AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0685080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685080 MtrunA17_Chr4g0033341 93.774 514 21 1 1 503 31 544 0.0 993
Msa0685080 MtrunA17_Chr4g0033311 66.860 516 156 3 1 502 1 515 0.0 729
Msa0685080 MtrunA17_Chr3g0088441 66.135 502 155 3 15 502 14 514 0.0 710
Msa0685080 MtrunA17_Chr2g0329201 66.337 505 150 6 14 502 7 507 0.0 696
Msa0685080 MtrunA17_Chr4g0033331 66.129 496 151 4 21 500 19 513 0.0 696
Msa0685080 MtrunA17_Chr2g0329191 67.146 487 144 4 30 502 25 509 0.0 695
Msa0685080 MtrunA17_Chr4g0033401 65.657 495 155 3 20 500 15 508 0.0 694
Msa0685080 MtrunA17_Chr4g0033321 65.139 502 157 5 15 500 8 507 0.0 692
Msa0685080 MtrunA17_Chr6g0482131 63.529 510 170 5 8 502 4 512 0.0 682
Msa0685080 MtrunA17_Chr6g0482071 61.657 519 173 6 4 502 1 513 0.0 663
Msa0685080 MtrunA17_Chr4g0033271 62.500 512 172 6 7 503 6 512 0.0 661
Msa0685080 MtrunA17_Chr4g0033201 60.274 511 188 3 7 503 4 513 0.0 658
Msa0685080 MtrunA17_Chr4g0033191 62.222 495 169 4 26 503 27 520 0.0 653
Msa0685080 MtrunA17_Chr6g0482081 61.914 512 178 5 7 502 3 513 0.0 647
Msa0685080 MtrunA17_Chr4g0033261 62.275 501 152 3 15 502 17 493 0.0 645
Msa0685080 MtrunA17_Chr4g0033231 59.761 502 163 4 16 503 18 494 0.0 634
Msa0685080 MtrunA17_Chr2g0329321 58.869 513 167 6 7 502 3 488 0.0 625
Msa0685080 MtrunA17_Chr4g0006111 56.088 501 171 8 25 502 51 525 0.0 566
Msa0685080 MtrunA17_Chr5g0430451 55.133 526 184 7 1 502 1 498 0.0 561
Msa0685080 MtrunA17_Chr4g0010501 54.927 477 198 4 38 502 23 494 0.0 554
Msa0685080 MtrunA17_Chr3g0087261 52.918 514 222 7 4 502 1 509 0.0 537
Msa0685080 MtrunA17_Chr4g0006131 54.118 510 186 9 16 503 19 502 0.0 534
Msa0685080 MtrunA17_Chr4g0043091 51.383 506 221 8 12 501 6 502 0.0 521
Msa0685080 MtrunA17_Chr3g0087271 51.845 515 230 6 1 502 1 510 2.04e-179 513
Msa0685080 MtrunA17_Chr4g0042171 48.323 507 237 9 12 501 1 499 3.74e-163 472
Msa0685080 MtrunA17_Chr6g0482941 48.431 510 235 10 10 502 14 512 5.31e-162 469
Msa0685080 MtrunA17_Chr6g0482951 47.047 508 245 8 10 502 14 512 4.32e-159 461
Msa0685080 MtrunA17_Chr3g0090131 46.960 477 231 6 36 501 18 483 2.89e-154 449
Msa0685080 MtrunA17_Chr3g0090111 46.934 473 230 7 39 501 19 480 6.97e-153 445
Msa0685080 MtrunA17_Chr2g0301231 52.518 417 152 6 107 502 1 392 2.51e-152 440
Msa0685080 MtrunA17_Chr4g0074561 45.233 493 240 7 25 500 31 510 9.44e-150 438
Msa0685080 MtrunA17_Chr2g0288071 46.541 477 237 5 42 503 70 543 5.19e-148 435
Msa0685080 MtrunA17_Chr4g0074551 48.000 475 228 7 44 503 55 525 4.31e-147 433
Msa0685080 MtrunA17_Chr2g0288021 43.945 512 266 8 7 503 5 510 5.17e-141 416
Msa0685080 MtrunA17_Chr5g0428831 45.110 501 246 10 13 501 6 489 9.51e-141 415
Msa0685080 MtrunA17_Chr1g0195611 44.950 505 240 9 13 501 6 488 1.58e-140 414
Msa0685080 MtrunA17_Chr7g0242691 44.375 480 238 9 38 502 30 495 7.61e-140 412
Msa0685080 MtrunA17_Chr7g0242681 46.122 477 229 9 39 501 38 500 1.51e-139 412
Msa0685080 MtrunA17_Chr2g0317821 43.943 487 254 8 28 500 22 503 2.42e-138 409
Msa0685080 MtrunA17_Chr2g0317841 42.043 509 270 8 6 500 6 503 3.32e-138 409
Msa0685080 MtrunA17_Chr4g0006971 44.770 478 233 9 39 500 27 489 5.39e-134 398
Msa0685080 MtrunA17_Chr7g0234091 43.067 476 242 6 40 503 76 534 7.09e-122 367
Msa0685080 MtrunA17_Chr7g0234131 43.249 474 239 6 40 500 76 532 3.04e-121 365
Msa0685080 MtrunA17_Chr7g0234111 43.487 476 240 6 40 503 76 534 7.30e-121 365
Msa0685080 MtrunA17_Chr5g0418871 56.623 302 124 4 58 356 2 299 2.00e-119 354
Msa0685080 MtrunA17_Chr3g0087201 52.994 334 137 5 183 502 17 344 3.44e-117 348
Msa0685080 MtrunA17_Chr1g0195641 46.923 390 181 6 38 412 26 404 4.20e-114 343
Msa0685080 MtrunA17_Chr7g0230651 43.089 369 193 5 86 447 18 376 8.93e-99 303
Msa0685080 MtrunA17_Chr3g0087191 66.897 145 48 0 38 182 21 165 2.70e-70 221
Msa0685080 MtrunA17_Chr7g0236731 46.639 238 122 3 128 364 28 261 1.32e-59 198
Msa0685080 MtrunA17_Chr7g0227561 38.007 271 129 5 41 307 48 283 1.61e-59 198
Msa0685080 MtrunA17_Chr4g0068871 27.078 421 234 16 80 492 169 524 9.22e-25 108
Msa0685080 MtrunA17_Chr5g0418861 52.222 90 42 1 412 500 1 90 4.75e-24 96.3
Msa0685080 MtrunA17_Chr8g0352881 46.392 97 51 1 262 358 57 152 1.80e-20 88.2
Msa0685080 MtrunA17_Chr2g0288031 54.237 59 25 1 191 247 4 62 2.87e-12 62.0
Msa0685080 MtrunA17_Chr7g0227591 52.727 55 26 0 449 503 14 68 5.41e-12 61.2
Msa0685080 MtrunA17_Chr1g0195651 54.902 51 22 1 452 501 1 51 2.80e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685080 AT5G44640.1 53.592 515 210 8 6 503 5 507 0.0 556
Msa0685080 AT5G42260.1 54.183 502 206 7 9 496 6 497 0.0 548
Msa0685080 AT2G44450.1 54.865 483 196 5 31 500 27 500 0.0 544
Msa0685080 AT2G44480.1 53.571 476 207 3 38 500 34 508 0.0 529
Msa0685080 AT2G44480.3 53.571 476 207 3 38 500 65 539 0.0 528
Msa0685080 AT3G60130.1 53.249 477 204 5 39 501 30 501 0.0 521
Msa0685080 AT2G25630.1 52.505 499 213 8 6 500 5 483 2.13e-179 513
Msa0685080 AT1G26560.1 52.490 482 208 6 36 500 29 506 9.10e-176 504
Msa0685080 AT5G24550.1 47.656 512 249 6 9 503 3 512 9.89e-172 495
Msa0685080 AT3G18080.1 50.826 484 217 8 34 503 34 510 2.81e-169 488
Msa0685080 AT3G60140.1 47.718 482 235 4 38 503 25 505 9.99e-169 489
Msa0685080 AT5G54570.1 49.375 480 223 6 38 500 29 505 5.21e-167 483
Msa0685080 AT3G60120.1 50.104 481 222 6 38 502 13 491 1.62e-166 482
Msa0685080 AT2G44490.1 49.896 479 221 6 41 501 16 493 1.16e-165 480
Msa0685080 AT5G24540.1 47.308 520 236 7 9 503 6 512 1.30e-165 479
Msa0685080 AT1G51470.1 48.626 473 228 5 39 502 45 511 8.61e-165 476
Msa0685080 AT1G47600.1 48.414 473 229 5 39 502 45 511 7.92e-164 474
Msa0685080 AT1G47600.2 48.203 473 229 5 39 502 45 510 1.46e-163 473
Msa0685080 AT2G44460.1 46.337 505 252 6 12 500 3 504 2.85e-160 468
Msa0685080 AT3G18070.3 47.648 489 223 9 31 503 22 493 3.16e-159 461
Msa0685080 AT2G44470.3 44.336 512 264 5 7 502 1 507 1.58e-158 463
Msa0685080 AT3G18070.1 47.853 489 228 9 31 503 22 499 3.40e-158 459
Msa0685080 AT3G60130.2 53.012 415 176 5 101 501 40 449 3.93e-154 447
Msa0685080 AT2G44480.2 51.843 407 182 3 107 500 1 406 1.88e-152 441
Msa0685080 AT5G25980.2 45.402 522 254 12 1 501 12 523 3.50e-152 446
Msa0685080 AT2G32860.2 47.280 478 236 4 39 500 94 571 2.79e-151 446
Msa0685080 AT1G75940.1 46.507 501 243 9 21 500 21 517 2.98e-151 442
Msa0685080 AT3G09260.1 46.250 480 240 6 39 502 35 512 4.80e-151 442
Msa0685080 AT2G32860.1 47.490 478 234 5 39 500 94 570 1.41e-150 444
Msa0685080 AT5G36890.2 47.046 474 227 8 41 501 18 480 2.99e-150 438
Msa0685080 AT5G36890.1 47.046 474 227 8 41 501 18 480 3.93e-150 438
Msa0685080 AT3G03640.1 44.250 513 263 8 9 502 6 514 7.63e-148 434
Msa0685080 AT5G54570.3 49.531 426 196 5 38 447 29 451 1.46e-147 430
Msa0685080 AT1G66280.1 44.800 500 253 8 20 500 15 510 3.94e-147 432
Msa0685080 AT3G60130.3 51.807 415 170 6 101 501 40 438 5.06e-146 426
Msa0685080 AT1G02850.2 46.541 477 223 8 40 501 27 486 8.52e-146 427
Msa0685080 AT1G66270.1 44.578 498 249 8 28 502 19 512 1.37e-145 428
Msa0685080 AT3G21370.1 44.948 485 242 8 38 501 32 512 8.45e-144 423
Msa0685080 AT5G28510.1 42.913 515 269 8 7 500 9 519 1.30e-143 423
Msa0685080 AT5G26000.1 47.390 479 222 11 43 500 42 511 2.50e-143 422
Msa0685080 AT5G24540.2 46.537 462 210 6 9 446 6 454 1.98e-142 417
Msa0685080 AT1G52400.3 44.336 512 261 8 9 501 10 516 3.45e-142 419
Msa0685080 AT1G52400.1 44.336 512 261 8 9 501 10 516 3.45e-142 419
Msa0685080 AT1G61820.1 45.607 478 241 7 42 503 33 507 5.71e-142 418
Msa0685080 AT1G66270.2 44.177 498 249 9 28 502 19 510 7.23e-142 418
Msa0685080 AT1G02850.5 44.600 500 222 9 40 501 27 509 2.84e-141 417
Msa0685080 AT1G02850.4 44.711 501 221 10 40 501 27 510 1.30e-139 412
Msa0685080 AT2G44470.1 44.396 455 233 4 7 446 1 450 1.51e-139 410
Msa0685080 AT4G27830.1 44.444 477 243 8 35 500 19 484 3.12e-138 409
Msa0685080 AT5G25980.3 45.494 466 225 11 1 447 12 467 8.59e-137 403
Msa0685080 AT5G25980.1 45.494 466 225 11 1 447 12 467 8.59e-137 403
Msa0685080 AT4G27820.1 45.684 475 230 8 39 500 23 482 1.04e-135 402
Msa0685080 AT3G60140.2 47.583 393 190 3 38 415 25 416 1.77e-135 400
Msa0685080 AT1G60090.2 43.110 508 244 12 11 501 4 483 3.18e-135 400
Msa0685080 AT4G22100.1 44.654 477 235 9 41 503 24 485 5.96e-135 400
Msa0685080 AT1G02850.1 44.654 477 205 8 40 501 27 459 1.87e-134 397
Msa0685080 AT4G21760.2 43.432 472 243 8 44 500 59 521 1.71e-133 398
Msa0685080 AT1G60090.1 42.661 511 249 13 11 501 4 490 4.93e-133 395
Msa0685080 AT1G45191.4 44.754 467 241 7 40 501 30 484 5.96e-133 395
Msa0685080 AT1G61810.1 44.283 481 249 7 39 503 33 510 6.65e-132 393
Msa0685080 AT5G54570.2 47.202 411 197 6 107 500 1 408 1.85e-131 389
Msa0685080 AT2G44450.2 53.390 354 147 4 160 500 1 349 3.32e-131 385
Msa0685080 AT1G45191.6 43.724 478 241 9 40 501 30 495 1.18e-130 389
Msa0685080 AT2G44480.4 58.974 312 124 3 38 347 65 374 1.65e-130 385
Msa0685080 AT1G45191.2 44.118 476 237 9 40 501 30 490 1.11e-129 387
Msa0685080 AT4G21760.1 43.162 468 240 9 44 500 59 511 5.76e-129 386
Msa0685080 AT5G26000.2 47.406 424 195 9 43 447 42 456 2.37e-128 381
Msa0685080 AT1G45191.1 43.093 485 246 10 40 501 30 507 4.74e-128 383
Msa0685080 AT1G61810.3 44.086 465 241 7 39 487 33 494 1.14e-124 375
Msa0685080 AT3G62750.1 41.139 474 250 9 36 500 20 473 2.24e-123 370
Msa0685080 AT1G52400.2 44.298 456 231 7 9 446 10 460 3.90e-123 368
Msa0685080 AT3G62750.2 41.139 474 250 9 36 500 46 499 6.84e-123 370
Msa0685080 AT3G62740.1 39.709 481 268 8 28 500 12 478 6.06e-119 359
Msa0685080 AT2G44470.2 45.745 376 188 3 30 390 20 394 1.06e-118 355
Msa0685080 AT1G02850.3 45.721 409 174 7 40 411 27 424 2.13e-117 353
Msa0685080 AT3G18070.4 50.000 346 158 6 31 374 22 354 2.83e-112 338
Msa0685080 AT5G48375.1 43.636 440 163 11 39 462 38 408 2.15e-111 337
Msa0685080 AT4G27830.2 43.704 405 208 7 107 500 1 396 1.18e-110 335
Msa0685080 AT1G60270.1 47.977 346 166 6 11 354 1 334 8.23e-109 328
Msa0685080 AT4G27820.2 44.472 407 203 7 107 500 1 397 1.29e-107 327
Msa0685080 AT4G27820.3 44.472 407 203 7 107 500 1 397 1.29e-107 327
Msa0685080 AT1G61810.5 43.873 408 210 7 112 503 6 410 3.34e-106 323
Msa0685080 AT1G61810.4 44.730 389 197 6 39 411 33 419 2.27e-105 321
Msa0685080 AT1G45191.3 49.062 320 153 4 40 357 30 341 2.47e-105 321
Msa0685080 AT1G45191.5 49.062 320 153 4 40 357 30 341 3.15e-105 320
Msa0685080 AT2G44460.2 46.240 359 176 4 158 500 1 358 7.22e-105 320
Msa0685080 AT3G62750.4 39.953 428 229 8 36 455 46 453 1.21e-104 321
Msa0685080 AT3G62740.2 39.437 426 237 7 28 446 12 423 8.67e-102 312
Msa0685080 AT1G51490.1 46.087 345 164 6 46 378 27 361 7.38e-101 309
Msa0685080 AT3G62750.7 44.892 323 164 5 36 358 20 328 1.83e-97 299
Msa0685080 AT3G62750.8 44.892 323 164 5 36 358 20 328 1.83e-97 299
Msa0685080 AT3G18070.2 46.505 329 154 6 191 503 100 422 3.70e-97 300
Msa0685080 AT3G18070.2 54.930 71 31 1 31 101 22 91 1.06e-17 85.9
Msa0685080 AT1G61820.3 43.597 367 189 6 153 503 4 368 8.24e-97 298
Msa0685080 AT3G62750.3 44.892 323 164 5 36 358 46 354 2.08e-96 299
Msa0685080 AT3G62750.6 39.702 403 219 8 107 500 1 388 4.90e-96 297
Msa0685080 AT3G62750.5 39.702 403 219 8 107 500 1 388 4.90e-96 297
Msa0685080 AT2G44480.5 47.195 303 146 3 211 500 1 302 1.47e-93 287
Msa0685080 AT3G18070.7 45.886 316 149 6 204 503 1 310 1.87e-91 281
Msa0685080 AT1G61810.2 50.370 270 130 3 39 306 33 300 2.69e-87 271
Msa0685080 AT1G60270.2 49.600 250 121 3 107 354 1 247 4.39e-80 251
Msa0685080 AT3G18070.5 46.025 239 110 4 191 413 100 335 3.76e-65 214
Msa0685080 AT3G18070.5 54.930 71 31 1 31 101 22 91 5.19e-18 85.9
Msa0685080 AT3G18070.6 45.133 226 105 4 204 413 1 223 1.73e-59 196
Msa0685080 AT5G16580.1 39.007 282 154 4 185 457 27 299 1.10e-52 181
Msa0685080 AT3G06510.1 25.917 409 237 13 102 501 159 510 3.60e-26 112
Msa0685080 AT3G06510.2 25.346 434 242 15 102 501 159 544 1.88e-23 104

Find 114 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTTAATTTCAGGTTTA+TGG 0.066072 4_4:-49120899 Msa0685080:intron
TTTCCACGTGGCTTCATCTT+TGG 0.183969 4_4:-49126229 Msa0685080:CDS
TGATTATGTGTAACTATATA+AGG 0.212347 4_4:+49122299 None:intergenic
TTCCACGTGGCTTCATCTTT+GGG 0.217307 4_4:-49126228 Msa0685080:CDS
ACATGTTTGGGTGGTAATTC+TGG 0.227903 4_4:-49122329 Msa0685080:CDS
ACAATTGCAGTTGAACAAAA+TGG 0.236440 4_4:-49120561 Msa0685080:intron
GACTTACTTGGGAGTATTCT+TGG 0.244929 4_4:+49122944 None:intergenic
AGATCACTTGACTTCCAATT+TGG 0.245781 4_4:-49122022 Msa0685080:CDS
TTCTGTAGAAGAAGCTCTTT+TGG 0.269060 4_4:-49120036 Msa0685080:CDS
TAATTAATTACCATCCAAAT+TGG 0.278065 4_4:+49122008 None:intergenic
CATTGCCTTGTGGAGGTAAA+TGG 0.282756 4_4:+49120731 None:intergenic
GCATAACATTGGTAACAAAT+TGG 0.283831 4_4:-49122093 Msa0685080:CDS
TTGTATAGGCTGCTTCAATT+TGG 0.290045 4_4:-49120360 Msa0685080:intron
GACTGTAATGAATGGTTTGC+AGG 0.311829 4_4:-49119726 Msa0685080:CDS
GCAGGCTTTACTGTTCGTTT+TGG 0.320577 4_4:-49119708 Msa0685080:CDS
GTGGTAGAGGACCAAGTATC+TGG 0.325786 4_4:-49125607 Msa0685080:CDS
ATGTTCTAGCCCAACATGTT+TGG 0.329686 4_4:-49122342 Msa0685080:CDS
GATTATGAAGGATCAGAATA+TGG 0.342816 4_4:-49122993 Msa0685080:CDS
GTGGTCTACATTACTGAAAA+TGG 0.345716 4_4:-49120271 Msa0685080:intron
GATCTTTGCTTCAAGGAATT+CGG 0.349501 4_4:-49122452 Msa0685080:CDS
TACCATTGAGCAGAAAGCTT+TGG 0.350960 4_4:+49119645 None:intergenic
CTATGCTGATCTTTGCTTCA+AGG 0.368377 4_4:-49122459 Msa0685080:CDS
TGTTCTAGCCCAACATGTTT+GGG 0.369906 4_4:-49122341 Msa0685080:CDS
GGATAATCTCCGGTTGTTAG+AGG 0.377413 4_4:+49120874 None:intergenic
ACCATTGAGCAGAAAGCTTT+GGG 0.379817 4_4:+49119646 None:intergenic
GCATATCAAAAGGGCAAGAT+AGG 0.386935 4_4:-49122115 Msa0685080:CDS
AACTTTGTAGATTACAATGA+TGG 0.387322 4_4:-49119681 Msa0685080:CDS
TGACCAATACCATCGCTATA+AGG 0.400152 4_4:-49124182 Msa0685080:intron
AAAAGATCTCGAAGTCCTCT+TGG 0.415218 4_4:+49120325 None:intergenic
CGTGGCTTCATCTTTGGGGC+GGG 0.423208 4_4:-49126223 Msa0685080:CDS
TCGGAGATAGAGTGAAGTAC+TGG 0.425135 4_4:-49122433 Msa0685080:CDS
ATACTCGTCTTCTAAGACTT+GGG 0.426002 4_4:+49122602 None:intergenic
TGTGTATAAGATCAAGTATC+AGG 0.435270 4_4:-49122249 Msa0685080:intron
CAACCTCATCAACGAATTGT+TGG 0.435996 4_4:-49122782 Msa0685080:CDS
AAGTGTGCAGGCATATCAAA+AGG 0.439406 4_4:-49122125 Msa0685080:intron
AAACCAAATATGGTATTCAT+TGG 0.445254 4_4:-49126367 None:intergenic
ATCAACGAATTGTTGGCTAA+TGG 0.451216 4_4:-49122775 Msa0685080:intron
CAATAGCATACCCGATCAAA+AGG 0.455559 4_4:-49122053 Msa0685080:CDS
GCACCAGCTTCAAACAATAT+AGG 0.456067 4_4:+49119596 None:intergenic
ATTTAGTGAACTTAGGCAAT+CGG 0.457331 4_4:+49120824 None:intergenic
TTGGAAGTCAAGTGATCTCT+TGG 0.460981 4_4:+49122027 None:intergenic
CAAACATGTATATAGTTTGA+AGG 0.469332 4_4:-49125644 Msa0685080:intron
TATTACTACAGGAAGATGTT+GGG 0.470013 4_4:-49123015 Msa0685080:intron
TTATTACTACAGGAAGATGT+TGG 0.473846 4_4:-49123016 Msa0685080:intron
CCTATAGATTCTCAATCGCT+TGG 0.475831 4_4:-49122967 Msa0685080:CDS
CAAGTCTTAGAAGACGAGTA+TGG 0.476058 4_4:-49122600 Msa0685080:CDS
ACCCAAAGCTTTCTGCTCAA+TGG 0.488244 4_4:-49119647 Msa0685080:CDS
CCAAGCGATTGAGAATCTAT+AGG 0.495495 4_4:+49122967 None:intergenic
CAGGGCCGGCTCGAATGTAA+AGG 0.500785 4_4:-49119772 Msa0685080:CDS
GATTGCAATTTAGTGAACTT+AGG 0.503385 4_4:+49120817 None:intergenic
GTGAAGGTGTCCCAGATACT+TGG 0.503819 4_4:+49125596 None:intergenic
CATACTCGTCTTCTAAGACT+TGG 0.503889 4_4:+49122601 None:intergenic
AATTACCACCCAAACATGTT+GGG 0.506442 4_4:+49122333 None:intergenic
GTACCTTATAGCGATGGTAT+TGG 0.507757 4_4:+49124179 None:intergenic
GTCACACTTACTTTCGCAAA+CGG 0.507884 4_4:-49126301 Msa0685080:CDS
CACTTGACTTCCAATTTGGA+TGG 0.509427 4_4:-49122018 Msa0685080:intron
TCCACGTGGCTTCATCTTTG+GGG 0.509644 4_4:-49126227 Msa0685080:CDS
AGCAATGGTGGATATGCAAT+GGG 0.510047 4_4:-49122383 Msa0685080:CDS
AGTCCTATATTGTTTGAAGC+TGG 0.511064 4_4:-49119599 Msa0685080:three_prime_UTR
ACAAATTGGTTCATACCACT+TGG 0.515567 4_4:-49122079 Msa0685080:CDS
TTTATGGAACCTCTAACAAC+CGG 0.516409 4_4:-49120883 Msa0685080:CDS
CTATGATCATATATATTAGT+TGG 0.516737 4_4:-49119485 Msa0685080:three_prime_UTR
AAAATCAAACTGATATATGA+AGG 0.518983 4_4:+49119461 None:intergenic
CCATGGTTGTTTAGCAATGG+TGG 0.521328 4_4:-49122395 Msa0685080:CDS
AGGGCCGGCTCGAATGTAAA+GGG 0.522499 4_4:-49119771 Msa0685080:CDS
GTGGAAAACTACTCCGACTC+AGG 0.522539 4_4:+49126245 None:intergenic
TTGCAATCAAAGCTAGTGAA+TGG 0.522902 4_4:-49120802 Msa0685080:CDS
TTTGAAGGTGCAGTAAAGAA+AGG 0.523671 4_4:-49125629 Msa0685080:CDS
GAATTACCACCCAAACATGT+TGG 0.526460 4_4:+49122332 None:intergenic
TGATCATAGCTGCTGGTACA+AGG 0.532753 4_4:+49119499 None:intergenic
GCAGTAAAGAAAGGTGGTAG+AGG 0.538530 4_4:-49125620 Msa0685080:CDS
ACCTTCACCCATCAACATCC+AGG 0.542518 4_4:-49125581 Msa0685080:intron
ATGGAAAACCTCTAGGTCCA+AGG 0.542893 4_4:-49120542 Msa0685080:CDS
ATATATATGATCATAGCTGC+TGG 0.546503 4_4:+49119492 None:intergenic
AACAACAAAGAGAGCAAGCA+TGG 0.551044 4_4:+49126330 None:intergenic
ATTACAATGATGGATTGAAA+AGG 0.551309 4_4:-49119671 Msa0685080:CDS
AAAATAGAGGGGAAGTTGAG+TGG 0.552316 4_4:-49122838 Msa0685080:intron
GGGTTACATTTAACGAGCCA+TGG 0.553181 4_4:-49122412 Msa0685080:CDS
GAACAAAATGGAAAACCTCT+AGG 0.554211 4_4:-49120549 Msa0685080:CDS
TAGCCAACAATTCGTTGATG+AGG 0.556574 4_4:+49122779 None:intergenic
AAAATATTATTACTTGATTG+CGG 0.557783 4_4:+49119965 None:intergenic
ACGTGGCTTCATCTTTGGGG+CGG 0.566913 4_4:-49126224 Msa0685080:CDS
TGGTAGAGGACCAAGTATCT+GGG 0.567259 4_4:-49125606 Msa0685080:CDS
TTGACATCGGCAACCTGAGT+CGG 0.575732 4_4:-49126258 Msa0685080:CDS
GAGCCATGGTTGTTTAGCAA+TGG 0.578752 4_4:-49122398 Msa0685080:CDS
CTCAGGTTGCCGATGTCAAG+AGG 0.581408 4_4:+49126262 None:intergenic
AAATCCCTTTACATTCGAGC+CGG 0.581654 4_4:+49119767 None:intergenic
TGGAAAACCTCTAGGTCCAA+GGG 0.581920 4_4:-49120541 Msa0685080:intron
GGAAGATGTTGGGATTATGA+AGG 0.590173 4_4:-49123005 Msa0685080:CDS
CGGAGATAGAGTGAAGTACT+GGG 0.599926 4_4:-49122432 Msa0685080:CDS
GAAGGTGCAGTAAAGAAAGG+TGG 0.607156 4_4:-49125626 Msa0685080:CDS
AGTGTGCAGGCATATCAAAA+GGG 0.608518 4_4:-49122124 Msa0685080:intron
CTTGGAGGAGCATTGCCTTG+TGG 0.612202 4_4:+49120721 None:intergenic
GCAATGGGAACAACAGCACC+AGG 0.613253 4_4:-49122368 Msa0685080:CDS
TGGATATACGTTTATCCAAG+AGG 0.618701 4_4:-49120340 Msa0685080:CDS
AGTGGAGGCATAAATCATGA+AGG 0.618703 4_4:-49122820 Msa0685080:CDS
GGAGGAGCATTGCCTTGTGG+AGG 0.623056 4_4:+49120724 None:intergenic
GGGCAAGATAGGCATAACAT+TGG 0.623136 4_4:-49122104 Msa0685080:CDS
ACCTGGATGTTGATGGGTGA+AGG 0.626176 4_4:+49125580 None:intergenic
TACTCGTCTTCTAAGACTTG+GGG 0.626972 4_4:+49122603 None:intergenic
AGACTTACCCTTGGACCTAG+AGG 0.628477 4_4:+49120534 None:intergenic
GTTTCAACTCCTCTTGACAT+CGG 0.629562 4_4:-49126271 Msa0685080:CDS
GAGCTAGTACCTTATAGCGA+TGG 0.633224 4_4:+49124173 None:intergenic
GTCTTAGAAGACGAGTATGG+TGG 0.639976 4_4:-49122597 Msa0685080:CDS
ATAGAGGGGAAGTTGAGTGG+AGG 0.640276 4_4:-49122835 Msa0685080:intron
ATTCATTGGCTATTTCAATG+TGG 0.649386 4_4:-49126353 Msa0685080:CDS
TAGCAATGGTGGATATGCAA+TGG 0.649852 4_4:-49122384 Msa0685080:CDS
TCTAGCCCAACATGTTTGGG+TGG 0.652575 4_4:-49122338 Msa0685080:CDS
CCACCATTGCTAAACAACCA+TGG 0.670286 4_4:+49122395 None:intergenic
GCCCCAAAGATGAAGCCACG+TGG 0.674470 4_4:+49126226 None:intergenic
ATTAACCATTTACCTCCACA+AGG 0.685327 4_4:-49120736 Msa0685080:CDS
GGTATGCTATTGTTTCCAAG+TGG 0.687798 4_4:+49122064 None:intergenic
GGAGAAATACAACAATCCTG+TGG 0.705074 4_4:-49120290 Msa0685080:CDS
GTTGGGCTAGAACATCGACC+TGG 0.733866 4_4:+49122350 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAACC+TGG + chr4_4:49120219-49120238 None:intergenic 10.0%
!! CTTTATTAAAAAGTTTAATT+TGG + chr4_4:49121045-49121064 None:intergenic 10.0%
!!! TTTTAAATGTAGAAAAAATA+AGG - chr4_4:49121548-49121567 Msa0685080:intron 10.0%
!! TTTAAATGTAGAAAAAATAA+GGG - chr4_4:49121549-49121568 Msa0685080:intron 10.0%
!! TAATAATTCCTATTTAATAT+AGG + chr4_4:49121635-49121654 None:intergenic 10.0%
!! TATATTTAATGATAACTTAA+GGG - chr4_4:49121680-49121699 Msa0685080:intron 10.0%
!! AAAATCCTATTTATTATTAT+AGG + chr4_4:49121715-49121734 None:intergenic 10.0%
!!! AATAAAAAATTTGTTGTTTT+CGG + chr4_4:49121742-49121761 None:intergenic 10.0%
!! TTATATTATATATAATTTGG+AGG + chr4_4:49122181-49122200 None:intergenic 10.0%
!! AAGAATTAAAAAAGAATTAA+TGG - chr4_4:49122372-49122391 Msa0685080:CDS 10.0%
!! TAATATATGAAAATTATACA+TGG + chr4_4:49122493-49122512 None:intergenic 10.0%
!!! AATTAATTATTGATTTGTTT+TGG - chr4_4:49122646-49122665 Msa0685080:intron 10.0%
!! TATATTAAATTTATTACTAC+AGG - chr4_4:49122753-49122772 Msa0685080:intron 10.0%
!!! TTTATTTTAAATTGTTTGAT+TGG - chr4_4:49124862-49124881 Msa0685080:intron 10.0%
!! TATATCTATAATAATTGTAT+AGG - chr4_4:49125405-49125424 Msa0685080:intron 10.0%
!! TAGTTTCTCATATATTATAA+AGG + chr4_4:49120051-49120070 None:intergenic 15.0%
!! TAAATGTTTACATTCAAATA+TGG + chr4_4:49120390-49120409 None:intergenic 15.0%
!!! ATTTAAAACTTGTTAATCAT+GGG - chr4_4:49120405-49120424 Msa0685080:intron 15.0%
!!! AAATATATTTTATTGCAAGT+CGG + chr4_4:49120446-49120465 None:intergenic 15.0%
!!! GATATCATTTTTTTTTTTGA+GGG + chr4_4:49120974-49120993 None:intergenic 15.0%
!!! TGATATCATTTTTTTTTTTG+AGG + chr4_4:49120975-49120994 None:intergenic 15.0%
!!! AACTTTTTAATAAAGACAAA+AGG - chr4_4:49121050-49121069 Msa0685080:intron 15.0%
!! CAAAAGATAATCTATTTAAA+TGG + chr4_4:49121334-49121353 None:intergenic 15.0%
!! GTATATTTAATGATAACTTA+AGG - chr4_4:49121679-49121698 Msa0685080:intron 15.0%
!! TTATATTGTAAAGTGATAAA+AGG + chr4_4:49121786-49121805 None:intergenic 15.0%
!!! TTATATTAGTTTCTTTAACT+AGG - chr4_4:49121811-49121830 Msa0685080:intron 15.0%
!!! GTTTTAAAAAAAACAAAAGA+GGG + chr4_4:49121858-49121877 None:intergenic 15.0%
!!! TGTTTTAAAAAAAACAAAAG+AGG + chr4_4:49121859-49121878 None:intergenic 15.0%
!!! AAAATCCTACAATTTATTTT+AGG + chr4_4:49122263-49122282 None:intergenic 15.0%
!! AATCAAAACAACAATATTAT+AGG + chr4_4:49122419-49122438 None:intergenic 15.0%
!!! GTTTTTAACATAATATTTTC+TGG - chr4_4:49122876-49122895 Msa0685080:intron 15.0%
!!! TTTTTATGAAGTAAAATTGT+TGG + chr4_4:49122925-49122944 None:intergenic 15.0%
!!! ATTTTACTTCATAAAAATAG+AGG - chr4_4:49122928-49122947 Msa0685080:intron 15.0%
!!! TTTTACTTCATAAAAATAGA+GGG - chr4_4:49122929-49122948 Msa0685080:intron 15.0%
!! ACAAAATTTAACAAATAGTT+TGG + chr4_4:49123050-49123069 None:intergenic 15.0%
!! CAAATATTCATAATATATGT+CGG - chr4_4:49123104-49123123 Msa0685080:intron 15.0%
!! ATGTATAGATAACTATAATT+TGG - chr4_4:49123270-49123289 Msa0685080:intron 15.0%
!! AAATAAACTACAAAATTAAC+CGG - chr4_4:49124082-49124101 Msa0685080:intron 15.0%
!! CAAATGTATCAAAATATTAA+AGG - chr4_4:49124822-49124841 Msa0685080:intron 15.0%
!!! AAACATACATTTTGTATAAT+AGG + chr4_4:49125602-49125621 None:intergenic 15.0%
!! AAAATATTATTACTTGATTG+CGG + chr4_4:49125817-49125836 None:intergenic 15.0%
!!! ATTTATGAATTTTCATTTAC+AGG - chr4_4:49125988-49126007 Msa0685080:intron 15.0%
!!! TTTATGAATTTTCATTTACA+GGG - chr4_4:49125989-49126008 Msa0685080:intron 15.0%
!!! AAGATTAACAACTTTTATTT+AGG + chr4_4:49126229-49126248 None:intergenic 15.0%
!! CAAAATTGGTTAACATTATT+TGG + chr4_4:49119894-49119913 None:intergenic 20.0%
!!! AATAATGTTAACCAATTTTG+AGG - chr4_4:49119894-49119913 Msa0685080:intron 20.0%
!!! TGATTTAGAAAAGCTTTTAT+TGG - chr4_4:49119927-49119946 Msa0685080:intron 20.0%
!! AACTAGAAATTGAAATTAAC+TGG + chr4_4:49120313-49120332 None:intergenic 20.0%
!!! CATTTAAAACTTGTTAATCA+TGG - chr4_4:49120404-49120423 Msa0685080:intron 20.0%
!! TTTGCATATCTTAATCTTAA+AGG + chr4_4:49120494-49120513 None:intergenic 20.0%
!!! GTTTGTTTGTTTTATTTTAC+CGG - chr4_4:49120641-49120660 Msa0685080:intron 20.0%
!! TGATTTATGTATATCAAACT+TGG + chr4_4:49121115-49121134 None:intergenic 20.0%
!! AGATAATCTATTTAAATGGA+GGG + chr4_4:49121330-49121349 None:intergenic 20.0%
!! AAGATAATCTATTTAAATGG+AGG + chr4_4:49121331-49121350 None:intergenic 20.0%
!! AATTCCTATTTAATATAGGA+CGG + chr4_4:49121631-49121650 None:intergenic 20.0%
!!! ATCATTAATCAATTTGAAGT+GGG + chr4_4:49121993-49122012 None:intergenic 20.0%
!! TATCATTAATCAATTTGAAG+TGG + chr4_4:49121994-49122013 None:intergenic 20.0%
!!! TTGTTGGTAATAAAAAACAA+TGG - chr4_4:49122067-49122086 Msa0685080:CDS 20.0%
!! AACAAATGACTAATCAAATT+TGG + chr4_4:49122218-49122237 None:intergenic 20.0%
!!! TTTGATTAGTCATTTGTTAT+CGG - chr4_4:49122220-49122239 Msa0685080:intron 20.0%
!!! TATGCTTACATTTTTTTTGA+AGG + chr4_4:49122312-49122331 None:intergenic 20.0%
!! TCAAAATAATAAGATTGCAT+TGG - chr4_4:49122519-49122538 Msa0685080:intron 20.0%
!! TTAACACATGTAATATGAAT+TGG - chr4_4:49122623-49122642 Msa0685080:CDS 20.0%
!!! ATTTCATTCCATTTTTTTTG+AGG - chr4_4:49122673-49122692 Msa0685080:intron 20.0%
!!! TTTCATTCCATTTTTTTTGA+GGG - chr4_4:49122674-49122693 Msa0685080:intron 20.0%
!!! TTAACATAATATTTTCTGGT+TGG - chr4_4:49122880-49122899 Msa0685080:intron 20.0%
!! TTTACTTCATAAAAATAGAG+GGG - chr4_4:49122930-49122949 Msa0685080:intron 20.0%
!! ATGGTAACATTCAAAATTTA+CGG - chr4_4:49123023-49123042 Msa0685080:intron 20.0%
!! TGATTATGTGTAACTATATA+AGG + chr4_4:49123483-49123502 None:intergenic 20.0%
!!! TCCTTGTTTTTAAACAAATT+TGG - chr4_4:49123590-49123609 Msa0685080:intron 20.0%
!!! TCCAAATTTGTTTAAAAACA+AGG + chr4_4:49123594-49123613 None:intergenic 20.0%
!! TAATTAATTACCATCCAAAT+TGG + chr4_4:49123774-49123793 None:intergenic 20.0%
!!! ATAAAGACACTTTTTTTTTG+TGG - chr4_4:49124032-49124051 Msa0685080:intron 20.0%
!!! TTTGTAGTTTATTTTCACTT+GGG + chr4_4:49124076-49124095 None:intergenic 20.0%
!!! TTTTGTAGTTTATTTTCACT+TGG + chr4_4:49124077-49124096 None:intergenic 20.0%
!!! ATCATTTGATTTGATTGTTT+TGG + chr4_4:49124178-49124197 None:intergenic 20.0%
!!! TAATTTTAGTTCATCTTATC+AGG + chr4_4:49124298-49124317 None:intergenic 20.0%
!!! TTAAATGTATGTATGGATTT+TGG + chr4_4:49124774-49124793 None:intergenic 20.0%
!!! AATGGTTCATTTGATTTTAT+TGG - chr4_4:49124995-49125014 Msa0685080:intron 20.0%
!!! ATATTCTTTCAAATTAGTCT+AGG + chr4_4:49125680-49125699 None:intergenic 20.0%
!! CTATGATCATATATATTAGT+TGG - chr4_4:49126294-49126313 Msa0685080:CDS 20.0%
!! AAAATCAAACTGATATATGA+AGG + chr4_4:49126321-49126340 None:intergenic 20.0%
! CAACAAAATATGTACATACT+TGG + chr4_4:49119594-49119613 None:intergenic 25.0%
!! AAAAATCGTGAAACGATTTT+AGG + chr4_4:49119774-49119793 None:intergenic 25.0%
!!! GTTACATGATTTTAGAATCA+TGG + chr4_4:49119863-49119882 None:intergenic 25.0%
!! AAAAGTTTTTGCCTCAAAAT+TGG + chr4_4:49119908-49119927 None:intergenic 25.0%
!! TTAGAAAAGCTTTTATTGGT+TGG - chr4_4:49119931-49119950 Msa0685080:intron 25.0%
! AATTCACGAGTTTAATTACA+AGG + chr4_4:49119992-49120011 None:intergenic 25.0%
! ACATACAAAATGTTAATGAG+AGG - chr4_4:49120012-49120031 Msa0685080:CDS 25.0%
! CAAACATGTATATAGTTTGA+AGG - chr4_4:49120135-49120154 Msa0685080:intron 25.0%
! ATATCTTAATCTTAAAGGAG+AGG + chr4_4:49120489-49120508 None:intergenic 25.0%
!! TTTTAATAGCCATAGTATGT+AGG - chr4_4:49120615-49120634 Msa0685080:intron 25.0%
!!! TTGTTTTTTGTTGAAGAATC+CGG - chr4_4:49120695-49120714 Msa0685080:intron 25.0%
!!! TCGTCTTTTAAGAAAATATC+CGG - chr4_4:49120897-49120916 Msa0685080:intron 25.0%
!! TTTAAAGAATTTTGCTCTAC+CGG + chr4_4:49120919-49120938 None:intergenic 25.0%
! TATATCAAACTTGTATAGCA+TGG + chr4_4:49121018-49121037 None:intergenic 25.0%
!! TATTATACCTTTTGTCATTG+AGG + chr4_4:49121152-49121171 None:intergenic 25.0%
! ACATGTTTAATCAAAACATC+TGG + chr4_4:49121404-49121423 None:intergenic 25.0%
! AATGTAGAAAAAATAAGGGA+TGG - chr4_4:49121553-49121572 Msa0685080:intron 25.0%
! TGGTGCCTATAATAATAAAT+AGG - chr4_4:49121707-49121726 Msa0685080:intron 25.0%
! TATTGTAAAGTGATAAAAGG+TGG + chr4_4:49121783-49121802 None:intergenic 25.0%
!! TCATTAATCAATTTGAAGTG+GGG + chr4_4:49121992-49122011 None:intergenic 25.0%
! AACAAAAAGAGAAACATTGA+AGG + chr4_4:49122052-49122071 None:intergenic 25.0%
!! TTCAATGTTTCTCTTTTTGT+TGG - chr4_4:49122051-49122070 Msa0685080:CDS 25.0%
! GAGTACCTAAAATAAATTGT+AGG - chr4_4:49122255-49122274 Msa0685080:CDS 25.0%
! ATGTAAGCATACACTATTAA+TGG - chr4_4:49122321-49122340 Msa0685080:CDS 25.0%
! TGAAATTCCCTCAAAAAAAA+TGG + chr4_4:49122684-49122703 None:intergenic 25.0%
!!! GATCAAATTTTGACTTACTT+GGG + chr4_4:49122849-49122868 None:intergenic 25.0%
!!! TGATCAAATTTTGACTTACT+TGG + chr4_4:49122850-49122869 None:intergenic 25.0%
!! ATATATGTCGGTGAAATTTT+AGG - chr4_4:49123116-49123135 Msa0685080:intron 25.0%
!!! ATTCGTAACTCTTTTTCATT+GGG - chr4_4:49123148-49123167 Msa0685080:intron 25.0%
! TAGGCAAATGATATTTGAAA+TGG + chr4_4:49123237-49123256 None:intergenic 25.0%
!!! TTTTTTTGTGGTACAAAAAG+AGG - chr4_4:49124044-49124063 Msa0685080:intron 25.0%
!!! TTTTTTGTGGTACAAAAAGA+GGG - chr4_4:49124045-49124064 Msa0685080:intron 25.0%
! AGATATTGAAGAATACTACT+TGG + chr4_4:49124651-49124670 None:intergenic 25.0%
!!! TCAATATCTCTAAAACACTT+TGG - chr4_4:49124662-49124681 Msa0685080:intron 25.0%
!! GAAGTGTTTAAATGTATGTA+TGG + chr4_4:49124781-49124800 None:intergenic 25.0%
! CATACATTTAAACACTTCAT+AGG - chr4_4:49124783-49124802 Msa0685080:intron 25.0%
! TTTAAACACTTCATAGGTTA+AGG - chr4_4:49124789-49124808 Msa0685080:intron 25.0%
!! TTGTTTGATTGGTTAATTTC+AGG - chr4_4:49124873-49124892 Msa0685080:intron 25.0%
!!! ATTGGTTAATTTCAGGTTTA+TGG - chr4_4:49124880-49124899 Msa0685080:intron 25.0%
!! TTACATGAAGTATTAGTCAT+AGG + chr4_4:49125097-49125116 None:intergenic 25.0%
! TATGACTAATACTTCATGTA+AGG - chr4_4:49125096-49125115 Msa0685080:intron 25.0%
! TTAAAGCAACTAATTAACAC+AGG + chr4_4:49125146-49125165 None:intergenic 25.0%
!!! AGATCTTTTGTTATACACAA+AGG - chr4_4:49125468-49125487 Msa0685080:intron 25.0%
! TATAAATTCTCCAGTTATGA+TGG + chr4_4:49125570-49125589 None:intergenic 25.0%
!! TTTCAAATTAGTCTAGGATA+AGG + chr4_4:49125674-49125693 None:intergenic 25.0%
! AGAATATGTATGATATGTAC+AGG - chr4_4:49125693-49125712 Msa0685080:intron 25.0%
! AACTTTGTAGATTACAATGA+TGG - chr4_4:49126098-49126117 Msa0685080:intron 25.0%
!!! ATTACAATGATGGATTGAAA+AGG - chr4_4:49126108-49126127 Msa0685080:intron 25.0%
!!! TTTTATTTAGGTGCTGAATT+TGG + chr4_4:49126217-49126236 None:intergenic 25.0%
! ATTCATTGGCTATTTCAATG+TGG - chr4_4:49119426-49119445 Msa0685080:three_prime_UTR 30.0%
CTGTATAGAGTAATTCTTCT+TGG - chr4_4:49119643-49119662 Msa0685080:CDS 30.0%
! CACTAGTTTAAGCACTATTA+AGG + chr4_4:49119679-49119698 None:intergenic 30.0%
!!! GTGACATGATTTTAGAATCA+TGG + chr4_4:49119833-49119852 None:intergenic 30.0%
AAAAAAACCTGGATGTTGAT+GGG + chr4_4:49120208-49120227 None:intergenic 30.0%
AAAAAAAACCTGGATGTTGA+TGG + chr4_4:49120209-49120228 None:intergenic 30.0%
CTAACATACAGAGAAAACAA+AGG - chr4_4:49120269-49120288 Msa0685080:intron 30.0%
! TATTTTATTGCAAGTCGGTT+AGG + chr4_4:49120441-49120460 None:intergenic 30.0%
!!! CATTTACGAACTTTTCAAGT+AGG + chr4_4:49120537-49120556 None:intergenic 30.0%
ACAAACAAACCTACATACTA+TGG + chr4_4:49120627-49120646 None:intergenic 30.0%
!!! TGTTTTATTTTACCGGTAGT+AGG - chr4_4:49120648-49120667 Msa0685080:intron 30.0%
AAAAAAAACCTACCTACTAC+CGG + chr4_4:49120663-49120682 None:intergenic 30.0%
TATTAAAGTTAAGCACTCCA+CGG - chr4_4:49121078-49121097 Msa0685080:intron 30.0%
!! ACTTTTTCCTCAATGACAAA+AGG - chr4_4:49121142-49121161 Msa0685080:intron 30.0%
! ACTTAGCATATTTTATGCCA+TGG + chr4_4:49121198-49121217 None:intergenic 30.0%
CATAAAATATGCTAAGTGTG+AGG - chr4_4:49121201-49121220 Msa0685080:intron 30.0%
TAAGTTGTTCGTATGGAAAT+TGG + chr4_4:49121379-49121398 None:intergenic 30.0%
ATTATCCTTAGTCGTGAAAT+AGG - chr4_4:49121651-49121670 Msa0685080:intron 30.0%
AATGATAACTTAAGGGAAGT+TGG - chr4_4:49121687-49121706 Msa0685080:intron 30.0%
TTTCTTTAACTAGGTTTCCA+GGG - chr4_4:49121820-49121839 Msa0685080:intron 30.0%
!! GTCATTCAACTCTTTAAAGT+CGG + chr4_4:49121969-49121988 None:intergenic 30.0%
! CATTAATCAATTTGAAGTGG+GGG + chr4_4:49121991-49122010 None:intergenic 30.0%
TTATTACTACAGGAAGATGT+TGG - chr4_4:49122763-49122782 Msa0685080:intron 30.0%
TATTACTACAGGAAGATGTT+GGG - chr4_4:49122764-49122783 Msa0685080:intron 30.0%
GATTATGAAGGATCAGAATA+TGG - chr4_4:49122786-49122805 Msa0685080:CDS 30.0%
CAATGAAAAAGAGTTACGAA+TGG + chr4_4:49123149-49123168 None:intergenic 30.0%
!! CATTCGTAACTCTTTTTCAT+TGG - chr4_4:49123147-49123166 Msa0685080:intron 30.0%
TGTGTATAAGATCAAGTATC+AGG - chr4_4:49123530-49123549 Msa0685080:intron 30.0%
TTAAAAACAAGGACTAGAGA+CGG + chr4_4:49123583-49123602 None:intergenic 30.0%
TTAAAGTTACATAAGTGTGC+AGG - chr4_4:49123642-49123661 Msa0685080:intron 30.0%
! GCATAACATTGGTAACAAAT+TGG - chr4_4:49123686-49123705 Msa0685080:intron 30.0%
TATCAGGAAACTACTGAAAA+TGG + chr4_4:49124282-49124301 None:intergenic 30.0%
! CTGACAAGTTCAAGTTTAAT+GGG + chr4_4:49124322-49124341 None:intergenic 30.0%
! TCTGACAAGTTCAAGTTTAA+TGG + chr4_4:49124323-49124342 None:intergenic 30.0%
!! GCATTTTGATCATCTTATAG+TGG + chr4_4:49124378-49124397 None:intergenic 30.0%
ATTTAGTGAACTTAGGCAAT+CGG + chr4_4:49124958-49124977 None:intergenic 30.0%
GATTGCAATTTAGTGAACTT+AGG + chr4_4:49124965-49124984 None:intergenic 30.0%
ATAGGATCTGTTAAGTAACT+TGG + chr4_4:49125079-49125098 None:intergenic 30.0%
ACAATTGCAGTTGAACAAAA+TGG - chr4_4:49125218-49125237 Msa0685080:intron 30.0%
!! ATTTTTCGCATGGTCATTTT+TGG - chr4_4:49126031-49126050 Msa0685080:intron 30.0%
!! CATTTTTGGACTGTAATGAA+TGG - chr4_4:49126045-49126064 Msa0685080:intron 30.0%
ATATATATGATCATAGCTGC+TGG + chr4_4:49126290-49126309 None:intergenic 30.0%
! TTTGAAGGTGCAGTAAAGAA+AGG - chr4_4:49120150-49120169 Msa0685080:intron 35.0%
AATCTTAAAGGAGAGGAGTT+AGG + chr4_4:49120482-49120501 None:intergenic 35.0%
!! TTATTTTACCGGTAGTAGGT+AGG - chr4_4:49120652-49120671 Msa0685080:intron 35.0%
AAAGTTAATAAGCACCACCA+TGG - chr4_4:49121178-49121197 Msa0685080:intron 35.0%
! TAGCATATTTTATGCCATGG+TGG + chr4_4:49121195-49121214 None:intergenic 35.0%
CTATTTAAATGGAGGGTCTA+TGG + chr4_4:49121323-49121342 None:intergenic 35.0%
AGCTCCGTCCTATATTAAAT+AGG - chr4_4:49121624-49121643 Msa0685080:intron 35.0%
TTTCTCCTATTTCACGACTA+AGG + chr4_4:49121659-49121678 None:intergenic 35.0%
GTTTCTTTAACTAGGTTTCC+AGG - chr4_4:49121819-49121838 Msa0685080:intron 35.0%
! ATCAACGAATTGTTGGCTAA+TGG - chr4_4:49123004-49123023 Msa0685080:CDS 35.0%
!! ATACTCGTCTTCTAAGACTT+GGG + chr4_4:49123180-49123199 None:intergenic 35.0%
ATACATTGAATCGCTATGCT+AGG + chr4_4:49123256-49123275 None:intergenic 35.0%
GATCTTTGCTTCAAGGAATT+CGG - chr4_4:49123327-49123346 Msa0685080:intron 35.0%
AATTACCACCCAAACATGTT+GGG + chr4_4:49123449-49123468 None:intergenic 35.0%
! ACAAATTGGTTCATACCACT+TGG - chr4_4:49123700-49123719 Msa0685080:intron 35.0%
AGATCACTTGACTTCCAATT+TGG - chr4_4:49123757-49123776 Msa0685080:intron 35.0%
!! TCTAATACACCGATTCCATT+TGG - chr4_4:49123878-49123897 Msa0685080:intron 35.0%
AGAGTGTATCCAAATGGAAT+CGG + chr4_4:49123890-49123909 None:intergenic 35.0%
! TCTGAAAGAGTGTATCCAAA+TGG + chr4_4:49123896-49123915 None:intergenic 35.0%
TTTGGATACACTCTTTCAGA+CGG - chr4_4:49123896-49123915 Msa0685080:intron 35.0%
TTCAGAGGTGAAGAAAATGA+TGG + chr4_4:49123929-49123948 None:intergenic 35.0%
!! TTTCTTCACCTCTGAAACAA+AGG - chr4_4:49123933-49123952 Msa0685080:intron 35.0%
TCCATTCGAAATGATGCATT+GGG - chr4_4:49123979-49123998 Msa0685080:intron 35.0%
!!! ACGAGAGTTTTAGAAATTGC+TGG - chr4_4:49124007-49124026 Msa0685080:intron 35.0%
AAAATTAACCGGACATTCCT+AGG - chr4_4:49124093-49124112 Msa0685080:intron 35.0%
GTTGTATTTGGGTATAGAGA+TGG + chr4_4:49124411-49124430 None:intergenic 35.0%
AAAGGCTACACTAAGAAGAT+TGG + chr4_4:49124467-49124486 None:intergenic 35.0%
!! GCAGATGGTAAATGGATTAA+AGG + chr4_4:49124485-49124504 None:intergenic 35.0%
TTTGTGATGCAGATGGTAAA+TGG + chr4_4:49124493-49124512 None:intergenic 35.0%
!!! GGTATTTTTTGTGATGCAGA+TGG + chr4_4:49124500-49124519 None:intergenic 35.0%
ACAAAAAATACCACCACAAC+TGG - chr4_4:49124508-49124527 Msa0685080:intron 35.0%
GTGAAGGACACTATTTACAT+AGG + chr4_4:49124605-49124624 None:intergenic 35.0%
TAAATAGTGTCCTTCACCTT+AGG - chr4_4:49124608-49124627 Msa0685080:intron 35.0%
TTTATGGAACCTCTAACAAC+CGG - chr4_4:49124896-49124915 Msa0685080:intron 35.0%
!!! CATGCTTTTAGGATAATCTC+CGG + chr4_4:49124918-49124937 None:intergenic 35.0%
TTGCAATCAAAGCTAGTGAA+TGG - chr4_4:49124977-49124996 Msa0685080:intron 35.0%
ATTAACCATTTACCTCCACA+AGG - chr4_4:49125043-49125062 Msa0685080:intron 35.0%
GAACAAAATGGAAAACCTCT+AGG - chr4_4:49125230-49125249 Msa0685080:intron 35.0%
TTGTATAGGCTGCTTCAATT+TGG - chr4_4:49125419-49125438 Msa0685080:intron 35.0%
TGGATATACGTTTATCCAAG+AGG - chr4_4:49125439-49125458 Msa0685080:intron 35.0%
! TTTTCAGTAATGTAGACCAC+AGG + chr4_4:49125508-49125527 None:intergenic 35.0%
GTGGTCTACATTACTGAAAA+TGG - chr4_4:49125508-49125527 Msa0685080:intron 35.0%
TTCTTGAATGCCATCATAAC+TGG - chr4_4:49125557-49125576 Msa0685080:intron 35.0%
! TTCTGTAGAAGAAGCTCTTT+TGG - chr4_4:49125743-49125762 Msa0685080:intron 35.0%
! TGAATTTTCATTTACAGGGC+CGG - chr4_4:49125993-49126012 Msa0685080:intron 35.0%
! ATGTAAAGGGATTTTTCGCA+TGG - chr4_4:49126021-49126040 Msa0685080:intron 35.0%
! AGTCCTATATTGTTTGAAGC+TGG - chr4_4:49126180-49126199 Msa0685080:intron 35.0%
AACAACAAAGAGAGCAAGCA+TGG + chr4_4:49119452-49119471 None:intergenic 40.0%
GTCACACTTACTTTCGCAAA+CGG - chr4_4:49119478-49119497 Msa0685080:three_prime_UTR 40.0%
GTTTCAACTCCTCTTGACAT+CGG - chr4_4:49119508-49119527 Msa0685080:three_prime_UTR 40.0%
ATGGCACGATGATAGAATGT+GGG + chr4_4:49119814-49119833 None:intergenic 40.0%
TTGTTGAAGAATCCGGTAGT+AGG - chr4_4:49120702-49120721 Msa0685080:intron 40.0%
! ACTTGGCATATTTTATGCCG+TGG + chr4_4:49121098-49121117 None:intergenic 40.0%
TCTGGCATAAGTTGTTCGTA+TGG + chr4_4:49121386-49121405 None:intergenic 40.0%
TGACCAATACCATCGCTATA+AGG - chr4_4:49121597-49121616 Msa0685080:intron 40.0%
GTACCTTATAGCGATGGTAT+TGG + chr4_4:49121603-49121622 None:intergenic 40.0%
TTGTTATCGGATCACTCTCT+AGG - chr4_4:49122233-49122252 Msa0685080:intron 40.0%
GGAAGATGTTGGGATTATGA+AGG - chr4_4:49122774-49122793 Msa0685080:intron 40.0%
CCAAGCGATTGAGAATCTAT+AGG + chr4_4:49122815-49122834 None:intergenic 40.0%
CCTATAGATTCTCAATCGCT+TGG - chr4_4:49122812-49122831 Msa0685080:CDS 40.0%
!! GACTTACTTGGGAGTATTCT+TGG + chr4_4:49122838-49122857 None:intergenic 40.0%
AAAATAGAGGGGAAGTTGAG+TGG - chr4_4:49122941-49122960 Msa0685080:intron 40.0%
! AGTGGAGGCATAAATCATGA+AGG - chr4_4:49122959-49122978 Msa0685080:CDS 40.0%
CAACCTCATCAACGAATTGT+TGG - chr4_4:49122997-49123016 Msa0685080:CDS 40.0%
TAGCCAACAATTCGTTGATG+AGG + chr4_4:49123003-49123022 None:intergenic 40.0%
!! TACTCGTCTTCTAAGACTTG+GGG + chr4_4:49123179-49123198 None:intergenic 40.0%
!! CATACTCGTCTTCTAAGACT+TGG + chr4_4:49123181-49123200 None:intergenic 40.0%
CAAGTCTTAGAAGACGAGTA+TGG - chr4_4:49123179-49123198 Msa0685080:intron 40.0%
CTATGCTGATCTTTGCTTCA+AGG - chr4_4:49123320-49123339 Msa0685080:intron 40.0%
!! TAGCAATGGTGGATATGCAA+TGG - chr4_4:49123395-49123414 Msa0685080:intron 40.0%
!! AGCAATGGTGGATATGCAAT+GGG - chr4_4:49123396-49123415 Msa0685080:intron 40.0%
ATGTTCTAGCCCAACATGTT+TGG - chr4_4:49123437-49123456 Msa0685080:intron 40.0%
TGTTCTAGCCCAACATGTTT+GGG - chr4_4:49123438-49123457 Msa0685080:intron 40.0%
GAATTACCACCCAAACATGT+TGG + chr4_4:49123450-49123469 None:intergenic 40.0%
ACATGTTTGGGTGGTAATTC+TGG - chr4_4:49123450-49123469 Msa0685080:intron 40.0%
AAGTGTGCAGGCATATCAAA+AGG - chr4_4:49123654-49123673 Msa0685080:intron 40.0%
AGTGTGCAGGCATATCAAAA+GGG - chr4_4:49123655-49123674 Msa0685080:intron 40.0%
GCATATCAAAAGGGCAAGAT+AGG - chr4_4:49123664-49123683 Msa0685080:intron 40.0%
GGTATGCTATTGTTTCCAAG+TGG + chr4_4:49123718-49123737 None:intergenic 40.0%
CAATAGCATACCCGATCAAA+AGG - chr4_4:49123726-49123745 Msa0685080:intron 40.0%
TTGGAAGTCAAGTGATCTCT+TGG + chr4_4:49123755-49123774 None:intergenic 40.0%
CACTTGACTTCCAATTTGGA+TGG - chr4_4:49123761-49123780 Msa0685080:intron 40.0%
! GTGTATTAGAGATGGTAGTG+GGG + chr4_4:49123868-49123887 None:intergenic 40.0%
GGTGTATTAGAGATGGTAGT+GGG + chr4_4:49123869-49123888 None:intergenic 40.0%
TGGAATCGGTGTATTAGAGA+TGG + chr4_4:49123876-49123895 None:intergenic 40.0%
! CTTCAGATCCTTTGTTTCAG+AGG + chr4_4:49123944-49123963 None:intergenic 40.0%
GTCCATTCGAAATGATGCAT+TGG - chr4_4:49123978-49123997 Msa0685080:intron 40.0%
TCCCAATGCATCATTTCGAA+TGG + chr4_4:49123983-49124002 None:intergenic 40.0%
! CATGTTTGATGATATGTCCG+AGG + chr4_4:49124127-49124146 None:intergenic 40.0%
!!! CATGAACTTTTGAAGCTCAG+TGG - chr4_4:49124143-49124162 Msa0685080:intron 40.0%
GCTAAAACTAGCAAGCCAAT+TGG - chr4_4:49124208-49124227 Msa0685080:CDS 40.0%
AAGGAAATAGAAGGGCCAAT+TGG + chr4_4:49124226-49124245 None:intergenic 40.0%
TTTGCGCGAAGGAAATAGAA+GGG + chr4_4:49124234-49124253 None:intergenic 40.0%
TATTTCCTTCGCGCAAAGTA+TGG - chr4_4:49124237-49124256 Msa0685080:intron 40.0%
ATTTGGGTATAGAGATGGCT+TGG + chr4_4:49124406-49124425 None:intergenic 40.0%
TGCCTTATATGCTGAGATGT+GGG + chr4_4:49124435-49124454 None:intergenic 40.0%
ATGCCTTATATGCTGAGATG+TGG + chr4_4:49124436-49124455 None:intergenic 40.0%
AATACGACCCATATCCTTGT+AGG - chr4_4:49124532-49124551 Msa0685080:intron 40.0%
AACTTCATCCTACCTTCTTG+AGG - chr4_4:49124569-49124588 Msa0685080:intron 40.0%
!! ACTATGGCTTGCATGCTTTT+AGG + chr4_4:49124929-49124948 None:intergenic 40.0%
!! AGGCAATCGGTTTTTCACTA+TGG + chr4_4:49124945-49124964 None:intergenic 40.0%
GGATCTGTTAAGTAACTTGG+AGG + chr4_4:49125076-49125095 None:intergenic 40.0%
AGTTACTAGAGACTTACCCT+TGG + chr4_4:49125257-49125276 None:intergenic 40.0%
AAAAGATCTCGAAGTCCTCT+TGG + chr4_4:49125457-49125476 None:intergenic 40.0%
GGAGAAATACAACAATCCTG+TGG - chr4_4:49125489-49125508 Msa0685080:intron 40.0%
AAATCCCTTTACATTCGAGC+CGG + chr4_4:49126015-49126034 None:intergenic 40.0%
! GACTGTAATGAATGGTTTGC+AGG - chr4_4:49126053-49126072 Msa0685080:intron 40.0%
ACCATTGAGCAGAAAGCTTT+GGG + chr4_4:49126136-49126155 None:intergenic 40.0%
TACCATTGAGCAGAAAGCTT+TGG + chr4_4:49126137-49126156 None:intergenic 40.0%
GCACCAGCTTCAAACAATAT+AGG + chr4_4:49126186-49126205 None:intergenic 40.0%
TTTCCACGTGGCTTCATCTT+TGG - chr4_4:49119550-49119569 Msa0685080:three_prime_UTR 45.0%
TTCCACGTGGCTTCATCTTT+GGG - chr4_4:49119551-49119570 Msa0685080:three_prime_UTR 45.0%
CATGGCACGATGATAGAATG+TGG + chr4_4:49119815-49119834 None:intergenic 45.0%
! GAAGGTGCAGTAAAGAAAGG+TGG - chr4_4:49120153-49120172 Msa0685080:intron 45.0%
GCAGTAAAGAAAGGTGGTAG+AGG - chr4_4:49120159-49120178 Msa0685080:intron 45.0%
TGGTAGAGGACCAAGTATCT+GGG - chr4_4:49120173-49120192 Msa0685080:intron 45.0%
GAGAGGAGTTAGGTCTCAAA+AGG + chr4_4:49120472-49120491 None:intergenic 45.0%
TGAAGAATCCGGTAGTAGGT+AGG - chr4_4:49120706-49120725 Msa0685080:intron 45.0%
CATACCAACCTACCTACTAC+CGG + chr4_4:49120717-49120736 None:intergenic 45.0%
GAGCTAGTACCTTATAGCGA+TGG + chr4_4:49121609-49121628 None:intergenic 45.0%
GTCTTAGAAGACGAGTATGG+TGG - chr4_4:49123182-49123201 Msa0685080:intron 45.0%
TCGGAGATAGAGTGAAGTAC+TGG - chr4_4:49123346-49123365 Msa0685080:intron 45.0%
! CGGAGATAGAGTGAAGTACT+GGG - chr4_4:49123347-49123366 Msa0685080:intron 45.0%
GGGTTACATTTAACGAGCCA+TGG - chr4_4:49123367-49123386 Msa0685080:intron 45.0%
GAGCCATGGTTGTTTAGCAA+TGG - chr4_4:49123381-49123400 Msa0685080:intron 45.0%
CCACCATTGCTAAACAACCA+TGG + chr4_4:49123387-49123406 None:intergenic 45.0%
CCATGGTTGTTTAGCAATGG+TGG - chr4_4:49123384-49123403 Msa0685080:intron 45.0%
GGGCAAGATAGGCATAACAT+TGG - chr4_4:49123675-49123694 Msa0685080:intron 45.0%
! TCTCTTGGCAGCCTTTTGAT+CGG + chr4_4:49123740-49123759 None:intergenic 45.0%
CGGTGTATTAGAGATGGTAG+TGG + chr4_4:49123870-49123889 None:intergenic 45.0%
TTTGCATGCCTAGGAATGTC+CGG + chr4_4:49124104-49124123 None:intergenic 45.0%
ATTCCTAGGCATGCAAACCT+CGG - chr4_4:49124107-49124126 Msa0685080:intron 45.0%
!!! AACTTTTGAAGCTCAGTGGC+TGG - chr4_4:49124147-49124166 Msa0685080:intron 45.0%
CTTTGCGCGAAGGAAATAGA+AGG + chr4_4:49124235-49124254 None:intergenic 45.0%
ATCAACCATACTTTGCGCGA+AGG + chr4_4:49124245-49124264 None:intergenic 45.0%
GAGATGTGGGGGTTGTATTT+GGG + chr4_4:49124422-49124441 None:intergenic 45.0%
TGAGATGTGGGGGTTGTATT+TGG + chr4_4:49124423-49124442 None:intergenic 45.0%
CCTTATATGCTGAGATGTGG+GGG + chr4_4:49124433-49124452 None:intergenic 45.0%
GCCTTATATGCTGAGATGTG+GGG + chr4_4:49124434-49124453 None:intergenic 45.0%
ATGGGTCGTATTTCCAGTTG+TGG + chr4_4:49124524-49124543 None:intergenic 45.0%
GACAGTGCCTACAAGGATAT+GGG + chr4_4:49124542-49124561 None:intergenic 45.0%
AGAAACGACCTCAAGAAGGT+AGG + chr4_4:49124580-49124599 None:intergenic 45.0%
GGATAGAAACGACCTCAAGA+AGG + chr4_4:49124584-49124603 None:intergenic 45.0%
! ACTTGGAGCACCTTCATAGA+GGG + chr4_4:49124634-49124653 None:intergenic 45.0%
! TACTTGGAGCACCTTCATAG+AGG + chr4_4:49124635-49124654 None:intergenic 45.0%
TTCATAGGTTAAGGTGCGCA+AGG - chr4_4:49124798-49124817 Msa0685080:intron 45.0%
GGATAATCTCCGGTTGTTAG+AGG + chr4_4:49124908-49124927 None:intergenic 45.0%
CATTGCCTTGTGGAGGTAAA+TGG + chr4_4:49125051-49125070 None:intergenic 45.0%
ATGGAAAACCTCTAGGTCCA+AGG - chr4_4:49125237-49125256 Msa0685080:intron 45.0%
TGGAAAACCTCTAGGTCCAA+GGG - chr4_4:49125238-49125257 Msa0685080:intron 45.0%
! GCAGGCTTTACTGTTCGTTT+TGG - chr4_4:49126071-49126090 Msa0685080:intron 45.0%
ACCCAAAGCTTTCTGCTCAA+TGG - chr4_4:49126132-49126151 Msa0685080:intron 45.0%
TGATCATAGCTGCTGGTACA+AGG + chr4_4:49126283-49126302 None:intergenic 45.0%
!!! AAAATTCTTTAAAAATAAAT+TGG - chr4_4:49120926-49120945 Msa0685080:intron 5.0%
!! ACTTTATATTATATATAATT+TGG + chr4_4:49122184-49122203 None:intergenic 5.0%
!! AAAAAAATATATATATTAGA+TGG + chr4_4:49125886-49125905 None:intergenic 5.0%
TTGACATCGGCAACCTGAGT+CGG - chr4_4:49119521-49119540 Msa0685080:three_prime_UTR 50.0%
GTGGAAAACTACTCCGACTC+AGG + chr4_4:49119537-49119556 None:intergenic 50.0%
! AGTCGGAGTAGTTTTCCACG+TGG - chr4_4:49119538-49119557 Msa0685080:three_prime_UTR 50.0%
TCCACGTGGCTTCATCTTTG+GGG - chr4_4:49119552-49119571 Msa0685080:three_prime_UTR 50.0%
GTGGTAGAGGACCAAGTATC+TGG - chr4_4:49120172-49120191 Msa0685080:intron 50.0%
!! GTGAAGGTGTCCCAGATACT+TGG + chr4_4:49120186-49120205 None:intergenic 50.0%
ACCTTCACCCATCAACATCC+AGG - chr4_4:49120198-49120217 Msa0685080:intron 50.0%
! ACCTGGATGTTGATGGGTGA+AGG + chr4_4:49120202-49120221 None:intergenic 50.0%
GAATCCGGTAGTAGGTAGGT+TGG - chr4_4:49120710-49120729 Msa0685080:intron 50.0%
ATAGAGGGGAAGTTGAGTGG+AGG - chr4_4:49122944-49122963 Msa0685080:intron 50.0%
TCTAGCCCAACATGTTTGGG+TGG - chr4_4:49123441-49123460 Msa0685080:intron 50.0%
! CTCTTGGCAGCCTTTTGATC+GGG + chr4_4:49123739-49123758 None:intergenic 50.0%
! GTAGTGGGGTGTAGCTTTCA+TGG + chr4_4:49123854-49123873 None:intergenic 50.0%
! GGGTATAGAGATGGCTTGGA+GGG + chr4_4:49124402-49124421 None:intergenic 50.0%
! TGGGTATAGAGATGGCTTGG+AGG + chr4_4:49124403-49124422 None:intergenic 50.0%
CCCCCACATCTCAGCATATA+AGG - chr4_4:49124430-49124449 Msa0685080:intron 50.0%
GGTCGTATTTCCAGTTGTGG+TGG + chr4_4:49124521-49124540 None:intergenic 50.0%
CGACAGTGCCTACAAGGATA+TGG + chr4_4:49124543-49124562 None:intergenic 50.0%
CAATAGCGACAGTGCCTACA+AGG + chr4_4:49124549-49124568 None:intergenic 50.0%
TCATAGAGGGCCTAAGGTGA+AGG + chr4_4:49124621-49124640 None:intergenic 50.0%
TCACCTTAGGCCCTCTATGA+AGG - chr4_4:49124621-49124640 Msa0685080:intron 50.0%
AGACTTACCCTTGGACCTAG+AGG + chr4_4:49125248-49125267 None:intergenic 50.0%
! CTCAGGTTGCCGATGTCAAG+AGG + chr4_4:49119520-49119539 None:intergenic 55.0%
! ACGTGGCTTCATCTTTGGGG+CGG - chr4_4:49119555-49119574 Msa0685080:three_prime_UTR 55.0%
! GTTGGGCTAGAACATCGACC+TGG + chr4_4:49123432-49123451 None:intergenic 55.0%
TGTCCGAGGTTTGCATGCCT+AGG + chr4_4:49124113-49124132 None:intergenic 55.0%
GCACCTTCATAGAGGGCCTA+AGG + chr4_4:49124627-49124646 None:intergenic 55.0%
!! CTTGGAGGAGCATTGCCTTG+TGG + chr4_4:49125061-49125080 None:intergenic 55.0%
!! AGGGCCGGCTCGAATGTAAA+GGG - chr4_4:49126008-49126027 Msa0685080:intron 55.0%
GCCCCAAAGATGAAGCCACG+TGG + chr4_4:49119556-49119575 None:intergenic 60.0%
!! CGTGGCTTCATCTTTGGGGC+GGG - chr4_4:49119556-49119575 Msa0685080:three_prime_UTR 60.0%
!! GAGGGTGCTAAAGAGTGCCC+TGG + chr4_4:49121840-49121859 None:intergenic 60.0%
!! GGAGGAGCATTGCCTTGTGG+AGG + chr4_4:49125058-49125077 None:intergenic 60.0%
!! CAGGGCCGGCTCGAATGTAA+AGG - chr4_4:49126007-49126026 Msa0685080:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 49119421 49126380 49119421 ID=Msa0685080;Name=Msa0685080
chr4_4 mRNA 49119421 49126380 49119421 ID=Msa0685080-mRNA-1;Parent=Msa0685080;Name=Msa0685080-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.25|0.30|1|0.91|0.92|13|199|503
chr4_4 exon 49119421 49119791 49119421 ID=Msa0685080-mRNA-1:exon:12262;Parent=Msa0685080-mRNA-1
chr4_4 exon 49119978 49120086 49119978 ID=Msa0685080-mRNA-1:exon:12261;Parent=Msa0685080-mRNA-1
chr4_4 exon 49120272 49120374 49120272 ID=Msa0685080-mRNA-1:exon:12260;Parent=Msa0685080-mRNA-1
chr4_4 exon 49120542 49120573 49120542 ID=Msa0685080-mRNA-1:exon:12259;Parent=Msa0685080-mRNA-1
chr4_4 exon 49120722 49120906 49120722 ID=Msa0685080-mRNA-1:exon:12258;Parent=Msa0685080-mRNA-1
chr4_4 exon 49122019 49122137 49122019 ID=Msa0685080-mRNA-1:exon:12257;Parent=Msa0685080-mRNA-1
chr4_4 exon 49122250 49122496 49122250 ID=Msa0685080-mRNA-1:exon:12256;Parent=Msa0685080-mRNA-1
chr4_4 exon 49122576 49122663 49122576 ID=Msa0685080-mRNA-1:exon:12255;Parent=Msa0685080-mRNA-1
chr4_4 exon 49122776 49122853 49122776 ID=Msa0685080-mRNA-1:exon:12254;Parent=Msa0685080-mRNA-1
chr4_4 exon 49122951 49123026 49122951 ID=Msa0685080-mRNA-1:exon:12253;Parent=Msa0685080-mRNA-1
chr4_4 exon 49124183 49124241 49124183 ID=Msa0685080-mRNA-1:exon:12252;Parent=Msa0685080-mRNA-1
chr4_4 exon 49125582 49125651 49125582 ID=Msa0685080-mRNA-1:exon:12251;Parent=Msa0685080-mRNA-1
chr4_4 exon 49126207 49126380 49126207 ID=Msa0685080-mRNA-1:exon:12250;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49126207 49126380 49126207 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49125582 49125651 49125582 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49124183 49124241 49124183 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49122951 49123026 49122951 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49122776 49122853 49122776 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49122576 49122663 49122576 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49122250 49122496 49122250 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49122019 49122137 49122019 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49120722 49120906 49120722 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49120542 49120573 49120542 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49120272 49120374 49120272 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49119978 49120086 49119978 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 CDS 49119620 49119791 49119620 ID=Msa0685080-mRNA-1:cds;Parent=Msa0685080-mRNA-1
chr4_4 three_prime_UTR 49119421 49119619 49119421 ID=Msa0685080-mRNA-1:three_prime_utr;Parent=Msa0685080-mRNA-1
Gene Sequence

>Msa0685080

ATGGTATTCATTGGCTATTTCAATGTGGCCATGCTTGCTCTCTTTGTTGTTAGCTCAGTCACACTTACTTTCGCAAACGGAGTTGAAGTTTCAACTCCTCTTGACATCGGCAACCTGAGTCGGAGTAGTTTTCCACGTGGCTTCATCTTTGGGGCGGGATCGTCATCTTACCAATTTGAAGGTGCAGTAAAGAAAGGTGGTAGAGGACCAAGTATCTGGGACACCTTCACCCATCAACATCCAGAAAAAATAAGGGATGGAAGCAATGCAGACGTGACTGTTGACCAATACCATCGCTATAAGGAAGATGTTGGGATTATGAAGGATCAGAATATGGATTCCTATAGATTCTCAATCGCTTGGCCAAGAATACTCCCAAAGGGGAAGTTGAGTGGAGGCATAAATCATGAAGGAATCAAATATTACAACAACCTCATCAACGAATTGTTGGCTAATGGTATACAACCATTCGTAACTCTTTTTCATTGGGATCTTCCCCAAGTCTTAGAAGACGAGTATGGTGGTTTCTTAAGCTCTCTCATAATAAATGATTTTCGAGACTATGCTGATCTTTGCTTCAAGGAATTCGGAGATAGAGTGAAGTACTGGGTTACATTTAACGAGCCATGGTTGTTTAGCAATGGTGGATATGCAATGGGAACAACAGCACCAGGTCGATGTTCTAGCCCAACATGTTTGGGTGGTAATTCTGGCACAGAACCTTATATAGTTACACATAATCAAATTCTTGCTCATGCAGAAGCTGTACATGTGTATAAGATCAAGTATCAGGCATATCAAAAGGGCAAGATAGGCATAACATTGGTAACAAATTGGTTCATACCACTTGGAAACAATAGCATACCCGATCAAAAGGCTGCCAAGAGATCACTTGACTTCCAATTTGGATGGTTTATGGAACCTCTAACAACCGGAGATTATCCTAAAAGCATGCAAGCCATAGTGAAAAACCGATTGCCTAAGTTCACTAAATTGCAATCAAAGCTAGTGAATGGTTCATTTGATTTTATTGGTATAAACTATTACTCTTCTAGCTATATTAACCATTTACCTCCACAAGGCAATGCTCCTCCAATTGAACAAAATGGAAAACCTCTAGGTCCAAGGGCTGCTTCAATTTGGATATACGTTTATCCAAGAGGACTTCGAGATCTTTTGTTATACACAAAGGAGAAATACAACAATCCTGTGGTCTACATTACTGAAAATGGTATGAATGAATTCAACGATGCAACACTTTCTGTAGAAGAAGCTCTTTTGGATACTTACAGAATTGATTACTATTATCGTCATTTCTTCTATATTCGTTCCGCAATCAAGGCCGGCTCGAATGTAAAGGGATTTTTCGCATGGTCATTTTTGGACTGTAATGAATGGTTTGCAGGCTTTACTGTTCGTTTTGGATTAAACTTTGTAGATTACAATGATGGATTGAAAAGGTACCCAAAGCTTTCTGCTCAATGGTACAAGAACTTTCTCAAAAGAAACTAG
Protein sequence

>Msa0685080

MVFIGYFNVAMLALFVVSSVTLTFANGVEVSTPLDIGNLSRSSFPRGFIFGAGSSSYQFEGAVKKGGRGPSIWDTFTHQHPEKIRDGSNADVTVDQYHRYKEDVGIMKDQNMDSYRFSIAWPRILPKGKLSGGINHEGIKYYNNLINELLANGIQPFVTLFHWDLPQVLEDEYGGFLSSLIINDFRDYADLCFKEFGDRVKYWVTFNEPWLFSNGGYAMGTTAPGRCSSPTCLGGNSGTEPYIVTHNQILAHAEAVHVYKIKYQAYQKGKIGITLVTNWFIPLGNNSIPDQKAAKRSLDFQFGWFMEPLTTGDYPKSMQAIVKNRLPKFTKLQSKLVNGSFDFIGINYYSSSYINHLPPQGNAPPIEQNGKPLGPRAASIWIYVYPRGLRDLLLYTKEKYNNPVVYITENGMNEFNDATLSVEEALLDTYRIDYYYRHFFYIRSAIKAGSNVKGFFAWSFLDCNEWFAGFTVRFGLNFVDYNDGLKRYPKLSAQWYKNFLKRN*