Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125100 | XP_003590760.1 | 98.659 | 671 | 9 | 0 | 1 | 671 | 1 | 671 | 0.0 | 1360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125100 | sp|Q9SS87|SEOB_ARATH | 31.224 | 711 | 406 | 21 | 23 | 664 | 34 | 730 | 1.92e-96 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125100 | E2FKJ6 | 98.659 | 671 | 9 | 0 | 1 | 671 | 1 | 671 | 0.0 | 1360 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002410 | Msa0125100 | 0.811394 | 7.156569e-51 | -8.615850e-47 |
| Msa0012060 | Msa0125100 | 0.805152 | 1.532086e-49 | -8.615850e-47 |
| Msa0017510 | Msa0125100 | 0.801255 | 9.816600e-49 | -8.615850e-47 |
| Msa0029880 | Msa0125100 | 0.912154 | 2.695982e-83 | -8.615850e-47 |
| Msa0029890 | Msa0125100 | 0.907809 | 3.389545e-81 | -8.615850e-47 |
| Msa0029900 | Msa0125100 | 0.816793 | 4.604279e-52 | -8.615850e-47 |
| Msa0077130 | Msa0125100 | 0.824442 | 8.055564e-54 | -8.615850e-47 |
| Msa0077140 | Msa0125100 | 0.928343 | 3.303122e-92 | -8.615850e-47 |
| Msa0125090 | Msa0125100 | 0.909730 | 4.121473e-82 | -8.615850e-47 |
| Msa0125100 | Msa0157290 | 0.800287 | 1.546650e-48 | -8.615850e-47 |
| Msa0125100 | Msa0169860 | 0.880088 | 7.322029e-70 | -8.615850e-47 |
| Msa0125100 | Msa0169870 | 0.920948 | 6.692824e-88 | -8.615850e-47 |
| Msa0125100 | Msa0169920 | 0.805382 | 1.371769e-49 | -8.615850e-47 |
| Msa0125100 | Msa0170090 | 0.831570 | 1.549189e-55 | -8.615850e-47 |
| Msa0125100 | Msa0227470 | 0.801137 | 1.037688e-48 | -8.615850e-47 |
| Msa0125100 | Msa0243100 | 0.807079 | 6.022995e-50 | -8.615850e-47 |
| Msa0125100 | Msa0287650 | 0.800797 | 1.217531e-48 | -8.615850e-47 |
| Msa0125100 | Msa0363310 | 0.803179 | 3.944988e-49 | -8.615850e-47 |
| Msa0125100 | Msa0483650 | 0.812427 | 4.263623e-51 | -8.615850e-47 |
| Msa0125100 | Msa0512230 | 0.819168 | 1.338278e-52 | -8.615850e-47 |
| Msa0125100 | Msa0523460 | 0.805778 | 1.132637e-49 | -8.615850e-47 |
| Msa0125100 | Msa0536220 | 0.813004 | 3.186789e-51 | -8.615850e-47 |
| Msa0125100 | Msa0586910 | 0.810849 | 9.394179e-51 | -8.615850e-47 |
| Msa0125100 | Msa0657970 | 0.802229 | 6.194556e-49 | -8.615850e-47 |
| Msa0125100 | Msa0658570 | 0.805378 | 1.374009e-49 | -8.615850e-47 |
| Msa0125100 | Msa0664850 | 0.837357 | 5.453693e-57 | -8.615850e-47 |
| Msa0125100 | Msa0702350 | 0.801414 | 9.106381e-49 | -8.615850e-47 |
| Msa0125100 | Msa0702680 | 0.802533 | 5.362656e-49 | -8.615850e-47 |
| Msa0125100 | Msa0722780 | 0.808876 | 2.496256e-50 | -8.615850e-47 |
| Msa0125100 | Msa0722850 | 0.816648 | 4.962304e-52 | -8.615850e-47 |
| Msa0125100 | Msa0723000 | 0.821307 | 4.327664e-53 | -8.615850e-47 |
| Msa0125100 | Msa0723050 | 0.810288 | 1.242064e-50 | -8.615850e-47 |
| Msa0125100 | Msa0802860 | 0.800642 | 1.309476e-48 | -8.615850e-47 |
| Msa0125100 | Msa0867890 | 0.806039 | 9.983736e-50 | -8.615850e-47 |
| Msa0125100 | Msa0868020 | 0.819121 | 1.371770e-52 | -8.615850e-47 |
| Msa0125100 | Msa0880140 | 0.802569 | 5.270744e-49 | -8.615850e-47 |
| Msa0125100 | Msa0883060 | 0.805746 | 1.150422e-49 | -8.615850e-47 |
| Msa0125100 | Msa1082500 | 0.800065 | 1.716151e-48 | -8.615850e-47 |
| Msa0125100 | Msa1098560 | 0.809988 | 1.441167e-50 | -8.615850e-47 |
| Msa0125100 | Msa1101140 | 0.802883 | 4.541299e-49 | -8.615850e-47 |
| Msa0125100 | Msa1162550 | -0.809328 | 1.997521e-50 | -8.615850e-47 |
| Msa0125100 | Msa1242220 | 0.820880 | 5.430192e-53 | -8.615850e-47 |
| Msa0125100 | Msa1242230 | 0.801249 | 9.843068e-49 | -8.615850e-47 |
| Msa0125100 | Msa1271300 | 0.807251 | 5.536986e-50 | -8.615850e-47 |
| Msa0125100 | Msa1278840 | 0.808350 | 3.233923e-50 | -8.615850e-47 |
| Msa0125100 | Msa1287440 | 0.800282 | 1.550338e-48 | -8.615850e-47 |
| Msa0125100 | Msa1318240 | 0.802198 | 6.284776e-49 | -8.615850e-47 |
| Msa0125100 | Msa1322890 | 0.833322 | 5.700535e-56 | -8.615850e-47 |
| Msa0125100 | Msa1324550 | 0.804031 | 2.625424e-49 | -8.615850e-47 |
| Msa0125100 | Msa1392260 | 0.825367 | 4.871649e-54 | -8.615850e-47 |
| Msa0125100 | Msa1438250 | 0.808131 | 3.600881e-50 | -8.615850e-47 |
| Msa0125100 | Msa1464160 | 0.850174 | 2.013171e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125100 | MtrunA17_Chr1g0186841 | 98.659 | 671 | 9 | 0 | 1 | 671 | 1 | 671 | 0.0 | 1360 |
| Msa0125100 | MtrunA17_Chr1g0186851 | 58.982 | 668 | 266 | 5 | 9 | 671 | 5 | 669 | 0.0 | 813 |
| Msa0125100 | MtrunA17_Chr1g0186861 | 58.154 | 650 | 265 | 5 | 18 | 663 | 17 | 663 | 0.0 | 764 |
| Msa0125100 | MtrunA17_Chr1g0187041 | 55.539 | 668 | 289 | 6 | 1 | 664 | 1 | 664 | 0.0 | 734 |
| Msa0125100 | MtrunA17_Chr1g0186911 | 57.801 | 564 | 233 | 4 | 102 | 663 | 1 | 561 | 0.0 | 658 |
| Msa0125100 | MtrunA17_Chr1g0165791 | 38.416 | 669 | 387 | 11 | 20 | 670 | 24 | 685 | 8.55e-153 | 458 |
| Msa0125100 | MtrunA17_Chr7g0226571 | 32.078 | 717 | 414 | 18 | 7 | 663 | 8 | 711 | 5.30e-107 | 340 |
| Msa0125100 | MtrunA17_Chr1g0186981 | 34.104 | 692 | 385 | 22 | 6 | 668 | 19 | 668 | 8.07e-105 | 333 |
| Msa0125100 | MtrunA17_Chr1g0187001 | 33.383 | 677 | 390 | 18 | 13 | 667 | 3 | 640 | 1.38e-104 | 332 |
| Msa0125100 | MtrunA17_Chr8g0381301 | 32.521 | 698 | 402 | 20 | 23 | 662 | 17 | 703 | 1.26e-102 | 328 |
| Msa0125100 | MtrunA17_Chr3g0116601 | 31.753 | 696 | 410 | 18 | 19 | 661 | 21 | 704 | 4.31e-101 | 324 |
| Msa0125100 | MtrunA17_Chr1g0186991 | 33.333 | 672 | 382 | 22 | 21 | 662 | 31 | 666 | 3.14e-99 | 318 |
| Msa0125100 | MtrunA17_Chr1g0186901 | 62.069 | 87 | 31 | 1 | 18 | 102 | 17 | 103 | 1.93e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125100 | AT3G01680.1 | 31.224 | 711 | 406 | 21 | 23 | 664 | 34 | 730 | 1.95e-97 | 316 |
| Msa0125100 | AT3G01670.1 | 26.554 | 708 | 430 | 20 | 23 | 661 | 134 | 820 | 1.52e-61 | 220 |
| Msa0125100 | AT3G01670.2 | 26.554 | 708 | 430 | 20 | 23 | 661 | 158 | 844 | 2.20e-61 | 220 |
| Msa0125100 | AT1G67790.1 | 23.176 | 699 | 431 | 28 | 24 | 659 | 9 | 664 | 5.11e-35 | 141 |
Find 133 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCATTTGCACTTGAATT+TGG | 0.156452 | 1_3:-53348045 | Msa0125100:CDS |
| AAATTCCTGTTGATGTTTAC+TGG | 0.193634 | 1_3:-53347780 | Msa0125100:CDS |
| AAAACCTCGTAAGTCGATTT+TGG | 0.196891 | 1_3:-53344741 | Msa0125100:CDS |
| TTCCATTTGATCAAGTCTTA+TGG | 0.239151 | 1_3:-53345477 | Msa0125100:CDS |
| GATTGAATTTATACTTGAAT+TGG | 0.276333 | 1_3:-53347863 | Msa0125100:CDS |
| TTGTGTCATACCTATCATTA+AGG | 0.284079 | 1_3:+53347836 | None:intergenic |
| CTTGAAATTCCTATTGTTGC+TGG | 0.287322 | 1_3:-53344445 | Msa0125100:CDS |
| TGGTCATCAGACATGGTTAA+TGG | 0.290518 | 1_3:+53348874 | None:intergenic |
| TTACTGGGTCTTGTGGTCTT+TGG | 0.296308 | 1_3:-53344297 | Msa0125100:three_prime_UTR |
| CATGTCTGATGACCAGATTT+TGG | 0.311388 | 1_3:-53348866 | Msa0125100:CDS |
| CACAAAGGTTGTTCCTGCTT+TGG | 0.316333 | 1_3:-53347818 | Msa0125100:CDS |
| TATCACTGAGCTTAATAGTT+TGG | 0.318395 | 1_3:-53347905 | Msa0125100:CDS |
| ATGAACAATACAAGATTGTT+TGG | 0.318857 | 1_3:-53345695 | Msa0125100:CDS |
| CAATGCAAATGCAAAACATT+AGG | 0.320284 | 1_3:-53344338 | Msa0125100:exon |
| CACTTGAATTTGGAGAGTTC+TGG | 0.324265 | 1_3:-53348035 | Msa0125100:CDS |
| AATTGGATTACCTTAATGAT+AGG | 0.331280 | 1_3:-53347846 | Msa0125100:CDS |
| CACAGTGGTGAACTAAAATT+CGG | 0.342006 | 1_3:+53348601 | None:intergenic |
| ATTTCATCATCCATTGTAAA+GGG | 0.342752 | 1_3:+53345441 | None:intergenic |
| AATGCAAATGCAAAACATTA+GGG | 0.352870 | 1_3:-53344337 | Msa0125100:exon |
| AATGTGAGGTGGAATAAAAT+TGG | 0.354807 | 1_3:+53343924 | None:intergenic |
| CTCAGAAGAAATTGACTTCA+AGG | 0.363511 | 1_3:+53348576 | None:intergenic |
| CTTACCAATGTGGAAATGTT+GGG | 0.364875 | 1_3:+53345366 | None:intergenic |
| TTTCAGCAAAGCCACAGATT+TGG | 0.367784 | 1_3:+53347978 | None:intergenic |
| GTGGTCTTTGGTTCGAGACT+TGG | 0.370433 | 1_3:-53344285 | Msa0125100:three_prime_UTR |
| GTGGTGTAGTCTTGAAGCTT+TGG | 0.376393 | 1_3:-53344100 | Msa0125100:three_prime_UTR |
| GTAACAGTTTCTTAAGCTCT+TGG | 0.377322 | 1_3:+53347268 | None:intergenic |
| GTGGGACATTCAGAACCTTT+TGG | 0.379546 | 1_3:-53344211 | Msa0125100:three_prime_UTR |
| AGTAAATTTGATCCAAAATC+TGG | 0.381034 | 1_3:+53348854 | None:intergenic |
| TGCTGCCATTGTTACTCAGT+TGG | 0.397237 | 1_3:-53347743 | Msa0125100:CDS |
| GTGAACTAAAATTCGGGATA+AGG | 0.403542 | 1_3:+53348608 | None:intergenic |
| GTTCCTCAGCTGCTTTATGA+TGG | 0.405362 | 1_3:-53347192 | Msa0125100:CDS |
| TCAAGTTCATTAATGAAGAA+TGG | 0.407316 | 1_3:-53345566 | Msa0125100:CDS |
| CTGTGGCTGAATTTGAGAAA+TGG | 0.418335 | 1_3:-53344555 | Msa0125100:CDS |
| GATCAAGTCTTATGGAATCA+AGG | 0.421741 | 1_3:-53345469 | Msa0125100:CDS |
| GAATTCAAAAGGACAGGAAC+TGG | 0.425070 | 1_3:-53345416 | Msa0125100:CDS |
| TCCATGGTGCTAGGACAATC+AGG | 0.433171 | 1_3:+53344397 | None:intergenic |
| GGTAACTTTCCAGCAACAAT+AGG | 0.436825 | 1_3:+53344436 | None:intergenic |
| GGTCATCAGACATGGTTAAT+GGG | 0.438624 | 1_3:+53348875 | None:intergenic |
| CAGCAACAATAGGAATTTCA+AGG | 0.438861 | 1_3:+53344446 | None:intergenic |
| TATTTCATCATCCATTGTAA+AGG | 0.440057 | 1_3:+53345440 | None:intergenic |
| ATAGTCCAGTAAACATCAAC+AGG | 0.440292 | 1_3:+53347775 | None:intergenic |
| GTGTGAAAGCTTGTTCAGTA+TGG | 0.441244 | 1_3:+53348101 | None:intergenic |
| TTCCATAAGACTTGATCAAA+TGG | 0.441990 | 1_3:+53345475 | None:intergenic |
| AGCACCACTGTTATTTCAGT+TGG | 0.443068 | 1_3:+53347240 | None:intergenic |
| CAAGTTCATTAATGAAGAAT+GGG | 0.444482 | 1_3:-53345565 | Msa0125100:CDS |
| TGCTTGCTCCAAGCTTACTT+TGG | 0.448220 | 1_3:+53348642 | None:intergenic |
| TCTCAATCTCACCAGCTGAT+AGG | 0.452782 | 1_3:+53348902 | None:intergenic |
| TTATGTGCAATTTCCTCACT+TGG | 0.459503 | 1_3:+53348135 | None:intergenic |
| AACTGGATTGTATCTGTTGT+AGG | 0.459816 | 1_3:-53345399 | Msa0125100:CDS |
| AAGAGTACCTTTGATGATGT+TGG | 0.461297 | 1_3:+53348933 | None:intergenic |
| TGTGCAATTTCCTCACTTGG+TGG | 0.462178 | 1_3:+53348138 | None:intergenic |
| ACTTACCAATGTGGAAATGT+TGG | 0.463912 | 1_3:+53345365 | None:intergenic |
| GAATTGCTGCAGGCTTTGCT+AGG | 0.467942 | 1_3:+53347944 | None:intergenic |
| TCTTTAACGAGCTAGCACTA+TGG | 0.474415 | 1_3:-53348956 | Msa0125100:intron |
| AGCAGCTGAGGAACACCCTT+GGG | 0.476113 | 1_3:+53347201 | None:intergenic |
| AAAGATGTTGTTATCAAGAA+GGG | 0.481066 | 1_3:-53344532 | Msa0125100:CDS |
| ACAAGCTTTCACACTATGAC+TGG | 0.487294 | 1_3:-53348092 | Msa0125100:CDS |
| AAGCAAGAACTTTCCCACTA+TGG | 0.489618 | 1_3:-53347568 | Msa0125100:CDS |
| TGAACTAAAATTCGGGATAA+GGG | 0.496533 | 1_3:+53348609 | None:intergenic |
| ATGAAAATCTCCATGGTGCT+AGG | 0.497376 | 1_3:+53344388 | None:intergenic |
| TGATGAAATAAGAATTCAAA+AGG | 0.499915 | 1_3:-53345427 | Msa0125100:CDS |
| TCGTTCCATCCTTCGACGAT+TGG | 0.501165 | 1_3:+53345669 | None:intergenic |
| ACAGGGTACCAAAGTAAGCT+TGG | 0.502353 | 1_3:-53348650 | Msa0125100:intron |
| CTTGAAGTCAATTTCTTCTG+AGG | 0.504447 | 1_3:-53348575 | Msa0125100:intron |
| GAAAGATGTTGTTATCAAGA+AGG | 0.504611 | 1_3:-53344533 | Msa0125100:CDS |
| ACGGCGGTCATGACAAAGAA+TGG | 0.506245 | 1_3:-53344864 | Msa0125100:CDS |
| CATTTGCATTGCTCTTGTTG+TGG | 0.511127 | 1_3:+53344350 | None:intergenic |
| AAAGATACGAACCGTAGTCT+TGG | 0.515674 | 1_3:+53347164 | None:intergenic |
| GAGATATAATTGTGTTGTGT+TGG | 0.516264 | 1_3:+53349011 | None:intergenic |
| TATTAAGCTCAGTGATAGCT+TGG | 0.519222 | 1_3:+53347911 | None:intergenic |
| TTGCATACTTAGTGAACTGT+TGG | 0.520031 | 1_3:+53344839 | None:intergenic |
| GGATTCCAATCGTCGAAGGA+TGG | 0.528389 | 1_3:-53345674 | Msa0125100:CDS |
| CAAGGCTTTCCCCTTTACAA+TGG | 0.529512 | 1_3:-53345451 | Msa0125100:CDS |
| CAACAGATGGTCCTTTGCTA+AGG | 0.530605 | 1_3:+53344611 | None:intergenic |
| AAATAAGAATTCAAAAGGAC+AGG | 0.531992 | 1_3:-53345422 | Msa0125100:CDS |
| TTTGTGGTGTTTAGTCCTCA+AGG | 0.535506 | 1_3:-53345522 | Msa0125100:CDS |
| CAGAACGTCGAAAACATAGC+TGG | 0.541431 | 1_3:-53345591 | Msa0125100:CDS |
| GTCAACATAAAAGAGTTCAA+TGG | 0.542195 | 1_3:+53344774 | None:intergenic |
| TGTTTCTACTCTAGATGTCA+CGG | 0.542607 | 1_3:-53345766 | Msa0125100:CDS |
| GAAAATGTGCTTGTTCTGCT+CGG | 0.546952 | 1_3:+53344891 | None:intergenic |
| ATGAGTGACACGAGCAACAT+TGG | 0.547153 | 1_3:+53344480 | None:intergenic |
| CTTAAGACTCTCCTATCAGC+TGG | 0.547460 | 1_3:-53348913 | Msa0125100:CDS |
| AGTTGCATCGTTTGCAAGAG+CGG | 0.549462 | 1_3:+53344816 | None:intergenic |
| CATTGTTGACAGTGTTGTGC+AGG | 0.556795 | 1_3:-53348749 | Msa0125100:intron |
| GCTGCAGGCTTTGCTAGGAT+CGG | 0.562793 | 1_3:+53347949 | None:intergenic |
| TGGCGTGGAACATAACCAAA+AGG | 0.564380 | 1_3:+53344196 | None:intergenic |
| GTTTGGATTCCAATCGTCGA+AGG | 0.569856 | 1_3:-53345678 | Msa0125100:CDS |
| AAGCAGCTGAGGAACACCCT+TGG | 0.571000 | 1_3:+53347200 | None:intergenic |
| CAATGTGTGTTGAACGTGCA+AGG | 0.571029 | 1_3:+53348767 | None:intergenic |
| GGTGTTTAGTCCTCAAGGAA+AGG | 0.573715 | 1_3:-53345517 | Msa0125100:CDS |
| CGAAAATTTACTTACCAATG+TGG | 0.576128 | 1_3:+53345356 | None:intergenic |
| ACAGTGGTGAACTAAAATTC+GGG | 0.577031 | 1_3:+53348602 | None:intergenic |
| TCATATGCAAGCTCCAAAGC+AGG | 0.578263 | 1_3:+53347805 | None:intergenic |
| CAAAATCTGGTCATCAGACA+TGG | 0.578319 | 1_3:+53348867 | None:intergenic |
| TTGTGTTGAACCTTTCCTTG+AGG | 0.579579 | 1_3:+53345507 | None:intergenic |
| TGACCCCAACATTTCCACAT+TGG | 0.582734 | 1_3:-53345370 | Msa0125100:intron |
| TGTGTCACTGTGGACATGTG+TGG | 0.587756 | 1_3:+53348831 | None:intergenic |
| AAAGCCACAGATTTGGCAAG+TGG | 0.592499 | 1_3:+53347985 | None:intergenic |
| GTGCAAGGGTATTCTGAGCA+AGG | 0.592657 | 1_3:+53348782 | None:intergenic |
| CAAGCTTTCACACTATGACT+GGG | 0.595446 | 1_3:-53348091 | Msa0125100:CDS |
| TTTCATCATCCATTGTAAAG+GGG | 0.599778 | 1_3:+53345442 | None:intergenic |
| TGATGGTGCTACCAAGACTA+CGG | 0.600087 | 1_3:-53347175 | Msa0125100:intron |
| TGACCACTCAAAACAACAGA+TGG | 0.602962 | 1_3:+53344598 | None:intergenic |
| ACGGTCTGTCGTCAACAGAT+AGG | 0.603134 | 1_3:-53347502 | Msa0125100:intron |
| TTACCAATGTGGAAATGTTG+GGG | 0.606447 | 1_3:+53345367 | None:intergenic |
| TGCAAGGGTATTCTGAGCAA+GGG | 0.608420 | 1_3:+53348783 | None:intergenic |
| GAGTAAGATGCCATGGTATG+TGG | 0.608793 | 1_3:-53345616 | Msa0125100:CDS |
| CACTCCAAAATCGACTTACG+AGG | 0.610640 | 1_3:+53344737 | None:intergenic |
| GTCATGCAAGCCACCAAGTG+AGG | 0.613274 | 1_3:-53348148 | Msa0125100:CDS |
| CAAAACATTAGGGTTTGACG+TGG | 0.614141 | 1_3:-53344327 | Msa0125100:exon |
| ATAGCTGATGAAAATCTCCA+TGG | 0.615992 | 1_3:+53344381 | None:intergenic |
| AAGCCACAGATTTGGCAAGT+GGG | 0.620286 | 1_3:+53347986 | None:intergenic |
| GCAATCCAACTGAGTAACAA+TGG | 0.628416 | 1_3:+53347738 | None:intergenic |
| AGACCCACTTGCCAAATCTG+TGG | 0.631402 | 1_3:-53347989 | Msa0125100:CDS |
| AAACTTACGATTCAGTGATG+AGG | 0.634674 | 1_3:+53347716 | None:intergenic |
| TCCTGATTGTCCTAGCACCA+TGG | 0.635274 | 1_3:-53344398 | Msa0125100:CDS |
| GCACCATCATAAAGCAGCTG+AGG | 0.635564 | 1_3:+53347189 | None:intergenic |
| CGTGATTTACGCTCAATGTG+AGG | 0.636717 | 1_3:+53343910 | None:intergenic |
| GATTTACGCTCAATGTGAGG+TGG | 0.639605 | 1_3:+53343913 | None:intergenic |
| GGTTGGGCTCTCCTTAGCAA+AGG | 0.640640 | 1_3:-53344622 | Msa0125100:CDS |
| ACTATGGCCAACATCATCAA+AGG | 0.645334 | 1_3:-53348940 | Msa0125100:CDS |
| ACGTTCTGCACCACATACCA+TGG | 0.645434 | 1_3:+53345606 | None:intergenic |
| TAGACTGAGGAAGCAGATCA+CGG | 0.645853 | 1_3:-53347521 | Msa0125100:CDS |
| GATCTCGTGAATAAGAGTGT+GGG | 0.653673 | 1_3:-53344229 | Msa0125100:three_prime_UTR |
| TGATCTCGTGAATAAGAGTG+TGG | 0.660825 | 1_3:-53344230 | Msa0125100:three_prime_UTR |
| TCTGCTTCCTCAGTCTACTG+AGG | 0.663997 | 1_3:+53347527 | None:intergenic |
| TAATGATAGGTATGACACAA+AGG | 0.667392 | 1_3:-53347833 | Msa0125100:CDS |
| TACAACAATTCTCAAAACTG+TGG | 0.669361 | 1_3:-53344572 | Msa0125100:CDS |
| AATGTGTGTTGAACGTGCAA+GGG | 0.673789 | 1_3:+53348768 | None:intergenic |
| AACTCCAACTGAAATAACAG+TGG | 0.694056 | 1_3:-53347244 | Msa0125100:CDS |
| ACATCATCCTCAGTAGACTG+AGG | 0.697742 | 1_3:-53347534 | Msa0125100:CDS |
| ATTGACTTCAAGGTGCACAG+TGG | 0.759523 | 1_3:+53348586 | None:intergenic |
| TTCTACTCTAGATGTCACGG+AGG | 0.776640 | 1_3:-53345763 | Msa0125100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAGGATATTTAATTTAA+AGG | + | chr1_3:53344239-53344258 | None:intergenic | 10.0% |
| !! | ATAATAAATAAACAAAGTAA+AGG | + | chr1_3:53345533-53345552 | None:intergenic | 10.0% |
| !!! | AAATTTCTAATATTTTTCTT+TGG | + | chr1_3:53346096-53346115 | None:intergenic | 10.0% |
| !!! | TTTAATTAAAAAGTATTATG+TGG | - | chr1_3:53346552-53346571 | Msa0125100:intron | 10.0% |
| !! | TCATAACTATTATGAATTAA+AGG | + | chr1_3:53344255-53344274 | None:intergenic | 15.0% |
| !! | AATATAAATTAATGCTAATG+TGG | - | chr1_3:53345607-53345626 | Msa0125100:CDS | 15.0% |
| !! | TACATATATTATTTCAGATA+CGG | - | chr1_3:53345630-53345649 | Msa0125100:CDS | 15.0% |
| !! | AGAAAAATATTAGAAATTTG+TGG | - | chr1_3:53346097-53346116 | Msa0125100:intron | 15.0% |
| !! | TAAACATAAATTAAATCATG+TGG | - | chr1_3:53346406-53346425 | Msa0125100:intron | 15.0% |
| !! | ATTGAAATTACAATATTGAT+AGG | - | chr1_3:53346789-53346808 | Msa0125100:intron | 15.0% |
| !! | TAAATTCTAAATGAAATTGA+TGG | - | chr1_3:53346832-53346851 | Msa0125100:intron | 15.0% |
| !! | AAATTAAGAGCTAAATAATA+TGG | + | chr1_3:53347077-53347096 | None:intergenic | 15.0% |
| !!! | TTACAATCATATTTTGATTT+TGG | - | chr1_3:53347851-53347870 | Msa0125100:CDS | 15.0% |
| !!! | TAATAGTTATGAATTTTGAC+AGG | - | chr1_3:53344263-53344282 | Msa0125100:three_prime_UTR | 20.0% |
| !!! | AATAGTTATGAATTTTGACA+GGG | - | chr1_3:53344264-53344283 | Msa0125100:three_prime_UTR | 20.0% |
| !! | GATTGAATTTATACTTGAAT+TGG | - | chr1_3:53345068-53345087 | Msa0125100:intron | 20.0% |
| !! | TTTCAAAGAACTTATCAATT+TGG | - | chr1_3:53346301-53346320 | Msa0125100:intron | 20.0% |
| !!! | TGCTTTTAAACTTTTTTTGT+TGG | + | chr1_3:53346470-53346489 | None:intergenic | 20.0% |
| !!! | AGATTTTTAACTTGATTACT+TGG | + | chr1_3:53346643-53346662 | None:intergenic | 20.0% |
| !! | AAGTAATCAAGTTAAAAATC+TGG | - | chr1_3:53346642-53346661 | Msa0125100:intron | 20.0% |
| !!! | TAATTTACAAAAAGTATGTG+TGG | + | chr1_3:53346710-53346729 | None:intergenic | 20.0% |
| !! | AAAAATTGTTTCAAACATGT+AGG | + | chr1_3:53346734-53346753 | None:intergenic | 20.0% |
| !! | AAAATAAATGAGAAGAGAAA+AGG | + | chr1_3:53346884-53346903 | None:intergenic | 20.0% |
| !! | TTTGAGGAAAAAATATTTAG+AGG | + | chr1_3:53347012-53347031 | None:intergenic | 20.0% |
| !! | TGATGAAATAAGAATTCAAA+AGG | - | chr1_3:53347504-53347523 | Msa0125100:CDS | 20.0% |
| !!! | ATGTAAAGAACGTTAAATTT+TGG | - | chr1_3:53347636-53347655 | Msa0125100:intron | 20.0% |
| !!! | TGTAAAGAACGTTAAATTTT+GGG | - | chr1_3:53347637-53347656 | Msa0125100:intron | 20.0% |
| !! | TTTCATGAAATTTACATGTT+TGG | + | chr1_3:53347731-53347750 | None:intergenic | 20.0% |
| !!! | TCTTTATTTTACAACATAAG+TGG | + | chr1_3:53348758-53348777 | None:intergenic | 20.0% |
| ! | AGTAAATTTGATCCAAAATC+TGG | + | chr1_3:53344080-53344099 | None:intergenic | 25.0% |
| !!! | TGTGTATGATGTTTAAGTTT+TGG | + | chr1_3:53344442-53344461 | None:intergenic | 25.0% |
| ! | AAACTTAAACATCATACACA+TGG | - | chr1_3:53344442-53344461 | Msa0125100:CDS | 25.0% |
| ! | AATTGGATTACCTTAATGAT+AGG | - | chr1_3:53345085-53345104 | Msa0125100:intron | 25.0% |
| ! | AAAATGAGTACAAAACTTTG+TGG | - | chr1_3:53345865-53345884 | Msa0125100:intron | 25.0% |
| !!! | TAGAAAAGTTGATATCGATT+TGG | - | chr1_3:53346265-53346284 | Msa0125100:intron | 25.0% |
| ! | TGAATTCCACAAACTTTAAA+TGG | + | chr1_3:53346435-53346454 | None:intergenic | 25.0% |
| !! | GTTTATTATGGAGTTTTCAA+CGG | + | chr1_3:53346610-53346629 | None:intergenic | 25.0% |
| !!! | GCTTTTTTTCATTTTTCTCT+TGG | + | chr1_3:53346967-53346986 | None:intergenic | 25.0% |
| !!! | TAGAGGATTTTGTTTTTTTG+AGG | + | chr1_3:53347028-53347047 | None:intergenic | 25.0% |
| ! | ATGAACAATACAAGATTGTT+TGG | - | chr1_3:53347236-53347255 | Msa0125100:CDS | 25.0% |
| !! | GCAAGAAATTCGATATTTTA+AGG | - | chr1_3:53347293-53347312 | Msa0125100:intron | 25.0% |
| ! | TCAAGTTCATTAATGAAGAA+TGG | - | chr1_3:53347365-53347384 | Msa0125100:intron | 25.0% |
| ! | CAAGTTCATTAATGAAGAAT+GGG | - | chr1_3:53347366-53347385 | Msa0125100:intron | 25.0% |
| ! | ATTTCATCATCCATTGTAAA+GGG | + | chr1_3:53347493-53347512 | None:intergenic | 25.0% |
| ! | TATTTCATCATCCATTGTAA+AGG | + | chr1_3:53347494-53347513 | None:intergenic | 25.0% |
| ! | AAATAAGAATTCAAAAGGAC+AGG | - | chr1_3:53347509-53347528 | Msa0125100:CDS | 25.0% |
| !!! | ATCAGTTGTTTTGTGAATTT+TGG | + | chr1_3:53348241-53348260 | None:intergenic | 25.0% |
| ! | TTGTCTTACAAAAATGAAAC+TGG | - | chr1_3:53348288-53348307 | Msa0125100:intron | 25.0% |
| ! | TTACAAAAATGAAACTGGTT+GGG | - | chr1_3:53348293-53348312 | Msa0125100:intron | 25.0% |
| ! | AATGCAAATGCAAAACATTA+GGG | - | chr1_3:53348594-53348613 | Msa0125100:CDS | 25.0% |
| ! | GCGTCTTAAAAAATGTTATT+GGG | - | chr1_3:53348668-53348687 | Msa0125100:intron | 25.0% |
| ! | CTTTGTAAACCCAAAAATAA+TGG | - | chr1_3:53348779-53348798 | Msa0125100:CDS | 25.0% |
| !!! | AACACAACACCATTATTTTT+GGG | + | chr1_3:53348791-53348810 | None:intergenic | 25.0% |
| GAGATATAATTGTGTTGTGT+TGG | + | chr1_3:53343923-53343942 | None:intergenic | 30.0% | |
| TGAACTAAAATTCGGGATAA+GGG | + | chr1_3:53344325-53344344 | None:intergenic | 30.0% | |
| TATCACTGAGCTTAATAGTT+TGG | - | chr1_3:53345026-53345045 | Msa0125100:intron | 30.0% | |
| TTGTGTCATACCTATCATTA+AGG | + | chr1_3:53345098-53345117 | None:intergenic | 30.0% | |
| TAATGATAGGTATGACACAA+AGG | - | chr1_3:53345098-53345117 | Msa0125100:intron | 30.0% | |
| AAATTCCTGTTGATGTTTAC+TGG | - | chr1_3:53345151-53345170 | Msa0125100:intron | 30.0% | |
| GTAAATTTCTCGATCTCTAA+CGG | - | chr1_3:53345455-53345474 | Msa0125100:CDS | 30.0% | |
| AGTATGAAGTTACAGTTGTA+AGG | + | chr1_3:53345482-53345501 | None:intergenic | 30.0% | |
| ATTATTATGACACGTGTTTC+TGG | + | chr1_3:53346158-53346177 | None:intergenic | 30.0% | |
| AGAAACACGTGTCATAATAA+TGG | - | chr1_3:53346157-53346176 | Msa0125100:intron | 30.0% | |
| GAAACACGTGTCATAATAAT+GGG | - | chr1_3:53346158-53346177 | Msa0125100:intron | 30.0% | |
| ! | TCTGCTTTCTTTCTTTTTCT+TGG | + | chr1_3:53346242-53346261 | None:intergenic | 30.0% |
| ! | TGGTTTCCATTTAAAGTTTG+TGG | - | chr1_3:53346426-53346445 | Msa0125100:intron | 30.0% |
| !!! | GGTGACTTTTTGGTTTATTA+TGG | + | chr1_3:53346622-53346641 | None:intergenic | 30.0% |
| !! | TTGATTACTTGGTGACTTTT+TGG | + | chr1_3:53346632-53346651 | None:intergenic | 30.0% |
| !! | TTTTTCATTTTTCTCTTGGC+TGG | + | chr1_3:53346963-53346982 | None:intergenic | 30.0% |
| !! | ATTAATTTGTTAAACCGTGC+AGG | - | chr1_3:53347099-53347118 | Msa0125100:intron | 30.0% |
| CAAAAAGAAGTCTATGTTTG+TGG | - | chr1_3:53347393-53347412 | Msa0125100:intron | 30.0% | |
| TTCCATTTGATCAAGTCTTA+TGG | - | chr1_3:53347454-53347473 | Msa0125100:intron | 30.0% | |
| TTCCATAAGACTTGATCAAA+TGG | + | chr1_3:53347459-53347478 | None:intergenic | 30.0% | |
| TTTCATCATCCATTGTAAAG+GGG | + | chr1_3:53347492-53347511 | None:intergenic | 30.0% | |
| CGAAAATTTACTTACCAATG+TGG | + | chr1_3:53347578-53347597 | None:intergenic | 30.0% | |
| ! | TGGTAAGTAAATTTTCGACT+TGG | - | chr1_3:53347581-53347600 | Msa0125100:intron | 30.0% |
| ! | AACAAGCACATTTTCTTCTA+CGG | - | chr1_3:53348048-53348067 | Msa0125100:CDS | 30.0% |
| GTCAACATAAAAGAGTTCAA+TGG | + | chr1_3:53348160-53348179 | None:intergenic | 30.0% | |
| ! | TGAACTCTTTTATGTTGACA+AGG | - | chr1_3:53348161-53348180 | Msa0125100:intron | 30.0% |
| CTTACAAAAATGAAACTGGT+TGG | - | chr1_3:53348292-53348311 | Msa0125100:intron | 30.0% | |
| TACAACAATTCTCAAAACTG+TGG | - | chr1_3:53348359-53348378 | Msa0125100:intron | 30.0% | |
| CAATGCAAATGCAAAACATT+AGG | - | chr1_3:53348593-53348612 | Msa0125100:CDS | 30.0% | |
| GGCGTCTTAAAAAATGTTAT+TGG | - | chr1_3:53348667-53348686 | Msa0125100:intron | 30.0% | |
| ! | CAACACAACACCATTATTTT+TGG | + | chr1_3:53348792-53348811 | None:intergenic | 30.0% |
| !!! | GTGTTGTTTTCTATGTATTG+TGG | - | chr1_3:53348806-53348825 | Msa0125100:CDS | 30.0% |
| ! | TTTTCTATGTATTGTGGTTG+TGG | - | chr1_3:53348812-53348831 | Msa0125100:CDS | 30.0% |
| AATGTGAGGTGGAATAAAAT+TGG | + | chr1_3:53349010-53349029 | None:intergenic | 30.0% | |
| !! | AAGAGTACCTTTGATGATGT+TGG | + | chr1_3:53344001-53344020 | None:intergenic | 35.0% |
| !! | CATCAAATTTTGTGTCACTG+TGG | + | chr1_3:53344113-53344132 | None:intergenic | 35.0% |
| GTGAACTAAAATTCGGGATA+AGG | + | chr1_3:53344326-53344345 | None:intergenic | 35.0% | |
| ACAGTGGTGAACTAAAATTC+GGG | + | chr1_3:53344332-53344351 | None:intergenic | 35.0% | |
| CACAGTGGTGAACTAAAATT+CGG | + | chr1_3:53344333-53344352 | None:intergenic | 35.0% | |
| ! | CTCAGAAGAAATTGACTTCA+AGG | + | chr1_3:53344358-53344377 | None:intergenic | 35.0% |
| CTTGAAGTCAATTTCTTCTG+AGG | - | chr1_3:53344356-53344375 | Msa0125100:CDS | 35.0% | |
| TGTTACACAATTTCCTCACT+TGG | + | chr1_3:53344679-53344698 | None:intergenic | 35.0% | |
| TTATGTGCAATTTCCTCACT+TGG | + | chr1_3:53344799-53344818 | None:intergenic | 35.0% | |
| TCTGCATTTGCACTTGAATT+TGG | - | chr1_3:53344886-53344905 | Msa0125100:CDS | 35.0% | |
| TATTAAGCTCAGTGATAGCT+TGG | + | chr1_3:53345023-53345042 | None:intergenic | 35.0% | |
| ATAGTCCAGTAAACATCAAC+AGG | + | chr1_3:53345159-53345178 | None:intergenic | 35.0% | |
| AAACTTACGATTCAGTGATG+AGG | + | chr1_3:53345218-53345237 | None:intergenic | 35.0% | |
| ! | GTTGATCTTTTGACCATAGT+GGG | + | chr1_3:53345379-53345398 | None:intergenic | 35.0% |
| ! | TGTTGATCTTTTGACCATAG+TGG | + | chr1_3:53345380-53345399 | None:intergenic | 35.0% |
| !! | AAAGGTGTTTGAATCCTCAT+CGG | + | chr1_3:53345515-53345534 | None:intergenic | 35.0% |
| GTAACAGTTTCTTAAGCTCT+TGG | + | chr1_3:53345666-53345685 | None:intergenic | 35.0% | |
| AACTCCAACTGAAATAACAG+TGG | - | chr1_3:53345687-53345706 | Msa0125100:CDS | 35.0% | |
| ! | TTCGTTTCTGATTTTTCCCA+AGG | - | chr1_3:53345714-53345733 | Msa0125100:CDS | 35.0% |
| ! | TCGTTTCTGATTTTTCCCAA+GGG | - | chr1_3:53345715-53345734 | Msa0125100:CDS | 35.0% |
| GAAAAGGTAACTTCTATGCA+AGG | + | chr1_3:53346868-53346887 | None:intergenic | 35.0% | |
| AACATTAATGTCAACCTGCA+CGG | + | chr1_3:53347116-53347135 | None:intergenic | 35.0% | |
| ! | TGTTTCTACTCTAGATGTCA+CGG | - | chr1_3:53347165-53347184 | Msa0125100:intron | 35.0% |
| !! | TTTTAAGGAGTAAGATGCCA+TGG | - | chr1_3:53347308-53347327 | Msa0125100:intron | 35.0% |
| ! | GATCAAGTCTTATGGAATCA+AGG | - | chr1_3:53347462-53347481 | Msa0125100:intron | 35.0% |
| AACTGGATTGTATCTGTTGT+AGG | - | chr1_3:53347532-53347551 | Msa0125100:CDS | 35.0% | |
| TTACCAATGTGGAAATGTTG+GGG | + | chr1_3:53347567-53347586 | None:intergenic | 35.0% | |
| CTTACCAATGTGGAAATGTT+GGG | + | chr1_3:53347568-53347587 | None:intergenic | 35.0% | |
| ACTTACCAATGTGGAAATGT+TGG | + | chr1_3:53347569-53347588 | None:intergenic | 35.0% | |
| AACAACATACTGCACAACTA+TGG | + | chr1_3:53347612-53347631 | None:intergenic | 35.0% | |
| GCTTCTCTCTTTAAATCTCA+CGG | - | chr1_3:53347678-53347697 | Msa0125100:intron | 35.0% | |
| TTACAACTTCAGCAGATAGA+CGG | - | chr1_3:53347704-53347723 | Msa0125100:intron | 35.0% | |
| TGTGATTCTTCCTATAATGC+AGG | - | chr1_3:53348017-53348036 | Msa0125100:CDS | 35.0% | |
| TTGCATACTTAGTGAACTGT+TGG | + | chr1_3:53348095-53348114 | None:intergenic | 35.0% | |
| !! | AAAACCTCGTAAGTCGATTT+TGG | - | chr1_3:53348190-53348209 | Msa0125100:intron | 35.0% |
| CAGCAACAATAGGAATTTCA+AGG | + | chr1_3:53348488-53348507 | None:intergenic | 35.0% | |
| CTTGAAATTCCTATTGTTGC+TGG | - | chr1_3:53348486-53348505 | Msa0125100:intron | 35.0% | |
| ! | TCAGGACATTTTATAGTCTC+AGG | + | chr1_3:53348519-53348538 | None:intergenic | 35.0% |
| ATAGCTGATGAAAATCTCCA+TGG | + | chr1_3:53348553-53348572 | None:intergenic | 35.0% | |
| !!! | TTGACGTGGTTTTATGTTAC+TGG | - | chr1_3:53348618-53348637 | Msa0125100:CDS | 35.0% |
| !!! | TGACGTGGTTTTATGTTACT+GGG | - | chr1_3:53348619-53348638 | Msa0125100:CDS | 35.0% |
| ! | TTTTATGTTACTGGGTCTTG+TGG | - | chr1_3:53348627-53348646 | Msa0125100:CDS | 35.0% |
| ! | ATTTTACAACATAAGTGGCG+TGG | + | chr1_3:53348753-53348772 | None:intergenic | 35.0% |
| TCGTTAAAGAAGGTCTGGAT+TGG | + | chr1_3:53343965-53343984 | None:intergenic | 40.0% | |
| TAGTGCTAGCTCGTTAAAGA+AGG | + | chr1_3:53343975-53343994 | None:intergenic | 40.0% | |
| TCTTTAACGAGCTAGCACTA+TGG | - | chr1_3:53343975-53343994 | Msa0125100:three_prime_UTR | 40.0% | |
| ACTATGGCCAACATCATCAA+AGG | - | chr1_3:53343991-53344010 | Msa0125100:three_prime_UTR | 40.0% | |
| GGTCATCAGACATGGTTAAT+GGG | + | chr1_3:53344059-53344078 | None:intergenic | 40.0% | |
| TGGTCATCAGACATGGTTAA+TGG | + | chr1_3:53344060-53344079 | None:intergenic | 40.0% | |
| CAAAATCTGGTCATCAGACA+TGG | + | chr1_3:53344067-53344086 | None:intergenic | 40.0% | |
| ! | CATGTCTGATGACCAGATTT+TGG | - | chr1_3:53344065-53344084 | Msa0125100:three_prime_UTR | 40.0% |
| AATGTGTGTTGAACGTGCAA+GGG | + | chr1_3:53344166-53344185 | None:intergenic | 40.0% | |
| TACACAATTTCCTCACTTGG+TGG | + | chr1_3:53344676-53344695 | None:intergenic | 40.0% | |
| ! | GTGTGAAAGCTTGTTCAGTA+TGG | + | chr1_3:53344833-53344852 | None:intergenic | 40.0% |
| ACAAGCTTTCACACTATGAC+TGG | - | chr1_3:53344839-53344858 | Msa0125100:CDS | 40.0% | |
| CAAGCTTTCACACTATGACT+GGG | - | chr1_3:53344840-53344859 | Msa0125100:CDS | 40.0% | |
| CACTTGAATTTGGAGAGTTC+TGG | - | chr1_3:53344896-53344915 | Msa0125100:intron | 40.0% | |
| TTTCAGCAAAGCCACAGATT+TGG | + | chr1_3:53344956-53344975 | None:intergenic | 40.0% | |
| !! | CGATGTTTTTGAATTGCTGC+AGG | + | chr1_3:53345000-53345019 | None:intergenic | 40.0% |
| GCAATCCAACTGAGTAACAA+TGG | + | chr1_3:53345196-53345215 | None:intergenic | 40.0% | |
| AAGCAAGAACTTTCCCACTA+TGG | - | chr1_3:53345363-53345382 | Msa0125100:intron | 40.0% | |
| TACTACATCTGTATCCGATG+AGG | - | chr1_3:53345498-53345517 | Msa0125100:CDS | 40.0% | |
| !! | AGCACCACTGTTATTTCAGT+TGG | + | chr1_3:53345694-53345713 | None:intergenic | 40.0% |
| AAAGATACGAACCGTAGTCT+TGG | + | chr1_3:53345770-53345789 | None:intergenic | 40.0% | |
| TTTGTGGTGTTTAGTCCTCA+AGG | - | chr1_3:53347409-53347428 | Msa0125100:intron | 40.0% | |
| TTGTGTTGAACCTTTCCTTG+AGG | + | chr1_3:53347427-53347446 | None:intergenic | 40.0% | |
| GAATTCAAAAGGACAGGAAC+TGG | - | chr1_3:53347515-53347534 | Msa0125100:CDS | 40.0% | |
| AACATACTGCACAACTATGG+AGG | + | chr1_3:53347609-53347628 | None:intergenic | 40.0% | |
| GTCTATCTGCTGAAGTTGTA+AGG | + | chr1_3:53347705-53347724 | None:intergenic | 40.0% | |
| GAAAATGTGCTTGTTCTGCT+CGG | + | chr1_3:53348043-53348062 | None:intergenic | 40.0% | |
| ! | AAGCACATTTTCTTCTACGG+CGG | - | chr1_3:53348051-53348070 | Msa0125100:CDS | 40.0% |
| TGACCACTCAAAACAACAGA+TGG | + | chr1_3:53348336-53348355 | None:intergenic | 40.0% | |
| !!! | TCTGTTGTTTTGAGTGGTCA+TGG | - | chr1_3:53348336-53348355 | Msa0125100:intron | 40.0% |
| CTGTGGCTGAATTTGAGAAA+TGG | - | chr1_3:53348376-53348395 | Msa0125100:intron | 40.0% | |
| GGTAACTTTCCAGCAACAAT+AGG | + | chr1_3:53348498-53348517 | None:intergenic | 40.0% | |
| ATGAAAATCTCCATGGTGCT+AGG | + | chr1_3:53348546-53348565 | None:intergenic | 40.0% | |
| CATTTGCATTGCTCTTGTTG+TGG | + | chr1_3:53348584-53348603 | None:intergenic | 40.0% | |
| CAAAACATTAGGGTTTGACG+TGG | - | chr1_3:53348604-53348623 | Msa0125100:CDS | 40.0% | |
| TGATCTCGTGAATAAGAGTG+TGG | - | chr1_3:53348701-53348720 | Msa0125100:intron | 40.0% | |
| ! | GATCTCGTGAATAAGAGTGT+GGG | - | chr1_3:53348702-53348721 | Msa0125100:intron | 40.0% |
| CTAGCTCGTTAAAGAAGGTC+TGG | + | chr1_3:53343970-53343989 | None:intergenic | 45.0% | |
| CTTAAGACTCTCCTATCAGC+TGG | - | chr1_3:53344018-53344037 | Msa0125100:three_prime_UTR | 45.0% | |
| TCTCAATCTCACCAGCTGAT+AGG | + | chr1_3:53344032-53344051 | None:intergenic | 45.0% | |
| !! | TGCAAGGGTATTCTGAGCAA+GGG | + | chr1_3:53344151-53344170 | None:intergenic | 45.0% |
| CAATGTGTGTTGAACGTGCA+AGG | + | chr1_3:53344167-53344186 | None:intergenic | 45.0% | |
| CATTGTTGACAGTGTTGTGC+AGG | - | chr1_3:53344182-53344201 | Msa0125100:three_prime_UTR | 45.0% | |
| ! | ACAGGGTACCAAAGTAAGCT+TGG | - | chr1_3:53344281-53344300 | Msa0125100:three_prime_UTR | 45.0% |
| TGCTTGCTCCAAGCTTACTT+TGG | + | chr1_3:53344292-53344311 | None:intergenic | 45.0% | |
| ! | ATTGACTTCAAGGTGCACAG+TGG | + | chr1_3:53344348-53344367 | None:intergenic | 45.0% |
| ! | TTTTTGCAAGCCACCAAGTG+AGG | - | chr1_3:53344663-53344682 | Msa0125100:CDS | 45.0% |
| TGTGCAATTTCCTCACTTGG+TGG | + | chr1_3:53344796-53344815 | None:intergenic | 45.0% | |
| AAGCCACAGATTTGGCAAGT+GGG | + | chr1_3:53344948-53344967 | None:intergenic | 45.0% | |
| AAAGCCACAGATTTGGCAAG+TGG | + | chr1_3:53344949-53344968 | None:intergenic | 45.0% | |
| CACAAAGGTTGTTCCTGCTT+TGG | - | chr1_3:53345113-53345132 | Msa0125100:intron | 45.0% | |
| TCATATGCAAGCTCCAAAGC+AGG | + | chr1_3:53345129-53345148 | None:intergenic | 45.0% | |
| TGCTGCCATTGTTACTCAGT+TGG | - | chr1_3:53345188-53345207 | Msa0125100:intron | 45.0% | |
| ACATCATCCTCAGTAGACTG+AGG | - | chr1_3:53345397-53345416 | Msa0125100:CDS | 45.0% | |
| TAGACTGAGGAAGCAGATCA+CGG | - | chr1_3:53345410-53345429 | Msa0125100:CDS | 45.0% | |
| ! | GTTCCTCAGCTGCTTTATGA+TGG | - | chr1_3:53345739-53345758 | Msa0125100:CDS | 45.0% |
| !! | TGATGGTGCTACCAAGACTA+CGG | - | chr1_3:53345756-53345775 | Msa0125100:CDS | 45.0% |
| TTCTACTCTAGATGTCACGG+AGG | - | chr1_3:53347168-53347187 | Msa0125100:intron | 45.0% | |
| GTTTGGATTCCAATCGTCGA+AGG | - | chr1_3:53347253-53347272 | Msa0125100:CDS | 45.0% | |
| GAGTAAGATGCCATGGTATG+TGG | - | chr1_3:53347315-53347334 | Msa0125100:intron | 45.0% | |
| CAGAACGTCGAAAACATAGC+TGG | - | chr1_3:53347340-53347359 | Msa0125100:intron | 45.0% | |
| GGTGTTTAGTCCTCAAGGAA+AGG | - | chr1_3:53347414-53347433 | Msa0125100:intron | 45.0% | |
| CAAGGCTTTCCCCTTTACAA+TGG | - | chr1_3:53347480-53347499 | Msa0125100:intron | 45.0% | |
| TGACCCCAACATTTCCACAT+TGG | - | chr1_3:53347561-53347580 | Msa0125100:CDS | 45.0% | |
| ! | TGGGAGAGAAGCGATTTTAG+TGG | - | chr1_3:53347656-53347675 | Msa0125100:intron | 45.0% |
| AGTTGCATCGTTTGCAAGAG+CGG | + | chr1_3:53348118-53348137 | None:intergenic | 45.0% | |
| ! | CACTCCAAAATCGACTTACG+AGG | + | chr1_3:53348197-53348216 | None:intergenic | 45.0% |
| !! | CTCGTAAGTCGATTTTGGAG+TGG | - | chr1_3:53348195-53348214 | Msa0125100:intron | 45.0% |
| CAACAGATGGTCCTTTGCTA+AGG | + | chr1_3:53348323-53348342 | None:intergenic | 45.0% | |
| !!! | GGACCATCTGTTGTTTTGAG+TGG | - | chr1_3:53348330-53348349 | Msa0125100:intron | 45.0% |
| ATGAGTGACACGAGCAACAT+TGG | + | chr1_3:53348454-53348473 | None:intergenic | 45.0% | |
| ! | TTACTGGGTCTTGTGGTCTT+TGG | - | chr1_3:53348634-53348653 | Msa0125100:CDS | 45.0% |
| ! | GTGGGACATTCAGAACCTTT+TGG | - | chr1_3:53348720-53348739 | Msa0125100:intron | 45.0% |
| TGGCGTGGAACATAACCAAA+AGG | + | chr1_3:53348738-53348757 | None:intergenic | 45.0% | |
| ! | GTGGTGTAGTCTTGAAGCTT+TGG | - | chr1_3:53348831-53348850 | Msa0125100:CDS | 45.0% |
| !!! | ATTAATTTTATTAATTATGT+AGG | - | chr1_3:53345334-53345353 | Msa0125100:intron | 5.0% |
| !!! | TTAATTTTATTAATTATGTA+GGG | - | chr1_3:53345335-53345354 | Msa0125100:intron | 5.0% |
| !!! | ATATTTTATTTTTTGTTTTA+AGG | - | chr1_3:53345563-53345582 | Msa0125100:CDS | 5.0% |
| !!! | TATTTTATTTTTTGTTTTAA+GGG | - | chr1_3:53345564-53345583 | Msa0125100:CDS | 5.0% |
| !! | TATAAAAAAAAAAAAATTAG+AGG | + | chr1_3:53347045-53347064 | None:intergenic | 5.0% |
| ! | TGTGTCACTGTGGACATGTG+TGG | + | chr1_3:53344103-53344122 | None:intergenic | 50.0% |
| !! | GTGCAAGGGTATTCTGAGCA+AGG | + | chr1_3:53344152-53344171 | None:intergenic | 50.0% |
| AGACCCACTTGCCAAATCTG+TGG | - | chr1_3:53344942-53344961 | Msa0125100:intron | 50.0% | |
| GAATTGCTGCAGGCTTTGCT+AGG | + | chr1_3:53344990-53345009 | None:intergenic | 50.0% | |
| TCTGCTTCCTCAGTCTACTG+AGG | + | chr1_3:53345407-53345426 | None:intergenic | 50.0% | |
| ACGGTCTGTCGTCAACAGAT+AGG | - | chr1_3:53345429-53345448 | Msa0125100:CDS | 50.0% | |
| GCACCATCATAAAGCAGCTG+AGG | + | chr1_3:53345745-53345764 | None:intergenic | 50.0% | |
| GGATTCCAATCGTCGAAGGA+TGG | - | chr1_3:53347257-53347276 | Msa0125100:CDS | 50.0% | |
| TCGTTCCATCCTTCGACGAT+TGG | + | chr1_3:53347265-53347284 | None:intergenic | 50.0% | |
| ACGTTCTGCACCACATACCA+TGG | + | chr1_3:53347328-53347347 | None:intergenic | 50.0% | |
| TTCTGCTCGGCCTGCATTAT+AGG | + | chr1_3:53348030-53348049 | None:intergenic | 50.0% | |
| ACGGCGGTCATGACAAAGAA+TGG | - | chr1_3:53348067-53348086 | Msa0125100:CDS | 50.0% | |
| TCCTGATTGTCCTAGCACCA+TGG | - | chr1_3:53348533-53348552 | Msa0125100:intron | 50.0% | |
| ! | TCCATGGTGCTAGGACAATC+AGG | + | chr1_3:53348537-53348556 | None:intergenic | 50.0% |
| ! | GTGGTCTTTGGTTCGAGACT+TGG | - | chr1_3:53348646-53348665 | Msa0125100:CDS | 50.0% |
| GTCATGCAAGCCACCAAGTG+AGG | - | chr1_3:53344783-53344802 | Msa0125100:CDS | 55.0% | |
| GCTGCAGGCTTTGCTAGGAT+CGG | + | chr1_3:53344985-53345004 | None:intergenic | 55.0% | |
| AGCAGCTGAGGAACACCCTT+GGG | + | chr1_3:53345733-53345752 | None:intergenic | 55.0% | |
| AAGCAGCTGAGGAACACCCT+TGG | + | chr1_3:53345734-53345753 | None:intergenic | 55.0% | |
| GGTTGGGCTCTCCTTAGCAA+AGG | - | chr1_3:53348309-53348328 | Msa0125100:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 53343919 | 53349034 | 53343919 | ID=Msa0125100;Name=Msa0125100 |
| chr1_3 | mRNA | 53343919 | 53349034 | 53343919 | ID=Msa0125100-mRNA-1;Parent=Msa0125100;Name=Msa0125100-mRNA-1;_AED=0.10;_eAED=0.10;_QI=54|1|1|1|0.85|0.75|8|420|671 |
| chr1_3 | exon | 53343919 | 53344914 | 53343919 | ID=Msa0125100-mRNA-1:exon:16357;Parent=Msa0125100-mRNA-1 |
| chr1_3 | exon | 53345371 | 53345832 | 53345371 | ID=Msa0125100-mRNA-1:exon:16356;Parent=Msa0125100-mRNA-1 |
| chr1_3 | exon | 53347176 | 53347306 | 53347176 | ID=Msa0125100-mRNA-1:exon:16355;Parent=Msa0125100-mRNA-1 |
| chr1_3 | exon | 53347503 | 53347597 | 53347503 | ID=Msa0125100-mRNA-1:exon:16354;Parent=Msa0125100-mRNA-1 |
| chr1_3 | exon | 53347724 | 53348172 | 53347724 | ID=Msa0125100-mRNA-1:exon:16353;Parent=Msa0125100-mRNA-1 |
| chr1_3 | exon | 53348576 | 53348668 | 53348576 | ID=Msa0125100-mRNA-1:exon:16352;Parent=Msa0125100-mRNA-1 |
| chr1_3 | exon | 53348750 | 53348971 | 53348750 | ID=Msa0125100-mRNA-1:exon:16351;Parent=Msa0125100-mRNA-1 |
| chr1_3 | exon | 53348993 | 53349034 | 53348993 | ID=Msa0125100-mRNA-1:exon:16350;Parent=Msa0125100-mRNA-1 |
| chr1_3 | five_prime_UTR | 53348993 | 53349034 | 53348993 | ID=Msa0125100-mRNA-1:five_prime_utr;Parent=Msa0125100-mRNA-1 |
| chr1_3 | five_prime_UTR | 53348960 | 53348971 | 53348960 | ID=Msa0125100-mRNA-1:five_prime_utr;Parent=Msa0125100-mRNA-1 |
| chr1_3 | CDS | 53348750 | 53348959 | 53348750 | ID=Msa0125100-mRNA-1:cds;Parent=Msa0125100-mRNA-1 |
| chr1_3 | CDS | 53348576 | 53348668 | 53348576 | ID=Msa0125100-mRNA-1:cds;Parent=Msa0125100-mRNA-1 |
| chr1_3 | CDS | 53347724 | 53348172 | 53347724 | ID=Msa0125100-mRNA-1:cds;Parent=Msa0125100-mRNA-1 |
| chr1_3 | CDS | 53347503 | 53347597 | 53347503 | ID=Msa0125100-mRNA-1:cds;Parent=Msa0125100-mRNA-1 |
| chr1_3 | CDS | 53347176 | 53347306 | 53347176 | ID=Msa0125100-mRNA-1:cds;Parent=Msa0125100-mRNA-1 |
| chr1_3 | CDS | 53345371 | 53345832 | 53345371 | ID=Msa0125100-mRNA-1:cds;Parent=Msa0125100-mRNA-1 |
| chr1_3 | CDS | 53344339 | 53344914 | 53344339 | ID=Msa0125100-mRNA-1:cds;Parent=Msa0125100-mRNA-1 |
| chr1_3 | three_prime_UTR | 53343919 | 53344338 | 53343919 | ID=Msa0125100-mRNA-1:three_prime_utr;Parent=Msa0125100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
