Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029890 | sp|Q9SS87|SEOB_ARATH | 28.672 | 708 | 351 | 24 | 23 | 587 | 34 | 730 | 7.58e-77 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002410 | Msa0029890 | 0.818176 | 2.247307e-52 | -8.615850e-47 |
| Msa0007080 | Msa0029890 | 0.802947 | 4.404546e-49 | -8.615850e-47 |
| Msa0012060 | Msa0029890 | 0.820497 | 6.647044e-53 | -8.615850e-47 |
| Msa0017510 | Msa0029890 | 0.810899 | 9.165069e-51 | -8.615850e-47 |
| Msa0029880 | Msa0029890 | 0.949701 | 7.460390e-108 | -8.615850e-47 |
| Msa0029890 | Msa0029900 | 0.874775 | 5.188310e-68 | -8.615850e-47 |
| Msa0029890 | Msa0029910 | 0.819738 | 9.918681e-53 | -8.615850e-47 |
| Msa0029890 | Msa0077120 | 0.815251 | 1.017361e-51 | -8.615850e-47 |
| Msa0029890 | Msa0077130 | 0.855189 | 7.453431e-62 | -8.615850e-47 |
| Msa0029890 | Msa0077140 | 0.955220 | 5.009429e-113 | -8.615850e-47 |
| Msa0029890 | Msa0101810 | -0.805530 | 1.276921e-49 | -8.615850e-47 |
| Msa0029890 | Msa0123300 | 0.810157 | 1.325379e-50 | -8.615850e-47 |
| Msa0029890 | Msa0125090 | 0.893326 | 6.975213e-75 | -8.615850e-47 |
| Msa0029890 | Msa0125100 | 0.907809 | 3.389545e-81 | -8.615850e-47 |
| Msa0029890 | Msa0125110 | 0.819551 | 1.094383e-52 | -8.615850e-47 |
| Msa0029890 | Msa0140780 | 0.800359 | 1.495775e-48 | -8.615850e-47 |
| Msa0029890 | Msa0141230 | 0.809316 | 2.009886e-50 | -8.615850e-47 |
| Msa0029890 | Msa0142200 | 0.807292 | 5.428302e-50 | -8.615850e-47 |
| Msa0029890 | Msa0157290 | 0.810075 | 1.380230e-50 | -8.615850e-47 |
| Msa0029890 | Msa0169860 | 0.926829 | 2.734085e-91 | -8.615850e-47 |
| Msa0029890 | Msa0169870 | 0.972495 | 7.359916e-135 | -8.615850e-47 |
| Msa0029890 | Msa0169920 | 0.836208 | 1.070936e-56 | -8.615850e-47 |
| Msa0029890 | Msa0170090 | 0.875806 | 2.304106e-68 | -8.615850e-47 |
| Msa0029890 | Msa0200260 | 0.800333 | 1.514042e-48 | -8.615850e-47 |
| Msa0029890 | Msa0213040 | 0.833189 | 6.151413e-56 | -8.615850e-47 |
| Msa0029890 | Msa0227470 | 0.814033 | 1.892992e-51 | -8.615850e-47 |
| Msa0029890 | Msa0237310 | 0.816918 | 4.316402e-52 | -8.615850e-47 |
| Msa0029890 | Msa0243100 | 0.820751 | 5.812974e-53 | -8.615850e-47 |
| Msa0029890 | Msa0253340 | 0.830063 | 3.626703e-55 | -8.615850e-47 |
| Msa0029890 | Msa0260810 | 0.804215 | 2.403633e-49 | -8.615850e-47 |
| Msa0029890 | Msa0272730 | 0.810542 | 1.094531e-50 | -8.615850e-47 |
| Msa0029890 | Msa0274730 | 0.819248 | 1.283218e-52 | -8.615850e-47 |
| Msa0029890 | Msa0287650 | 0.819720 | 1.001692e-52 | -8.615850e-47 |
| Msa0029890 | Msa0292170 | 0.808666 | 2.768643e-50 | -8.615850e-47 |
| Msa0029890 | Msa0306210 | -0.800994 | 1.109953e-48 | -8.615850e-47 |
| Msa0029890 | Msa0315530 | 0.817610 | 3.016012e-52 | -8.615850e-47 |
| Msa0029890 | Msa0326520 | 0.804934 | 1.702241e-49 | -8.615850e-47 |
| Msa0029890 | Msa0330390 | 0.818114 | 2.321154e-52 | -8.615850e-47 |
| Msa0029890 | Msa0338110 | 0.806389 | 8.424518e-50 | -8.615850e-47 |
| Msa0029890 | Msa0340450 | 0.801328 | 9.483806e-49 | -8.615850e-47 |
| Msa0029890 | Msa0344690 | -0.800239 | 1.582329e-48 | -8.615850e-47 |
| Msa0029890 | Msa0362680 | 0.807420 | 5.098913e-50 | -8.615850e-47 |
| Msa0029890 | Msa0395790 | 0.815809 | 7.642130e-52 | -8.615850e-47 |
| Msa0029890 | Msa0439970 | 0.821964 | 3.050938e-53 | -8.615850e-47 |
| Msa0029890 | Msa0452920 | 0.810271 | 1.252152e-50 | -8.615850e-47 |
| Msa0029890 | Msa0469940 | -0.802254 | 6.121042e-49 | -8.615850e-47 |
| Msa0029890 | Msa0483650 | 0.809296 | 2.029290e-50 | -8.615850e-47 |
| Msa0029890 | Msa0484780 | 0.802120 | 6.521964e-49 | -8.615850e-47 |
| Msa0029890 | Msa0512230 | 0.804540 | 2.056712e-49 | -8.615850e-47 |
| Msa0029890 | Msa0523460 | 0.836617 | 8.425731e-57 | -8.615850e-47 |
| Msa0029890 | Msa0526940 | 0.808498 | 3.007111e-50 | -8.615850e-47 |
| Msa0029890 | Msa0546790 | 0.807006 | 6.240332e-50 | -8.615850e-47 |
| Msa0029890 | Msa0555020 | 0.825425 | 4.721883e-54 | -8.615850e-47 |
| Msa0029890 | Msa0567020 | 0.801517 | 8.675720e-49 | -8.615850e-47 |
| Msa0029890 | Msa0586910 | 0.812648 | 3.815056e-51 | -8.615850e-47 |
| Msa0029890 | Msa0602250 | 0.808726 | 2.688088e-50 | -8.615850e-47 |
| Msa0029890 | Msa0608620 | 0.814115 | 1.816154e-51 | -8.615850e-47 |
| Msa0029890 | Msa0626280 | 0.818653 | 1.751900e-52 | -8.615850e-47 |
| Msa0029890 | Msa0641360 | 0.804534 | 2.063358e-49 | -8.615850e-47 |
| Msa0029890 | Msa0648880 | 0.827127 | 1.857656e-54 | -8.615850e-47 |
| Msa0029890 | Msa0657610 | 0.821529 | 3.847766e-53 | -8.615850e-47 |
| Msa0029890 | Msa0657970 | 0.801260 | 9.792895e-49 | -8.615850e-47 |
| Msa0029890 | Msa0658570 | 0.818228 | 2.187494e-52 | -8.615850e-47 |
| Msa0029890 | Msa0664850 | 0.816834 | 4.507699e-52 | -8.615850e-47 |
| Msa0029890 | Msa0667050 | 0.801001 | 1.106002e-48 | -8.615850e-47 |
| Msa0029890 | Msa0669440 | 0.804118 | 2.518999e-49 | -8.615850e-47 |
| Msa0029890 | Msa0682620 | 0.814318 | 1.638027e-51 | -8.615850e-47 |
| Msa0029890 | Msa0688070 | 0.815040 | 1.133141e-51 | -8.615850e-47 |
| Msa0029890 | Msa0688770 | 0.811421 | 7.062412e-51 | -8.615850e-47 |
| Msa0029890 | Msa0691380 | 0.809776 | 1.601208e-50 | -8.615850e-47 |
| Msa0029890 | Msa0696740 | 0.809237 | 2.089492e-50 | -8.615850e-47 |
| Msa0029890 | Msa0696770 | 0.808232 | 3.426806e-50 | -8.615850e-47 |
| Msa0029890 | Msa0702350 | 0.818591 | 1.809452e-52 | -8.615850e-47 |
| Msa0029890 | Msa0702680 | 0.818976 | 1.479387e-52 | -8.615850e-47 |
| Msa0029890 | Msa0703490 | 0.800823 | 1.202615e-48 | -8.615850e-47 |
| Msa0029890 | Msa0722780 | 0.808628 | 2.820306e-50 | -8.615850e-47 |
| Msa0029890 | Msa0722850 | 0.813431 | 2.568980e-51 | -8.615850e-47 |
| Msa0029890 | Msa0723000 | 0.827693 | 1.358511e-54 | -8.615850e-47 |
| Msa0029890 | Msa0723050 | 0.821821 | 3.293586e-53 | -8.615850e-47 |
| Msa0029890 | Msa0730270 | 0.821001 | 5.090846e-53 | -8.615850e-47 |
| Msa0029890 | Msa0802860 | 0.808078 | 3.695031e-50 | -8.615850e-47 |
| Msa0029890 | Msa0843220 | 0.804049 | 2.603209e-49 | -8.615850e-47 |
| Msa0029890 | Msa0867890 | 0.802672 | 5.019178e-49 | -8.615850e-47 |
| Msa0029890 | Msa0868020 | 0.808065 | 3.719970e-50 | -8.615850e-47 |
| Msa0029890 | Msa0880140 | 0.806723 | 7.161821e-50 | -8.615850e-47 |
| Msa0029890 | Msa0883060 | 0.835874 | 1.301531e-56 | -8.615850e-47 |
| Msa0029890 | Msa0910430 | 0.824552 | 7.589607e-54 | -8.615850e-47 |
| Msa0029890 | Msa0923010 | 0.801563 | 8.488313e-49 | -8.615850e-47 |
| Msa0029890 | Msa0948290 | 0.808826 | 2.559495e-50 | -8.615850e-47 |
| Msa0029890 | Msa0964840 | 0.816384 | 5.685232e-52 | -8.615850e-47 |
| Msa0029890 | Msa0977180 | -0.803993 | 2.673656e-49 | -8.615850e-47 |
| Msa0029890 | Msa1030970 | 0.814631 | 1.396590e-51 | -8.615850e-47 |
| Msa0029890 | Msa1068200 | -0.809316 | 2.009861e-50 | -8.615850e-47 |
| Msa0029890 | Msa1075220 | -0.812994 | 3.202853e-51 | -8.615850e-47 |
| Msa0029890 | Msa1077150 | 0.805898 | 1.068871e-49 | -8.615850e-47 |
| Msa0029890 | Msa1080160 | 0.803393 | 3.561220e-49 | -8.615850e-47 |
| Msa0029890 | Msa1082500 | 0.809074 | 2.264476e-50 | -8.615850e-47 |
| Msa0029890 | Msa1098560 | 0.815920 | 7.220258e-52 | -8.615850e-47 |
| Msa0029890 | Msa1101140 | 0.807324 | 5.342840e-50 | -8.615850e-47 |
| Msa0029890 | Msa1124540 | -0.808513 | 2.985448e-50 | -8.615850e-47 |
| Msa0029890 | Msa1127770 | 0.811967 | 5.371509e-51 | -8.615850e-47 |
| Msa0029890 | Msa1162550 | -0.822828 | 1.922292e-53 | -8.615850e-47 |
| Msa0029890 | Msa1214880 | 0.812940 | 3.291842e-51 | -8.615850e-47 |
| Msa0029890 | Msa1224480 | 0.814857 | 1.244233e-51 | -8.615850e-47 |
| Msa0029890 | Msa1242220 | 0.836343 | 9.895841e-57 | -8.615850e-47 |
| Msa0029890 | Msa1242230 | 0.817399 | 3.364465e-52 | -8.615850e-47 |
| Msa0029890 | Msa1242240 | 0.805524 | 1.280499e-49 | -8.615850e-47 |
| Msa0029890 | Msa1267610 | 0.802950 | 4.398623e-49 | -8.615850e-47 |
| Msa0029890 | Msa1271300 | 0.814709 | 1.342186e-51 | -8.615850e-47 |
| Msa0029890 | Msa1278840 | 0.809853 | 1.541268e-50 | -8.615850e-47 |
| Msa0029890 | Msa1283860 | 0.812792 | 3.547795e-51 | -8.615850e-47 |
| Msa0029890 | Msa1284260 | 0.811123 | 8.195307e-51 | -8.615850e-47 |
| Msa0029890 | Msa1287440 | 0.820661 | 6.096317e-53 | -8.615850e-47 |
| Msa0029890 | Msa1318240 | 0.809812 | 1.572430e-50 | -8.615850e-47 |
| Msa0029890 | Msa1322860 | 0.833712 | 4.556174e-56 | -8.615850e-47 |
| Msa0029890 | Msa1322890 | 0.848278 | 6.786774e-60 | -8.615850e-47 |
| Msa0029890 | Msa1327050 | 0.825246 | 5.205032e-54 | -8.615850e-47 |
| Msa0029890 | Msa1341570 | 0.805742 | 1.152483e-49 | -8.615850e-47 |
| Msa0029890 | Msa1376890 | 0.808518 | 2.978045e-50 | -8.615850e-47 |
| Msa0029890 | Msa1381940 | 0.807821 | 4.190810e-50 | -8.615850e-47 |
| Msa0029890 | Msa1384350 | 0.801691 | 7.990828e-49 | -8.615850e-47 |
| Msa0029890 | Msa1392260 | 0.808087 | 3.679052e-50 | -8.615850e-47 |
| Msa0029890 | Msa1393410 | 0.815391 | 9.468557e-52 | -8.615850e-47 |
| Msa0029890 | Msa1394540 | 0.803269 | 3.777724e-49 | -8.615850e-47 |
| Msa0029890 | Msa1435420 | 0.809791 | 1.589037e-50 | -8.615850e-47 |
| Msa0029890 | Msa1438250 | 0.809887 | 1.515012e-50 | -8.615850e-47 |
| Msa0029890 | Msa1451620 | -0.806485 | 8.041701e-50 | -8.615850e-47 |
| Msa0029890 | Msa1457430 | 0.809434 | 1.895486e-50 | -8.615850e-47 |
| Msa0029890 | Msa1460890 | 0.808119 | 3.622541e-50 | -8.615850e-47 |
| Msa0029890 | Msa1464160 | 0.874813 | 5.036759e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029890 | MtrunA17_Chr1g0186841 | 87.630 | 671 | 6 | 5 | 1 | 594 | 1 | 671 | 0.0 | 1160 |
| Msa0029890 | MtrunA17_Chr1g0186851 | 53.604 | 666 | 228 | 8 | 9 | 594 | 5 | 669 | 0.0 | 702 |
| Msa0029890 | MtrunA17_Chr1g0186861 | 53.086 | 648 | 224 | 8 | 18 | 586 | 17 | 663 | 0.0 | 667 |
| Msa0029890 | MtrunA17_Chr1g0187041 | 51.051 | 666 | 245 | 9 | 1 | 587 | 1 | 664 | 0.0 | 637 |
| Msa0029890 | MtrunA17_Chr1g0186911 | 51.601 | 562 | 194 | 7 | 102 | 586 | 1 | 561 | 0.0 | 558 |
| Msa0029890 | MtrunA17_Chr1g0165791 | 36.472 | 669 | 323 | 17 | 20 | 593 | 24 | 685 | 5.18e-129 | 394 |
| Msa0029890 | MtrunA17_Chr1g0186981 | 32.647 | 680 | 334 | 22 | 6 | 591 | 19 | 668 | 8.36e-87 | 283 |
| Msa0029890 | MtrunA17_Chr1g0186991 | 31.355 | 657 | 338 | 22 | 21 | 585 | 31 | 666 | 7.62e-84 | 275 |
| Msa0029890 | MtrunA17_Chr7g0226571 | 29.265 | 721 | 365 | 20 | 1 | 586 | 1 | 711 | 1.87e-83 | 276 |
| Msa0029890 | MtrunA17_Chr1g0187001 | 31.165 | 661 | 349 | 20 | 13 | 590 | 3 | 640 | 3.93e-82 | 270 |
| Msa0029890 | MtrunA17_Chr8g0381301 | 28.592 | 696 | 355 | 21 | 23 | 585 | 17 | 703 | 6.22e-76 | 255 |
| Msa0029890 | MtrunA17_Chr3g0116601 | 28.161 | 696 | 358 | 20 | 19 | 584 | 21 | 704 | 7.55e-76 | 255 |
| Msa0029890 | MtrunA17_Chr1g0186901 | 62.069 | 87 | 31 | 1 | 18 | 102 | 17 | 103 | 1.46e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029890 | AT3G01680.1 | 28.672 | 708 | 351 | 24 | 23 | 587 | 34 | 730 | 7.71e-78 | 261 |
| Msa0029890 | AT3G01670.1 | 25.251 | 697 | 376 | 18 | 23 | 584 | 134 | 820 | 1.78e-53 | 196 |
| Msa0029890 | AT3G01670.2 | 25.251 | 697 | 376 | 18 | 23 | 584 | 158 | 844 | 3.48e-53 | 195 |
| Msa0029890 | AT1G67790.1 | 22.741 | 321 | 195 | 13 | 303 | 582 | 356 | 664 | 6.44e-20 | 94.4 |
Find 119 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATCATCCATTGTAAA+TGG | 0.156346 | 1_1:+55570337 | None:intergenic |
| TCTGCATTTGCACTTGAATT+TGG | 0.183170 | 1_1:-55573373 | Msa0029890:CDS |
| AAATTCCTGTTGATGTTTAC+TGG | 0.195806 | 1_1:-55573108 | Msa0029890:CDS |
| AAAACCTCGTAAGTCGATTT+TGG | 0.196977 | 1_1:-55569617 | Msa0029890:CDS |
| CACTTGAATTTGGTGAATTC+TGG | 0.203329 | 1_1:-55573363 | Msa0029890:CDS |
| TCTTTATGTTACAACATAAT+TGG | 0.214108 | 1_1:+55569051 | None:intergenic |
| TTCCATTTGATCATGTCTTA+TGG | 0.236485 | 1_1:-55570373 | Msa0029890:CDS |
| AGTAAATTTGATCTAAAATT+TGG | 0.244179 | 1_1:+55574497 | None:intergenic |
| TGGTCATCAGACATGGTTAA+TGG | 0.245357 | 1_1:+55574517 | None:intergenic |
| GTGGTCTTTGGTTCGATACT+TGG | 0.284750 | 1_1:-55569161 | Msa0029890:three_prime_UTR |
| CTTGAAATTCCTATTGTTGC+TGG | 0.287322 | 1_1:-55569321 | Msa0029890:CDS |
| TTACTGGGTCTTGTGGTCTT+TGG | 0.296308 | 1_1:-55569173 | Msa0029890:three_prime_UTR |
| CACAAAGGTTGTTCCTGCTT+TGG | 0.316333 | 1_1:-55573146 | Msa0029890:CDS |
| TATCACTGAGCTTAATAGTT+TGG | 0.318395 | 1_1:-55573233 | Msa0029890:CDS |
| ATGAACAATACAAGATTGTT+TGG | 0.318857 | 1_1:-55570591 | Msa0029890:CDS |
| CAATGCAAATGCAAAACATT+AGG | 0.327316 | 1_1:-55569214 | Msa0029890:exon |
| AATGCAAATGCAAAACATTA+GGG | 0.334812 | 1_1:-55569213 | Msa0029890:exon |
| CACAGTGGTGAACTAAAATT+CGG | 0.342006 | 1_1:+55574244 | None:intergenic |
| AATGTGAGGTGGAATAAAAT+TGG | 0.354807 | 1_1:+55568794 | None:intergenic |
| CTCAGAAGAAATTGACTTCA+AGG | 0.363511 | 1_1:+55574219 | None:intergenic |
| TTTCAGCAAAGCCACAGATT+TGG | 0.367784 | 1_1:+55573306 | None:intergenic |
| GTAACAGTTTCTTAAGCTCT+TGG | 0.377322 | 1_1:+55572600 | None:intergenic |
| GTGGGACATTCAGAACCTTT+TGG | 0.379546 | 1_1:-55569086 | Msa0029890:three_prime_UTR |
| TGCTGCTATTGTTACTCAGT+TGG | 0.382885 | 1_1:-55573071 | Msa0029890:CDS |
| GGTCATCAGACATGGTTAAT+GGG | 0.399280 | 1_1:+55574518 | None:intergenic |
| ATGAAAATCTCCATGGTACT+AGG | 0.402817 | 1_1:+55569264 | None:intergenic |
| GTGAACTAAAATTCGGGATA+AGG | 0.403542 | 1_1:+55574251 | None:intergenic |
| TCAAGTTCATTAATGAAGAA+TGG | 0.407316 | 1_1:-55570462 | Msa0029890:CDS |
| GATCATGTCTTATGGAATCA+AGG | 0.415650 | 1_1:-55570365 | Msa0029890:CDS |
| TTTCATCATCCATTGTAAAT+GGG | 0.417223 | 1_1:+55570338 | None:intergenic |
| CTGTGGCTGAATTTGAGAAA+TGG | 0.418335 | 1_1:-55569431 | Msa0029890:CDS |
| GAATTCAGAAGGACAGGAAC+TGG | 0.428024 | 1_1:-55570312 | Msa0029890:CDS |
| ATGGTCCAGTAAACATCAAC+AGG | 0.429508 | 1_1:+55573103 | None:intergenic |
| GGTAACTTTCCAGCAACAAT+AGG | 0.436825 | 1_1:+55569312 | None:intergenic |
| CAGCAACAATAGGAATTTCA+AGG | 0.438861 | 1_1:+55569322 | None:intergenic |
| GTGTGAAAGCTTGTTCAGTA+TGG | 0.441244 | 1_1:+55573429 | None:intergenic |
| CAAGTTCATTAATGAAGAAT+GGG | 0.444482 | 1_1:-55570461 | Msa0029890:CDS |
| GGATTCCAATCGTCGAAGAA+TGG | 0.446974 | 1_1:-55570570 | Msa0029890:CDS |
| TGCTTGCTCCAAGCTTACTT+TGG | 0.448220 | 1_1:+55574285 | None:intergenic |
| TTGTGTGCAATTTCCTCACT+TGG | 0.452426 | 1_1:+55573463 | None:intergenic |
| TCTCAATCTCACCAGCTGAT+AGG | 0.452782 | 1_1:+55574545 | None:intergenic |
| CTGCAGGCTTTGCTAGGATC+GGG | 0.454271 | 1_1:+55573278 | None:intergenic |
| AAGCAAGAACTTTCGCACTA+TGG | 0.467506 | 1_1:-55572901 | Msa0029890:intron |
| GAATTGCTGCAGGCTTTGCT+AGG | 0.467942 | 1_1:+55573272 | None:intergenic |
| TGTGCAATTTCCTCACTTGG+TGG | 0.473616 | 1_1:+55573466 | None:intergenic |
| TTCCATAAGACATGATCAAA+TGG | 0.476560 | 1_1:+55570371 | None:intergenic |
| AAAGATGTTGTTATCAAGAA+GGG | 0.481066 | 1_1:-55569408 | Msa0029890:CDS |
| TCCATGGTACTAGGACAATC+AGG | 0.486441 | 1_1:+55569273 | None:intergenic |
| ACAAGCTTTCACACTATGAC+TGG | 0.487294 | 1_1:-55573420 | Msa0029890:CDS |
| TCGTTCCATTCTTCGACGAT+TGG | 0.491649 | 1_1:+55570565 | None:intergenic |
| GTTGGATCCATTCTTTGTCA+TGG | 0.491940 | 1_1:+55569733 | None:intergenic |
| TGAACTAAAATTCGGGATAA+GGG | 0.496533 | 1_1:+55574252 | None:intergenic |
| AATAGCAGCAATAGTGATGA+TGG | 0.497646 | 1_1:+55573084 | None:intergenic |
| ACAGGGTACCAAAGTAAGCT+TGG | 0.502353 | 1_1:-55574293 | Msa0029890:intron |
| CTTGAAGTCAATTTCTTCTG+AGG | 0.504447 | 1_1:-55574218 | Msa0029890:intron |
| GAAAGATGTTGTTATCAAGA+AGG | 0.504611 | 1_1:-55569409 | Msa0029890:CDS |
| CTTAAGAGTACCTTTGATGA+TGG | 0.504661 | 1_1:+55574573 | None:intergenic |
| AAATAAGAATTCAGAAGGAC+AGG | 0.505393 | 1_1:-55570318 | Msa0029890:CDS |
| ACGGCGGCCATGACAAAGAA+TGG | 0.505835 | 1_1:-55569740 | Msa0029890:CDS |
| CAGAATGTCGAAAACATAGC+TGG | 0.516066 | 1_1:-55570487 | Msa0029890:CDS |
| CATTTGCATTGGTCTTATTG+TGG | 0.517809 | 1_1:+55569226 | None:intergenic |
| TATTAAGCTCAGTGATAGCT+TGG | 0.519222 | 1_1:+55573239 | None:intergenic |
| TGGCATACTTAGTGAACTGT+TGG | 0.521596 | 1_1:+55569715 | None:intergenic |
| GCTGCAGGCTTTGCTAGGAT+CGG | 0.522772 | 1_1:+55573277 | None:intergenic |
| CAAGGCTTTCCCATTTACAA+TGG | 0.524969 | 1_1:-55570347 | Msa0029890:CDS |
| TCTGTTGTGTTGAGTGGTCA+TGG | 0.529738 | 1_1:-55569471 | Msa0029890:CDS |
| TTTGTGGTGTTTAGTCCTCA+AGG | 0.535506 | 1_1:-55570418 | Msa0029890:CDS |
| TTGTGTTGCACCTTTCCTTG+AGG | 0.539203 | 1_1:+55570403 | None:intergenic |
| TGTTTCTACTCTAGATGTCA+CGG | 0.542607 | 1_1:-55570662 | Msa0029890:CDS |
| CACTTCTTGTGTCACTACAT+CGG | 0.542765 | 1_1:+55569551 | None:intergenic |
| AGCACCACTGTTATTTCAGT+GGG | 0.543302 | 1_1:+55572572 | None:intergenic |
| TGGCGTGGAACATAACCAAA+AGG | 0.543336 | 1_1:+55569071 | None:intergenic |
| GTGGTGTAGTCTTGAAGCGT+TGG | 0.543839 | 1_1:-55568975 | Msa0029890:three_prime_UTR |
| GAAAATGTGCTTGTTCTGCT+CGG | 0.546825 | 1_1:+55569767 | None:intergenic |
| TCCTGATTGTCCTAGTACCA+TGG | 0.550611 | 1_1:-55569274 | Msa0029890:CDS |
| ATGAGTGACACGAGCAACAC+TGG | 0.552524 | 1_1:+55569356 | None:intergenic |
| GTCAACATAGAAGAGTTCAA+TGG | 0.556338 | 1_1:+55569650 | None:intergenic |
| CATTGTTGACAGTGTTGTGC+AGG | 0.556795 | 1_1:-55574392 | Msa0029890:intron |
| GTCCCTGGCTCAATGTGAGG+TGG | 0.560739 | 1_1:+55568783 | None:intergenic |
| CTTAAGACACTCCTATCAGC+TGG | 0.567003 | 1_1:-55574556 | Msa0029890:CDS |
| CAACAGATGGTCCTTTGCTA+AGG | 0.567238 | 1_1:+55569487 | None:intergenic |
| CAATGTGTGTTGAACGTGCA+AGG | 0.571029 | 1_1:+55574410 | None:intergenic |
| ACAGTGGTGAACTAAAATTC+GGG | 0.577031 | 1_1:+55574245 | None:intergenic |
| TCATATGCAAGCTCCAAAGC+AGG | 0.578263 | 1_1:+55573133 | None:intergenic |
| TGATGAAATAAGAATTCAGA+AGG | 0.583273 | 1_1:-55570323 | Msa0029890:CDS |
| TAAAATTTGGTCATCAGACA+TGG | 0.584340 | 1_1:+55574510 | None:intergenic |
| AAGAGTACCTTTGATGATGG+TGG | 0.585987 | 1_1:+55574576 | None:intergenic |
| ATAGCTAATGAAAATCTCCA+TGG | 0.586541 | 1_1:+55569257 | None:intergenic |
| TGTGTCACTGTGGACATGTG+TGG | 0.587756 | 1_1:+55574474 | None:intergenic |
| ATGTTACAACATAATTGGCG+TGG | 0.588841 | 1_1:+55569056 | None:intergenic |
| AAAGCCACAGATTTGGCAAG+TGG | 0.592499 | 1_1:+55573313 | None:intergenic |
| GTGCAAGGGTATTCTGAGCA+AGG | 0.592657 | 1_1:+55574425 | None:intergenic |
| TGACCACTCAACACAACAGA+TGG | 0.592856 | 1_1:+55569474 | None:intergenic |
| CAAGCTTTCACACTATGACT+GGG | 0.595446 | 1_1:-55573419 | Msa0029890:CDS |
| AAGCACCACTGTTATTTCAG+TGG | 0.599341 | 1_1:+55572571 | None:intergenic |
| CGCTCCAAAATCGACTTACG+AGG | 0.601393 | 1_1:+55569613 | None:intergenic |
| GGTGTTTAGTCCTCAAGGAA+AGG | 0.602732 | 1_1:-55570413 | Msa0029890:CDS |
| TGCAAGGGTATTCTGAGCAA+GGG | 0.608420 | 1_1:+55574426 | None:intergenic |
| TCCGTCCCTGGCTCAATGTG+AGG | 0.608740 | 1_1:+55568780 | None:intergenic |
| GAGTAAGATGCCATGGTATG+TGG | 0.608793 | 1_1:-55570512 | Msa0029890:intron |
| GTCATGCAAGCCACCAAGTG+AGG | 0.613274 | 1_1:-55573476 | Msa0029890:CDS |
| CAAAACATTAGGGTTTGACG+TGG | 0.614141 | 1_1:-55569203 | Msa0029890:exon |
| TGAACTCTTCTATGTTGACA+AGG | 0.614303 | 1_1:-55569646 | Msa0029890:CDS |
| AAGCCACAGATTTGGCAAGT+GGG | 0.620286 | 1_1:+55573314 | None:intergenic |
| ACTATGGCCACCATCATCAA+AGG | 0.622601 | 1_1:-55574583 | Msa0029890:CDS |
| AGACCCACTTGCCAAATCTG+TGG | 0.631402 | 1_1:-55573317 | Msa0029890:CDS |
| AAACTTACGATTCAGTGATG+AGG | 0.634674 | 1_1:+55573044 | None:intergenic |
| ACATTCTGCACCACATACCA+TGG | 0.636446 | 1_1:+55570502 | None:intergenic |
| GGTTGGGCTCTCCTTAGCAA+AGG | 0.640640 | 1_1:-55569498 | Msa0029890:CDS |
| TGCATCGTTTGCAAGAGCAG+TGG | 0.641635 | 1_1:+55569695 | None:intergenic |
| GATCTCGTGAATAAGAGTGT+GGG | 0.653673 | 1_1:-55569104 | Msa0029890:three_prime_UTR |
| GGACCATCTGTTGTGTTGAG+TGG | 0.654679 | 1_1:-55569477 | Msa0029890:CDS |
| TGATCTCGTGAATAAGAGTG+TGG | 0.660825 | 1_1:-55569105 | Msa0029890:three_prime_UTR |
| TAATGATAGGTATGACACAA+AGG | 0.667392 | 1_1:-55573161 | Msa0029890:intron |
| TACAACAATTCTCAAAACTG+TGG | 0.669361 | 1_1:-55569448 | Msa0029890:CDS |
| AATGTGTGTTGAACGTGCAA+GGG | 0.673789 | 1_1:+55574411 | None:intergenic |
| AACTCCCACTGAAATAACAG+TGG | 0.711449 | 1_1:-55572576 | Msa0029890:intron |
| ATTGACTTCAAGGTGCACAG+TGG | 0.759523 | 1_1:+55574229 | None:intergenic |
| TTCTACTCTAGATGTCACGG+AGG | 0.776640 | 1_1:-55570659 | Msa0029890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAGGATATTTAATTTAA+AGG | + | chr1_1:55569096-55569115 | None:intergenic | 10.0% |
| !! | AATAGATACTTAAAAAAAAA+CGG | - | chr1_1:55569618-55569637 | Msa0029890:CDS | 10.0% |
| !! | ATTAAACATATTAAAAAGTA+TGG | + | chr1_1:55570462-55570481 | None:intergenic | 10.0% |
| !!! | CTAATTTTTATTAATTATGT+AGG | - | chr1_1:55570501-55570520 | Msa0029890:intron | 10.0% |
| !!! | AAATTTCTAATATTTTTCTT+TGG | + | chr1_1:55571529-55571548 | None:intergenic | 10.0% |
| !!! | TTTAATTAAAAAGTATTATG+TGG | - | chr1_1:55572081-55572100 | Msa0029890:intron | 10.0% |
| !! | TCTATAAAAAAAATATTTAG+AGG | + | chr1_1:55572651-55572670 | None:intergenic | 10.0% |
| !!! | AGTAAATTTGATCTAAAATT+TGG | + | chr1_1:55568937-55568956 | None:intergenic | 15.0% |
| !! | TCATAACTATTATGAATTAA+AGG | + | chr1_1:55569112-55569131 | None:intergenic | 15.0% |
| !! | TAGAAATTAACATAATAAAG+TGG | + | chr1_1:55569720-55569739 | None:intergenic | 15.0% |
| !!! | TTAACTCATATTAGTTTAAT+TGG | + | chr1_1:55569845-55569864 | None:intergenic | 15.0% |
| !! | ATACTAAATAAACAAAGTAA+AGG | + | chr1_1:55570700-55570719 | None:intergenic | 15.0% |
| !! | GAAAAAAATTAAAGTTGTAT+TGG | + | chr1_1:55571016-55571035 | None:intergenic | 15.0% |
| !! | AGAAAAATATTAGAAATTTG+TGG | - | chr1_1:55571530-55571549 | Msa0029890:intron | 15.0% |
| !! | GTATATATTCATTATTTCAA+AGG | - | chr1_1:55571803-55571822 | Msa0029890:intron | 15.0% |
| !! | ATTGAAATTACAATATTGAT+AGG | - | chr1_1:55572319-55572338 | Msa0029890:intron | 15.0% |
| !! | TAAATTCTAAATGAAATTGA+TGG | - | chr1_1:55572362-55572381 | Msa0029890:intron | 15.0% |
| !! | AAATTAAGAGCTAAATAATA+TGG | + | chr1_1:55572681-55572700 | None:intergenic | 15.0% |
| !!! | TTACAATCATATTTTGATTT+TGG | - | chr1_1:55573455-55573474 | Msa0029890:CDS | 15.0% |
| !!! | TAATAGTTATGAATTTTGAC+AGG | - | chr1_1:55569120-55569139 | Msa0029890:three_prime_UTR | 20.0% |
| !!! | AATAGTTATGAATTTTGACA+GGG | - | chr1_1:55569121-55569140 | Msa0029890:three_prime_UTR | 20.0% |
| !! | CATTGAATTTATACTTGAAT+TGG | - | chr1_1:55570240-55570259 | Msa0029890:intron | 20.0% |
| !! | AATATAAATGAGTACTAATG+TGG | - | chr1_1:55570772-55570791 | Msa0029890:intron | 20.0% |
| !!! | AAAGTTGAAGTATTTATTGA+AGG | + | chr1_1:55571050-55571069 | None:intergenic | 20.0% |
| !!! | TGTCTTTTTCTTATAAAGTA+AGG | - | chr1_1:55571103-55571122 | Msa0029890:intron | 20.0% |
| !! | AAATGGAATGAAATAATCAT+TGG | + | chr1_1:55571152-55571171 | None:intergenic | 20.0% |
| !!! | TGCTTTTAAACTTTTTTTGT+TGG | + | chr1_1:55571998-55572017 | None:intergenic | 20.0% |
| !!! | TGACTTTTTTTGGTTTATTA+TGG | + | chr1_1:55572151-55572170 | None:intergenic | 20.0% |
| !!! | AGATTTTTAACTTGATTACT+TGG | + | chr1_1:55572174-55572193 | None:intergenic | 20.0% |
| !! | AAGTAATCAAGTTAAAAATC+TGG | - | chr1_1:55572173-55572192 | Msa0029890:intron | 20.0% |
| !! | AGTAATCAAGTTAAAAATCT+GGG | - | chr1_1:55572174-55572193 | Msa0029890:intron | 20.0% |
| !!! | TAATTTACAAAAAGTATGTG+TGG | + | chr1_1:55572241-55572260 | None:intergenic | 20.0% |
| !! | AAAAATTGTTTCAAACATGT+AGG | + | chr1_1:55572265-55572284 | None:intergenic | 20.0% |
| !! | AAAATAAATGAGAAGAGAAA+AGG | + | chr1_1:55572415-55572434 | None:intergenic | 20.0% |
| !! | CAAGAGAAATATGAAAAAAA+GGG | - | chr1_1:55572496-55572515 | Msa0029890:intron | 20.0% |
| !!! | TATTATTAGTGTTTTGATGA+TGG | - | chr1_1:55572550-55572569 | Msa0029890:intron | 20.0% |
| !! | TTGAGGAAAAAAATATTTAG+AGG | + | chr1_1:55572617-55572636 | None:intergenic | 20.0% |
| !!! | TAGAGGATTTTTTTTTTTTG+AGG | + | chr1_1:55572634-55572653 | None:intergenic | 20.0% |
| !! | TTTCATGAAATTTACATGTT+TGG | + | chr1_1:55573335-55573354 | None:intergenic | 20.0% |
| !!! | CAAACATAAATTTTTAGTCA+TGG | + | chr1_1:55573502-55573521 | None:intergenic | 20.0% |
| !! | CGTCTTAAAAAAATGTTATT+GGG | - | chr1_1:55574293-55574312 | Msa0029890:intron | 20.0% |
| !! | TCTTTATGTTACAACATAAT+TGG | + | chr1_1:55574383-55574402 | None:intergenic | 20.0% |
| !! | TGTGTATGATGTTTATGTTT+TGG | + | chr1_1:55569299-55569318 | None:intergenic | 25.0% |
| ! | AAACATAAACATCATACACA+TGG | - | chr1_1:55569299-55569318 | Msa0029890:CDS | 25.0% |
| ! | AATTGGATTACCTTAATGAT+AGG | - | chr1_1:55570257-55570276 | Msa0029890:intron | 25.0% |
| ! | AAAATGAGTACAAAACTTTG+TGG | - | chr1_1:55571289-55571308 | Msa0029890:intron | 25.0% |
| !!! | TAGAAAAGTTGATATCGATT+TGG | - | chr1_1:55571781-55571800 | Msa0029890:intron | 25.0% |
| ! | TTTCAAAGGACTTATCAATT+TGG | - | chr1_1:55571817-55571836 | Msa0029890:intron | 25.0% |
| ! | TGAATTCCACAAACTTTAAA+TGG | + | chr1_1:55571963-55571982 | None:intergenic | 25.0% |
| !! | GTTTATTATGGAGTTTTCAA+CGG | + | chr1_1:55572139-55572158 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTCATATTTCTCT+TGG | + | chr1_1:55572498-55572517 | None:intergenic | 25.0% |
| ! | CCAAGAGAAATATGAAAAAA+AGG | - | chr1_1:55572495-55572514 | Msa0029890:intron | 25.0% |
| ! | ATGAACAATACAAGATTGTT+TGG | - | chr1_1:55572840-55572859 | Msa0029890:intron | 25.0% |
| !! | GCAAGAAATTCGATATTTTA+AGG | - | chr1_1:55572897-55572916 | Msa0029890:intron | 25.0% |
| ! | TCAAGTTCATTAATGAAGAA+TGG | - | chr1_1:55572969-55572988 | Msa0029890:intron | 25.0% |
| ! | CAAGTTCATTAATGAAGAAT+GGG | - | chr1_1:55572970-55572989 | Msa0029890:intron | 25.0% |
| ! | TTTCATCATCCATTGTAAAT+GGG | + | chr1_1:55573096-55573115 | None:intergenic | 25.0% |
| ! | ATTTCATCATCCATTGTAAA+TGG | + | chr1_1:55573097-55573116 | None:intergenic | 25.0% |
| ! | TGATGAAATAAGAATTCAGA+AGG | - | chr1_1:55573108-55573127 | Msa0029890:CDS | 25.0% |
| ! | TTACAAAAATGAAACTGGTT+GGG | - | chr1_1:55573917-55573936 | Msa0029890:intron | 25.0% |
| ! | AAAGATGTTGTTATCAAGAA+GGG | - | chr1_1:55574023-55574042 | Msa0029890:intron | 25.0% |
| ! | AATGCAAATGCAAAACATTA+GGG | - | chr1_1:55574218-55574237 | Msa0029890:intron | 25.0% |
| ! | GCGTCTTAAAAAAATGTTAT+TGG | - | chr1_1:55574292-55574311 | Msa0029890:CDS | 25.0% |
| ! | CTTTGTAAACCCAAAAATAA+TGG | - | chr1_1:55574404-55574423 | Msa0029890:CDS | 25.0% |
| !!! | AACACAACACCATTATTTTT+GGG | + | chr1_1:55574416-55574435 | None:intergenic | 25.0% |
| TAAAATTTGGTCATCAGACA+TGG | + | chr1_1:55568924-55568943 | None:intergenic | 30.0% | |
| TGAACTAAAATTCGGGATAA+GGG | + | chr1_1:55569182-55569201 | None:intergenic | 30.0% | |
| TATCACTGAGCTTAATAGTT+TGG | - | chr1_1:55570198-55570217 | Msa0029890:intron | 30.0% | |
| TTGTGTCATACCTATCATTA+AGG | + | chr1_1:55570270-55570289 | None:intergenic | 30.0% | |
| TAATGATAGGTATGACACAA+AGG | - | chr1_1:55570270-55570289 | Msa0029890:intron | 30.0% | |
| AAATTCCTGTTGATGTTTAC+TGG | - | chr1_1:55570323-55570342 | Msa0029890:CDS | 30.0% | |
| ATTGTTCTGTAAGTACAACT+CGG | + | chr1_1:55570437-55570456 | None:intergenic | 30.0% | |
| GTAAATTTCTCGATCTCTAA+CGG | - | chr1_1:55570622-55570641 | Msa0029890:CDS | 30.0% | |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr1_1:55571194-55571213 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr1_1:55571195-55571214 | Msa0029890:intron | 30.0% |
| ATTATTATGACACGTGTTTC+TGG | + | chr1_1:55571591-55571610 | None:intergenic | 30.0% | |
| AGAAACACGTGTCATAATAA+TGG | - | chr1_1:55571590-55571609 | Msa0029890:intron | 30.0% | |
| GAAACACGTGTCATAATAAT+GGG | - | chr1_1:55571591-55571610 | Msa0029890:intron | 30.0% | |
| ATTATTATGACACGTGTTTC+TGG | + | chr1_1:55571591-55571610 | None:intergenic | 30.0% | |
| AGAAACACGTGTCATAATAA+TGG | - | chr1_1:55571590-55571609 | Msa0029890:intron | 30.0% | |
| GAAACACGTGTCATAATAAT+GGG | - | chr1_1:55571591-55571610 | Msa0029890:intron | 30.0% | |
| ! | TCTGCTTTCTTTCTTTTTCT+TGG | + | chr1_1:55571758-55571777 | None:intergenic | 30.0% |
| ! | TCGTTTCCATTTAAAGTTTG+TGG | - | chr1_1:55571954-55571973 | Msa0029890:intron | 30.0% |
| !!! | GATTACTTGGTGACTTTTTT+TGG | + | chr1_1:55572161-55572180 | None:intergenic | 30.0% |
| AAAAGGTAACTTCTATGCAA+AGG | + | chr1_1:55572398-55572417 | None:intergenic | 30.0% | |
| ! | TTTTTCATATTTCTCTTGGC+TGG | + | chr1_1:55572494-55572513 | None:intergenic | 30.0% |
| !! | ATTAATTTGTTAAACCGTGC+AGG | - | chr1_1:55572703-55572722 | Msa0029890:intron | 30.0% |
| CAAAAAGAAGTCTATGTTTG+TGG | - | chr1_1:55572997-55573016 | Msa0029890:intron | 30.0% | |
| TTCCATTTGATCATGTCTTA+TGG | - | chr1_1:55573058-55573077 | Msa0029890:CDS | 30.0% | |
| TTCCATAAGACATGATCAAA+TGG | + | chr1_1:55573063-55573082 | None:intergenic | 30.0% | |
| AAATAAGAATTCAGAAGGAC+AGG | - | chr1_1:55573113-55573132 | Msa0029890:CDS | 30.0% | |
| TTAACCACAACATTTCCATA+TGG | - | chr1_1:55573164-55573183 | Msa0029890:intron | 30.0% | |
| TAACCACAACATTTCCATAT+GGG | - | chr1_1:55573165-55573184 | Msa0029890:intron | 30.0% | |
| CGAAAATTTACTTACCCATA+TGG | + | chr1_1:55573182-55573201 | None:intergenic | 30.0% | |
| ! | TGTAAAGACCGTTGAATTTT+GGG | - | chr1_1:55573241-55573260 | Msa0029890:CDS | 30.0% |
| ! | AACAAGCACATTTTCTTCTA+CGG | - | chr1_1:55573672-55573691 | Msa0029890:intron | 30.0% |
| !! | ATCGGTTGTTTTGTGAATTT+TGG | + | chr1_1:55573865-55573884 | None:intergenic | 30.0% |
| CTGTCTTACAAAAATGAAAC+TGG | - | chr1_1:55573912-55573931 | Msa0029890:intron | 30.0% | |
| CTTACAAAAATGAAACTGGT+TGG | - | chr1_1:55573916-55573935 | Msa0029890:intron | 30.0% | |
| TACAACAATTCTCAAAACTG+TGG | - | chr1_1:55573983-55574002 | Msa0029890:intron | 30.0% | |
| GAAAGATGTTGTTATCAAGA+AGG | - | chr1_1:55574022-55574041 | Msa0029890:intron | 30.0% | |
| ATAGCTAATGAAAATCTCCA+TGG | + | chr1_1:55574177-55574196 | None:intergenic | 30.0% | |
| ! | CTAATGTTTTGCATTTGCAT+TGG | + | chr1_1:55574219-55574238 | None:intergenic | 30.0% |
| CAATGCAAATGCAAAACATT+AGG | - | chr1_1:55574217-55574236 | Msa0029890:intron | 30.0% | |
| ! | CAACACAACACCATTATTTT+TGG | + | chr1_1:55574417-55574436 | None:intergenic | 30.0% |
| !!! | GTGTTGTTTTCTATGTATTG+TGG | - | chr1_1:55574431-55574450 | Msa0029890:CDS | 30.0% |
| ! | TTTTCTATGTATTGTGGTTG+TGG | - | chr1_1:55574437-55574456 | Msa0029890:CDS | 30.0% |
| AATGTGAGGTGGAATAAAAT+TGG | + | chr1_1:55574640-55574659 | None:intergenic | 30.0% | |
| CTAGCTCGTTAAAAAAGGTT+TGG | + | chr1_1:55568827-55568846 | None:intergenic | 35.0% | |
| TAGTGCTAGCTCGTTAAAAA+AGG | + | chr1_1:55568832-55568851 | None:intergenic | 35.0% | |
| ! | TTTTTAACGAGCTAGCACTA+TGG | - | chr1_1:55568832-55568851 | Msa0029890:three_prime_UTR | 35.0% |
| !! | CTTAAGAGTACCTTTGATGA+TGG | + | chr1_1:55568861-55568880 | None:intergenic | 35.0% |
| !! | CATCAAATTTTGTGTCACTG+TGG | + | chr1_1:55568970-55568989 | None:intergenic | 35.0% |
| GTGAACTAAAATTCGGGATA+AGG | + | chr1_1:55569183-55569202 | None:intergenic | 35.0% | |
| ACAGTGGTGAACTAAAATTC+GGG | + | chr1_1:55569189-55569208 | None:intergenic | 35.0% | |
| CACAGTGGTGAACTAAAATT+CGG | + | chr1_1:55569190-55569209 | None:intergenic | 35.0% | |
| ! | CTCAGAAGAAATTGACTTCA+AGG | + | chr1_1:55569215-55569234 | None:intergenic | 35.0% |
| CTTGAAGTCAATTTCTTCTG+AGG | - | chr1_1:55569213-55569232 | Msa0029890:exon | 35.0% | |
| TCTGCATTTGCACTTGAATT+TGG | - | chr1_1:55570058-55570077 | Msa0029890:intron | 35.0% | |
| ! | CACTTGAATTTGGTGAATTC+TGG | - | chr1_1:55570068-55570087 | Msa0029890:intron | 35.0% |
| TATTAAGCTCAGTGATAGCT+TGG | + | chr1_1:55570195-55570214 | None:intergenic | 35.0% | |
| AATAGCAGCAATAGTGATGA+TGG | + | chr1_1:55570350-55570369 | None:intergenic | 35.0% | |
| AAACTTACGATTCAGTGATG+AGG | + | chr1_1:55570390-55570409 | None:intergenic | 35.0% | |
| !! | AAAGGTGTTTGAATCCTCAT+CGG | + | chr1_1:55570682-55570701 | None:intergenic | 35.0% |
| GTAACAGTTTCTTAAGCTCT+TGG | + | chr1_1:55570834-55570853 | None:intergenic | 35.0% | |
| ! | TTCGTTTCTGATTTTTCCCA+AGG | - | chr1_1:55570882-55570901 | Msa0029890:intron | 35.0% |
| ! | TCGTTTCTGATTTTTCCCAA+GGG | - | chr1_1:55570883-55570902 | Msa0029890:intron | 35.0% |
| TTGGCACACAGATTAAGAAA+TGG | + | chr1_1:55571169-55571188 | None:intergenic | 35.0% | |
| !!! | ATGAGTGTCGTTTTAGGTTT+TGG | + | chr1_1:55571188-55571207 | None:intergenic | 35.0% |
| GTACAAAACTTTGTGGTACT+TGG | - | chr1_1:55571296-55571315 | Msa0029890:intron | 35.0% | |
| GGAATTCGTACTGTATGAAA+AGG | - | chr1_1:55572195-55572214 | Msa0029890:intron | 35.0% | |
| ! | TGTTTCTACTCTAGATGTCA+CGG | - | chr1_1:55572769-55572788 | Msa0029890:intron | 35.0% |
| !! | TTTTAAGGAGTAAGATGCCA+TGG | - | chr1_1:55572912-55572931 | Msa0029890:intron | 35.0% |
| GATCATGTCTTATGGAATCA+AGG | - | chr1_1:55573066-55573085 | Msa0029890:CDS | 35.0% | |
| AACTGGATTGTATCTGTTGT+AGG | - | chr1_1:55573136-55573155 | Msa0029890:CDS | 35.0% | |
| TTACCCATATGGAAATGTTG+TGG | + | chr1_1:55573171-55573190 | None:intergenic | 35.0% | |
| ! | GGGTAAGTAAATTTTCGACT+TGG | - | chr1_1:55573185-55573204 | Msa0029890:intron | 35.0% |
| AACAACATACTTCACAACTG+TGG | + | chr1_1:55573216-55573235 | None:intergenic | 35.0% | |
| ! | GTGTAAAGACCGTTGAATTT+TGG | - | chr1_1:55573240-55573259 | Msa0029890:CDS | 35.0% |
| GCTTCTCTCTTTAAATCTCA+CGG | - | chr1_1:55573282-55573301 | Msa0029890:CDS | 35.0% | |
| TTACAACTTCAGCAGATAGA+CGG | - | chr1_1:55573308-55573327 | Msa0029890:CDS | 35.0% | |
| !! | AAAACCTCGTAAGTCGATTT+TGG | - | chr1_1:55573814-55573833 | Msa0029890:intron | 35.0% |
| CAGCAACAATAGGAATTTCA+AGG | + | chr1_1:55574112-55574131 | None:intergenic | 35.0% | |
| CTTGAAATTCCTATTGTTGC+TGG | - | chr1_1:55574110-55574129 | Msa0029890:intron | 35.0% | |
| ! | TCAGGACATTTTATAGTCTC+AGG | + | chr1_1:55574143-55574162 | None:intergenic | 35.0% |
| ATGAAAATCTCCATGGTACT+AGG | + | chr1_1:55574170-55574189 | None:intergenic | 35.0% | |
| !! | CATTTGCATTGGTCTTATTG+TGG | + | chr1_1:55574208-55574227 | None:intergenic | 35.0% |
| !!! | TTGACGTGGTTTTATGTTAC+TGG | - | chr1_1:55574242-55574261 | Msa0029890:CDS | 35.0% |
| !!! | TGACGTGGTTTTATGTTACT+GGG | - | chr1_1:55574243-55574262 | Msa0029890:CDS | 35.0% |
| ! | TTTTATGTTACTGGGTCTTG+TGG | - | chr1_1:55574251-55574270 | Msa0029890:CDS | 35.0% |
| ATGTTACAACATAATTGGCG+TGG | + | chr1_1:55574378-55574397 | None:intergenic | 35.0% | |
| !! | AAGAGTACCTTTGATGATGG+TGG | + | chr1_1:55568858-55568877 | None:intergenic | 40.0% |
| GGTCATCAGACATGGTTAAT+GGG | + | chr1_1:55568916-55568935 | None:intergenic | 40.0% | |
| TGGTCATCAGACATGGTTAA+TGG | + | chr1_1:55568917-55568936 | None:intergenic | 40.0% | |
| AATGTGTGTTGAACGTGCAA+GGG | + | chr1_1:55569023-55569042 | None:intergenic | 40.0% | |
| TTGTGTGCAATTTCCTCACT+TGG | + | chr1_1:55569971-55569990 | None:intergenic | 40.0% | |
| ! | GTGTGAAAGCTTGTTCAGTA+TGG | + | chr1_1:55570005-55570024 | None:intergenic | 40.0% |
| ACAAGCTTTCACACTATGAC+TGG | - | chr1_1:55570011-55570030 | Msa0029890:intron | 40.0% | |
| CAAGCTTTCACACTATGACT+GGG | - | chr1_1:55570012-55570031 | Msa0029890:intron | 40.0% | |
| TTTCAGCAAAGCCACAGATT+TGG | + | chr1_1:55570128-55570147 | None:intergenic | 40.0% | |
| !! | CGATGTTTTTGAATTGCTGC+AGG | + | chr1_1:55570172-55570191 | None:intergenic | 40.0% |
| ATGGTCCAGTAAACATCAAC+AGG | + | chr1_1:55570331-55570350 | None:intergenic | 40.0% | |
| TGCTGCTATTGTTACTCAGT+TGG | - | chr1_1:55570360-55570379 | Msa0029890:CDS | 40.0% | |
| AAGCAAGAACTTTCGCACTA+TGG | - | chr1_1:55570530-55570549 | Msa0029890:CDS | 40.0% | |
| !! | AGTATGGTGTTGCAGTTGTA+AGG | + | chr1_1:55570649-55570668 | None:intergenic | 40.0% |
| CATCGGATACAGATGTAGTA+TGG | + | chr1_1:55570665-55570684 | None:intergenic | 40.0% | |
| TACTACATCTGTATCCGATG+AGG | - | chr1_1:55570665-55570684 | Msa0029890:CDS | 40.0% | |
| AACTCCCACTGAAATAACAG+TGG | - | chr1_1:55570855-55570874 | Msa0029890:intron | 40.0% | |
| !! | AGCACCACTGTTATTTCAGT+GGG | + | chr1_1:55570862-55570881 | None:intergenic | 40.0% |
| !! | AAGCACCACTGTTATTTCAG+TGG | + | chr1_1:55570863-55570882 | None:intergenic | 40.0% |
| AAAGATACGAACCGTAGTCT+TGG | + | chr1_1:55570938-55570957 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1_1:55571199-55571218 | Msa0029890:intron | 40.0% |
| CAAAACTTTGTGGTACTTGG+TGG | - | chr1_1:55571299-55571318 | Msa0029890:intron | 40.0% | |
| GACATTAATGTCAACCTGCA+CGG | + | chr1_1:55572720-55572739 | None:intergenic | 40.0% | |
| CAGAATGTCGAAAACATAGC+TGG | - | chr1_1:55572944-55572963 | Msa0029890:intron | 40.0% | |
| TTTGTGGTGTTTAGTCCTCA+AGG | - | chr1_1:55573013-55573032 | Msa0029890:intron | 40.0% | |
| CAAGGCTTTCCCATTTACAA+TGG | - | chr1_1:55573084-55573103 | Msa0029890:CDS | 40.0% | |
| AACATACTTCACAACTGTGG+AGG | + | chr1_1:55573213-55573232 | None:intergenic | 40.0% | |
| GTTGTGAAGTATGTTGTTGC+AGG | - | chr1_1:55573218-55573237 | Msa0029890:intron | 40.0% | |
| GCTTCTCTCCCAAAATTCAA+CGG | + | chr1_1:55573252-55573271 | None:intergenic | 40.0% | |
| GTCTATCTGCTGAAGTTGTA+AGG | + | chr1_1:55573309-55573328 | None:intergenic | 40.0% | |
| GAAAATGTGCTTGTTCTGCT+CGG | + | chr1_1:55573667-55573686 | None:intergenic | 40.0% | |
| ! | AAGCACATTTTCTTCTACGG+CGG | - | chr1_1:55573675-55573694 | Msa0029890:intron | 40.0% |
| GTTGGATCCATTCTTTGTCA+TGG | + | chr1_1:55573701-55573720 | None:intergenic | 40.0% | |
| TGGCATACTTAGTGAACTGT+TGG | + | chr1_1:55573719-55573738 | None:intergenic | 40.0% | |
| ! | CACTTCTTGTGTCACTACAT+CGG | + | chr1_1:55573883-55573902 | None:intergenic | 40.0% |
| CTGTGGCTGAATTTGAGAAA+TGG | - | chr1_1:55574000-55574019 | Msa0029890:intron | 40.0% | |
| GGTAACTTTCCAGCAACAAT+AGG | + | chr1_1:55574122-55574141 | None:intergenic | 40.0% | |
| CAAAACATTAGGGTTTGACG+TGG | - | chr1_1:55574228-55574247 | Msa0029890:CDS | 40.0% | |
| TGATCTCGTGAATAAGAGTG+TGG | - | chr1_1:55574326-55574345 | Msa0029890:intron | 40.0% | |
| ! | GATCTCGTGAATAAGAGTGT+GGG | - | chr1_1:55574327-55574346 | Msa0029890:intron | 40.0% |
| ACTATGGCCACCATCATCAA+AGG | - | chr1_1:55568848-55568867 | Msa0029890:three_prime_UTR | 45.0% | |
| CTTAAGACACTCCTATCAGC+TGG | - | chr1_1:55568875-55568894 | Msa0029890:three_prime_UTR | 45.0% | |
| TCTCAATCTCACCAGCTGAT+AGG | + | chr1_1:55568889-55568908 | None:intergenic | 45.0% | |
| !! | TGCAAGGGTATTCTGAGCAA+GGG | + | chr1_1:55569008-55569027 | None:intergenic | 45.0% |
| CAATGTGTGTTGAACGTGCA+AGG | + | chr1_1:55569024-55569043 | None:intergenic | 45.0% | |
| CATTGTTGACAGTGTTGTGC+AGG | - | chr1_1:55569039-55569058 | Msa0029890:three_prime_UTR | 45.0% | |
| ! | ACAGGGTACCAAAGTAAGCT+TGG | - | chr1_1:55569138-55569157 | Msa0029890:three_prime_UTR | 45.0% |
| TGCTTGCTCCAAGCTTACTT+TGG | + | chr1_1:55569149-55569168 | None:intergenic | 45.0% | |
| ! | ATTGACTTCAAGGTGCACAG+TGG | + | chr1_1:55569205-55569224 | None:intergenic | 45.0% |
| TGTGCAATTTCCTCACTTGG+TGG | + | chr1_1:55569968-55569987 | None:intergenic | 45.0% | |
| AAGCCACAGATTTGGCAAGT+GGG | + | chr1_1:55570120-55570139 | None:intergenic | 45.0% | |
| AAAGCCACAGATTTGGCAAG+TGG | + | chr1_1:55570121-55570140 | None:intergenic | 45.0% | |
| CACAAAGGTTGTTCCTGCTT+TGG | - | chr1_1:55570285-55570304 | Msa0029890:intron | 45.0% | |
| TCATATGCAAGCTCCAAAGC+AGG | + | chr1_1:55570301-55570320 | None:intergenic | 45.0% | |
| ACGGTCTGTCGTCAACAAAT+AGG | - | chr1_1:55570596-55570615 | Msa0029890:CDS | 45.0% | |
| ! | GTTCCTCAGCTGCTTTATGA+TGG | - | chr1_1:55570907-55570926 | Msa0029890:intron | 45.0% |
| !! | TGATGGTGCTACCAAGACTA+CGG | - | chr1_1:55570924-55570943 | Msa0029890:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1_1:55571198-55571217 | Msa0029890:intron | 45.0% |
| TTCTACTCTAGATGTCACGG+AGG | - | chr1_1:55572772-55572791 | Msa0029890:intron | 45.0% | |
| GGATTCCAATCGTCGAAGAA+TGG | - | chr1_1:55572861-55572880 | Msa0029890:intron | 45.0% | |
| TCGTTCCATTCTTCGACGAT+TGG | + | chr1_1:55572869-55572888 | None:intergenic | 45.0% | |
| GAGTAAGATGCCATGGTATG+TGG | - | chr1_1:55572919-55572938 | Msa0029890:intron | 45.0% | |
| ACATTCTGCACCACATACCA+TGG | + | chr1_1:55572932-55572951 | None:intergenic | 45.0% | |
| GGTGTTTAGTCCTCAAGGAA+AGG | - | chr1_1:55573018-55573037 | Msa0029890:intron | 45.0% | |
| TTGTGTTGCACCTTTCCTTG+AGG | + | chr1_1:55573031-55573050 | None:intergenic | 45.0% | |
| GAATTCAGAAGGACAGGAAC+TGG | - | chr1_1:55573119-55573138 | Msa0029890:CDS | 45.0% | |
| ! | TGGGAGAGAAGCGATTTTAG+TGG | - | chr1_1:55573260-55573279 | Msa0029890:CDS | 45.0% |
| TTCTGCTCGGTCTGCATTAT+AGG | + | chr1_1:55573654-55573673 | None:intergenic | 45.0% | |
| !! | CTCGTAAGTCGATTTTGGAG+CGG | - | chr1_1:55573819-55573838 | Msa0029890:intron | 45.0% |
| CAACAGATGGTCCTTTGCTA+AGG | + | chr1_1:55573947-55573966 | None:intergenic | 45.0% | |
| TGACCACTCAACACAACAGA+TGG | + | chr1_1:55573960-55573979 | None:intergenic | 45.0% | |
| TCTGTTGTGTTGAGTGGTCA+TGG | - | chr1_1:55573960-55573979 | Msa0029890:intron | 45.0% | |
| TCCTGATTGTCCTAGTACCA+TGG | - | chr1_1:55574157-55574176 | Msa0029890:intron | 45.0% | |
| TCCATGGTACTAGGACAATC+AGG | + | chr1_1:55574161-55574180 | None:intergenic | 45.0% | |
| ! | TTACTGGGTCTTGTGGTCTT+TGG | - | chr1_1:55574258-55574277 | Msa0029890:CDS | 45.0% |
| ! | GTGGTCTTTGGTTCGATACT+TGG | - | chr1_1:55574270-55574289 | Msa0029890:CDS | 45.0% |
| ! | GTGGGACATTCAGAACCTTT+TGG | - | chr1_1:55574345-55574364 | Msa0029890:intron | 45.0% |
| TGGCGTGGAACATAACCAAA+AGG | + | chr1_1:55574363-55574382 | None:intergenic | 45.0% | |
| !!! | TAATTTTTATTAATTATGTA+GGG | - | chr1_1:55570502-55570521 | Msa0029890:intron | 5.0% |
| !!! | ATATATATTTTTTTAAGATA+CGG | - | chr1_1:55570798-55570817 | Msa0029890:intron | 5.0% |
| ! | TGTGTCACTGTGGACATGTG+TGG | + | chr1_1:55568960-55568979 | None:intergenic | 50.0% |
| !! | GTGCAAGGGTATTCTGAGCA+AGG | + | chr1_1:55569009-55569028 | None:intergenic | 50.0% |
| AGACCCACTTGCCAAATCTG+TGG | - | chr1_1:55570114-55570133 | Msa0029890:intron | 50.0% | |
| GAATTGCTGCAGGCTTTGCT+AGG | + | chr1_1:55570162-55570181 | None:intergenic | 50.0% | |
| ACATCATCCTCAGCAGACTG+AGG | - | chr1_1:55570564-55570583 | Msa0029890:CDS | 50.0% | |
| CAGACTGAGGAAGCAGATCA+CGG | - | chr1_1:55570577-55570596 | Msa0029890:CDS | 50.0% | |
| GCACCATCATAAAGCAGCTG+AGG | + | chr1_1:55570913-55570932 | None:intergenic | 50.0% | |
| TGCATCGTTTGCAAGAGCAG+TGG | + | chr1_1:55573739-55573758 | None:intergenic | 50.0% | |
| ! | CGCTCCAAAATCGACTTACG+AGG | + | chr1_1:55573821-55573840 | None:intergenic | 50.0% |
| GGACCATCTGTTGTGTTGAG+TGG | - | chr1_1:55573954-55573973 | Msa0029890:intron | 50.0% | |
| ATGAGTGACACGAGCAACAC+TGG | + | chr1_1:55574078-55574097 | None:intergenic | 50.0% | |
| ! | GTGGTGTAGTCTTGAAGCGT+TGG | - | chr1_1:55574456-55574475 | Msa0029890:CDS | 50.0% |
| GTCATGCAAGCCACCAAGTG+AGG | - | chr1_1:55569955-55569974 | Msa0029890:intron | 55.0% | |
| CTGCAGGCTTTGCTAGGATC+GGG | + | chr1_1:55570156-55570175 | None:intergenic | 55.0% | |
| GCTGCAGGCTTTGCTAGGAT+CGG | + | chr1_1:55570157-55570176 | None:intergenic | 55.0% | |
| TCTGCTTCCTCAGTCTGCTG+AGG | + | chr1_1:55570574-55570593 | None:intergenic | 55.0% | |
| AGCAGCTGAGGAACACCCTT+GGG | + | chr1_1:55570901-55570920 | None:intergenic | 55.0% | |
| AAGCAGCTGAGGAACACCCT+TGG | + | chr1_1:55570902-55570921 | None:intergenic | 55.0% | |
| ACGGCGGCCATGACAAAGAA+TGG | - | chr1_1:55573691-55573710 | Msa0029890:intron | 55.0% | |
| GGTTGGGCTCTCCTTAGCAA+AGG | - | chr1_1:55573933-55573952 | Msa0029890:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 55568790 | 55574663 | 55568790 | ID=Msa0029890;Name=Msa0029890 |
| chr1_1 | mRNA | 55568790 | 55574663 | 55568790 | ID=Msa0029890-mRNA-1;Parent=Msa0029890;Name=Msa0029890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=61|0.37|0.33|1|0.5|0.33|9|425|594 |
| chr1_1 | exon | 55568790 | 55569790 | 55568790 | ID=Msa0029890-mRNA-1:exon:16606;Parent=Msa0029890-mRNA-1 |
| chr1_1 | exon | 55570309 | 55570506 | 55570309 | ID=Msa0029890-mRNA-1:exon:16605;Parent=Msa0029890-mRNA-1 |
| chr1_1 | exon | 55570513 | 55570728 | 55570513 | ID=Msa0029890-mRNA-1:exon:16604;Parent=Msa0029890-mRNA-1 |
| chr1_1 | exon | 55572577 | 55572638 | 55572577 | ID=Msa0029890-mRNA-1:exon:16603;Parent=Msa0029890-mRNA-1 |
| chr1_1 | exon | 55572902 | 55572930 | 55572902 | ID=Msa0029890-mRNA-1:exon:16602;Parent=Msa0029890-mRNA-1 |
| chr1_1 | exon | 55573052 | 55573174 | 55573052 | ID=Msa0029890-mRNA-1:exon:16601;Parent=Msa0029890-mRNA-1 |
| chr1_1 | exon | 55573223 | 55573500 | 55573223 | ID=Msa0029890-mRNA-1:exon:16600;Parent=Msa0029890-mRNA-1 |
| chr1_1 | exon | 55574219 | 55574311 | 55574219 | ID=Msa0029890-mRNA-1:exon:16599;Parent=Msa0029890-mRNA-1 |
| chr1_1 | exon | 55574393 | 55574663 | 55574393 | ID=Msa0029890-mRNA-1:exon:16598;Parent=Msa0029890-mRNA-1 |
| chr1_1 | five_prime_UTR | 55574603 | 55574663 | 55574603 | ID=Msa0029890-mRNA-1:five_prime_utr;Parent=Msa0029890-mRNA-1 |
| chr1_1 | CDS | 55574393 | 55574602 | 55574393 | ID=Msa0029890-mRNA-1:cds;Parent=Msa0029890-mRNA-1 |
| chr1_1 | CDS | 55574219 | 55574311 | 55574219 | ID=Msa0029890-mRNA-1:cds;Parent=Msa0029890-mRNA-1 |
| chr1_1 | CDS | 55573223 | 55573500 | 55573223 | ID=Msa0029890-mRNA-1:cds;Parent=Msa0029890-mRNA-1 |
| chr1_1 | CDS | 55573052 | 55573174 | 55573052 | ID=Msa0029890-mRNA-1:cds;Parent=Msa0029890-mRNA-1 |
| chr1_1 | CDS | 55572902 | 55572930 | 55572902 | ID=Msa0029890-mRNA-1:cds;Parent=Msa0029890-mRNA-1 |
| chr1_1 | CDS | 55572577 | 55572638 | 55572577 | ID=Msa0029890-mRNA-1:cds;Parent=Msa0029890-mRNA-1 |
| chr1_1 | CDS | 55570513 | 55570728 | 55570513 | ID=Msa0029890-mRNA-1:cds;Parent=Msa0029890-mRNA-1 |
| chr1_1 | CDS | 55570309 | 55570506 | 55570309 | ID=Msa0029890-mRNA-1:cds;Parent=Msa0029890-mRNA-1 |
| chr1_1 | CDS | 55569215 | 55569790 | 55569215 | ID=Msa0029890-mRNA-1:cds;Parent=Msa0029890-mRNA-1 |
| chr1_1 | three_prime_UTR | 55568790 | 55569214 | 55568790 | ID=Msa0029890-mRNA-1:three_prime_utr;Parent=Msa0029890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
