Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514320 | XP_003589014.1 | 91.925 | 322 | 25 | 1 | 1 | 322 | 1 | 321 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514320 | sp|Q9FFJ8|LIMYB_ARATH | 24.921 | 317 | 213 | 6 | 6 | 322 | 156 | 447 | 7.81e-22 | 99.0 |
| Msa0514320 | sp|Q9FFJ8|LIMYB_ARATH | 35.135 | 111 | 71 | 1 | 20 | 130 | 2 | 111 | 3.60e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514320 | G7IB81 | 91.925 | 322 | 25 | 1 | 1 | 322 | 1 | 321 | 0.0 | 604 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021210 | Msa0514320 | 0.809094 | 2.242921e-50 | -8.615850e-47 |
| Msa0031520 | Msa0514320 | 0.931911 | 1.871410e-94 | -8.615850e-47 |
| Msa0042920 | Msa0514320 | 0.818183 | 2.238810e-52 | -8.615850e-47 |
| Msa0044330 | Msa0514320 | 0.800309 | 1.531071e-48 | -8.615850e-47 |
| Msa0089820 | Msa0514320 | 0.801844 | 7.433393e-49 | -8.615850e-47 |
| Msa0099210 | Msa0514320 | 0.804143 | 2.488243e-49 | -8.615850e-47 |
| Msa0114430 | Msa0514320 | 0.817830 | 2.690237e-52 | -8.615850e-47 |
| Msa0135660 | Msa0514320 | 0.894574 | 2.169179e-75 | -8.615850e-47 |
| Msa0195100 | Msa0514320 | 0.801556 | 8.516055e-49 | -8.615850e-47 |
| Msa0198900 | Msa0514320 | 0.813064 | 3.092115e-51 | -8.615850e-47 |
| Msa0198910 | Msa0514320 | 0.912758 | 1.349558e-83 | -8.615850e-47 |
| Msa0233080 | Msa0514320 | 0.885407 | 8.349772e-72 | -8.615850e-47 |
| Msa0236510 | Msa0514320 | -0.801957 | 7.044856e-49 | -8.615850e-47 |
| Msa0385840 | Msa0514320 | 0.819519 | 1.113045e-52 | -8.615850e-47 |
| Msa0413410 | Msa0514320 | 0.828127 | 1.068418e-54 | -8.615850e-47 |
| Msa0416650 | Msa0514320 | 0.800368 | 1.489626e-48 | -8.615850e-47 |
| Msa0444750 | Msa0514320 | -0.808287 | 3.335942e-50 | -8.615850e-47 |
| Msa0479340 | Msa0514320 | 0.803302 | 3.719497e-49 | -8.615850e-47 |
| Msa0251320 | Msa0514320 | 0.802115 | 6.537448e-49 | -8.615850e-47 |
| Msa0251640 | Msa0514320 | 0.925141 | 2.741174e-90 | -8.615850e-47 |
| Msa0278190 | Msa0514320 | 0.829650 | 4.571101e-55 | -8.615850e-47 |
| Msa0307540 | Msa0514320 | 0.806085 | 9.761731e-50 | -8.615850e-47 |
| Msa0321310 | Msa0514320 | 0.802752 | 4.833341e-49 | -8.615850e-47 |
| Msa0344690 | Msa0514320 | -0.803254 | 3.806395e-49 | -8.615850e-47 |
| Msa0350320 | Msa0514320 | -0.815628 | 8.385543e-52 | -8.615850e-47 |
| Msa0490140 | Msa0514320 | 0.942261 | 9.819706e-102 | -8.615850e-47 |
| Msa0490150 | Msa0514320 | 0.806349 | 8.589564e-50 | -8.615850e-47 |
| Msa0514320 | Msa0523940 | 0.822100 | 2.837364e-53 | -8.615850e-47 |
| Msa0514320 | Msa0545700 | 0.814353 | 1.608697e-51 | -8.615850e-47 |
| Msa0514320 | Msa0585230 | 0.808507 | 2.994197e-50 | -8.615850e-47 |
| Msa0514320 | Msa0602980 | 0.939089 | 2.282740e-99 | -8.615850e-47 |
| Msa0514320 | Msa0608160 | 0.805823 | 1.108505e-49 | -8.615850e-47 |
| Msa0514320 | Msa0615010 | 0.815805 | 7.660237e-52 | -8.615850e-47 |
| Msa0514320 | Msa0645300 | 0.936549 | 1.453055e-97 | -8.615850e-47 |
| Msa0514320 | Msa0648080 | 0.806520 | 7.904373e-50 | -8.615850e-47 |
| Msa0514320 | Msa0665020 | 0.802222 | 6.213888e-49 | -8.615850e-47 |
| Msa0514320 | Msa0701010 | 0.823317 | 1.478029e-53 | -8.615850e-47 |
| Msa0514320 | Msa0703780 | 0.815047 | 1.129171e-51 | -8.615850e-47 |
| Msa0514320 | Msa0731940 | 0.802640 | 5.098092e-49 | -8.615850e-47 |
| Msa0514320 | Msa0755180 | 0.827478 | 1.529917e-54 | -8.615850e-47 |
| Msa0514320 | Msa0766630 | 0.809903 | 1.502883e-50 | -8.615850e-47 |
| Msa0514320 | Msa0767730 | 0.802218 | 6.227238e-49 | -8.615850e-47 |
| Msa0514320 | Msa0768290 | 0.805933 | 1.050550e-49 | -8.615850e-47 |
| Msa0514320 | Msa0768370 | 0.826367 | 2.820394e-54 | -8.615850e-47 |
| Msa0514320 | Msa0773180 | 0.840182 | 1.014205e-57 | -8.615850e-47 |
| Msa0514320 | Msa0804800 | 0.805005 | 1.644413e-49 | -8.615850e-47 |
| Msa0514320 | Msa0804810 | 0.861739 | 8.299841e-64 | -8.615850e-47 |
| Msa0514320 | Msa0820850 | 0.809001 | 2.348106e-50 | -8.615850e-47 |
| Msa0514320 | Msa0831850 | 0.801447 | 8.967592e-49 | -8.615850e-47 |
| Msa0514320 | Msa0844490 | 0.835555 | 1.567663e-56 | -8.615850e-47 |
| Msa0514320 | Msa0848990 | 0.807231 | 5.592093e-50 | -8.615850e-47 |
| Msa0514320 | Msa0853520 | 0.803474 | 3.425975e-49 | -8.615850e-47 |
| Msa0514320 | Msa0857640 | 0.805335 | 1.403211e-49 | -8.615850e-47 |
| Msa0514320 | Msa0861130 | 0.806382 | 8.450886e-50 | -8.615850e-47 |
| Msa0514320 | Msa0877250 | 0.824860 | 6.419052e-54 | -8.615850e-47 |
| Msa0514320 | Msa0897330 | 0.827557 | 1.465084e-54 | -8.615850e-47 |
| Msa0514320 | Msa0899430 | 0.847728 | 9.624242e-60 | -8.615850e-47 |
| Msa0514320 | Msa0899450 | 0.844482 | 7.357947e-59 | -8.615850e-47 |
| Msa0514320 | Msa0914270 | 0.829592 | 4.721662e-55 | -8.615850e-47 |
| Msa0514320 | Msa0927380 | 0.843925 | 1.038351e-58 | -8.615850e-47 |
| Msa0514320 | Msa0936300 | 0.819365 | 1.206544e-52 | -8.615850e-47 |
| Msa0514320 | Msa0948320 | 0.911326 | 6.905454e-83 | -8.615850e-47 |
| Msa0514320 | Msa0958550 | 0.835411 | 1.704618e-56 | -8.615850e-47 |
| Msa0514320 | Msa0964900 | 0.825962 | 3.521853e-54 | -8.615850e-47 |
| Msa0514320 | Msa0973100 | 0.828758 | 7.523205e-55 | -8.615850e-47 |
| Msa0514320 | Msa0974080 | 0.846589 | 1.975123e-59 | -8.615850e-47 |
| Msa0514320 | Msa0976670 | 0.803949 | 2.730148e-49 | -8.615850e-47 |
| Msa0514320 | Msa1000890 | 0.820062 | 8.364543e-53 | -8.615850e-47 |
| Msa0514320 | Msa1000900 | 0.815150 | 1.071375e-51 | -8.615850e-47 |
| Msa0514320 | Msa1001390 | 0.807773 | 4.292005e-50 | -8.615850e-47 |
| Msa0514320 | Msa1002850 | 0.802740 | 4.859516e-49 | -8.615850e-47 |
| Msa0514320 | Msa1075220 | -0.804118 | 2.518630e-49 | -8.615850e-47 |
| Msa0514320 | Msa1098250 | 0.805075 | 1.590269e-49 | -8.615850e-47 |
| Msa0514320 | Msa1111870 | 0.820044 | 8.445902e-53 | -8.615850e-47 |
| Msa0514320 | Msa1113170 | 0.821036 | 4.997694e-53 | -8.615850e-47 |
| Msa0514320 | Msa1115870 | 0.839410 | 1.611216e-57 | -8.615850e-47 |
| Msa0514320 | Msa1121480 | 0.819517 | 1.114424e-52 | -8.615850e-47 |
| Msa0514320 | Msa1121490 | 0.819697 | 1.013667e-52 | -8.615850e-47 |
| Msa0514320 | Msa1137570 | 0.832284 | 1.031900e-55 | -8.615850e-47 |
| Msa0514320 | Msa1142670 | 0.801102 | 1.054897e-48 | -8.615850e-47 |
| Msa0514320 | Msa1144720 | -0.804387 | 2.213467e-49 | -8.615850e-47 |
| Msa0514320 | Msa1152440 | 0.803588 | 3.244514e-49 | -8.615850e-47 |
| Msa0514320 | Msa1162550 | -0.808196 | 3.487748e-50 | -8.615850e-47 |
| Msa0514320 | Msa1177560 | 0.809521 | 1.815728e-50 | -8.615850e-47 |
| Msa0514320 | Msa1185110 | 0.809882 | 1.518630e-50 | -8.615850e-47 |
| Msa0514320 | Msa1246360 | 0.801179 | 1.017548e-48 | -8.615850e-47 |
| Msa0514320 | Msa1248370 | 0.801079 | 1.066221e-48 | -8.615850e-47 |
| Msa0514320 | Msa1249280 | 0.806587 | 7.650357e-50 | -8.615850e-47 |
| Msa0514320 | Msa1284680 | 0.830688 | 2.551215e-55 | -8.615850e-47 |
| Msa0514320 | Msa1286800 | 0.829119 | 6.150700e-55 | -8.615850e-47 |
| Msa0514320 | Msa1287190 | 0.808317 | 3.286804e-50 | -8.615850e-47 |
| Msa0514320 | Msa1366810 | 0.830463 | 2.895314e-55 | -8.615850e-47 |
| Msa0514320 | Msa1366970 | 0.806644 | 7.442557e-50 | -8.615850e-47 |
| Msa0514320 | Msa1394310 | 0.808278 | 3.350102e-50 | -8.615850e-47 |
| Msa0514320 | Msa1420820 | 0.821522 | 3.861040e-53 | -8.615850e-47 |
| Msa0514320 | Msa1451620 | -0.823441 | 1.383167e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514320 | MtrunA17_Chr2g0285481 | 62.654 | 324 | 115 | 4 | 2 | 321 | 1 | 322 | 1.22e-143 | 408 |
| Msa0514320 | MtrunA17_Chr1g0172741 | 62.037 | 324 | 117 | 4 | 2 | 321 | 1 | 322 | 3.46e-142 | 404 |
| Msa0514320 | MtrunA17_Chr8g0334551 | 56.707 | 328 | 135 | 2 | 1 | 321 | 1 | 328 | 7.58e-130 | 373 |
| Msa0514320 | MtrunA17_Chr2g0321391 | 66.803 | 244 | 78 | 2 | 79 | 321 | 3 | 244 | 3.43e-116 | 335 |
| Msa0514320 | MtrunA17_Chr5g0422701 | 64.677 | 201 | 68 | 2 | 122 | 321 | 14 | 212 | 5.51e-87 | 260 |
| Msa0514320 | MtrunA17_Chr2g0295811 | 40.724 | 221 | 113 | 6 | 119 | 321 | 10 | 230 | 3.32e-43 | 149 |
| Msa0514320 | MtrunA17_Chr5g0422691 | 57.143 | 105 | 42 | 2 | 2 | 103 | 1 | 105 | 1.32e-35 | 124 |
| Msa0514320 | MtrunA17_Chr2g0295611 | 62.500 | 96 | 35 | 1 | 100 | 194 | 1 | 96 | 8.86e-34 | 119 |
| Msa0514320 | MtrunA17_Chr8g0362511 | 30.097 | 309 | 181 | 10 | 21 | 310 | 67 | 359 | 1.12e-28 | 113 |
| Msa0514320 | MtrunA17_Chr5g0402821 | 29.114 | 316 | 194 | 9 | 22 | 315 | 16 | 323 | 1.01e-27 | 110 |
| Msa0514320 | MtrunA17_Chr5g0405761 | 28.428 | 299 | 184 | 7 | 19 | 312 | 47 | 320 | 1.31e-24 | 101 |
| Msa0514320 | MtrunA17_Chr3g0113081 | 28.155 | 309 | 160 | 8 | 12 | 311 | 373 | 628 | 4.01e-24 | 102 |
| Msa0514320 | MtrunA17_Chr3g0113081 | 37.500 | 152 | 86 | 2 | 22 | 173 | 185 | 327 | 4.09e-24 | 102 |
| Msa0514320 | MtrunA17_Chr3g0113081 | 35.821 | 134 | 79 | 2 | 11 | 144 | 3 | 129 | 5.05e-17 | 82.0 |
| Msa0514320 | MtrunA17_Chr6g0469501 | 62.069 | 58 | 22 | 0 | 264 | 321 | 1 | 58 | 4.35e-21 | 85.1 |
| Msa0514320 | MtrunA17_Chr1g0176881 | 30.147 | 136 | 94 | 1 | 21 | 156 | 21 | 155 | 5.26e-16 | 79.0 |
| Msa0514320 | MtrunA17_Chr1g0176881 | 29.655 | 145 | 99 | 2 | 2 | 146 | 175 | 316 | 1.96e-15 | 77.0 |
| Msa0514320 | MtrunA17_Chr8g0360271 | 24.915 | 293 | 184 | 11 | 33 | 310 | 21 | 292 | 7.41e-14 | 70.9 |
| Msa0514320 | MtrunA17_Chr1g0156481 | 22.772 | 303 | 204 | 8 | 19 | 311 | 12 | 294 | 3.34e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514320 | AT5G05800.1 | 24.921 | 317 | 213 | 6 | 6 | 322 | 156 | 447 | 7.94e-23 | 99.0 |
| Msa0514320 | AT5G05800.1 | 35.135 | 111 | 71 | 1 | 20 | 130 | 2 | 111 | 3.66e-15 | 76.3 |
| Msa0514320 | AT5G05800.5 | 24.921 | 317 | 213 | 6 | 6 | 322 | 156 | 447 | 7.94e-23 | 99.0 |
| Msa0514320 | AT5G05800.5 | 35.135 | 111 | 71 | 1 | 20 | 130 | 2 | 111 | 3.66e-15 | 76.3 |
| Msa0514320 | AT5G05800.3 | 24.921 | 317 | 213 | 6 | 6 | 322 | 156 | 447 | 7.94e-23 | 99.0 |
| Msa0514320 | AT5G05800.3 | 35.135 | 111 | 71 | 1 | 20 | 130 | 2 | 111 | 3.66e-15 | 76.3 |
| Msa0514320 | AT5G05800.2 | 24.921 | 317 | 213 | 6 | 6 | 322 | 156 | 447 | 7.94e-23 | 99.0 |
| Msa0514320 | AT5G05800.2 | 35.135 | 111 | 71 | 1 | 20 | 130 | 2 | 111 | 3.66e-15 | 76.3 |
| Msa0514320 | AT5G05800.4 | 24.921 | 317 | 213 | 6 | 6 | 322 | 156 | 447 | 7.94e-23 | 99.0 |
| Msa0514320 | AT5G05800.4 | 35.135 | 111 | 71 | 1 | 20 | 130 | 2 | 111 | 3.66e-15 | 76.3 |
| Msa0514320 | AT3G11290.2 | 25.566 | 309 | 189 | 8 | 20 | 310 | 163 | 448 | 7.65e-19 | 87.4 |
| Msa0514320 | AT3G11290.1 | 25.566 | 309 | 189 | 8 | 20 | 310 | 163 | 448 | 7.65e-19 | 87.4 |
| Msa0514320 | AT2G24960.1 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 1.70e-15 | 77.8 |
| Msa0514320 | AT2G24960.1 | 26.667 | 135 | 98 | 1 | 20 | 154 | 10 | 143 | 7.36e-11 | 63.5 |
| Msa0514320 | AT2G24960.2 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 2.10e-15 | 77.4 |
| Msa0514320 | AT2G24960.2 | 27.972 | 143 | 102 | 1 | 12 | 154 | 314 | 455 | 7.68e-12 | 66.6 |
| Msa0514320 | AT2G24960.2 | 26.667 | 135 | 98 | 1 | 20 | 154 | 10 | 143 | 9.64e-11 | 63.2 |
| Msa0514320 | AT3G11310.1 | 33.566 | 143 | 89 | 2 | 20 | 157 | 171 | 312 | 7.23e-13 | 69.7 |
| Msa0514320 | AT2G19220.1 | 26.019 | 319 | 198 | 12 | 9 | 317 | 149 | 439 | 4.58e-11 | 63.9 |
| Msa0514320 | AT4G02210.1 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 7.75e-11 | 63.2 |
| Msa0514320 | AT4G02210.2 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 7.75e-11 | 63.2 |
Find 75 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCATGGTATAACTTATT+TGG | 0.134716 | 3_4:-65006933 | Msa0514320:CDS |
| ACAACTGAATTTGGAAATAT+TGG | 0.148866 | 3_4:-65006530 | Msa0514320:CDS |
| GTTGGAGCAACAACTGAATT+TGG | 0.213211 | 3_4:-65006539 | Msa0514320:CDS |
| GGCAGAAAACAAAAGCTAAT+TGG | 0.275009 | 3_4:-65007142 | Msa0514320:CDS |
| AACTTATTTGGGAGAGAAAC+TGG | 0.287945 | 3_4:-65006921 | Msa0514320:CDS |
| TTGGGAGAGAAACTGGATTA+GGG | 0.298488 | 3_4:-65006914 | Msa0514320:CDS |
| TTTGGGAGAGAAACTGGATT+AGG | 0.315464 | 3_4:-65006915 | Msa0514320:CDS |
| GAAATAAACACCTCCCTTGC+AGG | 0.319413 | 3_4:+65006239 | None:intergenic |
| AAACTTTGTGAAAGCATGTT+TGG | 0.334075 | 3_4:-65007102 | Msa0514320:CDS |
| GTCCGGTTAAATTATGAAAT+CGG | 0.352053 | 3_4:+65007012 | None:intergenic |
| TGTATTACATACCAGTTGTT+TGG | 0.352266 | 3_4:+65006842 | None:intergenic |
| CAACTGAATTTGGAAATATT+GGG | 0.356640 | 3_4:-65006529 | Msa0514320:CDS |
| GAGCATGGTATAACTTATTT+GGG | 0.363157 | 3_4:-65006932 | Msa0514320:CDS |
| TTCAAGGATGTAGTGGCTAA+TGG | 0.366838 | 3_4:-65006680 | Msa0514320:CDS |
| CAGAGGAGAAGAGGTTGAAT+TGG | 0.373243 | 3_4:-65006205 | Msa0514320:CDS |
| GTCCGATTTCATAATTTAAC+CGG | 0.374307 | 3_4:-65007014 | Msa0514320:CDS |
| TTGGTCTCCCACCACTCATC+AGG | 0.410369 | 3_4:+65006861 | None:intergenic |
| GCAGAAAACAAAAGCTAATT+GGG | 0.414370 | 3_4:-65007141 | Msa0514320:CDS |
| GTTCCTCCTCACCTAGTGAT+GGG | 0.415978 | 3_4:-65007166 | Msa0514320:CDS |
| GAAAAGTGTGGTTAACTCAT+TGG | 0.420206 | 3_4:+65006700 | None:intergenic |
| AAAAGGGTGGACAAATATTA+GGG | 0.422862 | 3_4:-65007036 | Msa0514320:CDS |
| GGTTCCTCCTCACCTAGTGA+TGG | 0.438340 | 3_4:-65007167 | Msa0514320:CDS |
| TTCCTCCTCACCTAGTGATG+GGG | 0.476214 | 3_4:-65007165 | Msa0514320:CDS |
| AGAAGGCTCAACTAAAGAAT+AGG | 0.479515 | 3_4:-65006980 | Msa0514320:CDS |
| TCCTCCTCACCTAGTGATGG+GGG | 0.484199 | 3_4:-65007164 | Msa0514320:CDS |
| GCTGCGGGTAATGCATCTAT+TGG | 0.495551 | 3_4:-65006350 | Msa0514320:CDS |
| GATGAGGCAGTGGCTGTAGA+AGG | 0.502147 | 3_4:-65006587 | Msa0514320:CDS |
| AGCCTTCTCATACTTCAGTC+CGG | 0.504703 | 3_4:+65006995 | None:intergenic |
| CGTACCAACACGTTCTCCCT+TGG | 0.505137 | 3_4:+65007070 | None:intergenic |
| TGCTGATGTTTAAGCCTGCA+AGG | 0.517021 | 3_4:-65006253 | Msa0514320:CDS |
| TGGCTAATGGAGAGTACACT+TGG | 0.522261 | 3_4:-65006667 | Msa0514320:CDS |
| GCAGTGGCTGTAGAAGGATC+CGG | 0.526925 | 3_4:-65006581 | Msa0514320:CDS |
| ATGACAGTCTGAGAAAGGAT+TGG | 0.531322 | 3_4:-65006956 | Msa0514320:CDS |
| CTTCTCCTCTGAACCTCGTA+GGG | 0.535159 | 3_4:+65006217 | None:intergenic |
| GTGGTGGGAGACCAAACAAC+TGG | 0.536532 | 3_4:-65006853 | Msa0514320:intron |
| AGGTTAGTCATGAACGGCAG+TGG | 0.537233 | 3_4:+65006161 | None:intergenic |
| TAGGTATGACAGTCTGAGAA+AGG | 0.543958 | 3_4:-65006961 | Msa0514320:CDS |
| TATTTCCCTACGAGGTTCAG+AGG | 0.555424 | 3_4:-65006222 | Msa0514320:CDS |
| GGAGAGAAACTGGATTAGGG+TGG | 0.557144 | 3_4:-65006911 | Msa0514320:CDS |
| ATCATTTGAGACTTCATCCA+TGG | 0.558263 | 3_4:+65006304 | None:intergenic |
| GTCAAAAGAGTGGTGAGAAG+AGG | 0.562252 | 3_4:-65006481 | Msa0514320:CDS |
| CATGACTAACCTGTGTGACT+AGG | 0.562786 | 3_4:-65006150 | None:intergenic |
| ACTTGCATCCTCGCTATCGC+CGG | 0.566382 | 3_4:+65006562 | None:intergenic |
| TACGAGGTTCAGAGGAGAAG+AGG | 0.567800 | 3_4:-65006214 | Msa0514320:CDS |
| CGTTCTCGCAATGATGCTGC+GGG | 0.569360 | 3_4:-65006365 | Msa0514320:CDS |
| ATGTTTGGAGCAAGTCTCCA+AGG | 0.570714 | 3_4:-65007087 | Msa0514320:CDS |
| TACACTTGGGCACCATCATG+TGG | 0.573130 | 3_4:-65006653 | Msa0514320:CDS |
| AGAAGGATCCGGCGATAGCG+AGG | 0.580889 | 3_4:-65006570 | Msa0514320:CDS |
| TCGTTCTCGCAATGATGCTG+CGG | 0.583184 | 3_4:-65006366 | Msa0514320:CDS |
| TGCATCTATTGGTGAAGTGA+TGG | 0.591393 | 3_4:-65006339 | Msa0514320:CDS |
| GCTGATGTTTAAGCCTGCAA+GGG | 0.594722 | 3_4:-65006252 | Msa0514320:CDS |
| TCTTCTCCTCTGAACCTCGT+AGG | 0.595412 | 3_4:+65006216 | None:intergenic |
| GATAGCGAGGATGCAAGTGT+TGG | 0.597893 | 3_4:-65006557 | Msa0514320:CDS |
| GATGGCAATACCCCACATGA+TGG | 0.601622 | 3_4:+65006641 | None:intergenic |
| CCTCCTCACCTAGTGATGGG+GGG | 0.608278 | 3_4:-65007163 | Msa0514320:CDS |
| TGAGAAAGGATTGGAGAGCA+TGG | 0.612846 | 3_4:-65006947 | Msa0514320:CDS |
| GTGGTTAACTCATTGGCGAA+TGG | 0.617203 | 3_4:+65006707 | None:intergenic |
| AACCGGACTGAAGTATGAGA+AGG | 0.626830 | 3_4:-65006997 | Msa0514320:CDS |
| ACACTTGGGCACCATCATGT+GGG | 0.626839 | 3_4:-65006652 | Msa0514320:CDS |
| CACTACATCCTTGAAAAGTG+TGG | 0.627204 | 3_4:+65006688 | None:intergenic |
| GGTTAGTCATGAACGGCAGT+GGG | 0.628971 | 3_4:+65006162 | None:intergenic |
| AAAACTGATGGTCAAAAGAG+TGG | 0.632803 | 3_4:-65006491 | Msa0514320:CDS |
| TTGTAGCACCTGATGAGTGG+TGG | 0.632872 | 3_4:-65006869 | Msa0514320:CDS |
| GATGTTTAAGCCTGCAAGGG+AGG | 0.635869 | 3_4:-65006249 | Msa0514320:CDS |
| TCACACAGGTTAGTCATGAA+CGG | 0.640237 | 3_4:+65006155 | None:intergenic |
| CCATTACATCCTAGTCACAC+AGG | 0.643132 | 3_4:+65006141 | None:intergenic |
| GAGAGAAACTGGATTAGGGT+GGG | 0.643865 | 3_4:-65006910 | Msa0514320:CDS |
| GTCTCCAAGGGAGAACGTGT+TGG | 0.644338 | 3_4:-65007074 | Msa0514320:CDS |
| CACTTGGGCACCATCATGTG+GGG | 0.646121 | 3_4:-65006651 | Msa0514320:CDS |
| TGTTTGGAGCAAGTCTCCAA+GGG | 0.647436 | 3_4:-65007086 | Msa0514320:CDS |
| TGTAGCACCTGATGAGTGGT+GGG | 0.651018 | 3_4:-65006868 | Msa0514320:CDS |
| GATGGCTGAGCTTCACACCA+TGG | 0.663371 | 3_4:-65006321 | Msa0514320:CDS |
| GGCTAATGGAGAGTACACTT+GGG | 0.684848 | 3_4:-65006666 | Msa0514320:CDS |
| CTGTTGTAGCACCTGATGAG+TGG | 0.705267 | 3_4:-65006872 | Msa0514320:CDS |
| GAGGTGTTTATTTCCCTACG+AGG | 0.752410 | 3_4:-65006230 | Msa0514320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCCTAAATTTTTCATAAAGA+GGG | + | chr3_4:65006607-65006626 | None:intergenic | 20.0% |
| !!! | TTCCTAAATTTTTCATAAAG+AGG | + | chr3_4:65006608-65006627 | None:intergenic | 20.0% |
| !! | TTATGAAAAATTTAGGAACA+AGG | - | chr3_4:65006610-65006629 | Msa0514320:CDS | 20.0% |
| !! | TATGAAAAATTTAGGAACAA+GGG | - | chr3_4:65006611-65006630 | Msa0514320:CDS | 20.0% |
| !!! | TCCTAAATTTTTCATAAAGA+GGG | + | chr3_4:65006607-65006626 | None:intergenic | 20.0% |
| !!! | TTCCTAAATTTTTCATAAAG+AGG | + | chr3_4:65006608-65006627 | None:intergenic | 20.0% |
| !! | TTATGAAAAATTTAGGAACA+AGG | - | chr3_4:65006610-65006629 | Msa0514320:CDS | 20.0% |
| !! | TATGAAAAATTTAGGAACAA+GGG | - | chr3_4:65006611-65006630 | Msa0514320:CDS | 20.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | - | chr3_4:65006157-65006176 | Msa0514320:CDS | 25.0% |
| ! | ACCCTCTTTATGAAAAATTT+AGG | - | chr3_4:65006603-65006622 | Msa0514320:CDS | 25.0% |
| ! | ATGAAAAATTTAGGAACAAG+GGG | - | chr3_4:65006612-65006631 | Msa0514320:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | - | chr3_4:65006815-65006834 | Msa0514320:intron | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | - | chr3_4:65006816-65006835 | Msa0514320:intron | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | - | chr3_4:65006842-65006861 | Msa0514320:intron | 25.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | - | chr3_4:65006157-65006176 | Msa0514320:CDS | 25.0% |
| ! | ACCCTCTTTATGAAAAATTT+AGG | - | chr3_4:65006603-65006622 | Msa0514320:CDS | 25.0% |
| ! | ATGAAAAATTTAGGAACAAG+GGG | - | chr3_4:65006612-65006631 | Msa0514320:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | - | chr3_4:65006815-65006834 | Msa0514320:intron | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | - | chr3_4:65006816-65006835 | Msa0514320:intron | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | - | chr3_4:65006842-65006861 | Msa0514320:intron | 25.0% |
| GAATACCAAGAAAAATGTTG+TGG | - | chr3_4:65006156-65006175 | Msa0514320:CDS | 30.0% | |
| GCAGAAAACAAAAGCTAATT+GGG | - | chr3_4:65006204-65006223 | Msa0514320:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | - | chr3_4:65006243-65006262 | Msa0514320:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | - | chr3_4:65006293-65006312 | Msa0514320:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | - | chr3_4:65006308-65006327 | Msa0514320:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | - | chr3_4:65006309-65006328 | Msa0514320:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | - | chr3_4:65006331-65006350 | Msa0514320:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | + | chr3_4:65006336-65006355 | None:intergenic | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | - | chr3_4:65006412-65006431 | Msa0514320:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | - | chr3_4:65006413-65006432 | Msa0514320:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | + | chr3_4:65006506-65006525 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | + | chr3_4:65006549-65006568 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | + | chr3_4:65006725-65006744 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | - | chr3_4:65006742-65006761 | Msa0514320:CDS | 30.0% |
| GAATACCAAGAAAAATGTTG+TGG | - | chr3_4:65006156-65006175 | Msa0514320:CDS | 30.0% | |
| GCAGAAAACAAAAGCTAATT+GGG | - | chr3_4:65006204-65006223 | Msa0514320:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | - | chr3_4:65006243-65006262 | Msa0514320:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | - | chr3_4:65006293-65006312 | Msa0514320:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | - | chr3_4:65006308-65006327 | Msa0514320:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | - | chr3_4:65006309-65006328 | Msa0514320:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | - | chr3_4:65006331-65006350 | Msa0514320:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | + | chr3_4:65006336-65006355 | None:intergenic | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | - | chr3_4:65006412-65006431 | Msa0514320:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | - | chr3_4:65006413-65006432 | Msa0514320:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | + | chr3_4:65006506-65006525 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | + | chr3_4:65006549-65006568 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | + | chr3_4:65006725-65006744 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | - | chr3_4:65006742-65006761 | Msa0514320:CDS | 30.0% |
| GGCAGAAAACAAAAGCTAAT+TGG | - | chr3_4:65006203-65006222 | Msa0514320:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | - | chr3_4:65006292-65006311 | Msa0514320:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | - | chr3_4:65006365-65006384 | Msa0514320:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | - | chr3_4:65006424-65006443 | Msa0514320:CDS | 35.0% | |
| GATGTGAGTTATGAAAATGC+AGG | - | chr3_4:65006577-65006596 | Msa0514320:CDS | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | + | chr3_4:65006648-65006667 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | - | chr3_4:65006649-65006668 | Msa0514320:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | - | chr3_4:65006854-65006873 | Msa0514320:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | + | chr3_4:65006914-65006933 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | + | chr3_4:65007044-65007063 | None:intergenic | 35.0% |
| GGCAGAAAACAAAAGCTAAT+TGG | - | chr3_4:65006203-65006222 | Msa0514320:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | - | chr3_4:65006292-65006311 | Msa0514320:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | - | chr3_4:65006365-65006384 | Msa0514320:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | - | chr3_4:65006424-65006443 | Msa0514320:CDS | 35.0% | |
| GATGTGAGTTATGAAAATGC+AGG | - | chr3_4:65006577-65006596 | Msa0514320:CDS | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | + | chr3_4:65006648-65006667 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | - | chr3_4:65006649-65006668 | Msa0514320:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | - | chr3_4:65006854-65006873 | Msa0514320:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | + | chr3_4:65006914-65006933 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | + | chr3_4:65007044-65007063 | None:intergenic | 35.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | + | chr3_4:65006164-65006183 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | - | chr3_4:65006296-65006315 | Msa0514320:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | - | chr3_4:65006384-65006403 | Msa0514320:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | - | chr3_4:65006389-65006408 | Msa0514320:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | - | chr3_4:65006430-65006449 | Msa0514320:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | - | chr3_4:65006431-65006450 | Msa0514320:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | + | chr3_4:65006660-65006679 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | - | chr3_4:65006658-65006677 | Msa0514320:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | - | chr3_4:65006665-65006684 | Msa0514320:CDS | 40.0% | |
| GTTGGAGCAACAACTGAATT+TGG | - | chr3_4:65006806-65006825 | Msa0514320:intron | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | - | chr3_4:65007006-65007025 | Msa0514320:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+CGG | + | chr3_4:65007193-65007212 | None:intergenic | 40.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | + | chr3_4:65006164-65006183 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | - | chr3_4:65006296-65006315 | Msa0514320:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | - | chr3_4:65006384-65006403 | Msa0514320:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | - | chr3_4:65006389-65006408 | Msa0514320:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | - | chr3_4:65006430-65006449 | Msa0514320:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | - | chr3_4:65006431-65006450 | Msa0514320:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | + | chr3_4:65006660-65006679 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | - | chr3_4:65006658-65006677 | Msa0514320:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | - | chr3_4:65006665-65006684 | Msa0514320:CDS | 40.0% | |
| GTTGGAGCAACAACTGAATT+TGG | - | chr3_4:65006806-65006825 | Msa0514320:intron | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | - | chr3_4:65007006-65007025 | Msa0514320:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+CGG | + | chr3_4:65007193-65007212 | None:intergenic | 40.0% |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | - | chr3_4:65006258-65006277 | Msa0514320:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | - | chr3_4:65006259-65006278 | Msa0514320:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | - | chr3_4:65006348-65006367 | Msa0514320:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | + | chr3_4:65006353-65006372 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | - | chr3_4:65006398-65006417 | Msa0514320:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | - | chr3_4:65006435-65006454 | Msa0514320:CDS | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | + | chr3_4:65006641-65006660 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | - | chr3_4:65006678-65006697 | Msa0514320:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | - | chr3_4:65006679-65006698 | Msa0514320:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | - | chr3_4:65006748-65006767 | Msa0514320:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | - | chr3_4:65006864-65006883 | Msa0514320:CDS | 45.0% | |
| TGCTGATGTTTAAGCCTGCA+AGG | - | chr3_4:65007092-65007111 | Msa0514320:CDS | 45.0% | |
| GCTGATGTTTAAGCCTGCAA+GGG | - | chr3_4:65007093-65007112 | Msa0514320:CDS | 45.0% | |
| GAAATAAACACCTCCCTTGC+AGG | + | chr3_4:65007109-65007128 | None:intergenic | 45.0% | |
| ! | GAGGTGTTTATTTCCCTACG+AGG | - | chr3_4:65007115-65007134 | Msa0514320:CDS | 45.0% |
| TATTTCCCTACGAGGTTCAG+AGG | - | chr3_4:65007123-65007142 | Msa0514320:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | - | chr3_4:65007140-65007159 | Msa0514320:CDS | 45.0% | |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | - | chr3_4:65006258-65006277 | Msa0514320:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | - | chr3_4:65006259-65006278 | Msa0514320:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | - | chr3_4:65006348-65006367 | Msa0514320:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | + | chr3_4:65006353-65006372 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | - | chr3_4:65006398-65006417 | Msa0514320:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | - | chr3_4:65006435-65006454 | Msa0514320:CDS | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | + | chr3_4:65006641-65006660 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | - | chr3_4:65006678-65006697 | Msa0514320:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | - | chr3_4:65006679-65006698 | Msa0514320:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | - | chr3_4:65006748-65006767 | Msa0514320:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | - | chr3_4:65006864-65006883 | Msa0514320:CDS | 45.0% | |
| TGCTGATGTTTAAGCCTGCA+AGG | - | chr3_4:65007092-65007111 | Msa0514320:CDS | 45.0% | |
| GCTGATGTTTAAGCCTGCAA+GGG | - | chr3_4:65007093-65007112 | Msa0514320:CDS | 45.0% | |
| GAAATAAACACCTCCCTTGC+AGG | + | chr3_4:65007109-65007128 | None:intergenic | 45.0% | |
| ! | GAGGTGTTTATTTCCCTACG+AGG | - | chr3_4:65007115-65007134 | Msa0514320:CDS | 45.0% |
| TATTTCCCTACGAGGTTCAG+AGG | - | chr3_4:65007123-65007142 | Msa0514320:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | - | chr3_4:65007140-65007159 | Msa0514320:CDS | 45.0% | |
| GTTCCTCCTCACCTAGTGAT+GGG | - | chr3_4:65006179-65006198 | Msa0514320:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | - | chr3_4:65006180-65006199 | Msa0514320:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | - | chr3_4:65006434-65006453 | Msa0514320:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | - | chr3_4:65006473-65006492 | Msa0514320:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | - | chr3_4:65006476-65006495 | Msa0514320:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | - | chr3_4:65006477-65006496 | Msa0514320:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | - | chr3_4:65006692-65006711 | Msa0514320:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | - | chr3_4:65006693-65006712 | Msa0514320:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | + | chr3_4:65006707-65006726 | None:intergenic | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | - | chr3_4:65006788-65006807 | Msa0514320:intron | 50.0% | |
| TCGTTCTCGCAATGATGCTG+CGG | - | chr3_4:65006979-65006998 | Msa0514320:CDS | 50.0% | |
| GCTGCGGGTAATGCATCTAT+TGG | - | chr3_4:65006995-65007014 | Msa0514320:CDS | 50.0% | |
| GATGTTTAAGCCTGCAAGGG+AGG | - | chr3_4:65007096-65007115 | Msa0514320:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | + | chr3_4:65007131-65007150 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | + | chr3_4:65007132-65007151 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | - | chr3_4:65007131-65007150 | Msa0514320:CDS | 50.0% | |
| ! | GGTTAGTCATGAACGGCAGT+GGG | + | chr3_4:65007186-65007205 | None:intergenic | 50.0% |
| ! | AGGTTAGTCATGAACGGCAG+TGG | + | chr3_4:65007187-65007206 | None:intergenic | 50.0% |
| GTTCCTCCTCACCTAGTGAT+GGG | - | chr3_4:65006179-65006198 | Msa0514320:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | - | chr3_4:65006180-65006199 | Msa0514320:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | - | chr3_4:65006434-65006453 | Msa0514320:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | - | chr3_4:65006473-65006492 | Msa0514320:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | - | chr3_4:65006476-65006495 | Msa0514320:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | - | chr3_4:65006477-65006496 | Msa0514320:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | - | chr3_4:65006692-65006711 | Msa0514320:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | - | chr3_4:65006693-65006712 | Msa0514320:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | + | chr3_4:65006707-65006726 | None:intergenic | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | - | chr3_4:65006788-65006807 | Msa0514320:intron | 50.0% | |
| TCGTTCTCGCAATGATGCTG+CGG | - | chr3_4:65006979-65006998 | Msa0514320:CDS | 50.0% | |
| GCTGCGGGTAATGCATCTAT+TGG | - | chr3_4:65006995-65007014 | Msa0514320:CDS | 50.0% | |
| GATGTTTAAGCCTGCAAGGG+AGG | - | chr3_4:65007096-65007115 | Msa0514320:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | + | chr3_4:65007131-65007150 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | + | chr3_4:65007132-65007151 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | - | chr3_4:65007131-65007150 | Msa0514320:CDS | 50.0% | |
| ! | GGTTAGTCATGAACGGCAGT+GGG | + | chr3_4:65007186-65007205 | None:intergenic | 50.0% |
| ! | AGGTTAGTCATGAACGGCAG+TGG | + | chr3_4:65007187-65007206 | None:intergenic | 50.0% |
| GGTTCCTCCTCACCTAGTGA+TGG | - | chr3_4:65006178-65006197 | Msa0514320:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | - | chr3_4:65006181-65006200 | Msa0514320:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | + | chr3_4:65006193-65006212 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | - | chr3_4:65006271-65006290 | Msa0514320:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | + | chr3_4:65006278-65006297 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | + | chr3_4:65006487-65006506 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | - | chr3_4:65006492-65006511 | Msa0514320:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | - | chr3_4:65006694-65006713 | Msa0514320:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | - | chr3_4:65006758-65006777 | Msa0514320:intron | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+CGG | - | chr3_4:65006764-65006783 | Msa0514320:intron | 55.0% | |
| ACTTGCATCCTCGCTATCGC+CGG | + | chr3_4:65006786-65006805 | None:intergenic | 55.0% | |
| CGTTCTCGCAATGATGCTGC+GGG | - | chr3_4:65006980-65006999 | Msa0514320:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | - | chr3_4:65007024-65007043 | Msa0514320:CDS | 55.0% | |
| GGTTCCTCCTCACCTAGTGA+TGG | - | chr3_4:65006178-65006197 | Msa0514320:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | - | chr3_4:65006181-65006200 | Msa0514320:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | + | chr3_4:65006193-65006212 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | - | chr3_4:65006271-65006290 | Msa0514320:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | + | chr3_4:65006278-65006297 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | + | chr3_4:65006487-65006506 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | - | chr3_4:65006492-65006511 | Msa0514320:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | - | chr3_4:65006694-65006713 | Msa0514320:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | - | chr3_4:65006758-65006777 | Msa0514320:intron | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+CGG | - | chr3_4:65006764-65006783 | Msa0514320:intron | 55.0% | |
| ACTTGCATCCTCGCTATCGC+CGG | + | chr3_4:65006786-65006805 | None:intergenic | 55.0% | |
| CGTTCTCGCAATGATGCTGC+GGG | - | chr3_4:65006980-65006999 | Msa0514320:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | - | chr3_4:65007024-65007043 | Msa0514320:CDS | 55.0% | |
| ! | CCTCCTCACCTAGTGATGGG+GGG | - | chr3_4:65006182-65006201 | Msa0514320:CDS | 60.0% |
| AGAAGGATCCGGCGATAGCG+AGG | - | chr3_4:65006775-65006794 | Msa0514320:intron | 60.0% | |
| ! | CCTCCTCACCTAGTGATGGG+GGG | - | chr3_4:65006182-65006201 | Msa0514320:CDS | 60.0% |
| AGAAGGATCCGGCGATAGCG+AGG | - | chr3_4:65006775-65006794 | Msa0514320:intron | 60.0% | |
| CCCCCCATCACTAGGTGAGG+AGG | + | chr3_4:65006185-65006204 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | + | chr3_4:65006188-65006207 | None:intergenic | 65.0% | |
| CCCCCCATCACTAGGTGAGG+AGG | + | chr3_4:65006185-65006204 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | + | chr3_4:65006188-65006207 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 65006151 | 65007216 | 65006151 | ID=Msa0514320;Name=Msa0514320 |
| chr3_4 | mRNA | 65006151 | 65007216 | 65006151 | ID=Msa0514320-mRNA-1;Parent=Msa0514320;Name=Msa0514320-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|326 |
| chr3_4 | exon | 65006854 | 65007216 | 65006854 | ID=Msa0514320-mRNA-1:exon:16481;Parent=Msa0514320-mRNA-1 |
| chr3_4 | exon | 65006151 | 65006768 | 65006151 | ID=Msa0514320-mRNA-1:exon:16480;Parent=Msa0514320-mRNA-1 |
| chr3_4 | CDS | 65006854 | 65007216 | 65006854 | ID=Msa0514320-mRNA-1:cds;Parent=Msa0514320-mRNA-1 |
| chr3_4 | CDS | 65006151 | 65006768 | 65006151 | ID=Msa0514320-mRNA-1:cds;Parent=Msa0514320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
