672 None:intergenic 25.0%
! TGTAATTCATAGATGTTTCT+TGG - chr4_3:58553940-58553959 None:intergenic 25.0%
! ATTACAAGCTAATTCTATCT+AGG + chr4_3:58553954-58553973 Msa0651190:intron 25.0%
! AAACATAGCTTGATCTAATT+AGG - chr4_3:58554046-58554065 None:intergenic 25.0%
! GAAACTTGATATAAAATTCC+TGG - chr4_3:58554156-58554175 None:intergenic 25.0%
!!! CTATCTATTTTTCATTCCTT+TGG - chr4_3:58554432-58554451 None:intergenic 25.0%
! TAATTCATAATATGAAGGTG+TGG + chr4_3:58554550-58554569 Msa0651190:three_prime_UTR 25.0%
! CAATATATAATATGTTGGGA+CGG - chr4_3:58554643-58554662 None:intergenic 25.0%
!! TATTGGTTGGTTCATTTTGT+TGG - chr4_3:58553064-58553083 None:intergenic 30.0%
ACAAAATGAACCAACCAATA+AGG + chr4_3:58553064-58553083 Msa0651190:CDS 30.0%
TGATCGTAATTCTTCCTTAT+TGG - chr4_3:58553081-58553100 None:intergenic 30.0%
!! GGTAATTTTGTTTGATGTTG+AGG - chr4_3:58553134-58553153 None:intergenic 30.0%
TAGTTCTTTGATCAAAGGTT+TGG - chr4_3:58553219-58553238 None:intergenic 30.0%
GTTCTTACATCATAAGACTA+AGG + chr4_3:58553337-58553356 Msa0651190:CDS 30.0%
ATCTCAGGACAATTGTAAAA+TGG - chr4_3:58553435-58553454 None:intergenic 30.0%
GACGAAATTTAAATCATCTC+AGG - chr4_3:58553450-58553469 None:intergenic 30.0%
TTTAGGGACTAAATTGAAGA+TGG - chr4_3:58553884-58553903 None:intergenic 30.0%
GCAACACAAGGAAAATTTAA+TGG + chr4_3:58554260-58554279 Msa0651190:CDS 30.0%
TAATGGAAAAGTTAAGAGCA+CGG + chr4_3:58554277-58554296 Msa0651190:CDS 30.0%
TTTGTAGCATCTGAAAAAGA+TGG + chr4_3:58554324-58554343 Msa0651190:CDS 30.0%
TCAATGTTTGAATATGAAGG+TGG + chr4_3:58554363-58554382 Msa0651190:CDS 30.0%
! GAATGTTGATGTGTTTGTTG+TGG - chr4_3:58553014-58553033 None:intergenic 35.0%
! TTGGTTCATTTTGTTGGTGT+TGG - chr4_3:58553058-58553077 None:intergenic 35.0%
CGTAATTCTTCCTTATTGGT+TGG - chr4_3:58553077-58553096 None:intergenic 35.0%
!! ACCGGTTGATAAATCTTCAA+GGG + chr4_3:58553283-58553302 Msa0651190:CDS 35.0%
TCCCTTGAAGATTTATCAAC+CGG - chr4_3:58553287-58553306 None:intergenic 35.0%
TGCATACAACATGAAACAGT+TGG - chr4_3:58553600-58553619 None:intergenic 35.0%
GGATACAGCAAAAAGATGTT+AGG + chr4_3:58553666-58553685 Msa0651190:CDS 35.0%
!! TTCTATCTAGGACTTTTGTC+TGG + chr4_3:58553966-58553985 Msa0651190:intron 35.0%
TTCATGGAAAATTCGACACA+AGG + chr4_3:58554121-58554140 Msa0651190:CDS 35.0%
AATGTTAAAAGATCCAGCTC+AGG + chr4_3:58554185-58554204 Msa0651190:CDS 35.0%
ATGTTAAAAGATCCAGCTCA+GGG + chr4_3:58554186-58554205 Msa0651190:CDS 35.0%
TTGAATATGAAGGTGGTATG+TGG + chr4_3:58554370-58554389 Msa0651190:CDS 35.0%
TTACACAAACAGACTCTTCA+TGG - chr4_3:58554533-58554552 None:intergenic 35.0%
AATTACGATCACCTTCGAGA+AGG + chr4_3:58553090-58553109 Msa0651190:CDS 40.0%
ATTACGATCACCTTCGAGAA+GGG + chr4_3:58553091-58553110 Msa0651190:CDS 40.0%
! AACAGATTTTCCCTTCTCGA+AGG - chr4_3:58553104-58553123 None:intergenic 40.0%
AAAATTACCCTCCAGCAAGA+AGG + chr4_3:58553145-58553164 Msa0651190:CDS 40.0%
ATTGAAGGATGCAGATTCAC+CGG + chr4_3:58553265-58553284 Msa0651190:CDS 40.0%
!! CACCGGTTGATAAATCTTCA+AGG + chr4_3:58553282-58553301 Msa0651190:CDS 40.0%
ATGTGTGATCAGCTATATGC+TGG + chr4_3:58553311-58553330 Msa0651190:CDS 40.0%
! CAACATGAAACAGTTGGCTT+TGG - chr4_3:58553594-58553613 None:intergenic 40.0%
!! AAAAGCACTCTCAATCACCT+GGG + chr4_3:58553619-58553638 Msa0651190:CDS 40.0%
ATAATTTGGATCTTCTGCCC+AGG - chr4_3:58553639-58553658 None:intergenic 40.0%
GGGCAGAAGATCCAAATTAT+TGG + chr4_3:58553639-58553658 Msa0651190:CDS 40.0%
! TCAAGCTATGTTTTGCAGTG+AGG + chr4_3:58554053-58554072 Msa0651190:intron 40.0%
! CAAGCTATGTTTTGCAGTGA+GGG + chr4_3:58554054-58554073 Msa0651190:intron 40.0%
! AAGCTATGTTTTGCAGTGAG+GGG + chr4_3:58554055-58554074 Msa0651190:intron 40.0%
!! GTGTGTTGGTTAGAAGTTCA+TGG + chr4_3:58554105-58554124 Msa0651190:CDS 40.0%
GTAGCATCTGAAAAAGATGG+CGG + chr4_3:58554327-58554346 Msa0651190:CDS 40.0%
AAGGTGGTATGTGGAAACAA+GGG + chr4_3:58554379-58554398 Msa0651190:CDS 40.0%
AAACAAGGGCTTGTCATCAA+AGG + chr4_3:58554393-58554412 Msa0651190:CDS 40.0%
! AGGCATTGCTATCAAACCAA+AGG + chr4_3:58554413-58554432 Msa0651190:CDS 40.0%
!! GTTTGTTGTGGCTGTGATTG+TGG - chr4_3:58553002-58553021 None:intergenic 45.0%
!! TGTTGGTGTTGGTGTTGTTG+TGG - chr4_3:58553047-58553066 None:intergenic 45.0%
! GTTTTGTACTGCCTTCTTGC+TGG - chr4_3:58553159-58553178 None:intergenic 45.0%
! GGTTGCTGATTGAGTCTCAT+TGG - chr4_3:58553198-58553217 None:intergenic 45.0%
!! CAAAAGCACTCTCAATCACC+TGG + chr4_3:58553618-58553637 Msa0651190:CDS 45.0%
! CTGAACTGAAGAGAGTGTGT+TGG + chr4_3:58554091-58554110 Msa0651190:CDS 45.0%
TAAAAGATCCAGCTCAGGGT+TGG + chr4_3:58554190-58554209 Msa0651190:CDS 45.0%
AAAAGATCCAGCTCAGGGTT+GGG + chr4_3:58554191-58554210 Msa0651190:CDS 45.0%
AGGACAAGTCGAACATTCAC+CGG - chr4_3:58554222-58554241 None:intergenic 45.0%
! AATGTTCGACTTGTCCTTCC+AGG + chr4_3:58554225-58554244 Msa0651190:CDS 45.0%
AGGAAAGAAGCAGCAACACA+AGG + chr4_3:58554248-58554267 Msa0651190:CDS 45.0%
! TGGAAAAGTTAAGAGCACGG+TGG + chr4_3:58554280-58554299 Msa0651190:CDS 45.0%
GATGCTACAAACTCACCAAC+TGG - chr4_3:58554315-58554334 None:intergenic 45.0%
! TGAAAAAGATGGCGGTGAGA+TGG + chr4_3:58554335-58554354 Msa0651190:CDS 45.0%
GAAGGTGGTATGTGGAAACA+AGG + chr4_3:58554378-58554397 Msa0651190:CDS 45.0%
! TAGCTCTGCTGTGTCAAACA+TGG - chr4_3:58554580-58554599 None:intergenic 45.0%
!! TAAAAAATTTATATAGTTTA+GGG - chr4_3:58553900-58553919 None:intergenic 5.0%
!! TTAAAAAATTTATATAGTTT+AGG - chr4_3:58553901-58553920 None:intergenic 5.0%
TGTTGTGGCTGTGATTGTGG+TGG - chr4_3:58552999-58553018 None:intergenic 50.0%
TGTACTGCCTTCTTGCTGGA+GGG - chr4_3:58553155-58553174 None:intergenic 50.0%
TTGTACTGCCTTCTTGCTGG+AGG - chr4_3:58553156-58553175 None:intergenic 50.0%
GACACAAGGAAGCTTTCACC+AGG + chr4_3:58554135-58554154 Msa0651190:CDS 50.0%
! TGTTGCTGCTTCTTTCCTCC+TGG - chr4_3:58554246-58554265 None:intergenic 50.0%
! GTTAAGAGCACGGTGGATAG+AGG + chr4_3:58554287-58554306 Msa0651190:CDS 50.0%
TTGCAGTGAGGGGATGACTG+AGG + chr4_3:58554065-58554084 Msa0651190:intron 55.0%
AGCTCAGGGTTGGGAACTTC+CGG + chr4_3:58554200-58554219 Msa0651190:CDS 55.0%
! GTTCGACTTGTCCTTCCAGG+AGG + chr4_3:58554228-58554247 Msa0651190:CDS 55.0%
GCTGCTTCTTTCCTCCTGGA+AGG - chr4_3:58554242-58554261 None:intergenic 55.0%
CGGTGGATAGAGGTTCCAGT+TGG + chr4_3:58554297-58554316 Msa0651190:CDS 55.0%
CAGTGAGGGGATGACTGAGG+TGG + chr4_3:58554068-58554087 Msa0651190:intron 60.0%
GGAAGTTCCCAACCCTGAGC+TGG - chr4_3:58554201-58554220 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58552919 58554696 58552919 ID=Msa0651190;Name=Msa0651190
chr4_3 mRNA 58552919 58554696 58552919 ID=Msa0651190-mRNA-1;Parent=Msa0651190;Name=Msa0651190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=47|1|1|1|1|1|3|256|293
chr4_3 exon 58552919 58553358 58552919 ID=Msa0651190-mRNA-1:exon:15485;Parent=Msa0651190-mRNA-1
chr4_3 exon 58553569 58553687 58553569 ID=Msa0651190-mRNA-1:exon:15486;Parent=Msa0651190-mRNA-1
chr4_3 exon 58554071 58554696 58554071 ID=Msa0651190-mRNA-1:exon:15487;Parent=Msa0651190-mRNA-1
chr4_3 five_prime_UTR 58552919 58552965 58552919 ID=Msa0651190-mRNA-1:five_prime_utr;Parent=Msa0651190-mRNA-1
chr4_3 CDS 58552966 58553358 58552966 ID=Msa0651190-mRNA-1:cds;Parent=Msa0651190-mRNA-1
chr4_3 CDS 58553569 58553687 58553569 ID=Msa0651190-mRNA-1:cds;Parent=Msa0651190-mRNA-1
chr4_3 CDS 58554071 58554440 58554071 ID=Msa0651190-mRNA-1:cds;Parent=Msa0651190-mRNA-1
chr4_3 three_prime_UTR 58554441 58554696 58554441 ID=Msa0651190-mRNA-1:three_prime_utr;Parent=Msa0651190-mRNA-1
Gene Sequence

>Msa0651190

ATGGGTGCTTCTCTATCAGAGCTAGAGCAACCACCACAATCACAGCCACAACAAACACATCAACATTCACAGTTACAGCCACAACAACACCAACACCAACAAAATGAACCAACCAATAAGGAAGAATTACGATCACCTTCGAGAAGGGAAAATCTGTTGTCGTCTCCTCAACATCAAACAAAATTACCCTCCAGCAAGAAGGCAGTACAAAACTCTACAGTTGTAAAATCCAATGAGACTCAATCAGCAACCAAACCTTTGATCAAAGAACTAAGTTTGCCACATAACTATGAGTACATATTGAAGGATGCAGATTCACCGGTTGATAAATCTTCAAGGGAAAAGATGTGTGATCAGCTATATGCTGGAGTGTTCTTACATCATAAGACTAAGAAATATTGGGTAGAGAAGAACTCCAAAGCCAACTGTTTCATGTTGTATGCAAAAGCACTCTCAATCACCTGGGCAGAAGATCCAAATTATTGGAAATGGATACAGCAAAAAGATGTTAGTGAGGGGATGACTGAGGTGGCTGAACTGAAGAGAGTGTGTTGGTTAGAAGTTCATGGAAAATTCGACACAAGGAAGCTTTCACCAGGAATTTTATATCAAGTTTCATTTATTATAATGTTAAAAGATCCAGCTCAGGGTTGGGAACTTCCGGTGAATGTTCGACTTGTCCTTCCAGGAGGAAAGAAGCAGCAACACAAGGAAAATTTAATGGAAAAGTTAAGAGCACGGTGGATAGAGGTTCCAGTTGGTGAGTTTGTAGCATCTGAAAAAGATGGCGGTGAGATGGAGATATCAATGTTTGAATATGAAGGTGGTATGTGGAAACAAGGGCTTGTCATCAAAGGCATTGCTATCAAACCAAAGGAATGA

Protein sequence

>Msa0651190

MGASLSELEQPPQSQPQQTHQHSQLQPQQHQHQQNEPTNKEELRSPSRRENLLSSPQHQTKLPSSKKAVQNSTVVKSNETQSATKPLIKELSLPHNYEYILKDADSPVDKSSREKMCDQLYAGVFLHHKTKKYWVEKNSKANCFMLYAKALSITWAEDPNYWKWIQQKDVSEGMTEVAELKRVCWLEVHGKFDTRKLSPGILYQVSFIIMLKDPAQGWELPVNVRLVLPGGKKQQHKENLMEKLRARWIEVPVGEFVASEKDGGEMEISMFEYEGGMWKQGLVIKGIAIKPKE*