AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1318240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1318240 MtrunA17_Chr8g0348831 99.261 541 4 0 1 541 1 541 0.0 1102
Msa1318240 MtrunA17_Chr7g0247841 81.214 527 97 2 15 540 12 537 0.0 886
Msa1318240 MtrunA17_Chr6g0475601 71.236 518 145 3 20 536 23 537 0.0 760
Msa1318240 MtrunA17_Chr7g0214221 50.200 500 244 3 25 522 30 526 2.53e-173 500
Msa1318240 MtrunA17_Chr1g0213851 55.869 213 94 0 308 520 17 229 1.15e-82 257
Msa1318240 MtrunA17_Chr1g0213841 46.018 113 59 1 178 288 6 118 1.64e-23 95.9
Msa1318240 MtrunA17_Chr1g0203091 24.870 386 206 14 202 538 19 369 1.44e-22 99.8
Msa1318240 MtrunA17_Chr3g0139491 31.959 194 117 5 348 541 161 339 9.37e-21 93.6
Msa1318240 MtrunA17_Chr1g0147151 31.500 200 118 6 338 537 156 336 1.91e-19 90.1
Msa1318240 MtrunA17_Chr1g0213831 34.737 95 62 0 40 134 30 124 9.49e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1318240 AT1G01650.1 73.978 538 134 2 6 537 2 539 0.0 834
Msa1318240 AT1G63690.1 74.319 514 130 1 23 536 25 536 0.0 791
Msa1318240 AT1G63690.2 74.125 514 131 1 23 536 25 536 0.0 790
Msa1318240 AT1G01650.3 76.574 397 92 1 142 537 1 397 0.0 635
Msa1318240 AT1G01650.4 76.574 397 92 1 142 537 1 397 0.0 635
Msa1318240 AT1G01650.2 76.574 397 92 1 142 537 1 397 0.0 635
Msa1318240 AT2G43070.1 47.338 526 272 3 8 530 11 534 6.87e-160 466
Msa1318240 AT2G43070.3 47.338 526 272 3 8 530 70 593 6.35e-159 466
Msa1318240 AT2G43070.2 46.992 532 271 4 8 530 11 540 2.45e-158 462
Msa1318240 AT2G43070.4 46.992 532 271 4 8 530 70 599 1.63e-157 462
Msa1318240 AT1G05820.1 44.008 509 278 3 31 537 30 533 7.37e-145 428
Msa1318240 AT1G05820.2 44.842 475 258 2 31 503 30 502 3.48e-140 415
Msa1318240 AT1G05820.4 45.477 398 210 3 142 537 1 393 4.27e-119 357
Msa1318240 AT1G05820.3 40.849 377 219 2 31 405 30 404 4.76e-91 286
Msa1318240 AT4G33410.1 26.074 326 177 11 241 519 47 355 1.38e-23 103
Msa1318240 AT2G03120.1 33.684 190 111 5 348 537 161 335 3.02e-22 98.6

Find 152 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTATTAATGTTAATAATT+TGG 0.124360 8_4:+20201142 None:intergenic
ATATGAGGACAATGCCTTTC+TGG 0.135793 8_4:+20196011 None:intergenic
CGTGCTTGCTTCTTGTTTCT+TGG 0.199556 8_4:-20198856 Msa1318240:CDS
CTTTCTTATATGACATCTTA+TGG 0.212778 8_4:-20198026 Msa1318240:CDS
TTATACTTACCAAGTGTAAA+TGG 0.235488 8_4:+20196878 None:intergenic
AACATGAATGGTGGTAATTA+AGG 0.246356 8_4:+20195521 None:intergenic
GTTTGGTGTGTCTTTGGTTT+TGG 0.248253 8_4:-20200912 Msa1318240:CDS
GTTACAGCATCATTGGTTTC+GGG 0.276829 8_4:-20197762 Msa1318240:CDS
TGTACAAATTAATGTCATTC+TGG 0.277038 8_4:-20198827 Msa1318240:CDS
ACTCAAAATACCTTATTCTT+AGG 0.281740 8_4:+20200029 None:intergenic
GGTTACAGCATCATTGGTTT+CGG 0.284269 8_4:-20197763 Msa1318240:CDS
AGAATCAATATTCTAGTTGA+TGG 0.287318 8_4:-20195721 Msa1318240:three_prime_UTR
CTTCTTTCCCAACGACAAAA+AGG 0.287834 8_4:+20196070 None:intergenic
ACCACGTTTGTTTGATCCTT+GGG 0.292106 8_4:-20197788 Msa1318240:CDS
ATATGTCGCTTTAAACTTGA+TGG 0.299572 8_4:-20196936 Msa1318240:CDS
TATGTCAAGATACCGTTCTT+TGG 0.299611 8_4:-20198522 Msa1318240:CDS
CATAGTATTTGCAGTGGTTT+GGG 0.300952 8_4:-20198460 Msa1318240:CDS
GCATAGTATTTGCAGTGGTT+TGG 0.301464 8_4:-20198461 Msa1318240:CDS
AAAGAGGGAAGACTAATAAA+AGG 0.306553 8_4:-20195627 Msa1318240:three_prime_UTR
TTAATGTTACATCACACAAT+AGG 0.309336 8_4:+20195792 None:intergenic
GCTCACCAATGAGATCATTT+TGG 0.309493 8_4:-20199871 Msa1318240:CDS
GTTTCTGTTTGGTGTGTCTT+TGG 0.311149 8_4:-20200918 Msa1318240:CDS
TGGAATCATACCTTGAGATT+TGG 0.328219 8_4:+20198251 None:intergenic
TATGGGTGTTCGTTTCTAAA+TGG 0.328930 8_4:-20198008 Msa1318240:CDS
CCAATAAGAAGCACATAAAA+TGG 0.329319 8_4:+20199227 None:intergenic
ATCAATGTTGGTTAATTGAT+TGG 0.335483 8_4:+20195976 None:intergenic
TGGGGTGGTTACAGCATCAT+TGG 0.340318 8_4:-20197769 Msa1318240:CDS
AGGAAGATAGTGAGAAAGTT+AGG 0.341575 8_4:+20201081 None:intergenic
AATGAAACTGATGTTGATAT+TGG 0.345185 8_4:-20199526 Msa1318240:CDS
TTTCTTATATGACATCTTAT+GGG 0.349788 8_4:-20198025 Msa1318240:CDS
AATTCTTAGAATGGTTTCAT+TGG 0.353819 8_4:-20200972 Msa1318240:exon
TTGTGAGAATAACTTTGTTC+TGG 0.354785 8_4:-20200843 Msa1318240:intron
GTGTGGGCAATGACTGCTTA+TGG 0.356128 8_4:-20197266 Msa1318240:CDS
ATTCTGGTTTCTTGAAGTTC+TGG 0.356705 8_4:-20198811 Msa1318240:CDS
TTGTAGCAAGCCTAAGAATA+AGG 0.358188 8_4:-20200039 Msa1318240:intron
GTGCTTCTTATTGGTCTGCT+TGG 0.367692 8_4:-20199218 Msa1318240:CDS
CTGCTCAATAGCAGCTTCTC+TGG 0.371829 8_4:+20199191 None:intergenic
GTTATGCTTCCACAAGATGC+TGG 0.372035 8_4:-20199493 Msa1318240:CDS
TAATGTTACATCACACAATA+GGG 0.372400 8_4:+20195793 None:intergenic
TTTCGGGGACATTATCTTAC+CGG 0.373048 8_4:-20197746 Msa1318240:CDS
TTCTCACAACCAGGCCTTGT+AGG 0.383969 8_4:+20200857 None:intergenic
TACCACGTTTGTTTGATCCT+TGG 0.389231 8_4:-20197789 Msa1318240:CDS
TGGTTAACTTCTTCAATATG+AGG 0.390926 8_4:+20195996 None:intergenic
GTCCATGCTATCAAATCATT+TGG 0.392210 8_4:+20195851 None:intergenic
TGCACCGACGCCAACATATT+CGG 0.393329 8_4:+20200139 None:intergenic
TATTACATTACAATAGAGTT+AGG 0.394954 8_4:+20195565 None:intergenic
GTAGTATATGTGTTTCTGTT+TGG 0.400114 8_4:-20200929 Msa1318240:CDS
TAAGGGTCTACAAACTTGTT+TGG 0.401736 8_4:-20198679 Msa1318240:intron
AAGAATCTTAATTCTTAGAA+TGG 0.401879 8_4:-20200981 Msa1318240:exon
TTTCTCTGCACAGGTAGCTC+GGG 0.403689 8_4:-20197854 Msa1318240:intron
TCTTCGCTATTAGTTTATAT+AGG 0.407226 8_4:-20195937 Msa1318240:three_prime_UTR
GTTGGCGTCGGTGCAAGATT+TGG 0.409281 8_4:-20200131 Msa1318240:CDS
ATTCTTAGAATGGTTTCATT+GGG 0.419905 8_4:-20200971 Msa1318240:exon
TTAGGCTTGCTACAACAATC+AGG 0.422579 8_4:+20200047 None:intergenic
TTCATCAGCTATATTTGCCT+TGG 0.424615 8_4:+20199821 None:intergenic
CATGACAACTCTAGTATGAT+TGG 0.435387 8_4:+20200079 None:intergenic
GTTTGGCGGCTCTATTATCA+TGG 0.437582 8_4:-20198662 Msa1318240:intron
CCACACCATCAATCCAAGTT+GGG 0.441766 8_4:+20200168 None:intergenic
AAAGTCCCAACTTGGATTGA+TGG 0.441839 8_4:-20200173 Msa1318240:CDS
CTCATTATAAATTATCGTAC+AGG 0.453906 8_4:-20199780 Msa1318240:intron
ACAAGATGCTGGGTTAAACT+TGG 0.454280 8_4:-20199482 Msa1318240:CDS
GCAATGACTGCTTATGGTCT+AGG 0.461735 8_4:-20197260 Msa1318240:intron
ATACTCTCCACTTCGTCCAT+TGG 0.465650 8_4:-20199292 Msa1318240:CDS
GTTAGGTCAAAGTCCCAACT+TGG 0.470294 8_4:-20200181 Msa1318240:intron
CTGGTTTCTTGAAGTTCTGG+TGG 0.471891 8_4:-20198808 Msa1318240:CDS
GTAACAGCAAGTGTCAGATA+TGG 0.481241 8_4:+20198492 None:intergenic
ATCTTGACATATGTTTGTGC+AGG 0.481494 8_4:+20198534 None:intergenic
TTTGTTTGGAGAGAAAATAA+AGG 0.482312 8_4:+20201061 None:intergenic
TATACTTACCAAGTGTAAAT+GGG 0.486632 8_4:+20196879 None:intergenic
TCCACACCATCAATCCAAGT+TGG 0.493462 8_4:+20200167 None:intergenic
GTGCACCAAAATGATCTCAT+TGG 0.493592 8_4:+20199866 None:intergenic
CAAGTTATTGTAGTTTCAGA+TGG 0.495005 8_4:-20198566 Msa1318240:intron
GGGTCTACAAACTTGTTTGG+CGG 0.497353 8_4:-20198676 Msa1318240:CDS
CTATATAGAGCAAAGCTGGC+TGG 0.507003 8_4:+20196903 None:intergenic
TTCGGGGACATTATCTTACC+GGG 0.511477 8_4:-20197745 Msa1318240:CDS
TGCAAGATTTGGTCCTACAT+TGG 0.513388 8_4:-20200120 Msa1318240:CDS
GATGTTGCTCCTACAAGGCC+TGG 0.513538 8_4:-20200866 Msa1318240:CDS
TGTCTGCACTATTGATTCAA+AGG 0.518068 8_4:+20195412 None:intergenic
CAGAGAAGCTGCTATTGAGC+AGG 0.520118 8_4:-20199190 Msa1318240:CDS
TCGTCCATTGGTTGATGTTG+CGG 0.521538 8_4:-20199280 Msa1318240:CDS
TTATGCTTCCACAAGATGCT+GGG 0.525231 8_4:-20199492 Msa1318240:CDS
GCAAAGAAGAACCTCCGAGC+TGG 0.526351 8_4:-20197296 Msa1318240:CDS
GGGACTATATAGAGCAAAGC+TGG 0.526557 8_4:+20196899 None:intergenic
GGGTGTTCGTTTCTAAATGG+TGG 0.527404 8_4:-20198005 Msa1318240:CDS
TTAGGAGAAGGAAGTGACGG+TGG 0.531370 8_4:+20201099 None:intergenic
AAGTTTAACCCAGCATCTTG+TGG 0.536543 8_4:+20199484 None:intergenic
GTCGCTTTAAACTTGATGGA+TGG 0.538119 8_4:-20196932 Msa1318240:CDS
CAAGCATCATATGCGTGGAT+TGG 0.538799 8_4:-20198426 Msa1318240:CDS
ATGATGATGTTGCTCCTACA+AGG 0.540724 8_4:-20200871 Msa1318240:CDS
CTTCTGAGATAGCAAGTTGG+AGG 0.542806 8_4:-20195759 Msa1318240:three_prime_UTR
AAGTTAGGAGAAGGAAGTGA+CGG 0.543039 8_4:+20201096 None:intergenic
CAAAACAAGAATAACATGAA+TGG 0.543141 8_4:+20195509 None:intergenic
TCATGAGAGCGTGATGATAG+TGG 0.543810 8_4:-20197980 Msa1318240:intron
AAGTGGAGAGTATAACTGTA+TGG 0.543946 8_4:+20199302 None:intergenic
CGTGGTAACTTGAGAAGCAT+GGG 0.546674 8_4:+20197805 None:intergenic
GGAGAGTGATAGCAACCGTT+AGG 0.548518 8_4:-20195916 Msa1318240:three_prime_UTR
TTTGTACTATGTAGGAATGA+GGG 0.548793 8_4:+20201188 None:intergenic
AATGAGAATTGCTGAAGCAC+CGG 0.549355 8_4:+20199797 None:intergenic
ATAGTGAGAAAGTTAGGAGA+AGG 0.550693 8_4:+20201087 None:intergenic
CACTGCAAATACTATGCAGA+AGG 0.550804 8_4:+20198467 None:intergenic
GAAAATGCTACTACAAGTCC+CGG 0.560919 8_4:+20197727 None:intergenic
ACGTGGTAACTTGAGAAGCA+TGG 0.564772 8_4:+20197804 None:intergenic
GTTTGTACTATGTAGGAATG+AGG 0.566585 8_4:+20201187 None:intergenic
GCAAATATAGCTGATGAAGC+CGG 0.576888 8_4:-20199816 Msa1318240:CDS
CTTCTTCTGAGATAGCAAGT+TGG 0.578048 8_4:-20195762 Msa1318240:three_prime_UTR
CCACGTTTGTTTGATCCTTG+GGG 0.578234 8_4:-20197787 Msa1318240:CDS
CACGGAAGAAGATTCAAAAG+AGG 0.579546 8_4:-20195643 Msa1318240:three_prime_UTR
CAATCATACTAGAGTTGTCA+TGG 0.579681 8_4:-20200078 Msa1318240:CDS
GCAGAAAGTGTTGGTTCTCG+TGG 0.579848 8_4:-20198918 Msa1318240:CDS
CCCAACTTGGATTGATGGTG+TGG 0.588257 8_4:-20200168 Msa1318240:CDS
GGATTATGAGAAGACTCTCA+TGG 0.588519 8_4:+20195690 None:intergenic
TGTTGGTTCTCGTGGTTACG+TGG 0.588787 8_4:-20198910 Msa1318240:CDS
TATATAGTCCCATTTACACT+TGG 0.589134 8_4:-20196887 Msa1318240:intron
ACGGAAGAAGATTCAAAAGA+GGG 0.590527 8_4:-20195642 Msa1318240:three_prime_UTR
GGACAAGAGGAGAACCAGAA+AGG 0.592548 8_4:-20196025 Msa1318240:CDS
CTTCTGCATAGTATTTGCAG+TGG 0.594852 8_4:-20198466 Msa1318240:CDS
AATCTGCTGAAGATCAATGT+TGG 0.596723 8_4:+20195964 None:intergenic
CGTTTGTTTGATCCTTGGGG+TGG 0.597198 8_4:-20197784 Msa1318240:CDS
TTCTCTGCACAGGTAGCTCG+GGG 0.597507 8_4:-20197853 Msa1318240:intron
TCCGAGCTGGATATTTCGTG+TGG 0.598486 8_4:-20197283 Msa1318240:CDS
TTGTCGTTGGGAAAGAAGAG+AGG 0.603580 8_4:-20196065 Msa1318240:CDS
AGCCAAATGATTTGATAGCA+TGG 0.603795 8_4:-20195853 Msa1318240:three_prime_UTR
TCTTGTGGAAGCATAACAGC+AGG 0.606664 8_4:+20199499 None:intergenic
AGAAGACTCTCATGGAAGCA+AGG 0.609072 8_4:+20195698 None:intergenic
TTACAGCATCATTGGTTTCG+GGG 0.610146 8_4:-20197761 Msa1318240:CDS
CCCACACGAAATATCCAGCT+CGG 0.612171 8_4:+20197282 None:intergenic
TGTTCGCATACCAAATCTCA+AGG 0.612517 8_4:-20198261 Msa1318240:intron
AGTATTTGCAGTGGTTTGGG+CGG 0.612976 8_4:-20198457 Msa1318240:CDS
AGCAAGTGTCAGATATGGAA+CGG 0.613995 8_4:+20198497 None:intergenic
GAATATGTTGCAGAAAGTGT+TGG 0.615196 8_4:-20198927 Msa1318240:CDS
ACATCAACCAATGGACGAAG+TGG 0.617248 8_4:+20199285 None:intergenic
ACATATACACAATGTCCTAA+CGG 0.618294 8_4:+20195901 None:intergenic
TATGGAACGGCTCCAAAGAA+CGG 0.619684 8_4:+20198510 None:intergenic
AACGACAAGCATCATATGCG+TGG 0.621796 8_4:-20198431 Msa1318240:CDS
GTGGAAAACGCCGAATATGT+TGG 0.624145 8_4:-20200149 Msa1318240:CDS
AAAATGTAGTTTCACAACCA+AGG 0.628218 8_4:-20199838 Msa1318240:CDS
AACAAGAATAACATGAATGG+TGG 0.629580 8_4:+20195512 None:intergenic
CACATACAAAATAACTCCAT+AGG 0.631134 8_4:-20199454 Msa1318240:intron
GGTGATAAGAGTGGAGAAGA+CGG 0.633523 8_4:-20197832 Msa1318240:CDS
TTAAACTTGATGGATGGACA+TGG 0.640581 8_4:-20196926 Msa1318240:CDS
TGTAAAGCAAAATGACCTCA+CGG 0.641240 8_4:-20195661 Msa1318240:three_prime_UTR
GTAGCTCGGGGTGATAAGAG+TGG 0.642633 8_4:-20197841 Msa1318240:CDS
TTAAAGCGACATATGTGATG+AGG 0.646719 8_4:+20196945 None:intergenic
ACTTCCGCAACATCAACCAA+TGG 0.654114 8_4:+20199276 None:intergenic
AACGCCGAATATGTTGGCGT+CGG 0.656966 8_4:-20200143 Msa1318240:CDS
ACAAAGTTATTCTCACAACC+AGG 0.666217 8_4:+20200848 None:intergenic
CCGAGCTGGATATTTCGTGT+GGG 0.666995 8_4:-20197282 Msa1318240:CDS
ACTGCAAATACTATGCAGAA+GGG 0.683125 8_4:+20198468 None:intergenic
CCCCAAGGATCAAACAAACG+TGG 0.683397 8_4:+20197787 None:intergenic
GGCTTGCTACAACAATCAGG+AGG 0.689982 8_4:+20200050 None:intergenic
ATGATGCTGTAACCACCCCA+AGG 0.696121 8_4:+20197772 None:intergenic
ACACGAAATATCCAGCTCGG+AGG 0.740591 8_4:+20197285 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTATTAATGTTAATAATT+TGG + chr8_4:20195476-20195495 None:intergenic 10.0%
!!! AAAAATCATTTTTTTAATTG+AGG - chr8_4:20195925-20195944 Msa1318240:three_prime_UTR 10.0%
!!! AATTCTTTTATAATTGTTTT+TGG - chr8_4:20195977-20195996 Msa1318240:CDS 10.0%
!!! AATTTTTTACATTAAAATGT+AGG + chr8_4:20199153-20199172 None:intergenic 10.0%
!! TATATGAAGAATAAAGAATT+TGG + chr8_4:20195800-20195819 None:intergenic 15.0%
!!! AAATAATAAAGTTTTCGATT+TGG + chr8_4:20196672-20196691 None:intergenic 15.0%
!! TATTTATAAACTCGTTAATT+TGG - chr8_4:20197621-20197640 Msa1318240:intron 15.0%
!! ATTAAGATAGATTATAGAAA+CGG + chr8_4:20199055-20199074 None:intergenic 15.0%
!! ATAAAAAACTGAAATAATGA+TGG + chr8_4:20199594-20199613 None:intergenic 15.0%
!!! TTTCAGTTTTTTATAGTAAT+CGG - chr8_4:20199600-20199619 Msa1318240:intron 15.0%
!!! TAAGTTCTTATTTACATATA+TGG - chr8_4:20200271-20200290 Msa1318240:intron 15.0%
!! AAGAATCTTAATTCTTAGAA+TGG - chr8_4:20195634-20195653 Msa1318240:three_prime_UTR 20.0%
!! TTAATTGAGGAAAGAAAAAT+TGG - chr8_4:20195938-20195957 Msa1318240:three_prime_UTR 20.0%
!!! TTTGAACTTTCTGTTTTTTA+AGG - chr8_4:20196007-20196026 Msa1318240:CDS 20.0%
!!! TTGAACTTTCTGTTTTTTAA+GGG - chr8_4:20196008-20196027 Msa1318240:CDS 20.0%
!!! ATCATATCATTTTCAATAAC+AGG + chr8_4:20196246-20196265 None:intergenic 20.0%
!!! TGTTTTTCTTTAATGCTTTT+TGG - chr8_4:20196886-20196905 Msa1318240:intron 20.0%
!!! GTTTTTCTTTAATGCTTTTT+GGG - chr8_4:20196887-20196906 Msa1318240:intron 20.0%
!!! AATTAGTTGTTGATTTTCTT+TGG - chr8_4:20197219-20197238 Msa1318240:intron 20.0%
!!! TATCTTTTAGTGTGAAAAAT+TGG + chr8_4:20197486-20197505 None:intergenic 20.0%
!! AAATAGAGACAAATAATAAC+CGG - chr8_4:20197560-20197579 Msa1318240:intron 20.0%
!!! TTAATTTGGTTACTGATATA+TGG - chr8_4:20197635-20197654 Msa1318240:intron 20.0%
!!! CTGATATATGGATAATTTTA+TGG - chr8_4:20197647-20197666 Msa1318240:intron 20.0%
!! ATGAACATACAAATATTAGA+GGG + chr8_4:20197910-20197929 None:intergenic 20.0%
!! TATGAACATACAAATATTAG+AGG + chr8_4:20197911-20197930 None:intergenic 20.0%
!! ATAACAGTATTAAAAGTCTA+GGG + chr8_4:20198276-20198295 None:intergenic 20.0%
!! TTTCTTATATGACATCTTAT+GGG - chr8_4:20198590-20198609 Msa1318240:intron 20.0%
!!! TATATTTCTATCTTCACTTA+TGG - chr8_4:20199437-20199456 Msa1318240:intron 20.0%
!! AAATTTAGAGACGAAAAAAT+AGG - chr8_4:20199490-20199509 Msa1318240:CDS 20.0%
!! ATAAAATTGGTCATCAAATT+TGG + chr8_4:20199554-20199573 None:intergenic 20.0%
!! TTTCAAATTTATGAGTAAGA+TGG + chr8_4:20199763-20199782 None:intergenic 20.0%
!! CTATTCTTCAATGTATTATT+TGG - chr8_4:20199806-20199825 Msa1318240:CDS 20.0%
!!! TTCTTATTTACATATATGGA+TGG - chr8_4:20200275-20200294 Msa1318240:intron 20.0%
!! TATTACATTACAATAGAGTT+AGG + chr8_4:20201053-20201072 None:intergenic 20.0%
!!! TTTTGTTGTTTGTACTATGT+AGG + chr8_4:20195438-20195457 None:intergenic 25.0%
! TTTGTTTGGAGAGAAAATAA+AGG + chr8_4:20195557-20195576 None:intergenic 25.0%
! GATTCTTGAATGAAAAACTA+AGG + chr8_4:20195621-20195640 None:intergenic 25.0%
! AATTCTTAGAATGGTTTCAT+TGG - chr8_4:20195643-20195662 Msa1318240:three_prime_UTR 25.0%
! ATTCTTAGAATGGTTTCATT+GGG - chr8_4:20195644-20195663 Msa1318240:three_prime_UTR 25.0%
!!! TTTATGTGTGATTTTGATCT+TGG - chr8_4:20195842-20195861 Msa1318240:three_prime_UTR 25.0%
! TTTGGTAGAACTTATGAAAA+TGG - chr8_4:20196076-20196095 Msa1318240:CDS 25.0%
! TTAGAAAATAGAGTGTAGTT+AGG - chr8_4:20196286-20196305 Msa1318240:intron 25.0%
! AACAAAATCTGCAAATGTAT+TGG - chr8_4:20196346-20196365 Msa1318240:intron 25.0%
!! AAGTAAACTTTTATGCAATG+TGG - chr8_4:20196389-20196408 Msa1318240:intron 25.0%
!!! TTTTCTTTTGATTCCAATGT+AGG + chr8_4:20196511-20196530 None:intergenic 25.0%
! ACTCAAAATACCTTATTCTT+AGG + chr8_4:20196589-20196608 None:intergenic 25.0%
! GAAAACTATACTTCACAATT+CGG + chr8_4:20196650-20196669 None:intergenic 25.0%
! CTCATTATAAATTATCGTAC+AGG - chr8_4:20196835-20196854 Msa1318240:intron 25.0%
!! TGACTATTTAATTTATGCCA+TGG - chr8_4:20197003-20197022 Msa1318240:intron 25.0%
! AATGAAACTGATGTTGATAT+TGG - chr8_4:20197089-20197108 Msa1318240:intron 25.0%
! AATAGAGACAAATAATAACC+GGG - chr8_4:20197561-20197580 Msa1318240:intron 25.0%
! TGTACAAATTAATGTCATTC+TGG - chr8_4:20197788-20197807 Msa1318240:CDS 25.0%
! TTGTATGTTCATATGCTTTA+AGG - chr8_4:20197918-20197937 Msa1318240:intron 25.0%
! TGTATGTTCATATGCTTTAA+GGG - chr8_4:20197919-20197938 Msa1318240:intron 25.0%
! TCAATTCGGATAGAAATAAT+AGG + chr8_4:20198026-20198045 None:intergenic 25.0%
! GATAACAGTATTAAAAGTCT+AGG + chr8_4:20198277-20198296 None:intergenic 25.0%
! TTTCACATATACTTCTTTCT+TGG - chr8_4:20198535-20198554 Msa1318240:CDS 25.0%
! CTTTCTTATATGACATCTTA+TGG - chr8_4:20198589-20198608 Msa1318240:intron 25.0%
! AAAGCCAAACTAATGTATTT+GGG + chr8_4:20198725-20198744 None:intergenic 25.0%
! TAAAGCCAAACTAATGTATT+TGG + chr8_4:20198726-20198745 None:intergenic 25.0%
! GATCATACAATATATGTATC+TGG - chr8_4:20198931-20198950 Msa1318240:CDS 25.0%
! ATAATAATAAGATGACCAGA+AGG + chr8_4:20198957-20198976 None:intergenic 25.0%
!! CTATGTCGATATGTATTTTA+CGG + chr8_4:20199185-20199204 None:intergenic 25.0%
! ATTGTACTGTATCATGTTAA+CGG - chr8_4:20199243-20199262 Msa1318240:CDS 25.0%
! ATACAAAATGTGAATGTCTA+CGG - chr8_4:20199408-20199427 Msa1318240:intron 25.0%
!! ACTGAAATAATGATGGAAAT+TGG + chr8_4:20199587-20199606 None:intergenic 25.0%
!!! TTCGTTGAATTTTAATATGC+AGG - chr8_4:20199644-20199663 Msa1318240:intron 25.0%
! TATACTTACCAAGTGTAAAT+GGG + chr8_4:20199739-20199758 None:intergenic 25.0%
! TTATACTTACCAAGTGTAAA+TGG + chr8_4:20199740-20199759 None:intergenic 25.0%
! ATGTGAACAGATCATATTAA+TGG + chr8_4:20199879-20199898 None:intergenic 25.0%
! CTCATTTACAATGAAATAAC+CGG - chr8_4:20200022-20200041 Msa1318240:intron 25.0%
!!! TTTTTAGAAAACATTGGGAA+AGG + chr8_4:20200058-20200077 None:intergenic 25.0%
!!! GTGGATTTTTAGAAAACATT+GGG + chr8_4:20200063-20200082 None:intergenic 25.0%
!!! TGTGGATTTTTAGAAAACAT+TGG + chr8_4:20200064-20200083 None:intergenic 25.0%
!!! TGATTTTAGTTTCCAATAGA+TGG - chr8_4:20200327-20200346 Msa1318240:intron 25.0%
!! ATCAATGTTGGTTAATTGAT+TGG + chr8_4:20200642-20200661 None:intergenic 25.0%
!! TCTTCGCTATTAGTTTATAT+AGG - chr8_4:20200678-20200697 Msa1318240:intron 25.0%
! TAATGTTACATCACACAATA+GGG + chr8_4:20200825-20200844 None:intergenic 25.0%
! TTAATGTTACATCACACAAT+AGG + chr8_4:20200826-20200845 None:intergenic 25.0%
!! AGAATCAATATTCTAGTTGA+TGG - chr8_4:20200894-20200913 Msa1318240:CDS 25.0%
! CAAAACAAGAATAACATGAA+TGG + chr8_4:20201109-20201128 None:intergenic 25.0%
TTTGTACTATGTAGGAATGA+GGG + chr8_4:20195430-20195449 None:intergenic 30.0%
! GTAGTATATGTGTTTCTGTT+TGG - chr8_4:20195686-20195705 Msa1318240:three_prime_UTR 30.0%
TTGTGAGAATAACTTTGTTC+TGG - chr8_4:20195772-20195791 Msa1318240:three_prime_UTR 30.0%
GAAAGAAAAATTGGACTGTT+TGG - chr8_4:20195947-20195966 Msa1318240:three_prime_UTR 30.0%
!! TAAGTTCTTCTGAGACTATT+TGG - chr8_4:20196058-20196077 Msa1318240:CDS 30.0%
ATAGAGTGTAGTTAGGTAAT+TGG - chr8_4:20196293-20196312 Msa1318240:intron 30.0%
TGCTAACAAAATGTTCTGTT+AGG - chr8_4:20196417-20196436 Msa1318240:intron 30.0%
! TTGTGAAACTACATTTTCCT+CGG + chr8_4:20196774-20196793 None:intergenic 30.0%
AAAATGTAGTTTCACAACCA+AGG - chr8_4:20196777-20196796 Msa1318240:intron 30.0%
GTTTCTTCAAAAAAAGACCA+TGG + chr8_4:20197023-20197042 None:intergenic 30.0%
CACATACAAAATAACTCCAT+AGG - chr8_4:20197161-20197180 Msa1318240:intron 30.0%
!!! TTGTTGATTTTCTTTGGCAT+AGG - chr8_4:20197225-20197244 Msa1318240:intron 30.0%
TGTACATGCAATAGAACAAA+GGG + chr8_4:20197275-20197294 None:intergenic 30.0%
TTGTACATGCAATAGAACAA+AGG + chr8_4:20197276-20197295 None:intergenic 30.0%
! CCAATAAGAAGCACATAAAA+TGG + chr8_4:20197391-20197410 None:intergenic 30.0%
! CCATTTTATGTGCTTCTTAT+TGG - chr8_4:20197388-20197407 Msa1318240:intron 30.0%
AATTGGCATGAAAAGAAACT+AGG + chr8_4:20197469-20197488 None:intergenic 30.0%
ACATAAAAAACACTTTCTCC+CGG + chr8_4:20197582-20197601 None:intergenic 30.0%
! ATGGATAATTTTATGGTTGC+AGG - chr8_4:20197654-20197673 Msa1318240:intron 30.0%
ATCTACAACAACAAACTTCA+AGG + chr8_4:20197991-20198010 None:intergenic 30.0%
!! GTTTGTTGTTGTAGATTATG+AGG - chr8_4:20197995-20198014 Msa1318240:CDS 30.0%
!! ACAATAACTTGCTGTCAATT+CGG + chr8_4:20198040-20198059 None:intergenic 30.0%
CAAGTTATTGTAGTTTCAGA+TGG - chr8_4:20198049-20198068 Msa1318240:CDS 30.0%
ATTTCTTATGACTGTCATTC+AGG - chr8_4:20198300-20198319 Msa1318240:intron 30.0%
TTTCTTATGACTGTCATTCA+GGG - chr8_4:20198301-20198320 Msa1318240:intron 30.0%
TTACATGTTTGTGATACTCT+TGG - chr8_4:20198416-20198435 Msa1318240:CDS 30.0%
TATACTTCTTTCTTGGTATC+AGG - chr8_4:20198542-20198561 Msa1318240:CDS 30.0%
CCACTAGTATAGAACAATTT+AGG + chr8_4:20198694-20198713 None:intergenic 30.0%
CCTAAATTGTTCTATACTAG+TGG - chr8_4:20198691-20198710 Msa1318240:intron 30.0%
!! AGTTGTTTCTACAATTGAAC+AGG - chr8_4:20198994-20199013 Msa1318240:intron 30.0%
! ATATGTATTTTACGGACGTT+TGG + chr8_4:20199177-20199196 None:intergenic 30.0%
CGTAAAATACATATCGACAT+AGG - chr8_4:20199183-20199202 Msa1318240:CDS 30.0%
ATAGGATCTCCATGTAAAAT+AGG - chr8_4:20199201-20199220 Msa1318240:CDS 30.0%
! CTACTTGTACCTATTTTACA+TGG + chr8_4:20199213-20199232 None:intergenic 30.0%
!! CTATTGACAACTACTTTTAC+AGG - chr8_4:20199284-20199303 Msa1318240:CDS 30.0%
!! ACTACTTTTACAGGTATGAT+TGG - chr8_4:20199293-20199312 Msa1318240:CDS 30.0%
ATTTCTATCTTCACTTATGG+AGG - chr8_4:20199440-20199459 Msa1318240:intron 30.0%
TGGAGACGGAAAAATAAAAT+TGG + chr8_4:20199567-20199586 None:intergenic 30.0%
! ATAATGATGGAAATTGGAGA+CGG + chr8_4:20199581-20199600 None:intergenic 30.0%
!! ATATGTCGCTTTAAACTTGA+TGG - chr8_4:20199679-20199698 Msa1318240:intron 30.0%
TATATAGTCCCATTTACACT+TGG - chr8_4:20199728-20199747 Msa1318240:intron 30.0%
TATACTTCCGAACTAACTAT+AGG - chr8_4:20200177-20200196 Msa1318240:CDS 30.0%
ATACTTCCGAACTAACTATA+GGG - chr8_4:20200178-20200197 Msa1318240:CDS 30.0%
TCTACATTATTGCCATCTAT+TGG + chr8_4:20200342-20200361 None:intergenic 30.0%
GTACCGAAAAAACAGTAAAT+TGG - chr8_4:20200373-20200392 Msa1318240:intron 30.0%
!!! GGACCAATTTACTGTTTTTT+CGG + chr8_4:20200379-20200398 None:intergenic 30.0%
GTATTGCATAACATGAAAAC+TGG - chr8_4:20200479-20200498 Msa1318240:intron 30.0%
GTCATGTAAATCATAATTGC+AGG - chr8_4:20200520-20200539 Msa1318240:intron 30.0%
TGGTTAACTTCTTCAATATG+AGG + chr8_4:20200622-20200641 None:intergenic 30.0%
ACATATACACAATGTCCTAA+CGG + chr8_4:20200717-20200736 None:intergenic 30.0%
AAAGAGGGAAGACTAATAAA+AGG - chr8_4:20200988-20201007 Msa1318240:five_prime_UTR 30.0%
AACATGAATGGTGGTAATTA+AGG + chr8_4:20201097-20201116 None:intergenic 30.0%
AACAAGAATAACATGAATGG+TGG + chr8_4:20201106-20201125 None:intergenic 30.0%
GTTTGTACTATGTAGGAATG+AGG + chr8_4:20195431-20195450 None:intergenic 35.0%
ATAGTGAGAAAGTTAGGAGA+AGG + chr8_4:20195531-20195550 None:intergenic 35.0%
AGGAAGATAGTGAGAAAGTT+AGG + chr8_4:20195537-20195556 None:intergenic 35.0%
ACAAAGTTATTCTCACAACC+AGG + chr8_4:20195770-20195789 None:intergenic 35.0%
TTTGCTTGCTTAGAAACTGT+TGG - chr8_4:20195873-20195892 Msa1318240:three_prime_UTR 35.0%
GAAAAATTGGACTGTTTGGT+TGG - chr8_4:20195951-20195970 Msa1318240:three_prime_UTR 35.0%
AATTGAGCATACATCACACA+AGG + chr8_4:20196209-20196228 None:intergenic 35.0%
!! TCTGCAAATGTATTGGCTTA+TGG - chr8_4:20196353-20196372 Msa1318240:intron 35.0%
CATGACAACTCTAGTATGAT+TGG + chr8_4:20196539-20196558 None:intergenic 35.0%
CAATCATACTAGAGTTGTCA+TGG - chr8_4:20196537-20196556 Msa1318240:intron 35.0%
TTGTAGCAAGCCTAAGAATA+AGG - chr8_4:20196576-20196595 Msa1318240:intron 35.0%
CAATTCGGTAAAGTTGCATT+TGG + chr8_4:20196635-20196654 None:intergenic 35.0%
TTCATCAGCTATATTTGCCT+TGG + chr8_4:20196797-20196816 None:intergenic 35.0%
!! CTGTACAGAACTTTTCAAGA+TGG - chr8_4:20197055-20197074 Msa1318240:intron 35.0%
!! ACTTTTCAAGATGGTTTGTG+AGG - chr8_4:20197064-20197083 Msa1318240:intron 35.0%
CATAGGTATCTCAACTTTCT+CGG - chr8_4:20197178-20197197 Msa1318240:intron 35.0%
GTATAACTGTATGGACACTT+TGG + chr8_4:20197307-20197326 None:intergenic 35.0%
! AAGTGGAGAGTATAACTGTA+TGG + chr8_4:20197316-20197335 None:intergenic 35.0%
! GAATATGTTGCAGAAAGTGT+TGG - chr8_4:20197688-20197707 Msa1318240:intron 35.0%
!! ATTCTGGTTTCTTGAAGTTC+TGG - chr8_4:20197804-20197823 Msa1318240:CDS 35.0%
! TTTTTGCATTGGAGGAATAG+AGG - chr8_4:20197834-20197853 Msa1318240:CDS 35.0%
! TAAGGGTCTACAAACTTGTT+TGG - chr8_4:20197936-20197955 Msa1318240:intron 35.0%
ATCTTGACATATGTTTGTGC+AGG + chr8_4:20198084-20198103 None:intergenic 35.0%
TATGTCAAGATACCGTTCTT+TGG - chr8_4:20198093-20198112 Msa1318240:intron 35.0%
ACTGCAAATACTATGCAGAA+GGG + chr8_4:20198150-20198169 None:intergenic 35.0%
CATAGTATTTGCAGTGGTTT+GGG - chr8_4:20198155-20198174 Msa1318240:intron 35.0%
TGGAATCATACCTTGAGATT+TGG + chr8_4:20198367-20198386 None:intergenic 35.0%
ATGATTCCAAAGTCAACCTT+AGG - chr8_4:20198378-20198397 Msa1318240:intron 35.0%
TGATTCCAAAGTCAACCTTA+GGG - chr8_4:20198379-20198398 Msa1318240:intron 35.0%
TCGGTTTAGCTGTTCATTAA+TGG + chr8_4:20198457-20198476 None:intergenic 35.0%
! CCATCACATCAACATTTTGT+CGG + chr8_4:20198476-20198495 None:intergenic 35.0%
! ATGGCTTTGCTTGATACTAT+TGG - chr8_4:20198492-20198511 Msa1318240:CDS 35.0%
TTCTTTCTTGGTATCAGGTT+GGG - chr8_4:20198547-20198566 Msa1318240:CDS 35.0%
TATGGGTGTTCGTTTCTAAA+TGG - chr8_4:20198607-20198626 Msa1318240:intron 35.0%
CCAAACTAATGTATTTGGGT+TGG + chr8_4:20198721-20198740 None:intergenic 35.0%
CCAACCCAAATACATTAGTT+TGG - chr8_4:20198718-20198737 Msa1318240:intron 35.0%
! TTGTAGTAGCATTTTCACTG+AGG - chr8_4:20198895-20198914 Msa1318240:CDS 35.0%
! AATATATGTATCTGGCCTTC+TGG - chr8_4:20198939-20198958 Msa1318240:CDS 35.0%
! CTTTTACAGGTATGATTGGT+TGG - chr8_4:20199297-20199316 Msa1318240:CDS 35.0%
TAGGTATGATACACATGCTT+TGG - chr8_4:20199374-20199393 Msa1318240:intron 35.0%
AGGTATGATACACATGCTTT+GGG - chr8_4:20199375-20199394 Msa1318240:intron 35.0%
TTAAAGCGACATATGTGATG+AGG + chr8_4:20199673-20199692 None:intergenic 35.0%
! TTAAACTTGATGGATGGACA+TGG - chr8_4:20199689-20199708 Msa1318240:intron 35.0%
! GAAAGTGTAAACACCTATAG+TGG - chr8_4:20199779-20199798 Msa1318240:intron 35.0%
GAAGAATAGAATGCCACTAT+AGG + chr8_4:20199795-20199814 None:intergenic 35.0%
ATTATTTGGTTGCGCTCTAT+TGG - chr8_4:20199820-20199839 Msa1318240:CDS 35.0%
AAGACGATAAAGAGTTGTGT+TGG - chr8_4:20199915-20199934 Msa1318240:intron 35.0%
AACGCAGCATATAATTAGCA+CGG + chr8_4:20200001-20200020 None:intergenic 35.0%
TTAGAAAACATTGGGAAAGG+AGG + chr8_4:20200055-20200074 None:intergenic 35.0%
TATACTTGCAAACGTCTATG+TGG + chr8_4:20200082-20200101 None:intergenic 35.0%
TTGCAAGTATACTTCTTGAC+AGG - chr8_4:20200091-20200110 Msa1318240:CDS 35.0%
TGCAAGTATACTTCTTGACA+GGG - chr8_4:20200092-20200111 Msa1318240:CDS 35.0%
!! GGAAAAACTGTGTTTTTGTC+CGG - chr8_4:20200113-20200132 Msa1318240:CDS 35.0%
TACTTCCGAACTAACTATAG+GGG - chr8_4:20200179-20200198 Msa1318240:CDS 35.0%
TAGATGGCAATAATGTAGAC+TGG - chr8_4:20200343-20200362 Msa1318240:intron 35.0%
!!! TACTGTTTTTTCGGTACACA+AGG + chr8_4:20200370-20200389 None:intergenic 35.0%
CCTAAATGTATGCTATGTCA+TGG + chr8_4:20200460-20200479 None:intergenic 35.0%
CCATGACATAGCATACATTT+AGG - chr8_4:20200457-20200476 Msa1318240:intron 35.0%
! CTCAAGATTTTATGGACAAG+AGG - chr8_4:20200577-20200596 Msa1318240:intron 35.0%
AATCTGCTGAAGATCAATGT+TGG + chr8_4:20200654-20200673 None:intergenic 35.0%
! AGCCAAATGATTTGATAGCA+TGG - chr8_4:20200762-20200781 Msa1318240:intron 35.0%
GTCCATGCTATCAAATCATT+TGG + chr8_4:20200767-20200786 None:intergenic 35.0%
! TCATTTTGCTTTACAGGACT+TGG + chr8_4:20200949-20200968 None:intergenic 35.0%
TGTAAAGCAAAATGACCTCA+CGG - chr8_4:20200954-20200973 Msa1318240:CDS 35.0%
ACGGAAGAAGATTCAAAAGA+GGG - chr8_4:20200973-20200992 Msa1318240:exon 35.0%
AAGTTAGGAGAAGGAAGTGA+CGG + chr8_4:20195522-20195541 None:intergenic 40.0%
!! GTTTCTGTTTGGTGTGTCTT+TGG - chr8_4:20195697-20195716 Msa1318240:three_prime_UTR 40.0%
!!! GTTTGGTGTGTCTTTGGTTT+TGG - chr8_4:20195703-20195722 Msa1318240:three_prime_UTR 40.0%
! ATGATGATGTTGCTCCTACA+AGG - chr8_4:20195744-20195763 Msa1318240:three_prime_UTR 40.0%
GTTGGAACAGTCAAGAGATT+TGG - chr8_4:20195891-20195910 Msa1318240:three_prime_UTR 40.0%
AAAGTCCCAACTTGGATTGA+TGG - chr8_4:20196442-20196461 Msa1318240:intron 40.0%
! TGCAAGATTTGGTCCTACAT+TGG - chr8_4:20196495-20196514 Msa1318240:intron 40.0%
!! TTAGGCTTGCTACAACAATC+AGG + chr8_4:20196571-20196590 None:intergenic 40.0%
! GCTCACCAATGAGATCATTT+TGG - chr8_4:20196744-20196763 Msa1318240:intron 40.0%
GTGCACCAAAATGATCTCAT+TGG + chr8_4:20196752-20196771 None:intergenic 40.0%
GCAAATATAGCTGATGAAGC+CGG - chr8_4:20196799-20196818 Msa1318240:intron 40.0%
AATGAGAATTGCTGAAGCAC+CGG + chr8_4:20196821-20196840 None:intergenic 40.0%
TTATGCTTCCACAAGATGCT+GGG - chr8_4:20197123-20197142 Msa1318240:intron 40.0%
AAGTTTAACCCAGCATCTTG+TGG + chr8_4:20197134-20197153 None:intergenic 40.0%
ACAAGATGCTGGGTTAAACT+TGG - chr8_4:20197133-20197152 Msa1318240:intron 40.0%
CGAGAAAGTTGAGATACCTA+TGG + chr8_4:20197180-20197199 None:intergenic 40.0%
!!! ATGTTGCGGAAGTGTTTTTG+TGG - chr8_4:20197349-20197368 Msa1318240:intron 40.0%
!!! GGAAGTGTTTTTGTGGCTTA+TGG - chr8_4:20197356-20197375 Msa1318240:intron 40.0%
! TTTTTGTGGCTTATGGCTGT+TGG - chr8_4:20197363-20197382 Msa1318240:intron 40.0%
! TGAGCAGGAGAAGCTTTTAA+AGG - chr8_4:20197440-20197459 Msa1318240:intron 40.0%
GAATGAATGCAATAATCGCG+AGG - chr8_4:20197517-20197536 Msa1318240:intron 40.0%
!!! CTGGTGGTTCTTTTTTGCAT+TGG - chr8_4:20197823-20197842 Msa1318240:CDS 40.0%
!!! GTGGTTCTTTTTTGCATTGG+AGG - chr8_4:20197826-20197845 Msa1318240:CDS 40.0%
AGCAAGTGTCAGATATGGAA+CGG + chr8_4:20198121-20198140 None:intergenic 40.0%
GTAACAGCAAGTGTCAGATA+TGG + chr8_4:20198126-20198145 None:intergenic 40.0%
CACTGCAAATACTATGCAGA+AGG + chr8_4:20198151-20198170 None:intergenic 40.0%
CTTCTGCATAGTATTTGCAG+TGG - chr8_4:20198149-20198168 Msa1318240:intron 40.0%
GCATAGTATTTGCAGTGGTT+TGG - chr8_4:20198154-20198173 Msa1318240:intron 40.0%
TGTTCGCATACCAAATCTCA+AGG - chr8_4:20198354-20198373 Msa1318240:intron 40.0%
CCGACAAAATGTTGATGTGA+TGG - chr8_4:20198473-20198492 Msa1318240:CDS 40.0%
CTTCTTTCTTGGTATCAGGT+TGG - chr8_4:20198546-20198565 Msa1318240:CDS 40.0%
TACCACGTTTGTTTGATCCT+TGG - chr8_4:20198826-20198845 Msa1318240:CDS 40.0%
ACCACGTTTGTTTGATCCTT+GGG - chr8_4:20198827-20198846 Msa1318240:CDS 40.0%
!! GGTTACAGCATCATTGGTTT+CGG - chr8_4:20198852-20198871 Msa1318240:CDS 40.0%
!! GTTACAGCATCATTGGTTTC+GGG - chr8_4:20198853-20198872 Msa1318240:CDS 40.0%
!! TTACAGCATCATTGGTTTCG+GGG - chr8_4:20198854-20198873 Msa1318240:CDS 40.0%
TTTCGGGGACATTATCTTAC+CGG - chr8_4:20198869-20198888 Msa1318240:CDS 40.0%
GAAAATGCTACTACAAGTCC+CGG + chr8_4:20198891-20198910 None:intergenic 40.0%
! AGTAGCATTTTCACTGAGGT+TGG - chr8_4:20198899-20198918 Msa1318240:CDS 40.0%
GAGAGCTTATGTCGTGTTTA+CGG + chr8_4:20199026-20199045 None:intergenic 40.0%
GGTATGATACACATGCTTTG+GGG - chr8_4:20199376-20199395 Msa1318240:intron 40.0%
! GTCGCTTTAAACTTGATGGA+TGG - chr8_4:20199683-20199702 Msa1318240:intron 40.0%
GGTTGAACTTAACCATGCAA+AGG + chr8_4:20199858-20199877 None:intergenic 40.0%
! TTTGTCCGGAAGTATACTTC+TGG - chr8_4:20200127-20200146 Msa1318240:CDS 40.0%
ACTTCCGAACTAACTATAGG+GGG - chr8_4:20200180-20200199 Msa1318240:intron 40.0%
TCATGCAGCGTGTTTATTTC+GGG + chr8_4:20200220-20200239 None:intergenic 40.0%
GTCATGCAGCGTGTTTATTT+CGG + chr8_4:20200221-20200240 None:intergenic 40.0%
ATGCTATGTCATGGTCACAT+GGG + chr8_4:20200451-20200470 None:intergenic 40.0%
TATGCTATGTCATGGTCACA+TGG + chr8_4:20200452-20200471 None:intergenic 40.0%
CTTCTTTCCCAACGACAAAA+AGG + chr8_4:20200548-20200567 None:intergenic 40.0%
! GAGGCGATCTCAAGATTTTA+TGG - chr8_4:20200569-20200588 Msa1318240:intron 40.0%
ATATGAGGACAATGCCTTTC+TGG + chr8_4:20200607-20200626 None:intergenic 40.0%
!! CTTCTTCTGAGATAGCAAGT+TGG - chr8_4:20200853-20200872 Msa1318240:CDS 40.0%
GGATTATGAGAAGACTCTCA+TGG + chr8_4:20200928-20200947 None:intergenic 40.0%
!! GTGAGGTCATTTTGCTTTAC+AGG + chr8_4:20200955-20200974 None:intergenic 40.0%
! CTTTTGAATCTTCTTCCGTG+AGG + chr8_4:20200972-20200991 None:intergenic 40.0%
CACGGAAGAAGATTCAAAAG+AGG - chr8_4:20200972-20200991 Msa1318240:exon 40.0%
GTTAGGTCAAAGTCCCAACT+TGG - chr8_4:20196434-20196453 Msa1318240:intron 45.0%
CCACACCATCAATCCAAGTT+GGG + chr8_4:20196450-20196469 None:intergenic 45.0%
TCCACACCATCAATCCAAGT+TGG + chr8_4:20196451-20196470 None:intergenic 45.0%
GTGGAAAACGCCGAATATGT+TGG - chr8_4:20196466-20196485 Msa1318240:intron 45.0%
! TCTTGTGGAAGCATAACAGC+AGG + chr8_4:20197119-20197138 None:intergenic 45.0%
GTTATGCTTCCACAAGATGC+TGG - chr8_4:20197122-20197141 Msa1318240:intron 45.0%
ATACTCTCCACTTCGTCCAT+TGG - chr8_4:20197323-20197342 Msa1318240:intron 45.0%
ACATCAACCAATGGACGAAG+TGG + chr8_4:20197333-20197352 None:intergenic 45.0%
! TCGTCCATTGGTTGATGTTG+CGG - chr8_4:20197335-20197354 Msa1318240:intron 45.0%
ACTTCCGCAACATCAACCAA+TGG + chr8_4:20197342-20197361 None:intergenic 45.0%
! GTGCTTCTTATTGGTCTGCT+TGG - chr8_4:20197397-20197416 Msa1318240:intron 45.0%
! CGTGCTTGCTTCTTGTTTCT+TGG - chr8_4:20197759-20197778 Msa1318240:CDS 45.0%
! CTGGTTTCTTGAAGTTCTGG+TGG - chr8_4:20197807-20197826 Msa1318240:CDS 45.0%
! GGGTCTACAAACTTGTTTGG+CGG - chr8_4:20197939-20197958 Msa1318240:intron 45.0%
GTTTGGCGGCTCTATTATCA+TGG - chr8_4:20197953-20197972 Msa1318240:intron 45.0%
TATGGAACGGCTCCAAAGAA+CGG + chr8_4:20198108-20198127 None:intergenic 45.0%
! AGTATTTGCAGTGGTTTGGG+CGG - chr8_4:20198158-20198177 Msa1318240:intron 45.0%
AACGACAAGCATCATATGCG+TGG - chr8_4:20198184-20198203 Msa1318240:intron 45.0%
CAAGCATCATATGCGTGGAT+TGG - chr8_4:20198189-20198208 Msa1318240:intron 45.0%
! TACTGCCCTAAGGTTGACTT+TGG + chr8_4:20198387-20198406 None:intergenic 45.0%
AATGCAGAGATACTGCCCTA+AGG + chr8_4:20198397-20198416 None:intergenic 45.0%
GGGTGTTCGTTTCTAAATGG+TGG - chr8_4:20198610-20198629 Msa1318240:intron 45.0%
! TCATGAGAGCGTGATGATAG+TGG - chr8_4:20198635-20198654 Msa1318240:intron 45.0%
! GTGTGACATTTTCTCTGCAC+AGG - chr8_4:20198752-20198771 Msa1318240:intron 45.0%
! TTTTCTCTGCACAGGTAGCT+CGG - chr8_4:20198760-20198779 Msa1318240:intron 45.0%
GGTGATAAGAGTGGAGAAGA+CGG - chr8_4:20198783-20198802 Msa1318240:CDS 45.0%
! CGTGGTAACTTGAGAAGCAT+GGG + chr8_4:20198813-20198832 None:intergenic 45.0%
ACGTGGTAACTTGAGAAGCA+TGG + chr8_4:20198814-20198833 None:intergenic 45.0%
CCACGTTTGTTTGATCCTTG+GGG - chr8_4:20198828-20198847 Msa1318240:CDS 45.0%
TTCGGGGACATTATCTTACC+GGG - chr8_4:20198870-20198889 Msa1318240:CDS 45.0%
GCAATGACTGCTTATGGTCT+AGG - chr8_4:20199355-20199374 Msa1318240:intron 45.0%
CTATATAGAGCAAAGCTGGC+TGG + chr8_4:20199715-20199734 None:intergenic 45.0%
GGGACTATATAGAGCAAAGC+TGG + chr8_4:20199719-20199738 None:intergenic 45.0%
! TGCGCTCTATTGGTTGTTCA+AGG - chr8_4:20199830-20199849 Msa1318240:CDS 45.0%
! TTGTTCAAGGTGCCTTTGCA+TGG - chr8_4:20199843-20199862 Msa1318240:CDS 45.0%
! TCCGGAAGTATACTTCTGGA+GGG - chr8_4:20200131-20200150 Msa1318240:CDS 45.0%
! CTCTAGCTCATTCAACTCTC+AGG + chr8_4:20200243-20200262 None:intergenic 45.0%
TTGTCGTTGGGAAAGAAGAG+AGG - chr8_4:20200550-20200569 Msa1318240:intron 45.0%
!! CTTCTGAGATAGCAAGTTGG+AGG - chr8_4:20200856-20200875 Msa1318240:CDS 45.0%
AGAAGACTCTCATGGAAGCA+AGG + chr8_4:20200920-20200939 None:intergenic 45.0%
!!! TTTTTTTTTTTATATTTGTT+TGG + chr8_4:20195571-20195590 None:intergenic 5.0%
TTAGGAGAAGGAAGTGACGG+TGG + chr8_4:20195519-20195538 None:intergenic 50.0%
!!! GGTGTGTCTTTGGTTTTGGC+TGG - chr8_4:20195707-20195726 Msa1318240:three_prime_UTR 50.0%
! TTCTCACAACCAGGCCTTGT+AGG + chr8_4:20195761-20195780 None:intergenic 50.0%
!! CCCAACTTGGATTGATGGTG+TGG - chr8_4:20196447-20196466 Msa1318240:intron 50.0%
AACGCCGAATATGTTGGCGT+CGG - chr8_4:20196472-20196491 Msa1318240:intron 50.0%
! TGCACCGACGCCAACATATT+CGG + chr8_4:20196479-20196498 None:intergenic 50.0%
!! GGCTTGCTACAACAATCAGG+AGG + chr8_4:20196568-20196587 None:intergenic 50.0%
!! GAGATCATTTTGGTGCACCG+AGG - chr8_4:20196754-20196773 Msa1318240:intron 50.0%
CTGCTCAATAGCAGCTTCTC+TGG + chr8_4:20197427-20197446 None:intergenic 50.0%
CAGAGAAGCTGCTATTGAGC+AGG - chr8_4:20197425-20197444 Msa1318240:intron 50.0%
!! GCAGAAAGTGTTGGTTCTCG+TGG - chr8_4:20197697-20197716 Msa1318240:intron 50.0%
!! TGTTGGTTCTCGTGGTTACG+TGG - chr8_4:20197705-20197724 Msa1318240:intron 50.0%
TTTCTCTGCACAGGTAGCTC+GGG - chr8_4:20198761-20198780 Msa1318240:intron 50.0%
CCCCAAGGATCAAACAAACG+TGG + chr8_4:20198831-20198850 None:intergenic 50.0%
CGTTTGTTTGATCCTTGGGG+TGG - chr8_4:20198831-20198850 Msa1318240:CDS 50.0%
ATGATGCTGTAACCACCCCA+AGG + chr8_4:20198846-20198865 None:intergenic 50.0%
TGGGGTGGTTACAGCATCAT+TGG - chr8_4:20198846-20198865 Msa1318240:CDS 50.0%
ACACGAAATATCCAGCTCGG+AGG + chr8_4:20199333-20199352 None:intergenic 50.0%
TCCGAGCTGGATATTTCGTG+TGG - chr8_4:20199332-20199351 Msa1318240:intron 50.0%
CCCACACGAAATATCCAGCT+CGG + chr8_4:20199336-20199355 None:intergenic 50.0%
CCGAGCTGGATATTTCGTGT+GGG - chr8_4:20199333-20199352 Msa1318240:intron 50.0%
GTGTGGGCAATGACTGCTTA+TGG - chr8_4:20199349-20199368 Msa1318240:intron 50.0%
TGGGAAAGGAGGAGAAGTTC+CGG + chr8_4:20200044-20200063 None:intergenic 50.0%
! GTCCGGAAGTATACTTCTGG+AGG - chr8_4:20200130-20200149 Msa1318240:CDS 50.0%
! GCCCTCCAGAAGTATACTTC+CGG + chr8_4:20200135-20200154 None:intergenic 50.0%
TCCGAACTAACTATAGGGGG+TGG - chr8_4:20200183-20200202 Msa1318240:intron 50.0%
CCCACCCCCTATAGTTAGTT+CGG + chr8_4:20200187-20200206 None:intergenic 50.0%
CCGAACTAACTATAGGGGGT+GGG - chr8_4:20200184-20200203 Msa1318240:intron 50.0%
TCCATGCAGCTGACATCTCT+TGG - chr8_4:20200396-20200415 Msa1318240:intron 50.0%
TCCAAGAGATGTCAGCTGCA+TGG + chr8_4:20200400-20200419 None:intergenic 50.0%
! TGCAGGCACCTTTTTGTCGT+TGG - chr8_4:20200537-20200556 Msa1318240:intron 50.0%
! GCAGGCACCTTTTTGTCGTT+GGG - chr8_4:20200538-20200557 Msa1318240:intron 50.0%
GGACAAGAGGAGAACCAGAA+AGG - chr8_4:20200590-20200609 Msa1318240:intron 50.0%
GGAGAGTGATAGCAACCGTT+AGG - chr8_4:20200699-20200718 Msa1318240:intron 50.0%
GATGTTGCTCCTACAAGGCC+TGG - chr8_4:20195749-20195768 Msa1318240:three_prime_UTR 55.0%
!! GTTGGCGTCGGTGCAAGATT+TGG - chr8_4:20196484-20196503 Msa1318240:intron 55.0%
TTCTCTGCACAGGTAGCTCG+GGG - chr8_4:20198762-20198781 Msa1318240:intron 55.0%
GTAGCTCGGGGTGATAAGAG+TGG - chr8_4:20198774-20198793 Msa1318240:intron 55.0%
GCAAAGAAGAACCTCCGAGC+TGG - chr8_4:20199319-20199338 Msa1318240:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 20195421 20201216 20195421 ID=Msa1318240;Name=Msa1318240
chr8_4 mRNA 20195421 20201216 20195421 ID=Msa1318240-mRNA-1;Parent=Msa1318240;Name=Msa1318240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=232|1|1|1|0.84|0.85|14|556|541
chr8_4 exon 20195421 20196095 20195421 ID=Msa1318240-mRNA-1:exon:7424;Parent=Msa1318240-mRNA-1
chr8_4 exon 20196888 20196971 20196888 ID=Msa1318240-mRNA-1:exon:7423;Parent=Msa1318240-mRNA-1
chr8_4 exon 20197261 20197331 20197261 ID=Msa1318240-mRNA-1:exon:7422;Parent=Msa1318240-mRNA-1
chr8_4 exon 20197721 20197863 20197721 ID=Msa1318240-mRNA-1:exon:7421;Parent=Msa1318240-mRNA-1
chr8_4 exon 20197981 20198073 20197981 ID=Msa1318240-mRNA-1:exon:7420;Parent=Msa1318240-mRNA-1
chr8_4 exon 20198262 20198315 20198262 ID=Msa1318240-mRNA-1:exon:7419;Parent=Msa1318240-mRNA-1
chr8_4 exon 20198413 20198575 20198413 ID=Msa1318240-mRNA-1:exon:7418;Parent=Msa1318240-mRNA-1
chr8_4 exon 20198663 20198697 20198663 ID=Msa1318240-mRNA-1:exon:7417;Parent=Msa1318240-mRNA-1
chr8_4 exon 20198782 20198961 20198782 ID=Msa1318240-mRNA-1:exon:7416;Parent=Msa1318240-mRNA-1
chr8_4 exon 20199176 20199327 20199176 ID=Msa1318240-mRNA-1:exon:7415;Parent=Msa1318240-mRNA-1
chr8_4 exon 20199455 20199574 20199455 ID=Msa1318240-mRNA-1:exon:7414;Parent=Msa1318240-mRNA-1
chr8_4 exon 20199781 20199892 20199781 ID=Msa1318240-mRNA-1:exon:7413;Parent=Msa1318240-mRNA-1
chr8_4 exon 20200040 20200198 20200040 ID=Msa1318240-mRNA-1:exon:7412;Parent=Msa1318240-mRNA-1
chr8_4 exon 20200844 20201216 20200844 ID=Msa1318240-mRNA-1:exon:7411;Parent=Msa1318240-mRNA-1
chr8_4 five_prime_UTR 20200985 20201216 20200985 ID=Msa1318240-mRNA-1:five_prime_utr;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20200844 20200984 20200844 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20200040 20200198 20200040 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20199781 20199892 20199781 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20199455 20199574 20199455 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20199176 20199327 20199176 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20198782 20198961 20198782 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20198663 20198697 20198663 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20198413 20198575 20198413 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20198262 20198315 20198262 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20197981 20198073 20197981 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20197721 20197863 20197721 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20197261 20197331 20197261 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20196888 20196971 20196888 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 CDS 20195977 20196095 20195977 ID=Msa1318240-mRNA-1:cds;Parent=Msa1318240-mRNA-1
chr8_4 three_prime_UTR 20195421 20195976 20195421 ID=Msa1318240-mRNA-1:three_prime_utr;Parent=Msa1318240-mRNA-1
Gene Sequence

>Msa1318240

ATGGTTTCATTGGGAGTTATATATAGTAATATTGTAGTATATGTGTTTCTGTTTGGTGTGTCTTTGGTTTTGGCTGGTGATATAGTTCATCATGATGATGTTGCTCCTACAAGGCCTGGTTGTGAGAATAACTTTGTTCTGGTCAAAGTCCCAACTTGGATTGATGGTGTGGAAAACGCCGAATATGTTGGCGTCGGTGCAAGATTTGGTCCTACATTGGAATCAAAAGAAAAACATGCCAATCATACTAGAGTTGTCATGGCTGATCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTCACCAATGAGATCATTTTGGTGCACCGAGGAAAATGTAGTTTCACAACCAAGGCAAATATAGCTGATGAAGCCGGTGCTTCAGCAATTCTCATTATAAATTATCGTACAGAACTTTTCAAGATGGTTTGTGAGGAAAATGAAACTGATGTTGATATTGGAATACCTGCTGTTATGCTTCCACAAGATGCTGGGTTAAACTTGGAAAGACACATACAAAATAACTCCATAGTGTCCATACAGTTATACTCTCCACTTCGTCCATTGGTTGATGTTGCGGAAGTGTTTTTGTGGCTTATGGCTGTTGGTACCATTTTATGTGCTTCTTATTGGTCTGCTTGGACTGCCAGAGAAGCTGCTATTGAGCAGGAGAAGCTTTTAAAGGATGCTTCAGATGAATATGTTGCAGAAAGTGTTGGTTCTCGTGGTTACGTGGAAATCAGTACTACAGCAGCAATTTTATTTGTCGTGCTTGCTTCTTGTTTCTTGGTTATGCTGTACAAATTAATGTCATTCTGGTTTCTTGAAGTTCTGGTGGTTCTTTTTTGCATTGGAGGAATAGAGGGTCTACAAACTTGTTTGGCGGCTCTATTATCATGTTTCAGATGGTTTCAATATCCTGCACAAACATATGTCAAGATACCGTTCTTTGGAGCCGTTCCATATCTGACACTTGCTGTTACTCCCTTCTGCATAGTATTTGCAGTGGTTTGGGCGGTTAAACGACAAGCATCATATGCGTGGATTGGTCAAGATATTCTTGGTATTGCGTTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTCAAGGTTGGGACTGTTCTTCTCAGTTGTGCTTTCTTATATGACATCTTATGGGTGTTCGTTTCTAAATGGTGGTTTCATGAGAGCGTGATGATAGTGGTAGCTCGGGGTGATAAGAGTGGAGAAGACGGTATTCCCATGCTTCTCAAGTTACCACGTTTGTTTGATCCTTGGGGTGGTTACAGCATCATTGGTTTCGGGGACATTATCTTACCGGGACTTGTAGTAGCATTTTCACTGAGGTATGATTGGTTGGCAAAGAAGAACCTCCGAGCTGGATATTTCGTGTGGGCAATGACTGCTTATGGTCTAGGTCTCCTCATCACATATGTCGCTTTAAACTTGATGGATGGACATGGCCAGCCAGCTTTGCTCTATATAGTCCCATTTACACTTGGCACCTTTTTGTCGTTGGGAAAGAAGAGAGGCGATCTCAAGATTTTATGGACAAGAGGAGAACCAGAAAGGCATTGTCCTCATATTGAAGAAGTTAACCAATCAATTAACCAACATTGA
Protein sequence

>Msa1318240

MVSLGVIYSNIVVYVFLFGVSLVLAGDIVHHDDVAPTRPGCENNFVLVKVPTWIDGVENAEYVGVGARFGPTLESKEKHANHTRVVMADPPDCCSKPKNKLTNEIILVHRGKCSFTTKANIADEAGASAILIINYRTELFKMVCEENETDVDIGIPAVMLPQDAGLNLERHIQNNSIVSIQLYSPLRPLVDVAEVFLWLMAVGTILCASYWSAWTAREAAIEQEKLLKDASDEYVAESVGSRGYVEISTTAAILFVVLASCFLVMLYKLMSFWFLEVLVVLFCIGGIEGLQTCLAALLSCFRWFQYPAQTYVKIPFFGAVPYLTLAVTPFCIVFAVVWAVKRQASYAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDILWVFVSKWWFHESVMIVVARGDKSGEDGIPMLLKLPRLFDPWGGYSIIGFGDIILPGLVVAFSLRYDWLAKKNLRAGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGDLKILWTRGEPERHCPHIEEVNQSINQH*